Query 042034
Match_columns 449
No_of_seqs 151 out of 940
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 23:03:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_A UNC18; exocytosis, exoc 100.0 5.4E-85 1.8E-89 698.0 43.0 427 1-441 2-451 (650)
2 1epu_A S-SEC1; parallel beta-s 100.0 2.9E-85 9.9E-90 695.2 32.3 428 1-441 1-449 (591)
3 1dn1_A NSEC1, syntaxin binding 100.0 2E-84 6.9E-89 683.9 36.9 430 1-439 4-449 (594)
4 3c98_A Syntaxin-binding protei 100.0 5E-82 1.7E-86 671.8 38.7 432 1-443 16-465 (606)
5 3puk_A Syntaxin-binding protei 100.0 5E-83 1.7E-87 673.1 30.2 425 1-439 8-448 (592)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 4.2E-80 1.5E-84 661.8 36.0 426 1-437 17-502 (671)
7 1y9j_A SEC1 family domain cont 100.0 5.7E-29 2E-33 215.4 10.1 126 1-129 20-159 (159)
8 3he4_B Synzip5; heterodimeric 65.1 16 0.00056 22.5 4.9 33 313-345 2-34 (46)
9 3ph0_C ASCG; type III secretio 16.1 2.6E+02 0.009 19.0 4.6 40 366-406 16-55 (61)
10 4dhx_B Enhancer of yellow 2 tr 14.3 2.3E+02 0.0077 21.7 4.5 59 359-419 14-72 (101)
No 1
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=5.4e-85 Score=697.96 Aligned_cols=427 Identities=23% Similarity=0.325 Sum_probs=382.3
Q ss_pred CCHHHHHHHHHH-HHhccC---CCcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCC
Q 042034 1 MVLVTAARDYIN-RMLQDI---SGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPS 76 (449)
Q Consensus 1 m~l~~~~~~~l~-~~L~~~---~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~ 76 (449)
|+|++++|++|+ ++| ++ +||||||+|+.+.++||+++++++|+++||++++.|++ .|+|+++.+|||||+|+
T Consensus 2 ~~l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~---~r~~~~~~~aIyfv~Pt 77 (650)
T 2xhe_A 2 MSLKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSK---QRKVLPQFHGVYFIEPT 77 (650)
T ss_dssp CCHHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTT---CCSCBTTSEEEEEECSC
T ss_pred ccHHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccC---CCCCCCCCCEEEEEcCC
Confidence 899999999999 999 87 79999999999999999999999999999999999997 89999999999999999
Q ss_pred HHHHHHHHHHhcC--CCCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCCCCC
Q 042034 77 SENIQHLRRQLAN--PRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVV 154 (449)
Q Consensus 77 ~~~i~~i~~d~~~--~~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~~~~ 154 (449)
.+||++|++|+++ ++|++|||+|+|.+++.+++.|+++++.+.|.++.|+++||+|+|+|+|||++|++|...+...+
T Consensus 78 ~~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~ 157 (650)
T 2xhe_A 78 EENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS 157 (650)
T ss_dssp HHHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHSGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred HHHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhcchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence 9999999999999 89999999999999999999999999999998999999999999999999999998644321233
Q ss_pred CcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCc-hHHHHHHHHHHHHHHhhhccCCC-CCCCCCCCeEEEecCCCCCc
Q 042034 155 DPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTS-DIAKRIAQETTKLMYQQESGLFD-FRRTEISPLLLILDRRDDPV 232 (449)
Q Consensus 155 ~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~-~~a~~va~~l~~~l~~~~~~~~~-~~~~~~~~~liIlDR~~Dlv 232 (449)
+ ...++++|++|+++|.++|.+|.|||+|++ ..|++||+++++++.+.....+. +.+...+++|||+||++|++
T Consensus 158 ~----~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D~v 233 (650)
T 2xhe_A 158 S----SYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLK 233 (650)
T ss_dssp G----GCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTTTSCCCCCCSSCCEEEEECGGGCSS
T ss_pred c----hHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccCCcccCCCCCCCCEEEEEcCCcchh
Confidence 3 456899999999999999999999999986 68999999998888541122221 22345688999999999999
Q ss_pred ccccchhhhHHHHhhhcCccCCeEEEeccCC-CCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Q 042034 233 TPLLNQWTYQAMVHELIGIQDNKVDLRSIGD-FPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQ 311 (449)
Q Consensus 233 TPLl~~~TYe~Lidel~~I~~~~v~~~~~~~-~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~~ 311 (449)
|||+||||||||+||+|||++|.|+++...+ +..+.+++.| +++|++|+++||+||++|++.|++.++++++.++...
