Query 042033
Match_columns 490
No_of_seqs 221 out of 1181
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02681 proline dehydrogenase 100.0 8E-117 2E-121 934.1 46.8 433 54-489 20-454 (455)
2 KOG0186 Proline oxidase [Amino 100.0 1.5E-95 3E-100 747.0 24.4 436 55-490 57-506 (506)
3 PF01619 Pro_dh: Proline dehyd 100.0 7.6E-74 1.6E-78 584.0 26.4 305 125-475 1-311 (313)
4 PRK11904 bifunctional proline 100.0 1E-70 2.2E-75 630.5 35.7 358 60-477 117-483 (1038)
5 PRK11905 bifunctional proline 100.0 1.9E-69 4.2E-74 626.5 35.8 355 60-477 118-485 (1208)
6 PRK11809 putA trifunctional tr 100.0 3E-67 6.6E-72 607.8 34.1 359 59-477 197-571 (1318)
7 COG0506 PutA Proline dehydroge 99.9 1E-26 2.2E-31 242.9 12.5 306 60-433 80-390 (391)
8 COG0506 PutA Proline dehydroge 99.8 8.1E-19 1.8E-23 183.6 13.8 276 113-463 27-315 (391)
9 COG4230 Delta 1-pyrroline-5-ca 96.6 0.0011 2.3E-08 71.6 2.2 31 435-465 5-35 (769)
10 KOG0186 Proline oxidase [Amino 95.9 0.0024 5.2E-08 67.8 0.4 81 72-157 2-83 (506)
11 PF14850 Pro_dh-DNA_bdg: DNA-b 90.2 0.13 2.7E-06 45.2 1.0 62 60-124 53-114 (114)
12 PRK13210 putative L-xylulose 5 86.3 22 0.00047 35.2 14.5 103 129-282 50-158 (284)
13 TIGR00542 hxl6Piso_put hexulos 85.3 25 0.00054 35.0 14.3 110 127-287 48-163 (279)
14 PRK13209 L-xylulose 5-phosphat 82.1 41 0.00088 33.4 14.3 102 129-281 55-162 (283)
15 PF01261 AP_endonuc_2: Xylose 81.2 45 0.00098 30.7 14.3 33 250-282 105-137 (213)
16 PRK09856 fructoselysine 3-epim 77.7 75 0.0016 31.3 14.5 28 250-277 122-149 (275)
17 cd00019 AP2Ec AP endonuclease 75.1 69 0.0015 31.8 13.5 31 249-279 115-145 (279)
18 PRK10785 maltodextrin glucosid 66.7 14 0.00031 41.5 7.0 32 122-154 171-203 (598)
19 TIGR03234 OH-pyruv-isom hydrox 61.2 1E+02 0.0022 30.1 11.1 29 250-278 116-144 (254)
20 PRK12677 xylose isomerase; Pro 49.3 2.2E+02 0.0047 30.3 12.0 87 249-340 149-245 (384)
21 TIGR02631 xylA_Arthro xylose i 41.4 3.4E+02 0.0073 28.9 11.9 88 249-342 150-248 (382)
22 cd02810 DHOD_DHPD_FMN Dihydroo 39.1 1.6E+02 0.0035 29.5 8.7 67 125-194 105-172 (289)
23 PRK09997 hydroxypyruvate isome 37.3 3.1E+02 0.0067 26.8 10.3 29 250-278 117-145 (258)
24 PRK03906 mannonate dehydratase 35.9 1.8E+02 0.0039 31.1 8.7 32 249-280 206-237 (385)
25 TIGR00695 uxuA mannonate dehyd 33.5 3.3E+02 0.0072 29.3 10.2 34 248-281 205-238 (394)
26 smart00642 Aamy Alpha-amylase 33.1 39 0.00084 31.5 2.9 24 256-279 69-92 (166)
27 PRK12677 xylose isomerase; Pro 29.3 6.4E+02 0.014 26.8 11.6 60 251-331 108-170 (384)
28 COG2884 FtsE Predicted ATPase 29.0 67 0.0015 31.4 3.8 25 377-401 178-202 (223)
29 TIGR01210 conserved hypothetic 28.5 6.1E+02 0.013 26.0 11.1 62 127-195 151-213 (313)
30 COG3623 SgaU Putative L-xylulo 28.3 6.3E+02 0.014 25.5 11.7 158 130-348 53-220 (287)
31 PF06514 PsbU: Photosystem II 25.6 34 0.00074 29.1 1.0 32 416-454 22-53 (93)
32 PF00128 Alpha-amylase: Alpha 25.2 61 0.0013 31.8 2.9 24 256-279 51-74 (316)
33 TIGR02401 trehalose_TreY malto 23.1 2.2E+02 0.0048 33.5 7.2 26 123-148 8-33 (825)
34 cd03319 L-Ala-DL-Glu_epimerase 22.8 5.4E+02 0.012 26.1 9.4 21 256-276 265-285 (316)
35 cd04739 DHOD_like Dihydroorota 21.8 5.5E+02 0.012 26.5 9.3 28 125-152 106-134 (325)
36 PRK05301 pyrroloquinoline quin 21.4 9E+02 0.019 25.1 11.0 21 312-332 163-183 (378)
37 TIGR02109 PQQ_syn_pqqE coenzym 21.2 7.3E+02 0.016 25.5 10.2 22 312-333 154-175 (358)
38 cd00019 AP2Ec AP endonuclease 20.8 8.1E+02 0.017 24.1 13.9 189 258-464 11-249 (279)
39 PF06506 PrpR_N: Propionate ca 20.1 1.2E+02 0.0026 28.3 3.6 65 309-379 103-168 (176)
No 1
>PLN02681 proline dehydrogenase
Probab=100.00 E-value=7.7e-117 Score=934.07 Aligned_cols=433 Identities=59% Similarity=0.988 Sum_probs=412.8
Q ss_pred CCcccccCChhhHhhcCCHHHHHHHHHhhhhccCcchhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcceeccCChHHH
Q 042033 54 GSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEA 133 (490)
Q Consensus 54 ~~~~l~F~d~~~af~~~st~~Llrs~~v~~l~s~~~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~FvaGEt~~e~ 133 (490)
.+..++|+|++.+|+.+|||+|+||++||++|++++||++|.++|+..+. ..++.+++++||+|||+|||||||.+|+
T Consensus 20 ~~~~~~f~d~~~~f~~~s~~~Llr~~~v~~~~s~~~lv~~~~~~~~~~~~--~~~~~~~~~~~k~t~y~~F~aGEt~~e~ 97 (455)
T PLN02681 20 SDDVLDFSDHAALFAGLSTSELLRSLLVLQLCAIGPLVDLGEWLLTSPLM--VLGRAIVLALVKATFYSHFCAGEDAEEA 97 (455)
T ss_pred CCCCCCcCchHHHHhcCCHHHHHHHHHHHHHhcchHHhhhhHHHHHHHHh--hcccHHHHHHHHHHHHhheecCCCHHHH
Confidence 46688999999999999999999999999999999999999999985322 3344579999999999999999999999
Q ss_pred HHHHHHHHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCCCCCCCCeEEEEeCCcCchhHHHHhHHHhhhhhcC
Q 042033 134 TDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRD 213 (490)
Q Consensus 134 ~~~i~~L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~~~~~~~vsvKlTaLg~~~ll~~~s~~l~~~~~~ 213 (490)
++++++|++.|+++||||++|++.++++||++++.|+++|+.++..+.++ ++|+||+||||+++||+++|++++|.+.+
T Consensus 98 ~~~i~~L~~~G~~~iLdy~~E~~~~e~~~d~~~~~~l~~Id~~~~~~~~~-~~vsiK~Talg~~~ll~~~s~~~~~~~~~ 176 (455)
T PLN02681 98 ARTVRRLWELGLGGILDYAAEDAGDNAACDRNLEKFLAAIRAAATLPPSS-SSAAVKITALCPPSLLERVSDLLRWQDRD 176 (455)
T ss_pred HHHHHHHHHCCCeEEeeccccCcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CceEEeeccCCcHHHHHhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999998765432 79999999999999999999999999999
Q ss_pred CCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCchhHHHHHHHHH
Q 042033 214 PSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNA 293 (490)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~q~aId~~~~~l 293 (490)
++..+||++.++++.+.++|.|+...++++||++|+.+++.+++|+++||++|+++||+|+|||||+|+||+||.++.+|
T Consensus 177 ~~~~l~~~~~~~~l~~~~s~~~~~~~~~~~l~~~e~~~~~~~~~rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l 256 (455)
T PLN02681 177 PNGKLPWKQWSFPLFADSSPLYHATSEPEPLTAEEERLLELAHERLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDL 256 (455)
T ss_pred ccccccccccccccccccchhhhhccccccCchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcC-CCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCCCCccCHHHHHHHHH
Q 042033 294 ALSNNKA-GKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYN 372 (490)
Q Consensus 294 ~~~~N~~-~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~Pi~~tk~~Td~~Y~ 372 (490)
|++||++ ++|+||||||||||||+++|..++++|+++|+++||||||||||++|+++|+++|||+|||++|++||+||+
T Consensus 257 ~~~yN~~~~~~~V~~T~QaYLk~t~~~l~~~l~~a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~ 336 (455)
T PLN02681 257 AREFNKGKDRPIVYGTYQAYLKDARERLRLDLERSEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYN 336 (455)
T ss_pred HHHhccccCCCcEEEEEeCccccCHHHHHHHHHHHHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHH
