Query 042034
Match_columns 449
No_of_seqs 151 out of 940
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 23:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042034.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042034hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dn1a_ e.25.1.1 (A:) Neuronal 100.0 1.2E-78 8.6E-83 643.3 36.7 434 1-442 1-449 (589)
2 d1epua_ e.25.1.1 (A:) Neuronal 100.0 4.6E-77 3.4E-81 631.3 32.2 431 2-440 1-447 (590)
3 d1mqsa_ e.25.1.1 (A:) Sly1P pr 100.0 2E-75 1.4E-79 625.7 32.8 427 2-437 4-488 (653)
4 d2jdia1 a.69.1.1 (A:380-510) F 25.1 71 0.0052 23.7 6.1 62 376-437 43-108 (131)
5 d1fx0a1 a.69.1.1 (A:373-501) F 21.1 1.5E+02 0.011 21.7 9.4 84 354-437 14-108 (129)
6 d1rv3a_ c.67.1.4 (A:) Serine h 20.2 2E+02 0.015 26.2 9.4 99 218-324 340-439 (470)
7 d1st6a4 a.24.9.1 (A:372-488) V 19.4 68 0.0049 23.5 4.6 35 162-204 66-100 (117)
8 d1skyb1 a.69.1.1 (B:372-502) F 19.1 79 0.0057 23.5 5.2 62 376-437 43-108 (131)
9 d1st6a3 a.24.9.1 (A:253-371) V 14.6 52 0.0038 24.3 2.9 34 163-204 76-109 (119)
10 d1y74b1 a.194.1.1 (B:83-132) P 14.3 1.3E+02 0.0097 18.2 5.4 31 313-347 18-48 (50)
No 1
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=1.2e-78 Score=643.28 Aligned_cols=434 Identities=20% Similarity=0.346 Sum_probs=377.2
Q ss_pred CCHHHHHHHHHHH-HhccCCC---cEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCC
Q 042034 1 MVLVTAARDYINR-MLQDISG---MKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPS 76 (449)
Q Consensus 1 m~l~~~~~~~l~~-~L~~~~~---~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~ 76 (449)
|.|.+++++++++ ++++++| |||||+|+.+.++||+++++++|+++||++++.|+. +|+|+++.+|||||+|+
T Consensus 1 ~~~~~~~~~~~l~~~~~~v~~~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~---~r~~~~~~~aIy~i~Pt 77 (589)
T d1dn1a_ 1 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK---RREPLPSLEAVYLITPS 77 (589)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTS---CCCCCTTSEEEEEECCC
T ss_pred CChHHHHHHHHHHHHHhccCCCCccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccC---CCCCCCCCCEEEEEcCC
Confidence 7899999999876 8988753 999999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHHHHHHHhcC---CCCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCCCC
Q 042034 77 SENIQHLRRQLAN---PRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAV 153 (449)
Q Consensus 77 ~~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~~~ 153 (449)
.+|+++|++|+++ ++|++|||+|+|+++..+++.|+++++.+.|.+|.|+++||+|+|+|+|||++|++|...+. .
T Consensus 78 ~~ni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~~~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~-~ 156 (589)
T d1dn1a_ 78 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYS-P 156 (589)
T ss_dssp HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHC-G
T ss_pred HHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhcCccccCCeEEEEecceeeCCCCEEEecCCchHHHhcC-C
Confidence 9999999999987 47999999999999999999999999999999999999999999999999999998643321 1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhhccCCCC--CCCCCCCeEEEecCCCCC
Q 042034 154 VDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESGLFDF--RRTEISPLLLILDRRDDP 231 (449)
Q Consensus 154 ~~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~~~~~~~--~~~~~~~~liIlDR~~Dl 231 (449)
.......+.++++|++|+++|.++|.+|.|||+|+++.|+.+|+++++++.+..+....+ ...+.+++|||+||++|+
T Consensus 157 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~Dl 236 (589)
T d1dn1a_ 157 HKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDP 236 (589)
T ss_dssp GGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCS
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHHHHHHHHHhcCcccCCCcccCCceEEEeccCccc
Confidence 111112578999999999999999999999999998889999999988875433222111 234557899999999999
Q ss_pred cccccchhhhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Q 042034 232 VTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQ 311 (449)
Q Consensus 232 vTPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~~ 311 (449)
+|||+||||||||+||+|||++|.|+++.......+.+++.+ +++|++|+++|++||++|+..+.+.++++++.++...
