BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042035
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 21 VDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVM--YAWPTS----- 73
+D+I+K+ + P++ P F E LK+ + VVGY+M W S
Sbjct: 23 IDQIIKINRLTLPENYPYY-FFVEHLKEYGLAFFVAIVDNSVVGYIMPRIEWGFSNIKQL 81
Query: 74 ----LSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPFRTPAVNLYK 128
+ +AV E YR +G LLEA++K + I L V PA+ LY+
Sbjct: 82 PSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYE 141
Query: 129 KFGFQVDALIQGYYSADRPAYRM 151
K F+ +++GYY+ AY M
Sbjct: 142 KLNFKKVKVLKGYYADGEDAYLM 164
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 19 NVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQ-VVGYVMYAWPTSLSAS 77
+ +D+I+ +K + +PL+ + +E K + +++ I GQ + G++ PTSL+A
Sbjct: 22 HALDQIIWTKKNTPAEIQPLSLAAYQEKXKDET--IFVAISGQQLAGFIEVHPPTSLAAH 79
Query: 78 ----ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133
+ + V +++ QG G +LL + +++L V A+ Y+K GF
Sbjct: 80 QKQWLLSIGVSPDFQDQGIGGSLLSYIKDXAEISGIHKLSLRVXATNQEAIRFYEKHGFV 139
Query: 134 VDA------LIQGYYSAD 145
+A I G+Y D
Sbjct: 140 QEAHFKEEFYINGHYCDD 157
>pdb|3LD2|A Chain A, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|B Chain B, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|C Chain C, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|D Chain D, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
Length = 197
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 11/126 (8%)
Query: 21 VDEIVKMEKKIFPKHE---PLARSFDEELKKK---NSGLLYIQIHGQVVGYV----MYAW 70
++++V++E K + + PL + +++ +K N+ L +I ++VG + +Y +
Sbjct: 45 IEQVVELENKTWSEQNTPVPLPVASKDQIIQKFESNTHFLVAKIKDKIVGVLDYSSLYPF 104
Query: 71 PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKF 130
P+ +AV E R +G G AL++ + + ++ ++ +HV AV YKK
Sbjct: 105 PSGQHIVTFGIAVAEKERRKGIGRALVQIFLNEVKS-DYQKVLIHVLSSNQEAVLFYKKL 163
Query: 131 GFQVDA 136
GF ++A
Sbjct: 164 GFDLEA 169
>pdb|2CNM|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNS|A Chain A, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|B Chain B, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|C Chain C, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNT|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|D Chain D, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea
Length = 160
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVD 135
A++ +AV +++ +G G LLE I + TR V+ + L V A+ LY+ GF
Sbjct: 64 ATLFNIAVDPDFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYESLGFNEA 123
Query: 136 ALIQGYY 142
+ + YY
Sbjct: 124 TIRRNYY 130
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 42 FDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAI 101
++E + K N + +H Q++G+++ + A I + V + YR G G+ L+ A
Sbjct: 67 YNEYINKPNQIIYIALLHNQIIGFIVLKKNWNNYAYIEDITVDKKYRTLGVGKRLIAQAK 126
Query: 102 KKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYY-----SADRPAYRMYMDFD 156
+ + I L A Y+K GF + Y ++D A Y+ FD
Sbjct: 127 QWAKEGNXPGIXLETQNNNVAACKFYEKCGFVIGGFDFLVYKGLNXTSDEVAIYWYLHFD 186
Query: 157 S 157
S
Sbjct: 187 S 187
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 78 ITKLAVKENYRGQGHGEALLEAAIKKC-RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136
I L YR G G +L + C + T I LHV A++ Y+KFGF++
Sbjct: 74 IMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIE 133
Query: 137 LIQGYYSADRPA 148
+ YY PA
Sbjct: 134 TKKNYYKRIEPA 145
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 78 ITKLAVKENYRGQGHGEALLEAAIKKC-RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136
I L YR G G L + C + T I LHV A++ Y+KFGF++
Sbjct: 75 IXTLGCLAPYRRLGIGTKXLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIE 134
Query: 137 LIQGYYSADRPA 148
+ YY PA
Sbjct: 135 TKKNYYKRIEPA 146
>pdb|1TIQ|A Chain A, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64.