Confidence 9999975 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCC-CCCceEEeecccCChHHHHHHHhCCCCCeeEeeccCccc
Q 042033 373 DCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIK-GDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDK 451 (490)
Q Consensus 373 ~~~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~-~~~~veF~qL~GM~D~ls~~L~~~G~~V~kYvPyG~~~e 451 (490)
+|+++|++++..+.++++|||||++||++|+++|.++|++ .+++|+|||||||+|++++.|+++||+||||+||||+++
T Consensus 337 ~~~~~lL~~~~~~~~~~~vATHN~~Si~~a~~~~~~~gi~~~~~~veF~qL~GM~d~ls~~L~~~G~~V~kYvPyG~~~e 416 (455)
T PLN02681 337 RCAEFLLEKASNGDGEVMLATHNVESGELAAAKMNELGLHKGDPRVQFAQLLGMSDNLSFGLGNAGFRVSKYLPYGPVEE 416 (455)
T ss_pred HHHHHHhhhhccCCeeeEEecCCHHHHHHHHHHHHHcCCCCCCCCEEEeccCCCCHHHHHHHHhcCCCEEEEeeccCchh
Confidence 9999999988666689999999999999999999999998 446999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhhccccccHHHHHHHHHHHHHHhhhhc
Q 042033 452 IIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAAV 489 (490)
Q Consensus 452 ~lpYL~RRa~EN~~~l~~~~~e~~ll~~El~RR~~~~~ 489 (490)
|||||+|||+||+++++++++|++++|+||+||+++++
T Consensus 417 ~~pYL~RRa~EN~~~~~~~~~er~~l~~El~RR~~~~~ 454 (455)
T PLN02681 417 VIPYLLRRAEENRGLLSGSAIDRQLLRKELKRRLKAAV 454 (455)
T ss_pred hHHHHHHHHhhhhHhHhccHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999998876
No 2
>KOG0186 consensus Proline oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-95 Score=747.02 Aligned_cols=436 Identities=41% Similarity=0.649 Sum_probs=394.5
Q ss_pred CcccccCChhhHhhcCCHHHHHHHHHhhhhccCcchhhhhHHhhhhhh-cCchHHhHHHHH------HHHHHhhcceecc
Q 042033 55 SSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRL-MDIDLAREVVMC------TVRHSFYEHFCAG 127 (490)
Q Consensus 55 ~~~l~F~d~~~af~~~st~~Llrs~~v~~l~s~~~lv~~~~~ll~~~~-~~~~~~~~~~~~------~~k~Tf~~~FvaG 127 (490)
...++.++.-.+|..+|..+++++..+++.....++++.|.|++..++ ...+.++.++.. ++|.|||+|||||
T Consensus 57 ~~~l~~~~~~r~f~~~~i~d~~~~~~~~~~~~~~~~~elg~~~~~~kl~~~~~t~~~lf~~r~~gv~~~r~tFY~~fC~g 136 (506)
T KOG0186|consen 57 EANLRLSDKARAFGGKPILDYLVSTDLLSALAIKKTVELGSWLAAVKLSAGTNTIRRLFGDRRNGVPFARTTFYEHFCAG 136 (506)
T ss_pred hhhhhhhHHHHhccCCCccchhhhhhhhhhhcccceeehhhHHHHHhhcccchHHHHHhcccccCCchheeeeHhhhcCC
Confidence 456778888899999999999999999999999999999999886443 233334555544 9999999999999
Q ss_pred CChHHHHHHH-HHHHhCCceeecccccccCCChHHHHHH-HHHHHHHHHHhhCCCCCCCCeEEEEeCCcCchhHHHHhHH
Q 042033 128 ENAPEATDCV-RRVNDAGLRGMLVYAVEHTDDVSECEQN-LQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSD 205 (490)
Q Consensus 128 Et~~e~~~~i-~~L~~~Gi~~iLdy~~E~~~~~~~~d~~-~~~~l~~I~~~~~~~~~~~~~vsvKlTaLg~~~ll~~~s~ 205 (490)
|+..+++..+ ..+++.|+.+++.|++|.+.+...++.+ .+.|.+........+.+...-+-+|++++.+...++++++
T Consensus 137 e~f~~aie~v~~~~q~~G~~~ml~lg~e~~~~~~S~~~~~~~qfv~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~v~~ 216 (506)
T KOG0186|consen 137 EDFKEAIEAVMSRLQATGIKSMLALGREQALDGDSEVSNPVQQFVKTTEVAVSLPASHLRSVLVKITAILETASLKDVFD 216 (506)
T ss_pred ccHHHHHHHHHHHHHhcchhhhhhccCccccccchhhhhHHHHhhccccccccchHHHHHHHHhhhhhhcccccHhhhhH
Confidence 9999998888 8999999999999999999998888887 8888887765443331111135689999988888999999
Q ss_pred HhhhhhcCCCCCCCcccCCCCCccCCCcccccCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCch
Q 042033 206 LLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKP--EPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQ 283 (490)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~--~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~q 283 (490)
.+.|....+-+.++|+....+.++.++++|+...++ .+||.+|+++++.+++|++++|++|++.||+++|||||+++|
T Consensus 217 ~~~~~~~~~~~l~~w~~~~~~~~~~s~~~~~~~~esg~~~ls~eee~el~~~~~rl~~v~~~a~e~~V~llvDAE~T~lq 296 (506)
T KOG0186|consen 217 LLLTLYKSPLVLLPWNSLLNPSFKLSKPLYVENIESGQLPLSAEEEQELEKMLSRLDKVAQRAQEKGVRLLVDAEQTYLQ 296 (506)
T ss_pred HHhhcCCCchhcccchhccCcccccchhHHHhhccCccccccHHHHHHHHHHHHHHHHHHHHHHHcCCceeechhhhhhh
Confidence 999988888889999887777788889999988777 459999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCcC-CCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCCCCcc
Q 042033 284 PAIDYLTYNAALSNNKA-GKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHN 362 (490)
Q Consensus 284 ~aId~~~~~l~~~~N~~-~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~Pi~~ 362 (490)
|||+.++.+||+|||.+ +.|+||||||||||||.+++..+++.|+++||+||+||||||||++|+++|...||++|+++
T Consensus 297 pai~~lt~~l~~kfN~~k~~p~v~NTyQaYLKda~e~l~~d~k~A~reG~~~G~KLVRGAYl~sEra~a~~~G~edp~~d 376 (506)
T KOG0186|consen 297 PAISYLTYELARKFNSDKERPIVFNTYQAYLKDAGERLHLDLKLARREGWPFGAKLVRGAYLSSERARAISIGYEDPTND 376 (506)
T ss_pred hHHHHHHHHHHHHhCCCCCCceEeeeHHHHHhhHHHHHHHHHHHHHHcCCchhhhhhhhhhhccchhHHHhcCCcCCCCc
Confidence 99999999999999931 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCC-CcEEEeCCChHHHHHHHHHHHHhCCC-CCCceEEeecccCChHHHHHHHhCCCCC
Q 042033 363 SIQETHACYNDCASYMLEKIADGS-GAVVLATHNVESGQLAAAKATDLGIK-GDQKLEFAQLYGMAEALSYGLRNAGFQV 440 (490)
Q Consensus 363 tk~~Td~~Y~~~~~~ll~~~~~~~-~~~~vATHN~~si~~a~~~~~~~gi~-~~~~veF~qL~GM~D~ls~~L~~~G~~V 440 (490)
++++|+++|++|+.++++...+++ .++||||||++|+.+|..+|+++||. .++.|+|+|||||||++|+.|+++||+|
T Consensus 377 ~yeat~~~y~~cl~~~~e~~~~~~~~~vmVASHN~dS~r~a~nlm~elgi~~~~~~i~fgQLlGM~D~vSf~L~qagf~V 456 (506)
T KOG0186|consen 377 TYEATSAMYNRCLTFLLEDVARGSKAHVMVASHNEDSVRLATNLMEELGINPAKGKIYFGQLLGMCDQVSFALGQAGFNV 456 (506)
T ss_pred hHHHHHHHHHHHHHHhhhhhccCCceeEEEEecchHHHHHHHHHHHHhCCCcccceEeHHHhhcchhhhchhhccCCcee
Confidence 999999999999999999987763 48999999999999999999999996 6789999999999999999999999999
Q ss_pred eeEeeccCccccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHhhhhcC
Q 042033 441 SKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAAVM 490 (490)
Q Consensus 441 ~kYvPyG~~~e~lpYL~RRa~EN~~~l~~~~~e~~ll~~El~RR~~~~~~ 490 (490)
+|||||||++|++|||+|||+||++++.++..||+++|+|||||++.+..
T Consensus 457 ~KYvPyGPv~EvlPYL~RRA~EN~~~l~~~~~er~ll~~eL~RRl~~G~~ 506 (506)
T KOG0186|consen 457 YKYVPYGPVEEVLPYLLRRAQENRSALKGANRERQLLRQELKRRLRAGLL 506 (506)
T ss_pred EEeecCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHhhhhcccC
Confidence 99999999999999999999999999999999999999999999998753
No 3
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=100.00 E-value=7.6e-74 Score=584.00 Aligned_cols=305 Identities=37% Similarity=0.511 Sum_probs=253.5
Q ss_pred eccCChHHHHHHHHHHHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCC--C--CCCCCeEEEEeCCcCchhHH
Q 042033 125 CAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSL--P--PESASFVIAKISAICPMSLL 200 (490)
Q Consensus 125 vaGEt~~e~~~~i~~L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~--~--~~~~~~vsvKlTaLg~~~ll 200 (490)
|||||++++++++++|++.|+.+++|++||.+.+++++++.++.|+++|+.++.. . ....+.+++|++++++.