T Consensus 237 iTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~~~~~~k~~~l-~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~ 315 (589)
T d1dn1a_ 237 SSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLL-DEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNT 315 (589)
T ss_dssp STTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEEC-STTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cccccccccHHHHHHHHhcccCCeEEecCCCCCcccceEeec-CCCcHHHHHhhcccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999886544444567777 7899999999999999999999999999998875433
Q ss_pred -CCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCcc-----hhHHHHHHHHhCC
Q 042034 312 -SIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQG-----AAFEAVTNLLNNE 385 (449)
Q Consensus 312 -~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~-----~~~~~i~~li~~~ 385 (449)
+..+++||+++|+++|+++++++.++.|++||++|++.++ ++|.+++++||++++|.+.+ ...+.+++++.++
T Consensus 316 ~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~i~~~l~~~ 394 (589)
T d1dn1a_ 316 GEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDA 394 (589)
T ss_dssp -----CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHHCT
T ss_pred cccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHhcC
Confidence 4468899999999999999999999999999999999996 78999999999999987642 3578899988888
Q ss_pred CCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCCCchHHHHHHHHhcCCCCC
Q 042034 386 NVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKR 442 (449)
Q Consensus 386 ~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 442 (449)
..+.+++|||+|||+++++|+++++++++.+.+ .++.+.+.++.+|.++|....+
T Consensus 395 ~~~~~d~LRL~~l~~l~~~g~~~~~~~~l~~~~--~~~~~~~~~~~~l~~lg~~~~~ 449 (589)
T d1dn1a_ 395 NVSTYDKIRIILLYIFLKNGITEENLNKLIQHA--QIPPEDSEIITNMAHLGVPIVT 449 (589)
T ss_dssp TSCHHHHHHHHHHHHHHTTCBCHHHHHHHHHHH--TCCHHHHHHHHHGGGGTCCCBC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhCCcccc
Confidence 789999999999999999999999998887764 3677889999999999976543
No 2
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]}
Probab=100.00 E-value=4.6e-77 Score=631.34 Aligned_cols=431 Identities=22% Similarity=0.354 Sum_probs=363.8
Q ss_pred CHHHHHHHHHHH-HhccCC---CcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccccCcCCCCeEEEEecCCH
Q 042034 2 VLVTAARDYINR-MLQDIS---GMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKSKESMSHLKAVYFLRPSS 77 (449)
Q Consensus 2 ~l~~~~~~~l~~-~L~~~~---~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~r~~~~~~~~iy~i~p~~ 77 (449)
+|++++|+++++ +|++++ +|||||+|+.+.++||+++++++|+++||++++.|+. +|+|+++.+|||||+|+.
T Consensus 1 ~~~~~~~~~~l~~~~~~v~~~~~wKvLi~D~~t~~ils~~~~~~~L~~~gV~l~~~l~~---~r~~~~~~~aIy~i~Pt~ 77 (590)
T d1epua_ 1 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINR---RREPLPLLEAVYLITPTE 77 (590)
T ss_dssp CHHHHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSS---CCCCEEEEEEEEEECCCH
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccC---CCCCCCCCCEEEEECCCH
Confidence 478899888775 888764 5999999999999999999999999999999999996 899999999999999999
Q ss_pred HHHHHHHHHhcC---CCCceEEEEeccCCChHHHHHHhcCCccccccceeEEecceEecCCCeeEecCCCCcccCCCCCC
Q 042034 78 ENIQHLRRQLAN---PRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVAVEPYHFTLNIPSNHLYMLPAVV 154 (449)
Q Consensus 78 ~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~L~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~~~~~~~ 154 (449)
+|+++|++|++. ++|++|||+|+|+++..+++.|+++++.+.|.+|.|+++||+|+|+|+|||++|++|...+....