T Consensus 234 TPLlhq~TYqaLi~dll~I~~n~v~~~~~~~~~~~~~k~~~L-~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~ 312 (650)
T 2xhe_A 234 SPLVHELTYQAAAYDLLNIENDIYSYSTVDAGGREQQRQVVL-GEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQ 312 (650)
T ss_dssp TTTSCCCBHHHHHHHHSCCBTTEEEEEECCSSCCSEEEEEEC-CTTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccchHHHHHHHHhcCcCCEEEEEecCCCCCccceEEeC-CCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999987643 2345678999 5899999999999999999999999999999876544
Q ss_pred -------CCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCc-----chhHHHHH
Q 042034 312 -------SIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQ-----GAAFEAVT 379 (449)
Q Consensus 312 -------~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~-----~~~~~~i~ 379 (449)
+..|++||++||++||+++++++++++|++||++|++.+++ +|.+++++||++++|.|. +..+++|+
T Consensus 313 ~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~ 391 (650)
T 2xhe_A 313 GLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVA 391 (650)
T ss_dssp TCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSCCBCCCHHHHHH
T ss_pred cccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 45699999999999999999999999999999999999999 999999999999999875 34589999
Q ss_pred HHHhCCCCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCC--CchHHHHHHHHhcCCCC
Q 042034 380 NLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAK--YKPGLVQFLLKQAGVDK 441 (449)
Q Consensus 380 ~li~~~~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~~ 441 (449)
++|.++..+..++|||+|||+++++|++++++++ +++++|. +++.++.||.++|+...
T Consensus 392 ~ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~----ll~~~G~~~~~~~~i~nL~~lgl~~~ 451 (650)
T 2xhe_A 392 SVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELNN----LLDNANIATPSRSAIYNLEMLGATVV 451 (650)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHHH----HHHHTTCCGGGGHHHHGGGGGTCCCB
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHcCCCHHHHHHHHHHHHhCCccc
Confidence 9998777999999999999999999999877753 5677776 99999999999987653
No 2
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=2.9e-85 Score=695.19 Aligned_cols=428 Identities=22% Similarity=0.353 Sum_probs=370.3
Q ss_pred CCHHHHHHHHHH-HHhcc---CCCcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCC
Q 042034 1 MVLVTAARDYIN-RMLQD---ISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPS 76 (449)
Q Consensus 1 m~l~~~~~~~l~-~~L~~---~~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~ 76 (449)
|+|++++|+.+. ++++. .+||||||+|+.+.++||+++++++|+++||++++.|++ +|+|+++.+|||||+|+
T Consensus 1 ~~l~~~~~~~~~~~i~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~---~r~~~~~~~aIy~v~Pt 77 (591)
T 1epu_A 1 MALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINR---RREPLPLLEAVYLITPT 77 (591)
T ss_dssp -CHHHHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSS---CCCCEEEEEEEEEECCC
T ss_pred CChHHHHHHHHHHHHHHhhccCCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeeccc---CCCCCCCCCeEEEecCC
Confidence 899999999876 66654 369999999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHHHHHHHhcC---CCCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCCC-
Q 042034 77 SENIQHLRRQLAN---PRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPA- 152 (449)
Q Consensus 77 ~~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~~- 152 (449)
.+||++|++|+++ ++|++|||+|+|.++..+++.|+++++.+.|.++.|+++||+|+|+|+|||++|++|...+..