pdb|1TIQ|B Chain B, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64
Length = 180
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 40 RSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSAS-------ITKLAVKENYRGQGH 92
++EL +S +I ++ GYV + S I ++ +K +++ G
Sbjct: 48 EQLEKELSNXSSQFFFIYFDHEIAGYVKVNIDDAQSEEXGAESLEIERIYIKNSFQKHGL 107
Query: 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADRP 147
G+ LL AI+ R I L V A+ YKK GF V +Y D
Sbjct: 108 GKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKXGF-VQTGAHSFYXGDEE 161
>pdb|1YVK|A Chain A, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|B Chain B, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|C Chain C, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|D Chain D, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237
Length = 163
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134
+ I +AVKE+ + +G G+ L+ AI+K + I + ++LY+K GF++
Sbjct: 63 TVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRI 122
Query: 135 DALIQGY----YSAD--------RPAYRMYMDF 155
A+ + Y D R R+Y+D
Sbjct: 123 QAIDHDFFLRHYDEDIFENGIQCRDXVRLYLDL 155
>pdb|2I79|A Chain A, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|B Chain B, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|C Chain C, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|D Chain D, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|E Chain E, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|F Chain F, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
Length = 172
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 81 LAVKENYRGQGHGEALLEAAIKKCRTRTVLR-ITLHVDPFRTPAVNLYKKFGFQVDALIQ 139
+ + + Y G G LLE AI+ + +LR + L V AV+LY+K GF ++
Sbjct: 92 IVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEG--- 148
Query: 140 GYYSADRPAY 149
S +R AY
Sbjct: 149 ---SQERGAY 155
>pdb|1Y9K|A Chain A, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|B Chain B, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|C Chain C, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|D Chain D, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
Length = 157
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 16 NWTNVVDEIVKMEKKIFPKH-----EPLARSFDEELKKKNSGLLYIQIHG-QVVGYVMYA 69
N +VV E ++ K+ PK +P R +++ GL Y+ G V+G +
Sbjct: 1 NAXSVVIE--RIPKEAIPKSLLLLADPSERQIATYVQR---GLTYVAKQGGSVIGVYVLL 55
Query: 70 WPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKK 129
+ I +AV E+ +G+G G+ LL A++ + ++ + + LY+K
Sbjct: 56 ETRPKTXEIXNIAVAEHLQGKGIGKKLLRHAVETAKGYGXSKLEVGTGNSSVSQLALYQK 115
Query: 130 FGFQVDALIQGYYS 143
GF++ ++ Y+S
Sbjct: 116 CGFRIFSIDFDYFS 129
>pdb|3F8K|A Chain A, Crystal Structure Of Protein Acetyltransferase (Pat) From
Sulfolobus Solfataricus
Length = 160
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 57 QIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHV 116
++ G+VVG S L V NYR G G L++ I++ + + + +
Sbjct: 60 EVDGKVVGEASLHKDGEFS-----LVVHRNYRTLGIGTLLVKTLIEEAKKSGLSTVKFYT 114
Query: 117 DPFRTPAVNLYKKFGFQ 133
P TP + + +K GF+
Sbjct: 115 LPENTPXIKIGRKLGFK 131
>pdb|1UFH|A Chain A, Structure Of Putative Acetyltransferase, Yycn Protein Of
Bacillus Subtilis
pdb|1UFH|B Chain B, Structure Of Putative Acetyltransferase, Yycn Protein Of
Bacillus Subtilis
Length = 180
Score = 32.7 bits (73), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133
A I + E YRG+G+ + L A + R+ + +++LHV A LY++ GFQ
Sbjct: 113 AFIYDFGLYEPYRGKGYAKQALAALDQAARSMGIRKLSLHVFAHNQTARKLYEQTGFQ 170
>pdb|1WWZ|A Chain A, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
pdb|1WWZ|B Chain B, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
Length = 159
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 47 KKKNSGLLYIQIHGQVVGYVMY------AWPTSLSASITKLAVKENYRGQGHGEALLEAA 100
KK + G ++ ++VG+++ + + +I + V + ++G+G G LL