T Consensus 78 eni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~l~~la~~~~~~~i~~i~e~~~df~~l~~~lfsl~~~~~~~~~~~~~~ 157 (590)
T d1epua_ 78 ESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSR 157 (590)
T ss_dssp HHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHSTTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGG
T ss_pred HHHHHHHHHhhhhhcccCceEEEEECCCCCHHHHHHHHhccccccCCeEEEEecceEeCCCCEEEecCCcHHHHhcCcch
Confidence 999999999984 68999999999999999999999999999999999999999999999999999998643321111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCeEEEecCCCCCc
Q 042034 155 DPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQESG--LFDFRRTEISPLLLILDRRDDPV 232 (449)
Q Consensus 155 ~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~~~--~~~~~~~~~~~~liIlDR~~Dlv 232 (449)
... ..+.++++|++|+++|.++|.+|.|||+|++..|..+|+++.+++.+.... .+.....+.+++|||+||++|++
T Consensus 158 ~~~-~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~Dli 236 (590)
T d1epua_ 158 AQG-GIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPI 236 (590)
T ss_dssp STT-CHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCSS
T ss_pred hhc-chhHHHHHHHHHHHHHHHcCCCCeEEEeCCchHHHHHHHHHHHHHHHHhhcCccccCCCCCCCceEEEEecccccc
Confidence 111 146789999999999999999999999998878888888887777433222 21112234578999999999999
Q ss_pred ccccchhhhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc--
Q 042034 233 TPLLNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNIKRMVDEFQQVAKSN-- 310 (449)
Q Consensus 233 TPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~-- 310 (449)
|||+||||||||+||+|||++|.|+++...+...+.+++.+ +++|++|+++||+||++|++.+.+.+++++++++..
T Consensus 237 TPLlh~~TYqaLi~e~~~I~~n~v~~~~~~~~~~~~k~~~l-~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~~ 315 (590)
T d1epua_ 237 SPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLL-DEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTA 315 (590)
T ss_dssp GGGSCCCBHHHHHHHHSCCBTTEECC-----------CEEC-CGGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC----
T ss_pred ccccccccHHHHHHHHhcccCCeeEecCCCCCCCcceeeec-CCcchHHHHHhcccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999876554444567788 789999999999999999999999999999876432
Q ss_pred cCCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCcc-----hhHHHHHHHHhCC
Q 042034 311 QSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMSKMVEERKLMLVSETEQELACNGGQG-----AAFEAVTNLLNNE 385 (449)
Q Consensus 311 ~~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~-----~~~~~i~~li~~~ 385 (449)
.+..+++||+++|++||+++++++.++.|+++|++|++.+++ ++.++.++||++++|.+.+ ..+..+.+++.+.
T Consensus 316 ~~~~~~~~l~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~i~~-~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (590)
T d1epua_ 316 ADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQ 394 (590)
T ss_dssp ----CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHHHTCT
T ss_pred ccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCcchhhHhHHHHHHHHHHhCC
Confidence 234588999999999999999999999999999999999975 6999999999999987642 3567777877777
Q ss_pred CCChhhHHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCCCchHHHHHHHHhcCCC
Q 042034 386 NVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVD 440 (449)
Q Consensus 386 ~~~~~~~lRLl~L~~l~~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 440 (449)
..+.+++|||+|||+++++|++.++++++.+. ..++.+...++.+|..+|...
