BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042034
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/397 (22%), Positives = 174/397 (43%), Gaps = 28/397 (7%)
Query: 22 KVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQ 81
KVLI+D ++ VS E++ + + LVE I + +E + L+AVY + P+ E+++
Sbjct: 26 KVLIVDQLSMRMVSACCKMHEIMSEGITLVE---DINRRREPLPLLEAVYLITPTEESVK 82
Query: 82 HLRRQLANPRFGEY---HLFFSNMLKDTQIHILADSDXXXXXXXXXXFYADFVAVEPYHF 138
L NP +Y H+FF+ + L S F+ E F
Sbjct: 83 CLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIF 142
Query: 139 TLNIPSNHLYMLPAVVDPSSLQHFC---DRVVDGIAAVFLALKRRPVIRYQRTSDIAKRI 195
+L+ P +PS Q +R + IA + L P +RY+ D
Sbjct: 143 SLDSPDT----FQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASF 198
Query: 196 AQETTKLM--YQQESGLFDFRRTEISPXXXXXXXXXXPVTPLLNQWTYQAMVHELIGIQD 253
AQ + + Y+ + + P++PLL++ T+QAM ++L+ I++
Sbjct: 199 AQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIEN 258
Query: 254 NKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSI 313
+ + G ++EV+L E+D + +++ + N+ + + +F + +
Sbjct: 259 DVYKYVNTGGNEVPEKEVLL-DEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAA 317
Query: 314 QT--IEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQ 371
I+D+++ ++ P+Y+K S H+ L + K ++ L + EQ+LA G
Sbjct: 318 DKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLC-KVEQDLAM--GT 374
Query: 372 GAAFEAVTNLLNN-------ENVSDIDRLRLVMLYAL 401
A E + + + N + +S D++R+++LY +
Sbjct: 375 DADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYII 411
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 183/433 (42%), Gaps = 28/433 (6%)
Query: 13 RMLQDISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYF 72
R + D KVL++D + +S SE+L V +VE + K ++ + VYF
Sbjct: 17 RSVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVE---DVSKQRKVLPQFHGVYF 73
Query: 73 LRPSSENIQHLRRQLAN--PRFGEYHLFFSNMLKDTQIHILADSDXXXXXXXXXXFYADF 130
+ P+ EN+ ++ R A+ P + HLFF + + D + LA + F
Sbjct: 74 IEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLF 133
Query: 131 VAVEPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSD 190
+ E FTLN P + L S + D +V ++ + + P++RY TS
Sbjct: 134 IPKEHRVFTLNEP----HGLVQYYGSRSSSYNIDHLVRRLSTLCTTMNVAPIVRYSSTST 189
Query: 191 IA-KRIAQETTKLMYQQES-GLFDFRRTEISPXXXXXXXXXXPVTPLLNQWTYQAMVHEL 248
+R+A + K + S GL + R ++ +PL+++ TYQA ++L
Sbjct: 190 PGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPLVHELTYQAAAYDL 249
Query: 249 IGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEF----- 303
+ I+++ ++ ++QQ V+ E D + + + ++ +K DEF
Sbjct: 250 LNIENDIYSYSTVDAGGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSAR 309
Query: 304 --QQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSET 361
Q + S Q + + +++ P++++ S H+ + ++ M + ++
Sbjct: 310 RLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAIN-MAFSSTIDSCTKA 368
Query: 362 EQELACNGGQGAA-----FEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFN 416
EQ + Q V +++ + VS D+LR +ML L S +L L +
Sbjct: 369 EQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELNNLLD 428
Query: 417 K----LASRSAKY 425
SRSA Y
Sbjct: 429 NANIATPSRSAIY 441
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 172/398 (43%), Gaps = 28/398 (7%)
Query: 21 MKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENI 80
KVLI+D + VS E+ + + LVE I + +E + L+AVY + P+ E++
Sbjct: 25 WKVLIVDQLSXRXVSACCKXHEIXSEGITLVE---DINRRREPLPLLEAVYLITPTEESV 81
Query: 81 QHLRRQLANPRFGEY---HLFFSNMLKDTQIHILADSDXXXXXXXXXXFYADFVAVEPYH 137
+ L NP +Y H+FF+ + L S F+ E
Sbjct: 82 KCLXADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQI 141
Query: 138 FTLNIPSNHLYMLPAVVDPSSLQHFC---DRVVDGIAAVFLALKRRPVIRYQRTSDIAKR 194
F+L+ P +PS Q +R + IA + L P +RY+ D
Sbjct: 142 FSLDSPD----TFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENAS 197
Query: 195 IAQETTKLM--YQQESGLFDFRRTEISPXXXXXXXXXXPVTPLLNQWTYQAMVHELIGIQ 252
AQ + + Y+ + + P++PLL++ T+QA ++L+ I+
Sbjct: 198 FAQLVQQKLDAYRADDPTXGEGPQKDRSQLLILDRGFDPISPLLHELTFQAXAYDLLPIE 257
Query: 253 DNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQS 312
++ + G ++EV+L E+D + +++ + N+ + + +F + +
Sbjct: 258 NDVYKYVNTGGNEVPEKEVLL-DEKDDLWVEXRHQHIAVVSQNVTKKLKQFADEKRXGTA 316