Sbjct: 51 KKASDGFFVAKVGDKIVGFIVCDKDWFSKYEGRIVGAIHEFVVDKKFQGKGIGRKLLITC 110
Query: 101 IKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133
+ + I L V A+NLY+KFGF+
Sbjct: 111 LD-FLGKYNDTIELWVGEKNYGAMNLYEKFGFK 142
>pdb|1ON0|A Chain A, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|B Chain B, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|C Chain C, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|D Chain D, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
Length = 158
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 62 VVGYV-MYAWPT--SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118
+VG++ ++A P A I + E YRG+G+ + L A + R+ + +++LHV
Sbjct: 72 IVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAALDQAARSXGIRKLSLHVFA 131
Query: 119 FRTPAVNLYKKFGFQ 133
A LY++ GFQ
Sbjct: 132 HNQTARKLYEQTGFQ 146
>pdb|2FE7|A Chain A, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
pdb|2FE7|B Chain B, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
Length = 166
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 59 HGQVVGYVM--YAWPTSLSAS---ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRIT 113
G+ +GY + Y++ T L + + L V YRG G G LL ++ R+
Sbjct: 67 EGRPIGYAVFFYSYSTWLGRNGIYLEDLYVTPEYRGVGAGRRLLRELAREAVANDCGRLE 126
Query: 114 LHVDPFRTPAVNLYKKFG 131
V + PA++ Y+ G
Sbjct: 127 WSVLDWNQPAIDFYRSIG 144
>pdb|2P0W|A Chain A, Human Histone Acetyltransferase 1 (Hat1)
pdb|2P0W|B Chain B, Human Histone Acetyltransferase 1 (Hat1)
Length = 324
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 49 KNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIK-KCRTR 107
K+ L+ + G + Y Y +P ++++ + ++GQGHG LLE +
Sbjct: 193 KDGATLFATV-GYMTVYNYYVYPDKTRPRVSQMLILTPFQGQGHGAQLLETVHRYYTEFP 251
Query: 108 TVLRITLHVDP 118
TVL IT DP
Sbjct: 252 TVLDITAE-DP 261
>pdb|2VI7|A Chain A, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|B Chain B, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|C Chain C, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
Length = 177
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 53 LLYIQIH-GQVVGYV-MYAWPT---SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR 107
L+ + +H G V+G + P S S SI + V ++G+G G LL +
Sbjct: 59 LILVALHQGDVIGSASLEQHPRIRRSHSGSIG-MGVAVAWQGKGVGSRLLGELLDIADNW 117
Query: 108 TVLR-ITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSAD 145
LR + L V PA+ LY+KFGF+ + ++ Y D
Sbjct: 118 MNLRRVELTVYTDNAPALALYRKFGFETEGEMRDYAVRD 156
>pdb|3TT2|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase From
Sphaerobacter Thermophilus
Length = 330
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 45 ELKKKNSGLLYIQI-HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKK 103
E K LL ++ G +VG + T+ I + V+ +RG+G ALL+
Sbjct: 216 ERKDPELWLLAVETDSGHIVGTCLGQ-ETAGKGWIGSVGVRRPWRGRGIALALLQEVFGV 274
Query: 104 CRTRTVLRITLHVDP-FRTPAVNLYKKFGFQV 134
R V + L VD RT A LY++ G V
Sbjct: 275 YYRRGVREVELSVDAESRTGAPRLYRRAGXHV 306
>pdb|2JLM|A Chain A, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|B Chain B, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|C Chain C, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|D Chain D, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|E Chain E, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|F Chain F, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
Length = 182
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 60 GQVVGYVMY----AWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLH 115
GQ++G+ + A+P + + ++YRG G + L+ IK+ V +
Sbjct: 71 GQLLGFASWGSFRAFPAYKYTVEHSVYIHKDYRGLGLSKHLMNELIKRAVESEVHVMVGC 130
Query: 116 VDPFRTPAVNLYKKFGFQVDALIQ 139
+D ++ L++K GF IQ
Sbjct: 131 IDATNVASIQLHQKLGFIHSGTIQ 154
>pdb|2R1I|A Chain A, Crystal Structure Of Putative Acetyltransferase