T Consensus 395 ~~~~~d~LRLl~l~~l~~~g~~~~~~~~l~~~--~~~~~~~~~~~~~l~~lg~~~ 447 (590)
T d1epua_ 395 KISAYDKIRIILLYIIHKGGISEENLAKLVQH--AHIPAEEKWIINDMQNLGVPI 447 (590)
T ss_dssp TSCHHHHHHHHHHHHHHHTCBCHHHHHHHHHH--TTCCHHHHHHHHHGGGGTCCC
T ss_pred CCCHHHHHHHHHHHHHhccCCChHHHHHHHHH--cCCCHHHHHHHHHHHHhCCcc
Confidence 79999999999999999999999888877664 348999999999999999654
No 3
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=2e-75 Score=625.74 Aligned_cols=427 Identities=20% Similarity=0.311 Sum_probs=350.0
Q ss_pred CHHHHHHHHHHHHhc---------------------cCCCcEEEEEcccchhhhhcccCchhHhhCCeEEEeeccccccc
Q 042034 2 VLVTAARDYINRMLQ---------------------DISGMKVLILDSQTVSAVSVVYSQSELLQKEVFLVELVDSIYKS 60 (449)
Q Consensus 2 ~l~~~~~~~l~~~L~---------------------~~~~~kvLv~D~~~~~~ls~~~~~~~L~~~gV~~i~~l~~~~~~ 60 (449)
+|.+.+...+.+||. +.+.|||||+|+.+.++||++|++++|+++||++++.|+. +
T Consensus 4 ~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~WKvLv~D~~t~~iis~~~~~~~Ll~~gV~lve~i~~---~ 80 (653)
T d1mqsa_ 4 SLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQ---D 80 (653)
T ss_dssp CHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTS---C
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCccccccccccccCCCcceEEEEeCCchHHHHHhCCHHHHHHCCCEEEEecCC---C
Confidence 688899999999983 2236999999999999999999999999999999999996 8
Q ss_pred cCcCCCCeEEEEecCCHHHHHHHHHHhcCCCCceEEEEeccCCChHHHHHHhc----CCccccccceeEEecceEecCCC
Q 042034 61 KESMSHLKAVYFLRPSSENIQHLRRQLANPRFGEYHLFFSNMLKDTQIHILAD----SDEQEVVQQVQEFYADFVAVEPY 136 (449)
Q Consensus 61 r~~~~~~~~iy~i~p~~~~i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~L~~----~~~~~~i~~i~e~~ldfipld~d 136 (449)
|+|+++.+|||||+||.+||++|++||++|+|++|||+|++.+++.+++.|++ .+..++|.+|.|+++||+|+|+|
T Consensus 81 R~~~~~~~aIyfi~Pt~eni~~l~~d~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~~~~i~~v~e~~ldfiple~~ 160 (653)
T d1mqsa_ 81 RSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPE 160 (653)
T ss_dssp CCCEEEEEEEEEECSCHHHHHHHHHHHHHTCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECSTT
T ss_pred CCCCCCCCEEEEeCCCHHHHHHHHHHhCcCccCeEEEEECCCCCHHHHHHHHhhhhcccccccccEEEEEcccEEECcCC
Confidence 99999999999999999999999999999999999999999999999999986 67889999999999999999999
Q ss_pred eeEecCCCCcccCCC-CCCCcchHHHHHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHHhhh-------c
Q 042034 137 HFTLNIPSNHLYMLP-AVVDPSSLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMYQQE-------S 208 (449)
Q Consensus 137 lfsl~~~~~~~~~~~-~~~~~~~~~~~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~~~~-------~ 208 (449)
+|||++|++|...+. ..++ ....+.++++|++|+++|.++|.+|.|||.+++ .|+.+|+.+.+++.+.. .