T Consensus 1 vaGet~~~a~~~~~~l~~~g~~~sld~LGE~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~k~s~l~~~--- 77 (313)
T PF01619_consen 1 VAGETIEDALKTIRRLNRQGIRVSLDYLGEAVLTEEEADAYVEEYLQLIDAIAEAGLSWNIFSRPNVSVKLSALSPK--- 77 (313)
T ss_dssp SCESSHHHHHHHHHHHHHTTEEEEEEEC-SS--SHHHHHHHHHHHHHHHHHHHHHHCCSCTCCS-EEEE-GGGCCTT---
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEeeccccCCHHHHHHHHHHHHHHHHHhhhhccccccCcCCceeeehhhcccc---
Confidence 7999999999999999999999999999999999999999999999999887532 1 12345789999999641
Q ss_pred HHhHHHhhhhhcCCCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcc
Q 042033 201 QRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDT 280 (490)
Q Consensus 201 ~~~s~~l~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s 280 (490)
+ . ..+++.+++.+.+++++||+.|+++||+|+||||++
T Consensus 78 --~--------------------------------------~--~~~~~~~~~~~~~~l~~i~~~A~~~~v~v~iDaE~~ 115 (313)
T PF01619_consen 78 --L--------------------------------------S--PLGEEIDLERALERLRRICERAKEHGVFVLIDAEES 115 (313)
T ss_dssp --G--------------------------------------G--GGGHHHHHHHHHHHHHHHHHHHHHTTEEEEE----G
T ss_pred --C--------------------------------------C--HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEcCCCc
Confidence 0 0 123345788999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCcCCCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCCC-
Q 042033 281 FVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSP- 359 (490)
Q Consensus 281 ~~q~aId~~~~~l~~~~N~~~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~P- 359 (490)
++|++|+.+...+|++||+ ++|+||||||||||||+++|.+++++|+++||++||||||||||++|+++|+++||++|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~~vg~tlQaYL~~t~~~l~~l~~~a~~~g~~~~vRLVkGAY~e~E~~~a~~~g~~~~~ 194 (313)
T PF01619_consen 116 WYQDAILDLFLELMRKYNK-GWPNVGITLQAYLKRTPDDLERLLELARRRGFRLGVRLVKGAYLESERKRAQQHGYPDPP 194 (313)
T ss_dssp GGHHHHHHHHHHHCCHHGT-T--SEEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--SSHHHHHHHHHHTTTSS-S
T ss_pred cchHHHHHHHHHHhhHhhC-CCCeEEEEEechhhchHHHHHHHHHHHHHcCCeEEEEEecCCCCCchhHHHHHcCCCCCC
Confidence 9999999999999999996 89999999999999999999999999999999999999999999999999999999855
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCC-CCCceEEeecccCChHHHHHHHhCCC
Q 042033 360 IHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIK-GDQKLEFAQLYGMAEALSYGLRNAGF 438 (490)
Q Consensus 360 i~~tk~~Td~~Y~~~~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~-~~~~veF~qL~GM~D~ls~~L~~~G~ 438 (490)
++++|++||.+|..|+..+++....+.++++|||||++||.++.++++++|++ .+++|||||||||+|++++.|++.||
T Consensus 195 ~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~~a~~l~~~~~~~~~~~~~efq~L~Gm~d~l~~~L~~~g~ 274 (313)
T PF01619_consen 195 AFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIALALELAEELGIPPNDDRVEFQQLYGMADDLSRALAQAGY 274 (313)
T ss_dssp B-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHHHHHHHHHCTT-GG--GGEEEEEETTSSHHHHHHHHHHTS
T ss_pred CCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHHHHHHHHHHcCCCcccccEEeehhccCCHHHHHHHHhCCC
Confidence 58899999999999999998753333378999999999999999999999987 45799999999999999999999999
Q ss_pred CCeeEeeccCccccHHHHHHHHHhhhccccccHHHHH
Q 042033 439 QVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQ 475 (490)
Q Consensus 439 ~V~kYvPyG~~~e~lpYL~RRa~EN~~~l~~~~~e~~ 475 (490)
+|+|||||||+++|||||+||++||+++++...++++
T Consensus 275 ~v~~YvP~G~~~~~~~YL~RRl~EN~~~~~~~~~~~~ 311 (313)
T PF01619_consen 275 RVRKYVPYGPVEEWMPYLVRRLAENPANLSFVRREFN 311 (313)
T ss_dssp EEEEEEEESEGGGHHHHHHHHHHHHHGTTSHHHHHT-
T ss_pred CEEEEEecCChhHHHHHHHHHHHhchhHHHHHHHHhh
Confidence 9999999999999999999999999987776665543
No 4
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00 E-value=1e-70 Score=630.55 Aligned_cols=358 Identities=25% Similarity=0.316 Sum_probs=307.5
Q ss_pred cCChhhHhhcCCHHHHHHHHHhhhhccCc--chhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcceeccCChHHHHHHH
Q 042033 60 INDHEKLFSLLSTTKLIRAAANLHLAAVE--PLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCV 137 (490)
Q Consensus 60 F~d~~~af~~~st~~Llrs~~v~~l~s~~--~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~FvaGEt~~e~~~~i 137 (490)
..+.++.|.+.|||.|+-+..|+.....+ .+...-..++++ ++.|+++..+...|+ ++++|||+|||++||++++
T Consensus 117 ~~~~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~~~qFv~Geti~ea~~~~ 193 (1038)
T PRK11904 117 LGRSDSLFVNASTWGLMLTGKVVKLDKKADGTPSGVLKRLVNR--LGEPVIRKAMRQAMK-IMGKQFVLGRTIEEALKRA 193 (1038)
T ss_pred cCCCccceeeHHHHHHHHhheecCcccccCCCHHHHHHHHHHh--cccHHHHHHHHHHHH-HhcCEecCCCCHHHHHHHH
Confidence 56777899999999999999999986432 233333344543 788888888888888 8899999999999999999
Q ss_pred HHHHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCCC----CCCCCeEEEEeCCcCchhHHHHhHHHhhhhhcC
Q 042033 138 RRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLP----PESASFVIAKISAICPMSLLQRVSDLLRWQQRD 213 (490)
Q Consensus 138 ~~L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~----~~~~~~vsvKlTaLg~~~ll~~~s~~l~~~~~~ 213 (490)
++|++.|++.++||+||++.++++++++++.|++.|+.++... ....++||||+|+||+. ++
T Consensus 194 ~~l~~~G~~~s~D~LGE~~~t~~~a~~~~~~y~~~i~~i~~~~~~~~~~~~~~iSvKlSal~~~--~~------------ 259 (1038)
T PRK11904 194 RSARNKGYRYSFDMLGEAALTAADAERYFKAYARAIEAIGRAAGGADLPARPGISIKLSALHPR--YE------------ 259 (1038)
T ss_pred HHHHhCCCEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEehhhcccc--cc------------
Confidence 9999999999999999999999999999999999999987532 12367999999999962 00
Q ss_pred CCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccC-chhHHHHHHHH
Q 042033 214 PSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTF-VQPAIDYLTYN 292 (490)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~-~q~aId~~~~~ 292 (490)
. .+++..++.+++|+.+||+.|+++|++|+||||+++ ++.++|.+..
T Consensus 260 -----------------------------~--~~~~~~~~~~~~rl~~l~~~A~~~~~~v~IDaEe~~~~~~tL~l~~~- 307 (1038)
T PRK11904 260 -----------------------------A--AQRERVLAELVPRVLELARLAKEANIGLTIDAEEADRLELSLDLFEA- 307 (1038)
T ss_pred -----------------------------c--cChhhHHHHHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-
Confidence 0 123457888999999999999999999999999998 4667775553
Q ss_pred HHHhcCcCCCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCC-CCccCHHHHHHHH
Q 042033 293 AALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSIQETHACY 371 (490)
Q Consensus 293 l~~~~N~~~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~-Pi~~tk~~Td~~Y 371 (490)
++..-.-.+++.||+|||||||||+++|++++++|++.|++++||||||||||+|+++|++.||++ |+|++|++||.||
T Consensus 308 l~~~~~~~~~~~~Giv~QAYlkr~~~~l~~l~~~A~~~g~~~~VRLVKGAY~e~E~~~a~~~g~~~~pv~~~K~~tD~~Y 387 (1038)
T PRK11904 308 LFRDPSLKGWGGFGLAVQAYQKRALPVLDWLADLARRQGRRIPVRLVKGAYWDSEIKRAQELGLPGYPVFTRKAATDVSY 387 (1038)
T ss_pred HhcCccccCCCCeeEEEEcccCccHHHHHHHHHHHHHcCCccceEEEecCCcchhhhHHHhcCCCCCCccCCHHHHHHHH
Confidence 332211124678999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCCCCCceEEeecccCChHHHHHHH-hCCCCCeeEeeccCcc
Q 042033 372 NDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLR-NAGFQVSKYMPFGPVD 450 (490)
Q Consensus 372 ~~~~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~~~~~veF~qL~GM~D~ls~~L~-~~G~~V~kYvPyG~~~ 450 (490)
++|+++||++. +.++++|||||+.||..+.+++. +++|||||||||+|++++.|+ +.||+|++|+|||+++
T Consensus 388 ~~~~~~ll~~~--~~~~~~~ATHN~~si~~~~~l~~------~~~~efq~L~GM~d~l~~~L~~~~g~~vrvY~P~G~~~ 459 (1038)
T PRK11904 388 LACARKLLSAR--GAIYPQFATHNAHTVAAILEMAG------HRGFEFQRLHGMGEALYDALLDAPGIPCRIYAPVGSHK 459 (1038)
T ss_pred HHHHHHHHcCC--CCcceEEeCCCHHHHHHHHHHcc------CCcEEEEccCCCCHHHHHHHHHhCCCcEEEEEEeccch
Confidence 99999999863 33689999999999999887653 358999999999999999999 6799999999999999
Q ss_pred ccHHHHHHHHHhhhccccccHHHHHHH
Q 042033 451 KIIPYLLRRAEENRGFLSASNLDRQLM 477 (490)
Q Consensus 451 e~lpYL~RRa~EN~~~l~~~~~e~~ll 477 (490)
+|||||+||++||+ ++++|.+++.
T Consensus 460 ~~l~YLvRRl~EN~---an~sfv~~~~ 483 (1038)
T PRK11904 460 DLLPYLVRRLLENG---ANSSFVHRLV 483 (1038)
T ss_pred hhHHHHHHHHHhcc---hhHHHHHHhc
Confidence 99999999999999 8888887754
No 5
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-69 Score=626.47 Aligned_cols=355 Identities=23% Similarity=0.260 Sum_probs=305.1
Q ss_pred cCChhhHhhcCCHHHHHHHHHhhhhccCcchhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcceeccCChHHHHHHHHH
Q 042033 60 INDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRR 139 (490)
Q Consensus 60 F~d~~~af~~~st~~Llrs~~v~~l~s~~~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~FvaGEt~~e~~~~i~~ 139 (490)
..+.++.|.+.|||.|+-+..|++......+...-..++++ ++.|+++..++..|| ++|+|||+|||++|+++++++
T Consensus 118 ~~~~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~i~~~~~~am~-~~~~qFv~Geti~eal~~~~~ 194 (1208)
T PRK11905 118 LGGSKSLFVNAATWGLMLTGKLLSTVNDRGLSAALTRLIAR--LGEPVIRKAVDMAMR-MMGEQFVTGETIEEALKRARE 194 (1208)
T ss_pred cCCCCcceeeHHHHHHHHhceecCccccCCHHHHHHHHHHh--ccHHHHHHHHHHHHH-HHhCeeccCCCHHHHHHHHHH
Confidence 46778999999999999999999887654444333344443 688887777777777 999999999999999999999
Q ss_pred HHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCCC----CCCCCeEEEEeCCcCchhHHHHhHHHhhhhhcCCC
Q 042033 140 VNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLP----PESASFVIAKISAICPMSLLQRVSDLLRWQQRDPS 215 (490)
Q Consensus 140 L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~----~~~~~~vsvKlTaLg~~~ll~~~s~~l~~~~~~~~ 215 (490)
|++.|++.++||+||.+.++++++++.+.|++.|+.++... ....++||||+|+||+..
T Consensus 195 l~~~G~~~s~D~LGE~~~t~~~A~~~~~~y~~~i~~i~~~~~~~~~~~~~~iSvKlSalg~~~----------------- 257 (1208)
T PRK11905 195 LEARGYRYSYDMLGEAARTAADAERYYRDYERAIHAIGKAATGRGVYDGPGISVKLSALHPRY----------------- 257 (1208)
T ss_pred HHhCCCEEEEEeccCCcCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEccccCcch-----------------
Confidence 99999999999999999999999999999999999887432 123679999999999631
Q ss_pred CCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCch-hHHHHHHHHHH
Q 042033 216 FNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQ-PAIDYLTYNAA 294 (490)
Q Consensus 216 ~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~q-~aId~~~~~l~ 294 (490)
.. .+.+..++.+++|+.+||++|+++|++|+||||+++.+ .++|.+
T Consensus 258 --------------------~~--------~~~~~~~~~l~~~l~~l~~~A~~~~~~l~IDaEe~~~~~~tL~l~----- 304 (1208)
T PRK11905 258 --------------------ER--------AQRERVMAELLPRLKALALLAKAYDIGLNIDAEEADRLELSLDLL----- 304 (1208)
T ss_pred --------------------hh--------hhHhhHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccchHHHHHHH-----
Confidence 00 12245678899999999999999999999999999865 344533
Q ss_pred HhcCcC----CCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCC-CCccCHHHHHH
Q 042033 295 LSNNKA----GKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSIQETHA 369 (490)
Q Consensus 295 ~~~N~~----~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~-Pi~~tk~~Td~ 369 (490)
++++.+ +++.+++||||||||++++|++++++|++.|++++||||||||||+|+++|++.||++ |+|++|++||.