(Yp_831484.1) From Arthrobacter Sp. Fb24 At 1.65 A
Resolution
pdb|2R1I|B Chain B, Crystal Structure Of Putative Acetyltransferase
(Yp_831484.1) From Arthrobacter Sp. Fb24 At 1.65 A
Resolution
Length = 172
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 66 VMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVN 125
V Y P ++ + +L V+ RG G ALL A+ R+R + ++VD T A
Sbjct: 91 VWYPGPVAI---LDELYVRPGRRGHRLGSALLAASCGLVRSRGGALLEINVDGEDTDARR 147
Query: 126 LYKKFGF 132
Y+ GF
Sbjct: 148 FYEARGF 154
>pdb|2BEI|A Chain A, X-Ray Structure Of Thialysine N-Acetyltransferase (Ssat2)
From Homo Sapiens
pdb|2BEI|B Chain B, X-Ray Structure Of Thialysine N-Acetyltransferase (Ssat2)
From Homo Sapiens
pdb|2Q4V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
pdb|2Q4V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
Length = 170
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 3/135 (2%)
Query: 2 GSNGAVTELQRNSTNWTNVVDEIVKMEKKIFPK---HEPLARSFDEELKKKNSGLLYIQI 58
G G + L R + + D++ E+ + P E+ LL +
Sbjct: 12 GDCGDILRLIRELAEFEKLSDQVKISEEALRADGFGDNPFYHCLVAEILPAPGKLLGPCV 71
Query: 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118
G + Y +Y+ + + + V YRGQG G +++ + + + L V
Sbjct: 72 VGYGIYYFIYSTWKGRTIYLEDIYVXPEYRGQGIGSKIIKKVAEVALDKGCSQFRLAVLD 131
Query: 119 FRTPAVNLYKKFGFQ 133
+ A +LYK G Q
Sbjct: 132 WNQRAXDLYKALGAQ 146
>pdb|3D8P|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family
(Np_373092.1) From Staphylococcus Aureus Mu50 At 2.20 A
Resolution
pdb|3D8P|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family
(Np_373092.1) From Staphylococcus Aureus Mu50 At 2.20 A
Resolution
Length = 163
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 7 VTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYV 66
+ +Q+N N +K+++ P E + ++ L L I H +VG +
Sbjct: 21 ILSIQKNEFN--------IKIDRDDQPDLENIEHNY---LNSGGQFWLAINNHQNIVGTI 69
Query: 67 MYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITL-HVDPFRTPAVN 125
+ +++ K V + YR G+ LL+ I C+ + + I L +D F A
Sbjct: 70 GLIRLDNNXSALKKXFVDKGYRNLKIGKKLLDKVIXTCKEQNIDGIYLGTIDKF-ISAQY 128
Query: 126 LYKKFGFQ 133
Y GF+
Sbjct: 129 FYSNNGFR 136
>pdb|2KCW|A Chain A, Solution Structure Of Apo-Form Yjab From Escherichia Coli
Length = 147
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 36 EPLARSFDEELKKKNSGLLYIQIH--GQVVGYVMYAWPTSLSASITKLAVKENYRGQGHG 93
E L RSF E L++ ++ Q VG+++ + + L + + RG G G
Sbjct: 40 EDLVRSFLPEAP------LWVAVNERDQPVGFMLLS-----GQHMDALFIDPDVRGCGVG 88
Query: 94 EALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134
L+E A+ +T +V+ AV YKK GF+V
Sbjct: 89 RVLVEHALSMAP-----ELTTNVNEQNEQAVGFYKKVGFKV 124
>pdb|3OWC|A Chain A, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
pdb|3OWC|B Chain B, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
Length = 188
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRT-VLRITLHVDPFRTPAVNLYKKFGFQVDA 136
+ ++ + + RGQG G LEA + + + R+ L+V + A +LY++ GF+ +
Sbjct: 96 LARIVLAPSARGQGLGLPXLEALLAEAFADADIERVELNVYDWNAAARHLYRRAGFREEG 155
Query: 137 L 137
L
Sbjct: 156 L 156
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 66 VMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRT 106
V+ PT+++ + T L + + +G+ +L+ AAIK+C T
Sbjct: 67 VVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCET 107
>pdb|1U6M|A Chain A, The Crystal Structure Of Acetyltransferase
pdb|1U6M|B Chain B, The Crystal Structure Of Acetyltransferase
pdb|1U6M|C Chain C, The Crystal Structure Of Acetyltransferase
pdb|1U6M|D Chain D, The Crystal Structure Of Acetyltransferase
Length = 199
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTP-AVNLYKKFGFQ 133
+ ++V E +RG G G LL+A + + + L+VD F P A LY GF+
Sbjct: 115 LDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVD-FDNPGARKLYASKGFK 170
>pdb|2GAN|A Chain A, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32.