T Consensus 78 ~~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~ 157 (591)
T 1epu_A 78 EESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPS 157 (591)
T ss_dssp HHHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHSTTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGG
T ss_pred HHHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhCchHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCc
Confidence 9999999999997 899999999999999999999999999999989999999999999999999999876433211
Q ss_pred --CCCcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhh--ccCCCCCCCCCCCeEEEecCC
Q 042034 153 --VVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQE--SGLFDFRRTEISPLLLILDRR 228 (449)
Q Consensus 153 --~~~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~--~~~~~~~~~~~~~~liIlDR~ 228 (449)
.++ ...++++|++|+++|.++|.+|.|||+|+++.|++||+.+++++.+.. .+.+...+...+++|||+||+
T Consensus 158 ~~~~~----~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~ 233 (591)
T 1epu_A 158 RAQGG----IPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRG 233 (591)
T ss_dssp GSTTC----HHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGG
T ss_pred chhhh----hHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEECCC
Confidence 233 578999999999999999999999999987789999999988886432 233322234568899999999
Q ss_pred CCCcccccchhhhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Q 042034 229 DDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAK 308 (449)
Q Consensus 229 ~DlvTPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~ 308 (449)
+|++|||+||||||||+||+|||++|.|+++..+++..+.+++.| +++|++|+++||+||++|++.|++.++++++.++
T Consensus 234 ~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~~~~~~~~k~~~L-~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~ 312 (591)
T 1epu_A 234 FDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLL-DEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKR 312 (591)
T ss_dssp GCSSGGGSCCCBHHHHHHHHSCCBTTEECC-----------CEEC-CGGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC
T ss_pred ccchhhhhhhhhHHHHHHHHhCcCCCEEEEEecCCCCccceEEeC-CCCChHHHHHhccCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999875444445678999 6899999999999999999999999999999875
Q ss_pred hcc--CCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCcc-----hhHHHHHHH
Q 042034 309 SNQ--SIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQG-----AAFEAVTNL 381 (449)
Q Consensus 309 ~~~--~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~-----~~~~~i~~l 381 (449)
..+ +..|++||++||++||+++++++.+++|++||++|++.+++ +|.+++++||++++|.+.+ ..+++|+++
T Consensus 313 ~~~~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~i~~~ 391 (591)
T 1epu_A 313 MGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPI 391 (591)
T ss_dssp --------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccccchHHHHHHHH
Confidence 443 45789999999999999999999999999999999999999 9999999999999998753 467899998
Q ss_pred HhCCCCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCC--CchHHHHHHHHhcCCCC
Q 042034 382 LNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAK--YKPGLVQFLLKQAGVDK 441 (449)
Q Consensus 382 i~~~~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~~ 441 (449)
|.++..+..++|||+|||+++++|++++++++ +++++|. +++.++.||.++|+...
T Consensus 392 l~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~----ll~~~g~~~~~~~~i~~l~~~g~~~~ 449 (591)
T 1epu_A 392 LLDQKISAYDKIRIILLYIIHKGGISEENLAK----LVQHAHIPAEEKWIINDMQNLGVPII 449 (591)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHHTCBCHHHHHH----HHHHTTCCHHHHHHHHHGGGGTCCCB
T ss_pred HhCCCCCHHHHHHHHHHHHHHcCCCCHHHHHH----HHHhcCCCHHHHHHHHHHHHcCCccc
Confidence 87777999999999999999999999877763 5677777 79999999999997643
No 3
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=2e-84 Score=683.91 Aligned_cols=430 Identities=20% Similarity=0.351 Sum_probs=375.6
Q ss_pred CCHHHHHHHHHHH-HhccC---CCcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCC
Q 042034 1 MVLVTAARDYINR-MLQDI---SGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPS 76 (449)
Q Consensus 1 m~l~~~~~~~l~~-~L~~~---~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~ 76 (449)
|.|++++|++|.+ +|+++ ++|||||+|+.+.++||+++++++|+++||++++.|+. +|+|+++++|||||+||
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~---~R~~~~~~~aIYfv~Pt 80 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK---RREPLPSLEAVYLITPS 80 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTS---CCCCCTTSEEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEeccc---ccCCCCCCceEEEEeCC
Confidence 8999999999988 68875 68999999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHHHHHHHhcC---CCCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCCCC
Q 042034 77 SENIQHLRRQLAN---PRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAV 153 (449)
Q Consensus 77 ~~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~~~ 153 (449)
.+||++|++|+++ ++|++|||+|+|.++..+++.|+++++.+.|+++.|+++||+|+|+|+|||++|++|...+...
T Consensus 81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~ 160 (594)
T 1dn1_A 81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPH 160 (594)
T ss_dssp HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGG
T ss_pred HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHhcchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCc
Confidence 9999999999996 6999999999999999999999999999999999999999999999999999999864332110
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhhccCCCCC--CCCCCCeEEEecCCCCC
Q 042034 154 VDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDFR--RTEISPLLLILDRRDDP 231 (449)
Q Consensus 154 ~~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~~~~~~~~--~~~~~~~liIlDR~~Dl 231 (449)
.+ +.....++++|++|+++|.++|.+|.|||+|++..|+++|++++++|.+......+++ ++..++.|||+||++|+
T Consensus 161 ~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~ 239 (594)
T 1dn1_A 161 KA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDP 239 (594)
T ss_dssp GT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCS
T ss_pred cc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCccc
Confidence 00 1125789999999999999999999999999887799999999888854332211221 23457899999999999
Q ss_pred cccccchhhhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc-
Q 042034 232 VTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSN- 310 (449)
Q Consensus 232 vTPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~- 310 (449)
+|||+||||||||+||+|||++|.|+++..+..+.+.+++.| +++|++|.++||+||++|++.|++.++++++.++..