T Consensus 305 ~~l~~~~~~~~~~~~GivlQAYlkr~~~~l~~l~~~A~~~g~~~~VRLVKGAY~d~E~k~a~~~g~~~~pv~~~K~~tD~ 384 (1208)
T PRK11905 305 EALCSDPDLAGWNGIGFVVQAYQKRCPFVIDYLIDLARRSGRRLMVRLVKGAYWDAEIKRAQVDGLEGFPVFTRKVHTDV 384 (1208)
T ss_pred HHHhcCcccccCCCceEEEEccCCccHHHHHHHHHHHHhcCCCceEEEEecCCcChhhhHHHhcCCCCCCCcCCHHHHHH
Confidence 344421 3566899999999999999999999999999999999999999999999999999985 99999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCCCCCceEEeecccCChHHHHHHH---hCCCCCeeEeec
Q 042033 370 CYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLR---NAGFQVSKYMPF 446 (490)
Q Consensus 370 ~Y~~~~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~~~~~veF~qL~GM~D~ls~~L~---~~G~~V~kYvPy 446 (490)
||++|+++||++. ...+++|||||+.||..+.+++.+. ++|||||||||+|++++.|. +.||+||+|+||
T Consensus 385 ~Y~~~~~~ll~~~--~~~~p~~ATHN~~sia~~~~la~~~-----~~~efq~L~GM~d~l~~~l~~~~~~g~~vriY~P~ 457 (1208)
T PRK11905 385 SYIACARKLLAAR--DVIYPQFATHNAQTLAAIYELAGGK-----GDFEFQCLHGMGEPLYDQVVGKEKLGRPCRIYAPV 457 (1208)
T ss_pred HHHHHHHHHHhCC--ccCCceEecCCHHHHHHHHHHhhhc-----CCEEEEccCCcCHHHHHHHHhhhcCCCeeEEEEEe
Confidence 9999999999853 2368999999999999988876543 37999999999999999997 479999999999
Q ss_pred cCccccHHHHHHHHHhhhccccccHHHHHHH
Q 042033 447 GPVDKIIPYLLRRAEENRGFLSASNLDRQLM 477 (490)
Q Consensus 447 G~~~e~lpYL~RRa~EN~~~l~~~~~e~~ll 477 (490)
|++++|||||+||++||+ ++++|.+++.
T Consensus 458 G~~~~~l~YLvRRl~EN~---an~sfv~~~~ 485 (1208)
T PRK11905 458 GTHETLLAYLVRRLLENG---ANSSFVNRIV 485 (1208)
T ss_pred cchHHhHHHHHHHHHhcc---chHHHHHHhh
Confidence 999999999999999999 8888888765
No 6
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=100.00 E-value=3e-67 Score=607.80 Aligned_cols=359 Identities=22% Similarity=0.217 Sum_probs=308.4
Q ss_pred ccCChhhHhhcCCHHHHHHHHHhhhhccCcchhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcceeccCChHHHHHHHH
Q 042033 59 DINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVR 138 (490)
Q Consensus 59 ~F~d~~~af~~~st~~Llrs~~v~~l~s~~~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~FvaGEt~~e~~~~i~ 138 (490)
...+.++.|.+.|||.|+-+..++...+.+.+...-..+++ ..+.|+++..+...|| ++++|||+|||++|++++++
T Consensus 197 h~~~s~s~~vna~~w~l~~t~~~~~~~~~~~~~~~l~~~~~--~~g~p~ir~~~~~a~~-~m~~qFV~Geti~eal~~~~ 273 (1318)
T PRK11809 197 HLGRSPSLFVNAATWGLLFTGKLVSTHNEASLSSSLNRIIG--KSGEPLIRKGVDMAMR-LMGEQFVTGETIAEALANAR 273 (1318)
T ss_pred hcCCCccceeeHHHHHHHHhceecCCCCCcCHHHHHHHHHH--hccCHHHHHHHHHHHH-HhcCeeecCCCHHHHHHHHH
Confidence 35777899999999999999999988765555544444555 3788988888888888 89999999999999999999
Q ss_pred HHHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCCC----CCCCCeEEEEeCCcCchhHHHHhHHHhhhhhcCC
Q 042033 139 RVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLP----PESASFVIAKISAICPMSLLQRVSDLLRWQQRDP 214 (490)
Q Consensus 139 ~L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~----~~~~~~vsvKlTaLg~~~ll~~~s~~l~~~~~~~ 214 (490)
+|++.|++.++||+||++.++++++++.+.|++.|+.++... ....++||||+|+||+.. +.
T Consensus 274 ~l~~~G~~~s~D~LGEaa~t~~dA~~y~~~y~~~I~~i~~~~~~~~~~~~~~ISvKlSaL~~~~--~~------------ 339 (1318)
T PRK11809 274 KLEEKGFRYSYDMLGEAALTEADAQAYLASYEQAIHAIGKASNGRGIYEGPGISIKLSALHPRY--SR------------ 339 (1318)
T ss_pred HHHhCCCEEEEEcccCCcCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEeccccChhh--hH------------
Confidence 999999999999999999999999999999999999887431 112479999999999631 00
Q ss_pred CCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCc-hhHHHHHHHHH
Q 042033 215 SFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFV-QPAIDYLTYNA 293 (490)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~-q~aId~~~~~l 293 (490)
...+..++.+++|+.+||+.|+++|++|+||||+++. +.++| +
T Consensus 340 -------------------------------~~~~~v~~~l~~rl~~L~~~A~~~~i~l~IDaEe~~~l~ltLd-----l 383 (1318)
T PRK11809 340 -------------------------------AQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLD-----L 383 (1318)
T ss_pred -------------------------------HHHhhhHHHHHHHHHHHHHHHHhcCCEEEEeCCCCCchHHHHH-----H
Confidence 1123456778999999999999999999999999974 54555 4
Q ss_pred HHhcCcC----CCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCC-CCCccCHHHHH
Q 042033 294 ALSNNKA----GKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFD-SPIHNSIQETH 368 (490)
Q Consensus 294 ~~~~N~~----~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~-~Pi~~tk~~Td 368 (490)
++++|.+ ++..+|+|+||||||++.+|++++++|++.|++++||||||||||+|.++|+..||+ +|||++|++||
T Consensus 384 ~~~l~~~~~~~~~~~~GivvQAYlkra~~~l~~l~~lA~~~~~~l~VRLVKGAY~d~E~k~Aq~~g~~~~pv~t~K~~TD 463 (1318)
T PRK11809 384 LEKLCFEPELAGWNGIGFVIQAYQKRCPFVIDYLIDLARRSRRRLMIRLVKGAYWDSEIKRAQVDGLEGYPVYTRKVYTD 463 (1318)
T ss_pred HHHHHcCccccCCCCeEEEEeCCcccCHHHHHHHHHHHHhcCCccCcceeccccCChhhhHHHhcCCCCCCCcCCHHHHH
Confidence 4555532 366799999999999999999999999999999999999999999999999999998 69999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCCCCCceEEeecccCChHHHHHHHhC------CCCCee
Q 042033 369 ACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNA------GFQVSK 442 (490)
Q Consensus 369 ~~Y~~~~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~~~~~veF~qL~GM~D~ls~~L~~~------G~~V~k 442 (490)
.||+.|+++||++.+ .++++|||||+.||..+.+++.+ +.+ .++|||||||||+|+++..|+.. |++||+
T Consensus 464 ~~Y~~~a~~LL~~~~--~i~p~fATHN~~sia~~~~la~~-~~~-~~~~EFQ~L~GM~d~l~~~l~~~~~~~~~~~~~Ri 539 (1318)
T PRK11809 464 VSYLACARKLLAVPN--LIYPQFATHNAHTLAAIYHLAGQ-NYY-PGQYEFQCLHGMGEPLYEQVVGKVADGKLNRPCRI 539 (1318)
T ss_pred HHHHHHHHHHhcCCC--CcCceEecCCHHHHHHHHHHHhh-cCC-CCceEEeeccCCCHHHHHHHHHhhhccCCCCceEE
Confidence 999999999998632 26899999999999999888754 332 35899999999999999999753 678999
Q ss_pred EeeccCccccHHHHHHHHHhhhccccccHHHHHHH
Q 042033 443 YMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLM 477 (490)
Q Consensus 443 YvPyG~~~e~lpYL~RRa~EN~~~l~~~~~e~~ll 477 (490)
|+|||++++|||||+||+.||+ ++++|.+++.
T Consensus 540 YaPvG~~~~~l~YLvRRLlEN~---AN~sFv~~~~ 571 (1318)
T PRK11809 540 YAPVGTHETLLAYLVRRLLENG---ANTSFVNRIA 571 (1318)
T ss_pred EEEeechHHhHHHHHHHHhhcc---hhHHHHHHhc
Confidence 9999999999999999999999 8999988765
No 7
>COG0506 PutA Proline dehydrogenase [Amino acid transport and metabolism]
Probab=99.94 E-value=1e-26 Score=242.88 Aligned_cols=306 Identities=22% Similarity=0.196 Sum_probs=233.3
Q ss_pred cCChhhHhhcCCHHHHHHHHHhhhhccCcchhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcceeccCChHHHHHHHHH
Q 042033 60 INDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRR 139 (490)
Q Consensus 60 F~d~~~af~~~st~~Llrs~~v~~l~s~~~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~FvaGEt~~e~~~~i~~ 139 (490)
+....+.|.+.-+|.++-+..++.-+.+..++..+.+ ...+..+..+..+++ .++.+|+.|+|..++......