pdb|2GAN|B Chain B, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32
Length = 190
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 38 LARSFDE--ELKKKNS-----GLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQ 90
L++ FDE +K N L+Y +I + + +V I V ++G+
Sbjct: 62 LSQEFDELYTYQKDNRIIGTIALVYKRIKEKGIWWVPEELXNEKVGLIEFFVVDPEFQGK 121
Query: 91 GHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNL------YKKFGFQ 133
G G LLE A+K+ R +L DP+ NL Y K GF+
Sbjct: 122 GIGSTLLEFAVKRLR-------SLGKDPYVVTFPNLEAYSYYYXKKGFR 163
>pdb|3EY5|A Chain A, Putative Acetyltransferase From Gnat Family From
Bacteroides Thetaiotaomicron
Length = 181
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 63 VGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTP 122
+G++ Y W + A R G+G+ LE + + VL + V+
Sbjct: 62 IGFITY-WDFDEFYYVEHFATNPALRNGGYGKRTLEHLCEFLKRPIVLEVERPVEEXAKR 120
Query: 123 AVNLYKKFGFQVDALIQGYYSADRPAYRMYMDF 155
+N Y++ GF + + YY +P Y+ DF
Sbjct: 121 RINFYQRHGFTL--WEKDYY---QPPYKEGDDF 148
>pdb|1B6B|A Chain A, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
pdb|1B6B|B Chain B, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
Length = 174
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 71 PTSLSASITKLAVKENYRGQGHGEALL-----EAAIKKCRTRTVLRITLHVDPFRTPAVN 125
P SA + LAV ++R QG G LL + R VL + PF
Sbjct: 87 PRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPF------ 140
Query: 126 LYKKFGFQ 133
Y++FGF
Sbjct: 141 -YQRFGFH 147
>pdb|1CJW|A Chain A, Serotonin N-Acetyltransferase Complexed With A Bisubstrate
Analog
Length = 166
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 71 PTSLSASITKLAVKENYRGQGHGEALL-----EAAIKKCRTRTVLRITLHVDPFRTPAVN 125
P SA + LAV ++R QG G LL + R VL + PF
Sbjct: 85 PRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPF------ 138
Query: 126 LYKKFGFQ 133
Y++FGF
Sbjct: 139 -YQRFGFH 145
>pdb|1IB1|E Chain E, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|F Chain F, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|G Chain G, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|H Chain H, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
Length = 200
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 71 PTSLSASITKLAVKENYRGQGHGEALL-----EAAIKKCRTRTVLRITLHVDPFRTPAVN 125
P SA + LAV ++R QG G LL + R VL + PF
Sbjct: 113 PRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPF------ 166
Query: 126 LYKKFGFQ 133
Y++FGF
Sbjct: 167 -YQRFGFH 173
>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
N-Acetyltransferase Catalysis And Inhibition
pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
Length = 207
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 71 PTSLSASITKLAVKENYRGQGHGEALL-----EAAIKKCRTRTVLRITLHVDPFRTPAVN 125
P SA + LAV ++R QG G LL + R VL + PF
Sbjct: 114 PRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPF------ 167
Query: 126 LYKKFGFQ 133
Y++FGF
Sbjct: 168 -YQRFGFH 174
>pdb|2PDO|A Chain A, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|B Chain B, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|C Chain C, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|D Chain D, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|E Chain E, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|F Chain F, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|G Chain G, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|H Chain H, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
Length = 144
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 81 LAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133
L V +RG+G ALL KK R +I ++V + Y++ G++
Sbjct: 75 LGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDXVLGXYERLGYE 127
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133
I + V +YRG G G+AL+ + R++ ++ L P Y+K GF+
Sbjct: 99 IEDVVVDPSYRGAGLGKALIMDLCEISRSKGCYKVILDSSEKSLP---FYEKLGFR 151
>pdb|3S6F|A Chain A, Crystal Structure Of A Hypotetical Acetyltransferase
(Dr_1678) From Deinococcus Radiodurans At 1.19 A
Resolution
Length = 145