T Consensus 240 vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~L-~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~ 318 (594)
T 1dn1_A 240 SSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLL-DEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNT 318 (594)
T ss_dssp STTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEEC-STTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cccccccccHHHHHHHHhcccCCEEEecCCCCCCccceEEec-CCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999875433334678999 679999999999999999999999999999987554
Q ss_pred cCCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCcc-----hhHHHHHHHHhCC
Q 042034 311 QSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQG-----AAFEAVTNLLNNE 385 (449)
Q Consensus 311 ~~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~-----~~~~~i~~li~~~ 385 (449)
.+..|++||++||++||+++++++.+++|++||++|++.+++ .|.+++++||++++|.+.+ ..++.|+++|.++
T Consensus 319 ~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~~~ 397 (594)
T 1dn1_A 319 GEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDA 397 (594)
T ss_dssp -----CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHHCT
T ss_pred cccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHhCC
Confidence 356789999999999999999999999999999999999987 8999999999999998643 3689999999877
Q ss_pred CCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhh-cCCCchHHHHHHHHhcCC
Q 042034 386 NVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASR-SAKYKPGLVQFLLKQAGV 439 (449)
Q Consensus 386 ~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~ 439 (449)
+.+..|+|||+|||+++++|+++++++++.+ +. +|.+++.++.||.++|+.
T Consensus 398 ~~~~~dkLRL~~Ly~l~~~g~~~~~~~~L~~---~~~~~~~~~~~i~nl~~lG~~ 449 (594)
T 1dn1_A 398 NVSTYDKIRIILLYIFLKNGITEENLNKLIQ---HAQIPPEDSEIITNMAHLGVP 449 (594)
T ss_dssp TSCHHHHHHHHHHHHHHTTCBCHHHHHHHHH---HHTCCHHHHHHHHHGGGGTCC
T ss_pred CCChHhHHHHHHHHHHHcCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhCCc
Confidence 7999999999999999999999887776543 44 889999999999999964
No 4
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=5e-82 Score=671.81 Aligned_cols=432 Identities=21% Similarity=0.360 Sum_probs=376.4
Q ss_pred CCHHHHHHHHHH-HHhccCC---CcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCC
Q 042034 1 MVLVTAARDYIN-RMLQDIS---GMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPS 76 (449)
Q Consensus 1 m~l~~~~~~~l~-~~L~~~~---~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~ 76 (449)
|.|+++++++++ ++++++. +|||||+|+.+.++||+++++++|+++||++++.|++ +|+|+++++|||||+||
T Consensus 16 ~~l~~~~~~~~l~~~i~~v~~~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~---~R~~~~~~~aIyfv~Pt 92 (606)
T 3c98_A 16 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK---RREPLPSLEAVYLITPS 92 (606)
T ss_dssp CCHHHHHHHHHHHHTHHHHCBTTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTS---CCCCBTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccC---CCCCCCCCCEEEEEcCC
Confidence 689999998865 6887653 5999999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHHHHHHhcCC---CCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCC--
Q 042034 77 SENIQHLRRQLANP---RFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLP-- 151 (449)
Q Consensus 77 ~~~i~~i~~d~~~~---~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~-- 151 (449)
.+||++|++|+++| +|++|||+|+|.++..+++.|++++..+.|.+|.|+++||+|+|+|+|||++|++|...+.