T Consensus 80 ~~~~~~~lv~~~~~~~~~~~~~v~~~~s~~l~~l~~~------~~~~~~~~~l~~a~~-~l~~~~v~g~~~~~i~~~~~~ 152 (391)
T COG0506 80 AGESAKLLVNAATSGLVLTGKLVNPHLSLKLSQLGQK------LGEPVIRKALDNARR-ILGEAFVHGITIVEIDLEDNK 152 (391)
T ss_pred HhhhHHHHHHHHHhhhhhhhhhhccccccccchhhhc------cccHHHHHHHHHHHH-HHHHHHhhcchhhhhhcchhh
Confidence 3334445555556666555444444322233333221 233444445666666 899999999999999999999
Q ss_pred HHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCCCCC----CCCeEEEEeCCcCchhHHHHhHHHhhhhhcCCC
Q 042033 140 VNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPE----SASFVIAKISAICPMSLLQRVSDLLRWQQRDPS 215 (490)
Q Consensus 140 L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~~~----~~~~vsvKlTaLg~~~ll~~~s~~l~~~~~~~~ 215 (490)
+.+.+++...|..+|.+..+..+..+++.+.+.|+.+.+.+.+ ..+++++|++++.+..
T Consensus 153 l~e~~l~~~~d~~~e~~~~~~~aq~Yl~~~~~~i~~l~~~~~~~~i~~g~~~~~~~vA~~~~~----------------- 215 (391)
T COG0506 153 LTEETLGYSEDLLGEAAYTGALAQAYLKRYLDDIASLGSLSNGLRIVKGAYIEPKLVALHDRY----------------- 215 (391)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCCCccHHHHHhcChh-----------------
Confidence 9999999999999999999999999999999999988766532 2347788888875421
Q ss_pred CCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCchhHHHHHHHHHHH
Q 042033 216 FNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAAL 295 (490)
Q Consensus 216 ~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~q~aId~~~~~l~~ 295 (490)
.. .+....+...+.++.+....++.++ .+-.++.+.. +.+
T Consensus 216 --------------------~~--------~~~~~~~~~~~~~~~~~~~~v~~~d-----------~~l~l~~~~~-~~~ 255 (391)
T COG0506 216 --------------------DV--------DQAYRVKVELMPRLGKLYTRVATHD-----------LELSLDLLEE-LLA 255 (391)
T ss_pred --------------------hH--------HHHHHHHHHHhhhhhhHHHHHHhhc-----------hHhhHHHHHH-Hhh
Confidence 00 2223445566777787777777777 2223443332 222
Q ss_pred hcCcCCCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhc-CCCCCCccCHHHHHHHHHHH
Q 042033 296 SNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASL-GFDSPIHNSIQETHACYNDC 374 (490)
Q Consensus 296 ~~N~~~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~-G~~~Pi~~tk~~Td~~Y~~~ 374 (490)
++--..+..++.++|+|.+++.+..+...+++.+.|++++|||||||||++|..+|+.. +|+.|++..|..||.+|..|
T Consensus 256 e~~l~~~~~l~~~iQ~~~g~~~~~~~~~~~~~~~~g~~i~vrlvkGa~W~se~~ra~~~~~~nlp~~~rk~~td~sy~~~ 335 (391)
T COG0506 256 EPELAAGAGLGFEIQMLYGRCTEVRDFLIELLAKEGYPIRVRLVKGAYWDSEFKRAQAERPWNLPVFTRKVATDASYKAC 335 (391)
T ss_pred hhccccCcccceeeHHhhcccHHHHHHHHHHHHhCCCceEEEeecccchHHHHHHHHHhccCCCceeehhccccccHHHH
Confidence 22223556688999999999999999999999999999999999999999999999988 78999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCCCCCceEEeecccCChHHHHHH
Q 042033 375 ASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGL 433 (490)
Q Consensus 375 ~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~~~~~veF~qL~GM~D~ls~~L 433 (490)
..++++... .+++.|||||..+|..+..++.+++.+ +++|||+|+||++.+.+++
T Consensus 336 ~~~ll~~~~--~~y~~~a~hn~~~ia~~~~~~~~~~~~--~~~e~q~l~gmg~~l~~~v 390 (391)
T COG0506 336 ARLLLEADN--YIYPQIASHNAFTIAAIYALAPELEVP--GRFEFQMLHGMGEPLYKAV 390 (391)
T ss_pred HHHHhcccc--chhhhHhccchhHHHHHHHhccccCCc--cchHHHHhccccHHHHHhh
Confidence 999998532 468999999999999999998888875 3999999999999998875
No 8
>COG0506 PutA Proline dehydrogenase [Amino acid transport and metabolism]
Probab=99.79 E-value=8.1e-19 Score=183.64 Aligned_cols=276 Identities=16% Similarity=0.120 Sum_probs=212.6
Q ss_pred HHHHHHHhhcceeccCChHHHHHHHHHHHhCCceeeccccc-ccCCChHHHHHHHHHHHHHHHHhhCCCC----CCCCeE
Q 042033 113 MCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAV-EHTDDVSECEQNLQGFLQTVQSAKSLPP----ESASFV 187 (490)
Q Consensus 113 ~~~~k~Tf~~~FvaGEt~~e~~~~i~~L~~~Gi~~iLdy~~-E~~~~~~~~d~~~~~~l~~I~~~~~~~~----~~~~~v 187 (490)
..++.+.=-++|++|++..+.+..+++|...|...++|+.+ |...+.+.+.+..+.....++.+..... .-.+.+
T Consensus 27 ~~~~~~~~~~~~v~~~~~~~li~~~~~L~~~~~~~t~d~l~~e~i~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~v~~~~ 106 (391)
T COG0506 27 RALLTKLRAERSVAGEEGVALICLAEALLRIGDNATRDVLIEEFISGGDWASEAGESAKLLVNAATSGLVLTGKLVNPHL 106 (391)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcCCccHHHHHHHHHhccccHHHHHhhhHHHHHHHHHhhhhhhhhhhcccc
Confidence 34444333578999999999999999999999999999999 5566667777776666666666543210 011237
Q ss_pred EEEeCCcCchhHHHHhHHHhhhhhcCCCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 042033 188 IAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECL 267 (490)
Q Consensus 188 svKlTaLg~~~ll~~~s~~l~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~ 267 (490)
|.|+|.+|.+- -+...+.+++++.+++.++.
T Consensus 107 s~~l~~l~~~~-------------------------------------------------~~~~~~~~l~~a~~~l~~~~ 137 (391)
T COG0506 107 SLKLSQLGQKL-------------------------------------------------GEPVIRKALDNARRILGEAF 137 (391)
T ss_pred ccccchhhhcc-------------------------------------------------ccHHHHHHHHHHHHHHHHHH
Confidence 78888886310 01245678999999999999
Q ss_pred hcC-CcEEEcCCccCchhHHHHHHHHHHHhcCcCCCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCch
Q 042033 268 EAN-VPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSS 346 (490)
Q Consensus 268 ~~g-v~v~IDAE~s~~q~aId~~~~~l~~~~N~~~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~ 346 (490)
.+| +...||+|....-+.+-.+..++. ++.+.++...|+||+++.+++..+-+... ++++|+|+|.+.
T Consensus 138 v~g~~~~~i~~~~~~l~e~~l~~~~d~~-----~e~~~~~~~aq~Yl~~~~~~i~~l~~~~~------~~~i~~g~~~~~ 206 (391)
T COG0506 138 VHGITIVEIDLEDNKLTEETLGYSEDLL-----GEAAYTGALAQAYLKRYLDDIASLGSLSN------GLRIVKGAYIEP 206 (391)
T ss_pred hhcchhhhhhcchhhhhhhHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHhhcc------cCccccCCCccH
Confidence 999 888999999875443333454543 34567899999999999999998875422 799999999999
Q ss_pred hhHHHhhcCCCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCCChHH-HHHHHHHHHHhCCCCC--CceEEeecc
Q 042033 347 ESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVES-GQLAAAKATDLGIKGD--QKLEFAQLY 423 (490)
Q Consensus 347 E~~~A~~~G~~~Pi~~tk~~Td~~Y~~~~~~ll~~~~~~~~~~~vATHN~~s-i~~a~~~~~~~gi~~~--~~veF~qL~ 423 (490)
+.. -..++.+.+.+|....+.+... +....+++|||.+. +.....++.+.++... -.++||++|
T Consensus 207 ~~v----------A~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~d~~l~l~~~~~~~~e~~l~~~~~l~~~iQ~~~ 273 (391)
T COG0506 207 KLV----------ALHDRYDVDQAYRVKVELMPRL---GKLYTRVATHDLELSLDLLEELLAEPELAAGAGLGFEIQMLY 273 (391)
T ss_pred HHH----------HhcChhhHHHHHHHHHHHhhhh---hhHHHHHHhhchHhhHHHHHHHhhhhccccCcccceeeHHhh
Confidence 873 2355688889998888877753 22357899999555 8887788888888632 239999999
Q ss_pred c----CChHHHHHHHhCCCCCeeEeeccCccccHHHHHHHHHhh
Q 042033 424 G----MAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEEN 463 (490)
Q Consensus 424 G----M~D~ls~~L~~~G~~V~kYvPyG~~~e~lpYL~RRa~EN 463 (490)
| +.|.+...+++.||++++|+||| ..|..|..||.+|-
T Consensus 274 g~~~~~~~~~~~~~~~~g~~i~vrlvkG--a~W~se~~ra~~~~ 315 (391)
T COG0506 274 GRCTEVRDFLIELLAKEGYPIRVRLVKG--AYWDSEFKRAQAER 315 (391)
T ss_pred cccHHHHHHHHHHHHhCCCceEEEeecc--cchHHHHHHHHHhc
Confidence 9 99999999999999999999999 59999999999993
No 9
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=96.58 E-value=0.0011 Score=71.60 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=27.8
Q ss_pred hCCCCCeeEeeccCccccHHHHHHHHHhhhc
Q 042033 435 NAGFQVSKYMPFGPVDKIIPYLLRRAEENRG 465 (490)
Q Consensus 435 ~~G~~V~kYvPyG~~~e~lpYL~RRa~EN~~ 465 (490)
+.|.+||.|.|.|.+++.++||+||+.||+.
T Consensus 5 kl~r~cRiYAPVGtHetLLaYLVRRLLENGA 35 (769)
T COG4230 5 KLNRPCRIYAPVGTHETLLAYLVRRLLENGA 35 (769)
T ss_pred ccCCceEEEccCcchHHHHHHHHHHHHhcCC
Confidence 4577999999999999999999999999743
No 10
>KOG0186 consensus Proline oxidase [Amino acid transport and metabolism]
Probab=95.89 E-value=0.0024 Score=67.83 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhh-hccCcchhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcceeccCChHHHHHHHHHHHhCCceeecc
Q 042033 72 TTKLIRAAANLH-LAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLV 150 (490)
Q Consensus 72 t~~Llrs~~v~~-l~s~~~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~FvaGEt~~e~~~~i~~L~~~Gi~~iLd 150 (490)
+|+|+|+.+|++ ...+++++..+ ++++ ....++...+...++.+||+ |||||+.++.+.+..+++..|..+++|
T Consensus 2 ~~~~~r~~~~~r~~s~~s~~~~~~--~l~~--~~~~Lgk~sf~~~~p~~~~~-~~~ge~~~~~l~~~~~~r~f~~~~i~d 76 (506)
T KOG0186|consen 2 ATRLVRTNFILRIASAFSFLGPSS--VLKS--TRVILGKRSFVKLTPETFLG-FVAGEQTEANLRLSDKARAFGGKPILD 76 (506)
T ss_pred chhhHHHHHHHhhhhhhcccCCcc--cccc--ccccccchhhcccCCCCCCC-CCCcccchhhhhhhHHHHhccCCCccc
Confidence 689999999999 33344444332 3432 22222333678888999999 999999999999999999999999999
Q ss_pred cccccCC
Q 042033 151 YAVEHTD 157 (490)
Q Consensus 151 y~~E~~~ 157 (490)
|..+.+.