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEAL 96
GQV+G+V L+ASI L V+ +R G G L
Sbjct: 57 DGQVIGFVNALSDGILAASIPLLEVQAGWRSLGLGSEL 94
>pdb|3DH3|A Chain A, Crystal Structure Of Rluf In Complex With A 22 Nucleotide
Rna Substrate
pdb|3DH3|B Chain B, Crystal Structure Of Rluf In Complex With A 22 Nucleotide
Rna Substrate
pdb|3DH3|C Chain C, Crystal Structure Of Rluf In Complex With A 22 Nucleotide
Rna Substrate
pdb|3DH3|D Chain D, Crystal Structure Of Rluf In Complex With A 22 Nucleotide
Rna Substrate
Length = 290
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 19 NVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAW---PTSLS 75
N+VD V K++FP + R L K + GL+++ HG +V ++ A
Sbjct: 89 NIVD-FVNHSKRVFP----IGR-----LDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYL 138
Query: 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRT----VLRITLHVDPFRTPAVNLYKKFG 131
++ K +E RG G +L KKC+ + V RITL V + + FG
Sbjct: 139 VTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL-VQGLNRQIRRMCEHFG 197
Query: 132 FQVDAL 137
++V L
Sbjct: 198 YEVKKL 203
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 41 SFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSAS 77
SFDE KK ++ LY I +V ++ WP L S
Sbjct: 289 SFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGS 325
>pdb|3TVE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 137
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GAVTELQRNSTNWTNVVDEI---VKMEKKIFPKHEPLARSFD 43
G V ++RN N T V ++ V +E+ IFP H PL + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVER-IFPLHSPLIQKID 87
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 60 GQVVGYVM--YAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVD 117
G + YV+ + P S I LAV +R QG AL+ + I + D
Sbjct: 89 GALAAYVLPKFEQPRS-EIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQAD 147
Query: 118 PFRTPAVNLYKKFGFQVDAL 137
PAV LY K G + + +
Sbjct: 148 YGDDPAVALYTKLGIREEVM 167
>pdb|3FIN|T Chain T, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 138
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GAVTELQRNSTNWTNVVDEI---VKMEKKIFPKHEPLARSFD 43
G V ++RN N T V ++ V +E+ IFP H PL + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVER-IFPLHSPLIQKID 87
>pdb|3PYO|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s
Ribosome.
pdb|3PYR|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|P Chain P, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|P Chain P, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 137
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GAVTELQRNSTNWTNVVDEI---VKMEKKIFPKHEPLARSFD 43
G V ++RN N T V ++ V +E+ IFP H PL + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVER-IFPLHSPLIQKID 87
>pdb|2J01|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of
4). This File Contains The 50s Subunit From Molecule I.
pdb|2J03|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of
4). This File Contains The 50s Subunit From Molecule
Ii.
pdb|2HGJ|S Chain S, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome Showing How The 16s 3'-End Mimicks Mrna E And
P Codons. This Entry 2hgj Contains 50s Ribosomal
Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb
Entry 2hgi.
pdb|2HGQ|S Chain S, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome With Translocated And Rotated Shine-Dalgarno
Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
2hgp.
pdb|2HGU|S Chain S, 70s T.Th. Ribosome Functional Complex With Mrna And E-
And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|2V47|T Chain T, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|T Chain T, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|2WDI|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|T Chain T, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|2WH4|T Chain T, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|3HUX|T Chain T, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|T Chain T, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|T Chain T, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of
4).