T Consensus 93 ~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~~~ 172 (606)
T 3c98_A 93 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPH 172 (606)
T ss_dssp HHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHTSGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHCGG
T ss_pred HHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhcCcccccCeEEEEecchhhcCCcEEEecCCchHHHhcCCc
Confidence 99999999999974 7999999999999999999999999999999999999999999999999999998643211
Q ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhh--ccCCCCCCCCCCCeEEEecCC
Q 042034 152 -AVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQE--SGLFDFRRTEISPLLLILDRR 228 (449)
Q Consensus 152 -~~~~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~--~~~~~~~~~~~~~~liIlDR~ 228 (449)
..++ ...++++|++|+++|.++|.+|.|||+|++..|+.+|+++++++.... ...+...++..++.|||+||+
T Consensus 173 ~~~~~----~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~~~~~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~LlIlDR~ 248 (606)
T 3c98_A 173 KAQMK----NPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRG 248 (606)
T ss_dssp GTTSC----HHHHHHHHHHHHHHHHHHTCCCEEEECTTSHHHHHHHHHHHHHHHHHHHHCTTTTCSTTTTSCEEEEEEGG
T ss_pred ccccc----hHHHHHHHHHHHHHHHHcCCCCeEEEecCchHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCceEEEeecc
Confidence 1222 467999999999999999999999999988889999999988774332 222222345668899999999
Q ss_pred CCCcccccchhhhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Q 042034 229 DDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAK 308 (449)
Q Consensus 229 ~DlvTPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~ 308 (449)
+|++|||+||||||||+||+|||++|.|+++..+....+.+++.| +++|++|.++||+||++|++.|++.++++++.++
T Consensus 249 ~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~l-~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~ 327 (606)
T 3c98_A 249 FDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLL-DEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKR 327 (606)
T ss_dssp GCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEESSSSEEEEEEEC-STTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchhcccccHHHHHHHHhCccCCeEEEecCCCCCccceEeec-CCCchhHHHHhccCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999876544445677888 7899999999999999999999999999998865
Q ss_pred hcc-CCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCcc-----hhHHHHHHHH
Q 042034 309 SNQ-SIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQG-----AAFEAVTNLL 382 (449)
Q Consensus 309 ~~~-~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~-----~~~~~i~~li 382 (449)
... +..|++||++||++||+++++++.+++|++||++|++.++ ++|.+++++||++++|.+.+ ...+.++++|
T Consensus 328 ~~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~~d~~~~~~~~~~~~i~~ll 406 (606)
T 3c98_A 328 MNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPIL 406 (606)
T ss_dssp C-------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHSBCTTSCBCSCTHHHHHHHH
T ss_pred hhcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 443 3458999999999999999999999999999999999996 58999999999999987753 3578999999
Q ss_pred hCCCCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCCCchHHHHHHHHhcCCCCCC
Q 042034 383 NNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRT 443 (449)
Q Consensus 383 ~~~~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 443 (449)
.+++.+..|+|||+|||+++++|+++++++++.+.. .++..+..++.|+.++|+...+.
T Consensus 407 ~~~~~~~~dkLRL~lLy~l~~~g~~~~~l~~~~~~~--~~~~~~~~~i~~l~~lg~~~~~~ 465 (606)
T 3c98_A 407 LDANVSTYDKIRIILLYIFLKNGITEENLNKLIQHA--QIPPEDSEIITNMAHLGVPIVTD 465 (606)
T ss_dssp TCTTSCHHHHHHHHHHHHHHTTSBCHHHHHHHHHHH--TCCHHHHHHHHHGGGGTCCCBCC
T ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCccccc
Confidence 888899999999999999999999998877665532 37888999999999999764333
No 5
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=5e-83 Score=673.06 Aligned_cols=425 Identities=19% Similarity=0.346 Sum_probs=368.1
Q ss_pred CCHHHHHHHHHHH-HhccC---CCcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCC
Q 042034 1 MVLVTAARDYINR-MLQDI---SGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPS 76 (449)
Q Consensus 1 m~l~~~~~~~l~~-~L~~~---~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~ 76 (449)
|+|++++|++|.+ +|+++ ++|||||+|+.+.++||+++++++|+++||++++.|+. +|+|+++++|||||+||
T Consensus 8 ~~lk~~~~~~l~~~~l~~v~~~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~---~R~~~~~~~aIYfv~Pt 84 (592)
T 3puk_A 8 RGLKSVVWRKIKTAVFDDCRKEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYK---NREPVRQMKALYFISPT 84 (592)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSS---CCCCBTTSCEEEEECSC
T ss_pred hhHHHHHHHHHHHHHHHhhcccCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccC---ccCCCCCCcEEEEEeCC
Confidence 7899999999987 88877 68999999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHHHHHHHhcCC---CCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCC-C
Q 042034 77 SENIQHLRRQLANP---RFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLP-A 152 (449)
Q Consensus 77 ~~~i~~i~~d~~~~---~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~-~ 152 (449)
.+||++|++|++++ +|++|||+|+|.++..+++.| ++++.+.|+++.|+++||+|+|+|+|||++|++|...+. .