Query: 313 IQT--IEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGG 370
I+D+++ ++ P+Y+K S H+ L + K ++ L + EQ+LA G
Sbjct: 317 ADKAGIKDLSQXLKKXPQYQKELSKYSTHLHLAEDCXKQYQQHVDKLC-KVEQDLA--XG 373
Query: 371 QGAAFEAVTN-------LLNNENVSDIDRLRLVMLYAL 401
A E + + +L ++ +S D++R+++LY +
Sbjct: 374 TDADGEKIRDHXRNIVPILLDQKISAYDKIRIILLYII 411
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/396 (21%), Positives = 185/396 (46%), Gaps = 35/396 (8%)
Query: 22 KVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQ 81
K+++LD T +S ++LL++ + ++E +IYK++E + +KA+YF+ P+ +++
Sbjct: 33 KIMLLDEFTTKLLSSCCKMTDLLEEGITVIE---NIYKNREPVRQMKALYFISPTPKSVD 89
Query: 82 HLRRQLANPRFGEY---HLFFSNMLKDTQIHILADSDXXXXXXXXXXFYADFVAVEPYHF 138
R + +Y +++F++ D+ + + S F+ E +
Sbjct: 90 CFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKAS-CSKSIRRCKEINISFIPQESQVY 148
Query: 139 TLNIPSNHLYML-PAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQ-RTSDIAKRIA 196
TL++P Y P + S + + + + I V L P +RY+ + D A ++A
Sbjct: 149 TLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLA 208
Query: 197 QETTKLM---YQ-QESGLFDFRRTEISPXXXXXXXXXXPVTPLLNQWTYQAMVHELIGIQ 252
Q K + Y+ E GL + + PV+ +L++ T+QAM ++L+ I+
Sbjct: 209 QLVEKKLEDYYKIDEKGLI---KGKTQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIE 265
Query: 253 DNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQS 312
++ ++ G ++E VL + D + + + + + I +++ E K+ +
Sbjct: 266 NDTYKYKTDG----KEKEAVLEEDDDLWVRVR-HRHIAVVLEEIPKLMKEISSTKKATEG 320
Query: 313 IQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLML--VSETEQELACNGG 370
++ + + ++ P ++K +SK V + + + KL + + +TEQ+LA G
Sbjct: 321 KTSLSALTQLMKKMPHFRK---QISKQVVHLNLAEDCMNKFKLNIEKLCKTEQDLAL--G 375
Query: 371 QGAAFEAVTN-------LLNNENVSDIDRLRLVMLY 399
A + V + +L N+N + D++R V+LY
Sbjct: 376 TDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLY 411
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 175/394 (44%), Gaps = 27/394 (6%)
Query: 22 KVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQ 81
KVL++D ++ +S ++++ + + +VE I K +E + L+AVY + PS +++
Sbjct: 41 KVLVVDQLSMRMLSSCCKMTDIMTEGITIVE---DINKRREPLPSLEAVYLITPSEKSVH 97
Query: 82 HLRRQLANPRFGEY---HLFFSNMLKDTQIHILADSDXXXXXXXXXXFYADFVAVEPYHF 138
L +P +Y H+FF++ D + L S F+ E +
Sbjct: 98 SLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVY 157
Query: 139 TLNIPSNHLYMLPAVVDPSSLQ---HFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRI 195
+L+ + + P Q +R+ + IA + LK P +RY+ +
Sbjct: 158 SLDSADS----FQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALL 213
Query: 196 AQETTKLM--YQQESGLFDFRRTEISPXXXXXXXXXXPVTPLLNQWTYQAMVHELIGIQD 253
AQ + Y+ + + P +P+L++ T+QAM ++L+ I++
Sbjct: 214 AQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIEN 273
Query: 254 NKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSI 313
+ + G +EV+L E D + A +++ ++ + R + +F + N
Sbjct: 274 DVYKYETSGIGEARVKEVLL-DEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGE 332
Query: 314 Q-TIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEER--KLMLVSETEQELACN-G 369
+ T+ D+++ ++ P+Y+K S H+ L + K + KL V EQ+LA
Sbjct: 333 KTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLCRV---EQDLAMGTD 389
Query: 370 GQGAAFE----AVTNLLNNENVSDIDRLRLVMLY 399
+G + A+ +L + NVS D++R+++LY
Sbjct: 390 AEGEKIKDPMRAIVPILLDANVSTYDKIRIILLY 423
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 175/394 (44%), Gaps = 27/394 (6%)
Query: 22 KVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQ 81
KVL++D ++ +S ++++ + + +VE I K +E + L+AVY + PS +++
Sbjct: 29 KVLVVDQLSMRMLSSCCKMTDIMTEGITIVE---DINKRREPLPSLEAVYLITPSEKSVH 85
Query: 82 HLRRQLANPRFGEY---HLFFSNMLKDTQIHILADSDXXXXXXXXXXFYADFVAVEPYHF 138
L +P +Y H+FF++ D + L S F+ E +
Sbjct: 86 SLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVY 145
Query: 139 TLNIPSNHLYMLPAVVDPSSLQ---HFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRI 195
+L+ + + P Q +R+ + IA + LK P +RY+ +
Sbjct: 146 SLDSADS----FQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALL 201
Query: 196 AQETTKLM--YQQESGLFDFRRTEISPXXXXXXXXXXPVTPLLNQWTYQAMVHELIGIQD 253
AQ + Y+ + + P +P+L++ T+QAM ++L+ I++