T Consensus 161 lFsl~~~~~~~~l~~~~~~~-~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~-~a~~va~~l~~~l~e~~~~~~~~~~ 238 (653)
T d1mqsa_ 161 LFSLEISNAYLTLNDPKTTE-EEITGLCANIADGLFNTVLTINSIPIIRAAKGG-PAEIIAEKLGTKLRDFVINTNSSST 238 (653)
T ss_dssp EEECCCCSHHHHHHCSSSCT-THHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-HHHHHHHHHHHHHHHHHHTTCC---
T ss_pred EEEecCchHHHHhcCCccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-hHHHHHHHHHHHHHHHHHhhhhccc
Confidence 999999998654322 2222 223578999999999999999999999998764 68889988877774321 1
Q ss_pred cCCCCCCCCCCCeEEEecCCCCCcccccchhhhHHHHhhhcCccCCeEEEeccCCC---------CCCceEEecCCCCch
Q 042034 209 GLFDFRRTEISPLLLILDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLRSIGDF---------PKDQQEVVLSSEQDT 279 (449)
Q Consensus 209 ~~~~~~~~~~~~~liIlDR~~DlvTPLl~~~TYe~Lidel~~I~~~~v~~~~~~~~---------~~~~~~~~L~~~~D~ 279 (449)
+.+...+...+++|||+||++|++||||||||||||+||+|||++|.|+++..... ...++.+.| +++|+
T Consensus 239 ~~~~~~~~~~~~~LlIlDR~~DliTPLlhq~TYqaLi~dl~~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~l-~~~D~ 317 (653)
T d1mqsa_ 239 STLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDI-EPNDF 317 (653)
T ss_dssp ---------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECC-CSSCT
T ss_pred ccccCCCCCCCCeEEEEecCcccccccccchhHHHHHHHHHHhcCCeEEeccccccccccccccccccceeccc-CcCcH
Confidence 11111234557899999999999999999999999999999999999999764211 123456777 78999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHhc--------------cCCCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHH
Q 042034 280 FFKANMYENFGDIGMNIKRMVDEFQQVAKSN--------------QSIQTIEDMARFVENYPEYKKMHGNVSKHVTLVTE 345 (449)
Q Consensus 280 i~~~~R~~~f~~v~~~l~~~~~~~~~~~~~~--------------~~~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~ 345 (449)
+|+++||+||++|++.|.+.++++++++++. ....++.+|++||++||++++++++++.|++|+++
T Consensus 318 ~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~v~~lp~~~~~~~~l~~H~~i~~~ 397 (653)
T d1mqsa_ 318 FWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAA 397 (653)
T ss_dssp THHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876421 22357888999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCcchhHHHHHHHHhCCCCChhhHHHHHHHHHHHc-CCCChhHHHHHHHHHHhh-cC
Q 042034 346 MSKMVEERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENVSDIDRLRLVMLYALRY-EKDSPVQLMQLFNKLASR-SA 423 (449)
Q Consensus 346 i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~i~~li~~~~~~~~~~lRLl~L~~l~~-~g~~~~~~~~l~~~l~~~-~~ 423 (449)
|++.+++++|.+++++||++++|.+.+..+..+++ ....+..+++||+|+|++++ +|.+...++.+++.+.+. ++
T Consensus 398 l~~~~~~~~l~~~~~lEq~i~~~~~~~~~l~~i~~---~~~~~~~d~lRll~l~~l~~~~~~~~~~~~~~~~~l~~~~~~ 474 (653)
T d1mqsa_ 398 LLSQLESKSLDTFFEVEQDPGSTKTRSRFLDILKD---GKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYD 474 (653)
T ss_dssp HHHHHHTTTCHHHHHHTSCCSSHHHHHHHHHHTTS---CCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHh---cccCCHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998765544444433 34468899999998888766 567777788888887776 78
Q ss_pred CCchHHHHHHHHhc
Q 042034 424 KYKPGLVQFLLKQA 437 (449)
Q Consensus 424 ~~~~~~~~~l~~~~ 437 (449)
...+..+.++..++
T Consensus 475 ~~~l~~l~~l~~~~ 488 (653)
T d1mqsa_ 475 INALKYVYKLREFM 488 (653)
T ss_dssp CTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 88888888876654
No 4