T Consensus 85 ~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~~ 163 (592)
T 3puk_A 85 PKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-KASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPD 163 (592)
T ss_dssp HHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-HHSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSCCS
T ss_pred HHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-HhhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcCCc
Confidence 99999999999975 899999999999999999999 788999999999999999999999999999998643322 1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCch-HHHHHHHHHHHHHHhh-hccCCCCCCCCCCCeEEEecCCCC
Q 042034 153 VVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSD-IAKRIAQETTKLMYQQ-ESGLFDFRRTEISPLLLILDRRDD 230 (449)
Q Consensus 153 ~~~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~-~a~~va~~l~~~l~~~-~~~~~~~~~~~~~~~liIlDR~~D 230 (449)
.++.......++++|++|+++|.++|.+|.|||+|++. .|++||++++++|.+. ......++..+.++.|||+||++|
T Consensus 164 ~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D 243 (592)
T 3puk_A 164 PSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFD 243 (592)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSSHHHHHHHHHHHHHHHSSSSCSSCSCCSCCSEEEEEEEGGGC
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchHHHHHHHHHHHHHHHHHHhccCCCcCCCCCCceEEEecCCcc
Confidence 11112235789999999999999999999999998753 4779999998888642 111112222356889999999999
Q ss_pred CcccccchhhhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc
Q 042034 231 PVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSN 310 (449)
Q Consensus 231 lvTPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~ 310 (449)
++|||+||||||||+||+|||++|.|+++..+ +.+++.| +++|++|.++||+||++|++.|++.++++++.++..
T Consensus 244 ~vtPLlh~~TYqalv~dll~i~~~~v~~~~~g----~~k~~~L-~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~ 318 (592)
T 3puk_A 244 PVSTVLHELTFQAMAYDLLPIENDTYKYKTDG----KEKEAVL-EEDDDLWVRVRHRHIAVVLEEIPKLMKEISSTKKAT 318 (592)
T ss_dssp SSTTTSCCCBHHHHHHHHSCCGGGEEECCSSS----SCCEEEC-STTSSSTTTTTTSBHHHHHTTSCSCSTTTTTCC---
T ss_pred ccccccccccHHHHHHHHhcccCCEEEecCCC----ceeEEec-CCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999998632 4578999 689999999999999999999999999998887665
Q ss_pred cCCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCcc-----hhHHHHHHHHhCC
Q 042034 311 QSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQG-----AAFEAVTNLLNNE 385 (449)
Q Consensus 311 ~~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~-----~~~~~i~~li~~~ 385 (449)
.+..|++||++||++||+++++++.+++|++||++|++.+++ +|.+++++||++++|.+.+ ..++.|+++|.++
T Consensus 319 ~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~~L~~~ 397 (592)
T 3puk_A 319 EGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNK 397 (592)
T ss_dssp ----CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSSSCTTCCSCSCCHHHHTTTTTSC
T ss_pred cCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHhCC
Confidence 566899999999999999999999999999999999999997 8999999999999998743 3578888888877
Q ss_pred CCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCCC-chHHHHHHHHhcCC
Q 042034 386 NVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKY-KPGLVQFLLKQAGV 439 (449)
Q Consensus 386 ~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~~~~-~~~~~~~l~~~~~~ 439 (449)
+.+..|+|||+|||+++++|+++++++++ ++++|.+ +..++.||..+|+.