T Consensus 77 ~~~~~~~ 83 (506)
T KOG0186|consen 77 YLVSTDL 83 (506)
T ss_pred hhhhhhh
Confidence 9988753
No 11
>PF14850 Pro_dh-DNA_bdg: DNA-binding domain of Proline dehydrogenase; PDB: 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A 3ITG_B 3E2R_A 1TJ1_A 1TIW_A ....
Probab=90.23 E-value=0.13 Score=45.23 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=39.6
Q ss_pred cCChhhHhhcCCHHHHHHHHHhhhhccCcchhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcce
Q 042033 60 INDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHF 124 (490)
Q Consensus 60 F~d~~~af~~~st~~Llrs~~v~~l~s~~~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~F 124 (490)
+++.++.|.+.|||.|.-+..+++.-........-..++++ ++.|.+|..+..+|| .+.+||
T Consensus 53 ~g~s~s~~VNastwgL~ltg~~~~~~~~~~~~~~l~~l~~r--~GePvIR~A~~~AM~-~mG~qF 114 (114)
T PF14850_consen 53 LGKSDSLFVNASTWGLMLTGRLLKPDDEKNPAGALRRLIKR--LGEPVIRKAVRQAMR-IMGEQF 114 (114)
T ss_dssp HHHHHCTTTSCCHHHHHS------TT-HHHHHHHHHHHCCC--C-HHHHHHHHHHHHH-HHHHHG
T ss_pred cCCCchHHHHHHHHHHHHHccccCCccccCHHHHHHHHHHH--cCChHHHHHHHHHHH-HHHhcC
Confidence 44668899999999999999998887733333222334443 799999999999998 777777
No 12
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.33 E-value=22 Score=35.24 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHhCCceee-ccccc-----ccCCChHHHHHHHHHHHHHHHHhhCCCCCCCCeEEEEeCCcCchhHHHH
Q 042033 129 NAPEATDCVRRVNDAGLRGM-LVYAV-----EHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQR 202 (490)
Q Consensus 129 t~~e~~~~i~~L~~~Gi~~i-Ldy~~-----E~~~~~~~~d~~~~~~l~~I~~~~~~~~~~~~~vsvKlTaLg~~~ll~~ 202 (490)
+.+++....+.+.+.|+... +...+ -...+.+..++.++.+.++|+.++... .+.|.+ .+....
T Consensus 50 ~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG---~~~v~~--~~~~~~----- 119 (284)
T PRK13210 50 SKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLG---IRTIQL--AGYDVY----- 119 (284)
T ss_pred CHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhC---CCEEEE--CCcccc-----
Confidence 45567777778888998753 32221 112345556677888888888887654 234433 221100
Q ss_pred hHHHhhhhhcCCCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCc
Q 042033 203 VSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFV 282 (490)
Q Consensus 203 ~s~~l~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~ 282 (490)
+ . ......++.+.++++++|+.|+++||.+.|-.....+
T Consensus 120 --------------------------------~----~-----~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~ 158 (284)
T PRK13210 120 --------------------------------Y----E-----EKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPF 158 (284)
T ss_pred --------------------------------c----c-----cccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCccc
Confidence 0 0 0112456788999999999999999999997765443
No 13
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=85.26 E-value=25 Score=35.02 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=68.6
Q ss_pred cCChHHHHHHHHHHHhCCceee-cccccc-----cCCChHHHHHHHHHHHHHHHHhhCCCCCCCCeEEEEeCCcCchhHH
Q 042033 127 GENAPEATDCVRRVNDAGLRGM-LVYAVE-----HTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLL 200 (490)
Q Consensus 127 GEt~~e~~~~i~~L~~~Gi~~i-Ldy~~E-----~~~~~~~~d~~~~~~l~~I~~~~~~~~~~~~~vsvKlTaLg~~~ll 200 (490)
+.+.++.....+.|.+.|+... +..... ...+++..++.++.+.++|+.++... .+.|.+ .+ +..
T Consensus 48 ~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG---~~~v~~--~~-~~~--- 118 (279)
T TIGR00542 48 DWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLG---IRTIQL--AG-YDV--- 118 (279)
T ss_pred CCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhC---CCEEEe--cC-ccc---
Confidence 4467777778888999999853 332211 12244555667778888888887654 224443 11 000
Q ss_pred HHhHHHhhhhhcCCCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcc
Q 042033 201 QRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDT 280 (490)
Q Consensus 201 ~~~s~~l~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s 280 (490)
... ......++.+.++++++++.|+++||+|.+-...+
T Consensus 119 ---------------------------------------~~~---~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~ 156 (279)
T TIGR00542 119 ---------------------------------------YYE---EHDEETRRRFREGLKEAVELAARAQVTLAVEIMDT 156 (279)
T ss_pred ---------------------------------------ccC---cCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCC
Confidence 000 01134577889999999999999999999988755
Q ss_pred CchhHHH
Q 042033 281 FVQPAID 287 (490)
Q Consensus 281 ~~q~aId 287 (490)
.+-.+++
T Consensus 157 ~~~~t~~ 163 (279)
T TIGR00542 157 PFMSSIS 163 (279)
T ss_pred chhcCHH
Confidence 4433333
No 14
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.10 E-value=41 Score=33.43 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHhCCceee-ccccc----c-cCCChHHHHHHHHHHHHHHHHhhCCCCCCCCeEEEEeCCcCchhHHHH
Q 042033 129 NAPEATDCVRRVNDAGLRGM-LVYAV----E-HTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQR 202 (490)
Q Consensus 129 t~~e~~~~i~~L~~~Gi~~i-Ldy~~----E-~~~~~~~~d~~~~~~l~~I~~~~~~~~~~~~~vsvKlTaLg~~~ll~~ 202 (490)
+.+++...-+.+++.|+... +.... . ...+++..+..++.+.++|+.++... .+.|.+ .+...
T Consensus 55 ~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG---~~~i~~--~~~~~------ 123 (283)
T PRK13209 55 SREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLG---IRVIQL--AGYDV------ 123 (283)
T ss_pred CHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcC---CCEEEE--CCccc------
Confidence 45566666667778888752 22211 1 12234445566777888888887654 234433 22100
Q ss_pred hHHHhhhhhcCCCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccC
Q 042033 203 VSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTF 281 (490)
Q Consensus 203 ~s~~l~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~ 281 (490)
+.+...+..++.+.+.+++||+.|+++||.|.|..-...
T Consensus 124 ----------------------------------------~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~ 162 (283)
T PRK13209 124 ----------------------------------------YYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTP 162 (283)
T ss_pred ----------------------------------------cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCc
Confidence 000112345677889999999999999999999876443
No 15
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=81.24 E-value=45 Score=30.75 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCc
Q 042033 250 NELQSAHQRLQKLCQECLEANVPLTVDAEDTFV 282 (490)
Q Consensus 250 ~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~ 282 (490)
..++.+.++++++++.|+++||.|.+--...+.
T Consensus 105 ~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~ 137 (213)
T PF01261_consen 105 ENWERLAENLRELAEIAEEYGVRIALENHPGPF 137 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSS
T ss_pred HHHHHHHHHHHHHHhhhhhhcceEEEecccCcc
Confidence 577889999999999999999999988776554
No 16
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.68 E-value=75 Score=31.30 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEcC
Q 042033 250 NELQSAHQRLQKLCQECLEANVPLTVDA 277 (490)
Q Consensus 250 ~~~~~~~~rl~~i~~~A~~~gv~v~IDA 277 (490)
..++.+.++++++++.|+++||+|.|.-
T Consensus 122 ~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 122 VIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 4667889999999999999999998874
No 17
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=75.12 E-value=69 Score=31.81 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEcCCc
Q 042033 249 ENELQSAHQRLQKLCQECLEANVPLTVDAED 279 (490)
Q Consensus 249 ~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~ 279 (490)
+..++.+.++++++++.|+++||+|.|--..
T Consensus 115 ~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 115 EEGLKRVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 3467788999999999999999999987654
No 18
>PRK10785 maltodextrin glucosidase; Provisional
Probab=66.68 E-value=14 Score=41.54 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=26.0
Q ss_pred cceeccCChHHHHHHHHHHHhCCceee-cccccc
Q 042033 122 EHFCAGENAPEATDCVRRVNDAGLRGM-LVYAVE 154 (490)
Q Consensus 122 ~~FvaGEt~~e~~~~i~~L~~~Gi~~i-Ldy~~E 154 (490)
..|+|| |...+++.+..|++.||.++ |.-.-|
T Consensus 171 ~~f~GG-Dl~GI~~kLdYL~~LGv~~I~L~Pif~ 203 (598)
T PRK10785 171 STFYGG-DLDGISEKLPYLKKLGVTALYLNPIFT 203 (598)
T ss_pred ccccCc-CHHHHHHHHHHHHHcCCCEEEeCCccc
Confidence 468877 79999999999999999988 555433
No 19
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=61.18 E-value=1e+02 Score=30.12 Aligned_cols=29 Identities=7% Similarity=0.059 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEcCC
Q 042033 250 NELQSAHQRLQKLCQECLEANVPLTVDAE 278 (490)
Q Consensus 250 ~~~~~~~~rl~~i~~~A~~~gv~v~IDAE 278 (490)
+.++.+.+.++++|+.|++.||.+.+-..
T Consensus 116 ~~~~~~~~~l~~l~~~A~~~gi~l~lE~~ 144 (254)
T TIGR03234 116 EARATLVENLRYAADALDRIGLTLLIEPI 144 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 35667889999999999999999999765
No 20
>PRK12677 xylose isomerase; Provisional
Probab=49.30 E-value=2.2e+02 Score=30.31 Aligned_cols=87 Identities=8% Similarity=0.040 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CcEEEcCCcc-----CchhHHHHHHHHHHHhcCcCCCCceee---eehhcchhhHH
Q 042033 249 ENELQSAHQRLQKLCQECLEAN--VPLTVDAEDT-----FVQPAIDYLTYNAALSNNKAGKPIVYN---TIQAYLKDAKE 318 (490)
Q Consensus 249 ~~~~~~~~~rl~~i~~~A~~~g--v~v~IDAE~s-----~~q~aId~~~~~l~~~~N~~~~p~V~~---T~QaYLk~s~~ 318 (490)
...++.+.+.|++||+.|.++| |+|.|..... .+-++++.... +..+.+. ...|+. +..+.+.. .