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.14 E-value=71 Score=23.70 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCCChhhHHHH-HHHHHHHcC---CCChhHHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 042034 376 EAVTNLLNNENVSDIDRLRL-VMLYALRYE---KDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQA 437 (449)
Q Consensus 376 ~~i~~li~~~~~~~~~~lRL-l~L~~l~~~---g~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 437 (449)
..+.|++..+...+..+--. +.||+.++| +++.+++..+...++.++..++-.+++.+..=|
T Consensus 43 ~rl~ElLKQ~q~~Pl~v~eQv~iL~A~~~G~lD~i~v~~I~~fe~~ll~~l~~~~~~~l~~I~~~~ 108 (131)
T d2jdia1 43 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDG 108 (131)
T ss_dssp HHHHHHTCCCSSCCCCHHHHHHHHHHHHTTTTTTSCGGGHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHhCHHHHHHHHHcC
Confidence 67889998776666665554 556777775 567788999999999888777778888776533
No 5
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=21.07 E-value=1.5e+02 Score=21.73 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHhhcCCcch-------hHHHHHHHHhCCCCChhhHHH-HHHHHHHHcC---CCChhHHHHHHHHHHhhc
Q 042034 354 KLMLVSETEQELACNGGQGA-------AFEAVTNLLNNENVSDIDRLR-LVMLYALRYE---KDSPVQLMQLFNKLASRS 422 (449)
Q Consensus 354 ~l~~~~~~Eq~i~~~~~~~~-------~~~~i~~li~~~~~~~~~~lR-Ll~L~~l~~~---g~~~~~~~~l~~~l~~~~ 422 (449)
.+.++-|+|.----|.|-+. .=..+.|++..+...+..+-. .++||+.++| .++.+++..+.+.+...+
T Consensus 14 ~laQy~El~aFaqfgsdlD~~t~~~l~rG~rl~ElLKQ~q~~Pl~v~eQv~iLyA~~~G~LD~ipv~~I~~fe~~ll~~l 93 (129)
T d1fx0a1 14 ELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYV 93 (129)
T ss_dssp HHHHHHHHTTTGGGCSSCCHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHhhhHHHHHHHHHHcccccCCCHHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHH
Confidence 44455555554444555432 126788999877665555554 4667888775 567788999999998887
Q ss_pred CCCchHHHHHHHHhc
Q 042034 423 AKYKPGLVQFLLKQA 437 (449)
Q Consensus 423 ~~~~~~~~~~l~~~~ 437 (449)
..++-.+++.+..=|
T Consensus 94 ~~~~~~il~~I~~~~ 108 (129)
T d1fx0a1 94 KTNKPEFQEIISSTK 108 (129)
T ss_dssp HHTCHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHcC
Confidence 777777777776544
No 6
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=20.16 E-value=2e+02 Score=26.19 Aligned_cols=99 Identities=11% Similarity=0.105 Sum_probs=57.8
Q ss_pred CCCeEEEecCCCCCcccc-cchhhhHHHHhhhcCccCCeEEEeccCCCCCCceEEecCCCCchHHHHhccCcHHHHHHHH
Q 042034 218 ISPLLLILDRRDDPVTPL-LNQWTYQAMVHELIGIQDNKVDLRSIGDFPKDQQEVVLSSEQDTFFKANMYENFGDIGMNI 296 (449)
Q Consensus 218 ~~~~liIlDR~~DlvTPL-l~~~TYe~Lidel~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~i~~~~R~~~f~~v~~~l 296 (449)
...+++++| ++|. ++.-..+.++.+. ||..|+-.+|.... +..+.-+.+ -..=--.+.+.-..|.++++.+
T Consensus 340 TdnHlvlvd-----l~~~g~~g~~ae~~Le~~-gI~~Nkn~iP~D~~-~~~~sGiRi-GT~alTtrG~~e~dm~~iA~~I 411 (470)
T d1rv3a_ 340 SDNHLILVD-----LRSKGTDGGRAEKVLEAC-SIACNKNTCPGDKS-ALRPSGLRL-GTPALTSRGLLEKDFQKVAHFI 411 (470)
T ss_dssp CSSSEEEEE-----GGGGTCCHHHHHHHHHHT-TEECEEECCSSCSC-TTSCCEEEE-ECHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCceEEEe-----ecccCCcHHHHHHHHHHc-CcEECCCcCCCCCC-CCCCCeeEe-cCHHHHhCCCCHHHHHHHHHHH
Confidence 456899998 2333 4566677777766 88888777765421 111223444 1122223345556788889999
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 042034 297 KRMVDEFQQVAKSNQSIQTIEDMARFVE 324 (449)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~s~~e~~~~v~ 324 (449)
.+.++..+....+......+.|.++.+.