T Consensus 398 ~~~~~dkLRL~lLy~L~~~g~~~~~~~~L----l~~~g~~~~~~~i~nl~~lg~~ 448 (592)
T 3puk_A 398 NHDNCDKIRAVLLYIFGINGTTEENLDRL----IHNVKIEDDSDMIRNWSHLGVP 448 (592)
T ss_dssp SCCHHHHHHHHHHHHHHSCBCCHHHHHHH----HHHTCCCTTTHHHHGGGGGTCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCHHHHHHH----HHHcCCChHHHHHHHHHHhCCc
Confidence 79999999999999999999998777654 3444443 89999999999865
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=4.2e-80 Score=661.82 Aligned_cols=426 Identities=20% Similarity=0.304 Sum_probs=357.5
Q ss_pred CCHHHHHHHHHHHHhcc---------------------CCCcEEEEEcccchhhhhcccCchhHhhCCeEEEeecccccc
Q 042034 1 MVLVTAARDYINRMLQD---------------------ISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYK 59 (449)
Q Consensus 1 m~l~~~~~~~l~~~L~~---------------------~~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~ 59 (449)
++|++.+++.|.++|.. .++|||||+|+.+.++||+++++++|+++||++++.|++
T Consensus 17 ~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~--- 93 (671)
T 1mqs_A 17 ISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQ--- 93 (671)
T ss_dssp CCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTS---
T ss_pred ccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccC---
Confidence 48999999999999952 357999999999999999999999999999999999997
Q ss_pred ccCcCCCCeEEEEecCCHHHHHHHHHHhcCCCCceEEEEeccCCChHHHHHHhc----CCccccccceeEEecceEecCC
Q 042034 60 SKESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILAD----SDEQEVVQQVQEFYADFVAVEP 135 (449)
Q Consensus 60 ~r~~~~~~~~iy~i~p~~~~i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~L~~----~~~~~~i~~i~e~~ldfipld~ 135 (449)
.|+|+++.+|||||+|+.+||++|++|+++++|++|||+|+|.+++.+++.|++ +++.+.|.+|.|+++||+|+|+
T Consensus 94 ~r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple~ 173 (671)
T 1mqs_A 94 DRSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEP 173 (671)
T ss_dssp CCCCEEEEEEEEEECSCHHHHHHHHHHHHHTCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECST
T ss_pred CCCCCCCceEEEEeCCCHHHHHHHHHHhhhcccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeeccC
Confidence 899999999999999999999999999999999999999999999999999997 7888999899999999999999
Q ss_pred CeeEecCCCCcccCC-CCCCCcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhhc----cC
Q 042034 136 YHFTLNIPSNHLYML-PAVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQES----GL 210 (449)
Q Consensus 136 dlfsl~~~~~~~~~~-~~~~~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~~----~~ 210 (449)
|+|||++|++|...+ +..|+ ......++++|++|+++|.++|.+|.|||..++ .|++||++|.+++++... +.
T Consensus 174 dlfsL~~p~s~~~l~~~~~~d-~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-~a~~va~~L~~~l~~~~~~~~~~l 251 (671)
T 1mqs_A 174 ELFSLEISNAYLTLNDPKTTE-EEITGLCANIADGLFNTVLTINSIPIIRAAKGG-PAEIIAEKLGTKLRDFVINTNSSS 251 (671)
T ss_dssp TEEECCCCSHHHHHHCSSSCT-THHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-HHHHHHHHHHHHHHHHHHTTCC--
T ss_pred CEEEecCchHHHHhcCCCccc-hhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-hHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999864432 22233 233468999999999999999999999987654 799999999887754321 23
Q ss_pred CCCC---CCCCCCeEEEecCCCCCcccccchhhhHHHHhhhcCccCCeEEEeccCCCC---------CCceEEecCCCCc
Q 042034 211 FDFR---RTEISPLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFP---------KDQQEVVLSSEQD 278 (449)
Q Consensus 211 ~~~~---~~~~~~~liIlDR~~DlvTPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~~---------~~~~~~~L~~~~D 278 (449)
+... ++..+++|||+||++|++|||+||||||||+||+|||++|.|+++...++. .+++++.| +++|
T Consensus 252 f~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~L-~~~D 330 (671)
T 1mqs_A 252 TSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDI-EPND 330 (671)
T ss_dssp ----------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECC-CSSC
T ss_pred cccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccccceEEec-CCCC
Confidence 3221 234688999999999999999999999999999999999999998653221 34578999 6699
Q ss_pred hHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc--------------CCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHH
Q 042034 279 TFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQ--------------SIQTIEDMARFVENYPEYKKMHGNVSKHVTLVT 344 (449)
Q Consensus 279 ~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~~--------------~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~ 344 (449)
++|+++||+||++|++.|+++++++++.+++.. +..+++||++||++||+++++++++++|++||+
T Consensus 331 ~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~ 410 (671)
T 1mqs_A 331 FFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFA 410 (671)
T ss_dssp TTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998874311 135699999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCcchhHHHHHHHHhCCC-CChhhHHHHHHHHHHHcC-CCChhHHHHHHHHHHhhc