Sbjct: 202 AQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIEN 261
Query: 254 NKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQSI 313
+ + G +EV+L E D + A +++ ++ + R + +F + N
Sbjct: 262 DVYKYETSGIGEARVKEVLL-DEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGE 320
Query: 314 Q-TIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEER--KLMLVSETEQELACN-G 369
+ T+ D+++ ++ P+Y+K S H+ L + K + KL V EQ+LA
Sbjct: 321 KTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLCRV---EQDLAMGTD 377
Query: 370 GQGAAFE----AVTNLLNNENVSDIDRLRLVMLY 399
+G + A+ +L + NVS D++R+++LY
Sbjct: 378 AEGEKIKDPMRAIVPILLDANVSTYDKIRIILLY 411
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 21 MKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENI 80
KVLILD ++ + +S V ++LL+ + + L I + + + + A+YF+ P+ ENI
Sbjct: 58 WKVLILDIKSTATISSVLRVNDLLKAGITVHSL---IKQDRSPLPDVPAIYFVSPTKENI 114
Query: 81 QHLRRQLANPRFGEYHLFFS-----NMLKD--TQIHILADSDXXXXXXXXXXFYADFVAV 133
+ L + ++ E+++ F+ N+L+D Q+ I SD Y DF+
Sbjct: 115 DIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQ---YLDFIVT 171
Query: 134 EPYHFTLNIPSNHLYMLPAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQR 187
EP F+L I + +L + + C + DG+ L + P+IR +
Sbjct: 172 EPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAK 225
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 22 KVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSSENIQ 81
KVLI D +S + S EL + L L+ S ++ + + AVYF+ P+ ENI
Sbjct: 51 KVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHS---DRDPIRDVPAVYFVMPTEENID 107
Query: 82 HLRRQLANPRFGEYHLFFSNMLKDTQI 108
L + L N + Y+L F + + +++
Sbjct: 108 RLCQDLRNQLYESYYLNFISAISRSKL 134
>pdb|3G6B|A Chain A, Crystal Structure Of A Soluble Chemoreceptor From
Thermotoga Maritima Asn217ile Mutant
pdb|3G6B|B Chain B, Crystal Structure Of A Soluble Chemoreceptor From
Thermotoga Maritima Asn217ile Mutant
Length = 213
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 287 ENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVEN-YPEYKKMHGNVSKHVTLVTE 345
E F ++ + +V +FQ AKS+Q + I+DM + EN E KK NV + V V E
Sbjct: 7 ERFVNLNRLFQELVGDFQ--AKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKE 64
Query: 346 MSKMVEE 352
S + E
Sbjct: 65 ASSQIGE 71
>pdb|3G67|A Chain A, Crystal Structure Of A Soluble Chemoreceptor From
Thermotoga Maritima
pdb|3G67|B Chain B, Crystal Structure Of A Soluble Chemoreceptor From
Thermotoga Maritima
Length = 213
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 285 MYENFGDIGMNIKRMVDEFQQVAKSNQSIQTIEDMARFVEN-YPEYKKMHGNVSKHVTLV 343
+ E F ++ + +V +FQ AKS+Q + I+DM + EN E KK NV + V V
Sbjct: 5 VKERFVNLNRLFQELVGDFQ--AKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERV 62
Query: 344 TEMSKMVEE 352
E S + E
Sbjct: 63 KEASSQIGE 71
>pdb|3IZ6|P Chain P, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 161
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 298 RMVDEFQQVAKSNQSIQTIEDMARFVENYPEYKKMHGNVSKHVT 341
R++ AK N++I + FV+ Y Y+K H N+ HV+
Sbjct: 70 RIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVS 113
>pdb|3PKV|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla)
pdb|3PKW|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii)
pdb|3PKX|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii) And Toxoflavin
Length = 252
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 98 FFSNMLKDTQIHILADSDXXXXXXXXXXFYADFVAVEP-YHFTLNIPSNHL 147
F++NML +H AD+ F A +P YH +NI +NH
Sbjct: 43 FYTNMLGAQHVHEQADAFTIQLGVSQIQFRAAADGTKPFYHIAINIAANHF 93
>pdb|1EW3|A Chain A, Crystal Structure Of The Major Horse Allergen Equ C 1
Length = 159
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 387 VSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDL 446
+S+ + ++LY + ++KD P QL + + + S + K V+ + K+ V + DL
Sbjct: 89 ISEFENDEHIILYLVNFDKDRPFQLFEFYAREPDVSPEIKEEFVKIVQKRGIVKENIIDL 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,132,283
Number of Sequences: 62578
Number of extensions: 407743
Number of successful extensions: 1105
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 22
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)