T Consensus 412 ~~~l~~~~~~~~~~g~~~~~~ef~~~~~ 439 (470)
T d1rv3a_ 412 HRGIELTVQIQDDTGPRATLKEFKEKLA 439 (470)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHhh
Confidence 8888766555443333345555555444
No 7
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.41 E-value=68 Score=23.51 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHH
Q 042034 162 FCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMY 204 (449)
Q Consensus 162 ~l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~ 204 (449)
.++.+++.|..|.. +.+|++|.|..+|+.+.+++.
T Consensus 66 ei~~lt~qLadLr~--------~GkG~sPeA~~lA~qi~~kL~ 100 (117)
T d1st6a4 66 EISALTAKLSDLRR--------HGKGDSPEARALAKQIATSLQ 100 (117)
T ss_dssp HHHHHHHHHHHHHH--------HSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHHH
Confidence 46777778877765 567888999999999888774
No 8
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=19.14 E-value=79 Score=23.48 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCChhhHH-HHHHHHHHHcC---CCChhHHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 042034 376 EAVTNLLNNENVSDIDRL-RLVMLYALRYE---KDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQA 437 (449)
Q Consensus 376 ~~i~~li~~~~~~~~~~l-RLl~L~~l~~~---g~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 437 (449)
..+.|++..+...+..+- -.++||+.++| +++.+++..+...++.++..++-.+++.+..=|
T Consensus 43 ~rl~ElLKQ~q~sP~~v~eQv~iLyA~~~G~LD~Ipv~~I~~fe~~ll~~l~~~~~~~l~~I~~~~ 108 (131)
T d1skyb1 43 ARTVEVLKQDLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTK 108 (131)
T ss_dssp HHHHHHHCCCTTCCCCHHHHHHHHHHTTTTTTTTSCGGGHHHHHHHHHHHHHHGGGGTHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHhCCccccCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 678899987765555544 45666777775 567788999999998887667767777765544
No 9
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.57 E-value=52 Score=24.26 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCCCceEEeccCchHHHHHHHHHHHHHH
Q 042034 163 CDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRIAQETTKLMY 204 (449)
Q Consensus 163 l~~ia~~L~sl~~~~g~~P~I~~~g~~~~a~~va~~l~~~l~ 204 (449)
++.+++.|..|.. +.+|++|.|..+|+.+.+++.
T Consensus 76 i~~lt~qLadLr~--------~G~G~sPeA~~lA~qi~~kL~ 109 (119)
T d1st6a3 76 LGQMTDQLADLRA--------RGQGATPMAMQKAQQVSQGLD 109 (119)
T ss_dssp HHHHHHHHHHHTT--------TTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHHHH
Confidence 5556666666543 567888999999999988774
No 10
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.28 E-value=1.3e+02 Score=18.25 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHhchhhHHHhhhHHhHHHHHHHHH
Q 042034 313 IQTIEDMARFVENYPEYKKMHGNVSKHVTLVTEMS 347 (449)
Q Consensus 313 ~~s~~e~~~~v~~Lp~~~~~~~~l~~H~~i~~~i~ 347 (449)
..+..|+..+++ =|.++ ..+..|=.+|+++.
T Consensus 18 ~~e~~EL~~lL~-~PH~~---aLL~aHD~VA~k~Y 48 (50)
T d1y74b1 18 NNDAKELKRILT-QPHFM---ALLQTHDVVAHEVY 48 (50)
T ss_dssp CHHHHHHHHHHH-SHHHH---HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHh-CHHHH---HHHHHHHHHHHHhc
Confidence 345666666665 37766 66888888887653
Done!