Q 042034 345 EMSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNEN-VSDIDRLRLVMLYALRYE-KDSPVQLMQLFNKLASRS 422 (449)
Q Consensus 345 ~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~i~~li~~~~-~~~~~~lRLl~L~~l~~~-g~~~~~~~~l~~~l~~~~ 422 (449)
+|++.+++++|.+++++||+++. ....++|+++|.++. .+..++|||+|||+++++ |++++++++++++| +.+
T Consensus 411 ~l~~~i~~~~l~~~~e~EQ~l~~----~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~l~~~l-~~~ 485 (671)
T 1mqs_A 411 ALLSQLESKSLDTFFEVEQDPGS----TKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYF-KEN 485 (671)
T ss_dssp HHHHHHHTTTCHHHHHHTSCCSS----HHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHH-HTT
T ss_pred HHHHHHhHhhHHHHHHHHHHHhc----CchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHc
Confidence 99999999999999999999972 234789999998743 499999999999999999 99999999999998 555
Q ss_pred CC--CchHHHHHHHHhc
Q 042034 423 AK--YKPGLVQFLLKQA 437 (449)
Q Consensus 423 ~~--~~~~~~~~l~~~~ 437 (449)
|. ..+.+++++..++
T Consensus 486 G~~~~~~~~l~~~~~l~ 502 (671)
T 1mqs_A 486 DYDINALKYVYKLREFM 502 (671)
T ss_dssp TCCCTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 54 5666666665553
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.95 E-value=5.7e-29 Score=215.39 Aligned_cols=126 Identities=26% Similarity=0.363 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHhcc----------CCCcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEE
Q 042034 1 MVLVTAARDYINRMLQD----------ISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAV 70 (449)
Q Consensus 1 m~l~~~~~~~l~~~L~~----------~~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~i 70 (449)
++|++.+|++|.++|.. .++|||||+|+.+.++||+++++++|+++||++++.|++ +|+|+++++||
T Consensus 20 ~sLr~~qr~~l~~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~---~R~p~~~~~aI 96 (159)
T 1y9j_A 20 ASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHS---DRDPIRDVPAV 96 (159)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTS---CCCCBTTSCCE
T ss_pred HHHHHHHHHHHHHHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccC---CCCCCCCCCEE
Confidence 38999999999999986 368999999999999999999999999999999999997 89999999999
Q ss_pred EEecCCHHHHHHHHHHhcCCCCceEEEEeccCCChHHHHHHhc----CCccccccceeEEecc
Q 042034 71 YFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILAD----SDEQEVVQQVQEFYAD 129 (449)
Q Consensus 71 y~i~p~~~~i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~L~~----~~~~~~i~~i~e~~ld 129 (449)
|||+||.+|+++|++|+++++|++|||+|+|.+++..++.||+ ++..+.|++|.|+++|
T Consensus 97 Yfv~Pt~enI~~i~~D~~~~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 97 YFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp EEECCCHHHHHHHHHHHHHTCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred EEecCCHHHHHHHHHHhhhcccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 9999999999999999999999999999999999999999998 7888899888887765
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=65.11 E-value=16 Score=22.48 Aligned_cols=33 Identities=12% Similarity=0.361 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHH
Q 042034 313 IQTIEDMARFVENYPEYKKMHGNVSKHVTLVTE 345 (449)
Q Consensus 313 ~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~ 345 (449)
.++++++++++..|.+-..+.+.+.-|+..+..
T Consensus 2 sntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 2 SNTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 367889999999888888888888888876654
No 9
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=16.08 E-value=2.6e+02 Score=18.99 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=29.9
Q ss_pred hhcCCcchhHHHHHHHHhCCCCChhhHHHHHHHHHHHcCCC
Q 042034 366 ACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKD 406 (449)
Q Consensus 366 ~~~~~~~~~~~~i~~li~~~~~~~~~~lRLl~L~~l~~~g~ 406 (449)
.+|....+.-.-|-+.+... ...+++..+|-+.|+.+.|.
T Consensus 16 ~TG~HcH~EA~tIA~~L~~~-~~~eE~v~mIr~~SLmNrG~ 55 (61)
T 3ph0_C 16 GTGHHCHQEAASIADWLAQE-ECMAECVTLIRLSSLMNQGD 55 (61)
T ss_dssp HHTTTCHHHHHHHHHHHHTS-STTHHHHHHHHHHHHHHC--
T ss_pred HccchHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHccch
Confidence 35665444557788888877 67789999999999999875
No 10
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=14.30 E-value=2.3e+02 Score=21.71 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCcchhHHHHHHHHhCCCCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 042034 359 SETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLA 419 (449)
Q Consensus 359 ~~~Eq~i~~~~~~~~~~~~i~~li~~~~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~ 419 (449)
..++|.++..++.+...+.+..-+.. ..+.|.+|-+|--.+...|+..-.++.+...+.
T Consensus 14 a~I~~~LveSGe~erL~~lL~~rL~E--cGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~ 72 (101)
T 4dhx_B 14 AAINQKLIETGERERLKELLRAKLIE--CGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEIT 72 (101)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 45667777655544444555544433 469999999999888877754446776666654
Done!