T Consensus 149 ~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l~t~~~al~-li~~lg~--~~~vGv~lD~gH~~m~g--~ 223 (384)
T PRK12677 149 RAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILLPTVGHALA-FIATLEH--PEMVGLNPEVGHEQMAG--L 223 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeeeCCHHHHHH-HHHHhCC--CccEEEeeechHHHhcC--C
Confidence 3467788899999999999955 9998877532 24455554443 2333331 123554 45554432 2
Q ss_pred HHHHHHHHHHHcCCCceeEEec
Q 042033 319 RLFLATEAAEKMGVPMGFKLVR 340 (490)
Q Consensus 319 ~L~~~l~~A~~~g~~~gvKLVR 340 (490)
+....+..+...+.-++|=+.-
T Consensus 224 n~~~~i~~~l~~~kL~HvHlnD 245 (384)
T PRK12677 224 NFTHGIAQALWAGKLFHIDLNG 245 (384)
T ss_pred CHHHHHHHHHhCCcEEEEEecC
Confidence 3333333333346667777775
No 21
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=41.43 E-value=3.4e+02 Score=28.87 Aligned_cols=88 Identities=10% Similarity=0.048 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCcEEEcCCcc-----CchhHHHHHHHHHHHhcCcCCCCc-eee---eehhcchhhH
Q 042033 249 ENELQSAHQRLQKLCQECLEA--NVPLTVDAEDT-----FVQPAIDYLTYNAALSNNKAGKPI-VYN---TIQAYLKDAK 317 (490)
Q Consensus 249 ~~~~~~~~~rl~~i~~~A~~~--gv~v~IDAE~s-----~~q~aId~~~~~l~~~~N~~~~p~-V~~---T~QaYLk~s~ 317 (490)
...++.+.+.++.+|+.|.++ ||+|.|..-.. ++=++++.... +.... +.|. |+. |+.+.+..
T Consensus 150 ~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~~ll~T~~~al~-li~~v---~~pn~vgl~lDvgH~~~~g-- 223 (382)
T TIGR02631 150 RAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGDILLPTVGHALA-FIETL---ERPELFGLNPETGHEQMAG-- 223 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcceecCCHHHHHH-HHHHc---CCccceeEEEechhHhhcC--
Confidence 456788899999999999997 58888865422 23334443332 22232 3344 455 44554332
Q ss_pred HHHHHHHHHHHHcCCCceeEEeccC
Q 042033 318 ERLFLATEAAEKMGVPMGFKLVRGA 342 (490)
Q Consensus 318 ~~L~~~l~~A~~~g~~~gvKLVRGA 342 (490)
.++...++.+...+..+.|=+-.+-
T Consensus 224 ~n~~~~i~~~l~~~kl~HvhlnD~~ 248 (382)
T TIGR02631 224 LNFTHGIAQALWAGKLFHIDLNGQR 248 (382)
T ss_pred CCHHHHHHHHHhCCCEEEEecCCCC
Confidence 3555555555445767777777643
No 22
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=39.08 E-value=1.6e+02 Score=29.45 Aligned_cols=67 Identities=13% Similarity=0.255 Sum_probs=38.4
Q ss_pred eccCChHHHHHHHHHHHhCCceee-cccccccCCChHHHHHHHHHHHHHHHHhhCCCCCCCCeEEEEeCCc
Q 042033 125 CAGENAPEATDCVRRVNDAGLRGM-LVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAI 194 (490)
Q Consensus 125 vaGEt~~e~~~~i~~L~~~Gi~~i-Ldy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~~~~~~~vsvKlTaL 194 (490)
++|.+.++..+.++.+.+.|+..+ |+.+...........+..+...+.++.+.+.- +. -|.||++..
T Consensus 105 i~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~-pv~vKl~~~ 172 (289)
T cd02810 105 VGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DI-PLLVKLSPY 172 (289)
T ss_pred eccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CC-CEEEEeCCC
Confidence 467799999999999999998766 77664443221111112223333333333211 12 478998864
No 23
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=37.33 E-value=3.1e+02 Score=26.83 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEcCC
Q 042033 250 NELQSAHQRLQKLCQECLEANVPLTVDAE 278 (490)
Q Consensus 250 ~~~~~~~~rl~~i~~~A~~~gv~v~IDAE 278 (490)
+.++.+.+++.++++.|++.||++.+-..
T Consensus 117 ~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 145 (258)
T PRK09997 117 QIHATLVENLRYAANMLMKEDILLLIEPI 145 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 34677889999999999999999999753
No 24
>PRK03906 mannonate dehydratase; Provisional
Probab=35.85 E-value=1.8e+02 Score=31.12 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcc
Q 042033 249 ENELQSAHQRLQKLCQECLEANVPLTVDAEDT 280 (490)
Q Consensus 249 ~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s 280 (490)
++.++.+.+-|++||..|++.||++.|-..+.
T Consensus 206 e~lw~~l~~fL~~v~p~Aee~GV~LaihPdDP 237 (385)
T PRK03906 206 EKLRENLAYFLKAIIPVAEEVGVKMAIHPDDP 237 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCc
Confidence 45778899999999999999999999987654
No 25
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=33.46 E-value=3.3e+02 Score=29.25 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccC
Q 042033 248 EENELQSAHQRLQKLCQECLEANVPLTVDAEDTF 281 (490)
Q Consensus 248 e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~ 281 (490)
+++.++.+..=|++||-.|.+.||++.|---+..
T Consensus 205 ~e~lwenl~yFL~~ViPvAEe~GV~LAiHPDDPP 238 (394)
T TIGR00695 205 EEKLRDNLAFFLQEILPVAEEYGVQMAIHPDDPP 238 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEECCCCCC
Confidence 3457788888899999999999999998766553
No 26
>smart00642 Aamy Alpha-amylase domain.
Probab=33.15 E-value=39 Score=31.49 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEcCCc
Q 042033 256 HQRLQKLCQECLEANVPLTVDAED 279 (490)
Q Consensus 256 ~~rl~~i~~~A~~~gv~v~IDAE~ 279 (490)
.+.+++++++|+++|++|++|.=-
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Confidence 356889999999999999999754
No 27
>PRK12677 xylose isomerase; Provisional
Probab=29.27 E-value=6.4e+02 Score=26.81 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEE---cCCccCchhHHHHHHHHHHHhcCcCCCCceeeeehhcchhhHHHHHHHHHHH
Q 042033 251 ELQSAHQRLQKLCQECLEANVPLTV---DAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAA 327 (490)
Q Consensus 251 ~~~~~~~rl~~i~~~A~~~gv~v~I---DAE~s~~q~aId~~~~~l~~~~N~~~~p~V~~T~QaYLk~s~~~L~~~l~~A 327 (490)
..+.+++.+.+-++.|++.|+..++ --+.+++. -...+...+++..+-|..+.+.|
T Consensus 108 ~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~---------------------~~~d~~~a~~~~~eaL~~l~~~A 166 (384)
T PRK12677 108 VRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYD---------------------AAKDVRAALDRYREAIDLLAAYV 166 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCc---------------------ccCCHHHHHHHHHHHHHHHHHHH
Confidence 4456688899999999999987432 11111110 00124556677778888888888
Q ss_pred HHcC
Q 042033 328 EKMG 331 (490)
Q Consensus 328 ~~~g 331 (490)
++.|
T Consensus 167 ~~~G 170 (384)
T PRK12677 167 KDQG 170 (384)
T ss_pred HhcC
Confidence 8866
No 28
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=28.98 E-value=67 Score=31.35 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCcEEEeCCChHHHHH
Q 042033 377 YMLEKIADGSGAVVLATHNVESGQL 401 (490)
Q Consensus 377 ~ll~~~~~~~~~~~vATHN~~si~~ 401 (490)
.+++.+.+-+..+.+||||...+..
T Consensus 178 ~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 178 RLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred HHHHHHhhcCcEEEEEeccHHHHHh
Confidence 3556666666789999999988654
No 29
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=28.46 E-value=6.1e+02 Score=26.00 Aligned_cols=62 Identities=5% Similarity=0.030 Sum_probs=36.5
Q ss_pred cCChHHHHHHHHHHHhCCceeeccccccc-CCChHHHHHHHHHHHHHHHHhhCCCCCCCCeEEEEeCCcC
Q 042033 127 GENAPEATDCVRRVNDAGLRGMLVYAVEH-TDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAIC 195 (490)
Q Consensus 127 GEt~~e~~~~i~~L~~~Gi~~iLdy~~E~-~~~~~~~d~~~~~~l~~I~~~~~~~~~~~~~vsvKlTaLg 195 (490)
|-|.++..+.++.+++.|+....++..=- ..+++ +..+.++++++.+...+ ..|++=+..+.
T Consensus 151 g~t~~~~~~ai~~~~~~Gi~v~~~~i~G~P~~se~---ea~ed~~~ti~~~~~l~----~~vs~~~l~v~ 213 (313)
T TIGR01210 151 GSTFEDFIRAAELARKYGAGVKAYLLFKPPFLSEK---EAIADMISSIRKCIPVT----DTVSINPTNVQ 213 (313)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCChh---hhHHHHHHHHHHHHhcC----CcEEEECCEEe
Confidence 44888999999999999998654433111 11222 34555666666665442 25555444443
No 30
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.27 E-value=6.3e+02 Score=25.47 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHhCCcee-ecccccc-----cCCChHHHHHHHHHHHHHHHHhhCCCCCCCCeEEEEeCCcCchhHHHHh
Q 042033 130 APEATDCVRRVNDAGLRG-MLVYAVE-----HTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRV 203 (490)
Q Consensus 130 ~~e~~~~i~~L~~~Gi~~-iLdy~~E-----~~~~~~~~d~~~~~~l~~I~~~~~~~~~~~~~vsvKlTaLg~~~ll~~~ 203 (490)
.+|.....+.+.+.|++. ++-+++- +..|+.--++..+.+.++|..+.+++. =.|-+-|-
T Consensus 53 ~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGI-----RtIQLAGY--------- 118 (287)
T COG3623 53 KEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGI-----RTIQLAGY--------- 118 (287)
T ss_pred HHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCc-----eeEeeccc---------
Confidence 345556666777777764 3444432 134555556778889999998876532 12222222
Q ss_pred HHHhhhhhcCCCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCch
Q 042033 204 SDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQ 283 (490)
Q Consensus 204 s~~l~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~q 283 (490)
+++ |+ +.+....+...+.++..|+.|.+.+|-+-|.-=++.+-
T Consensus 119 ----------------------DVY------YE---------~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDtpfm 161 (287)
T COG3623 119 ----------------------DVY------YE---------EADEETRQRFIEGLKWAVELAARAQVMLAVEIMDTPFM 161 (287)
T ss_pred ----------------------eee------ec---------cCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecccHHH
Confidence 111 21 23345677889999999999999999888877777776
Q ss_pred hHHHHHHHHHHHhcCcC---CCCceeeeehhcchhhHHHHHHHHHHHHHcCC-CceeEEeccCCCchhh
Q 042033 284 PAIDYLTYNAALSNNKA---GKPIVYNTIQAYLKDAKERLFLATEAAEKMGV-PMGFKLVRGAYMSSES 348 (490)
Q Consensus 284 ~aId~~~~~l~~~~N~~---~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~-~~gvKLVRGAY~e~E~ 348 (490)
-+|..+.. +-.+-|.+ -+|-|||.-|= ..++...+.+ |. ++-.==+|--|-.+|.
T Consensus 162 ~sIsk~~~-~~~~I~sP~f~vYPDiGNlsaw-----~ndv~~El~l----G~~~I~aiHlKDTy~vte~ 220 (287)
T COG3623 162 NSISKWLK-YDKYINSPWFTVYPDIGNLSAW-----NNDVQSELQL----GIDKIVAIHLKDTYAVTET 220 (287)
T ss_pred HHHHHHHH-HHHHhCCCcEEecCCcccHhhh-----hhhHHHHHHc----CcCceEEEEeccccccccc
Confidence 67766553 22333321 35667775442 2233333322 21 1222235777887776
No 31
>PF06514 PsbU: Photosystem II 12 kDa extrinsic protein (PsbU); InterPro: IPR010527 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII extrinsic protein PsbU, which forms part of the OEC in cyanobacteria and red algae. PsbU acts to stabilise the oxygen-evolving machinery of PSII against heat-induced inactivation, which is crucial for cellular thermo-tolerance [].; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 3BZ1_U 3KZI_U 3PRQ_U 2AXT_u 3BZ2_U 4FBY_U 3PRR_U 1S5L_U 3A0H_U 3ARC_U ....
Probab=25.57 E-value=34 Score=29.12 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=25.4
Q ss_pred ceEEeecccCChHHHHHHHhCCCCCeeEeeccCccccHH
Q 042033 416 KLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIP 454 (490)
Q Consensus 416 ~veF~qL~GM~D~ls~~L~~~G~~V~kYvPyG~~~e~lp 454 (490)
--.|+|+=||-+.+.-.++++| ||.+++|++-
T Consensus 22 vr~f~~~pGmYPtlA~kIv~na-------PY~sveDvl~ 53 (93)
T PF06514_consen 22 VRAFRQFPGMYPTLAGKIVSNA-------PYKSVEDVLN 53 (93)
T ss_dssp GGGGCCSTTTTCCHHHHHHHS----------SSGGGGCC
T ss_pred HHHHHHCCCCCHHHHHHHHhCC-------CCCCHHHHHh
Confidence 4579999999999999999886 8999999863
No 32
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=25.20 E-value=61 Score=31.77 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEcCCc
Q 042033 256 HQRLQKLCQECLEANVPLTVDAED 279 (490)
Q Consensus 256 ~~rl~~i~~~A~~~gv~v~IDAE~ 279 (490)
.+-+++++++|+++|++|++|.=-
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhhhhhhhhccccccceEEEeeec
Confidence 356889999999999999999764
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=23.14 E-value=2.2e+02 Score=33.51 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=24.4
Q ss_pred ceeccCChHHHHHHHHHHHhCCceee
Q 042033 123 HFCAGENAPEATDCVRRVNDAGLRGM 148 (490)
Q Consensus 123 ~FvaGEt~~e~~~~i~~L~~~Gi~~i 148 (490)
||-.|=|.+++.+.+..|++.||..+
T Consensus 8 Q~~~~~tf~~~~~~L~YL~~LGv~~V 33 (825)
T TIGR02401 8 QLRAGFTFDDAAALLPYLKSLGVSHL 33 (825)
T ss_pred eeCCCCCHHHHHHhhHHHHHcCCCEE
Confidence 88899999999999999999999887
No 34
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.80 E-value=5.4e+02 Score=26.07 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEc
Q 042033 256 HQRLQKLCQECLEANVPLTVD 276 (490)
Q Consensus 256 ~~rl~~i~~~A~~~gv~v~ID 276 (490)
+.+..++++.|+++|+.+++-
T Consensus 265 i~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 265 LTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 567789999999999999985
No 35
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=21.77 E-value=5.5e+02 Score=26.46 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=21.8
Q ss_pred eccCChHHHHHHHHHHHhCCceee-cccc
Q 042033 125 CAGENAPEATDCVRRVNDAGLRGM-LVYA 152 (490)
Q Consensus 125 vaGEt~~e~~~~i~~L~~~Gi~~i-Ldy~ 152 (490)
+.|.+.++..+.++.+.+.|+..+ |+.+
T Consensus 106 i~g~~~~~~~~~a~~~~~~gad~iElN~s 134 (325)
T cd04739 106 LNGVSAGGWVDYARQIEEAGADALELNIY 134 (325)
T ss_pred eCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 357888888999999988887665 6665
No 36
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=21.42 E-value=9e+02 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=14.9
Q ss_pred cchhhHHHHHHHHHHHHHcCC
Q 042033 312 YLKDAKERLFLATEAAEKMGV 332 (490)
Q Consensus 312 YLk~s~~~L~~~l~~A~~~g~ 332 (490)
.-+...+++...++++.+.|.
T Consensus 163 v~~~N~~~i~~~~~~~~~lgv 183 (378)
T PRK05301 163 IHRHNIDQIPRIIELAVELGA 183 (378)
T ss_pred eecCCHHHHHHHHHHHHHcCC
Confidence 455667778788888877664
No 37
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=21.24 E-value=7.3e+02 Score=25.52 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHHHHcCCC
Q 042033 312 YLKDAKERLFLATEAAEKMGVP 333 (490)
Q Consensus 312 YLk~s~~~L~~~l~~A~~~g~~ 333 (490)
.-+...+++...++++.+.|..
T Consensus 154 v~~~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 154 IHRHNIDQIPEIIELAIELGAD 175 (358)
T ss_pred eccCCHHHHHHHHHHHHHcCCC
Confidence 5677778888888888887743
No 38
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.78 E-value=8.1e+02 Score=24.05 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcC---CcEEEcCCccCc-----hhHHHHHHHHHHHhcCcCC----CCceeee---ehhcchhhHHHHHH
Q 042033 258 RLQKLCQECLEAN---VPLTVDAEDTFV-----QPAIDYLTYNAALSNNKAG----KPIVYNT---IQAYLKDAKERLFL 322 (490)
Q Consensus 258 rl~~i~~~A~~~g---v~v~IDAE~s~~-----q~aId~~~~~l~~~~N~~~----~p~V~~T---~QaYLk~s~~~L~~ 322 (490)
.+.+.++.|++.| |-+.+|.-..+. ...++.+... +.++|-.. .|..++- -.....++.+.+..
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~ 89 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAI-AEEGPSICLSVHAPYLINLASPDKEKREKSIERLKD 89 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHH-HHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHH
Confidence 3566778888888 455666543332 2455655543 33442101 1111111 11235667788999
Q ss_pred HHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCCChH-----
Q 042033 323 ATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVE----- 397 (490)
Q Consensus 323 ~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~Pi~~tk~~Td~~Y~~~~~~ll~~~~~~~~~~~vATHN~~----- 397 (490)
.++.|++.|.+ .|.+.-|.+.. ...+++-+.+...++.+.+.....++.+.+=+|...
T Consensus 90 ~i~~A~~lG~~-~v~~~~g~~~~----------------~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~ 152 (279)
T cd00019 90 EIERCEELGIR-LLVFHPGSYLG----------------QSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIG 152 (279)
T ss_pred HHHHHHHcCCC-EEEECCCCCCC----------------CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCC
Confidence 99999999976 46666665432 123444455556666666654444456666666433
Q ss_pred -HHHHHHHHHHHhC-CC-CCCceEEeecccCChH------HHHHHHh----------------CCC-----CCeeEeecc
Q 042033 398 -SGQLAAAKATDLG-IK-GDQKLEFAQLYGMAEA------LSYGLRN----------------AGF-----QVSKYMPFG 447 (490)
Q Consensus 398 -si~~a~~~~~~~g-i~-~~~~veF~qL~GM~D~------ls~~L~~----------------~G~-----~V~kYvPyG 447 (490)
+...+.+++++.+ -+ -.-.+.++.++-+..+ +...+.+ .+. ....++|+|
T Consensus 153 ~t~~~~~~li~~v~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~~~~~~~~~~G 232 (279)
T cd00019 153 SSFEELKEIIDLIKEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELGSGKDRHEPIG 232 (279)
T ss_pred CCHHHHHHHHHhcCCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCcccCCCccccCCC
Confidence 5566677777766 33 1123455555533333 2222211 111 123478888
Q ss_pred CccccHHHHHHHHHhhh
Q 042033 448 PVDKIIPYLLRRAEENR 464 (490)
Q Consensus 448 ~~~e~lpYL~RRa~EN~ 464 (490)
.-+--++-+++-+.+.+
T Consensus 233 ~G~id~~~~l~~L~~~~ 249 (279)
T cd00019 233 EGDIDGEELFKELKKDP 249 (279)
T ss_pred CCCcCCHHHHHHHHhCc
Confidence 75544666677777644
No 39
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=20.09 E-value=1.2e+02 Score=28.27 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=47.6
Q ss_pred ehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCC-CCCccCHHHHHHHHHHHHHHHH
Q 042033 309 IQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFD-SPIHNSIQETHACYNDCASYML 379 (490)
Q Consensus 309 ~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~-~Pi~~tk~~Td~~Y~~~~~~ll 379 (490)
+.-|.-++.+++...++.+++.| +..|=|.... ...|++.|.+ .+++++++....+++..++.+-
T Consensus 103 i~~~~~~~~~e~~~~i~~~~~~G----~~viVGg~~~--~~~A~~~gl~~v~i~sg~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 103 IKIYPYDSEEEIEAAIKQAKAEG----VDVIVGGGVV--CRLARKLGLPGVLIESGEESIRRALEEALRIAR 168 (176)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTT------EEEESHHH--HHHHHHTTSEEEESS--HHHHHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcC----CcEEECCHHH--HHHHHHcCCcEEEEEecHHHHHHHHHHHHHHHH
Confidence 55566678999999999999888 7788887765 4578999998 6788888888777777766543
Done!