pdb|2WRL|T Chain T, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|T Chain T, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|T Chain T, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|T Chain T, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|T Chain T, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|T Chain T, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|T Chain T, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|T Chain T, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule I
pdb|3KNK|T Chain T, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|T Chain T, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|T Chain T, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|R Chain R, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|R Chain R, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|R Chain R, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule
B. The 30s Subunit Can Be Found In Pdb Entry 3i9b.
Molecule A In The S Asymmetric Unit Is Deposited As
3i9d (30s) And 3i9e (50s)
pdb|3I9E|R Chain R, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule
A. The 30s Subunit Can Be Found In Pdb Entry 3i9d.
Molecule B In The S Asymmetric Unit Is Deposited As
3i9b (30s) And 3i9c (50s)
pdb|2X9S|T Chain T, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|T Chain T, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|T Chain T, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|T Chain T, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|T Chain T, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHK|T Chain T, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHZ|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|T Chain T, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The
70s Ribosome With A Gtp Analog
pdb|2XTG|T Chain T, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|T Chain T, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|T Chain T, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|T Chain T, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|T Chain T, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|T Chain T, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y13|T Chain T, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|T Chain T, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Cognate Codon On The 70s Ribosome.
pdb|2Y17|T Chain T, Ef-Tu Complex 3
pdb|2Y19|T Chain T, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|3ZVP|T Chain T, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release
Factor 3
pdb|3UXQ|T Chain T, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|T Chain T, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UYG|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UZ1|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin
pdb|3UZ2|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin.
pdb|3UZ8|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex
pdb|3UZH|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex.
pdb|3UZK|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex With Paromomycin
pdb|3UZN|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-cognate Trna-tyr Complex With Paromomycin
pdb|4ABS|T Chain T, Complex Of Smpb, A Tmrna Fragment And
Ef-Tu-Gdp-Kirromycin With The 70s Ribosome
pdb|4DHA|T Chain T, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|T Chain T, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|T Chain T, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|T Chain T, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|T Chain T, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|T Chain T, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|T Chain T, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 1st Ribosome In The Asu
pdb|3V2F|T Chain T, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 2nd Ribosome In The Asu
pdb|4G5L|R Chain R, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|R Chain R, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|R Chain R, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|R Chain R, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 146
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GAVTELQRNSTNWTNVVDEI---VKMEKKIFPKHEPLARSFD 43
G V ++RN N T V ++ V +E+ IFP H PL + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVER-IFPLHSPLIQKID 87
>pdb|1VSA|N Chain N, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|N Chain N, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|T Chain T, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|T Chain T, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|T Chain T, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|T Chain T, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|3MRZ|P Chain P, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3ms0. Molecule A In The Same Asymmetric Unit Is
Deposited As 3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|P Chain P, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3mr8. Molecule B In The Same Asymmetric Unit Is
Deposited As 3mrz (50s) And 3ms0 (30s)
Length = 146
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GAVTELQRNSTNWTNVVDEI---VKMEKKIFPKHEPLARSFD 43
G V ++RN N T V ++ V +E+ IFP H PL + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVER-IFPLHSPLIQKID 87
>pdb|2D4O|A Chain A, Crystal Structure Of Ttha1254 (I68m Mutant) From Thermus
Thermophilus Hb8
Length = 141
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138
LL A +K V + LH+DP R K GF + L+
Sbjct: 78 GLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGPLV 121
>pdb|2D4P|A Chain A, Crystal Structure Of Ttha1254 (Wild Type) From Thermus
Thermophilus Hb8
Length = 141
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138
LL A +K V + LH+DP R K GF + L+
Sbjct: 78 GLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGPLV 121
>pdb|3VLD|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLD|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|C Chain C, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 500
Score = 26.6 bits (57), Expect = 7.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 2 GSNGAVTELQ----RNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKN 50
GS GA+ +L+ RNS N++D K E+K+ +EPL R + + + KN
Sbjct: 439 GSAGAIIDLETVHYRNSA-LRNLLD---KGEEKLSVWYEPLLREYSKAVNGKN 487
>pdb|2GML|A Chain A, Crystal Structure Of Catalytic Domain Of E.Coli Rluf
pdb|2GML|B Chain B, Crystal Structure Of Catalytic Domain Of E.Coli Rluf
Length = 237
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 19 NVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAW---PTSLS 75
N+VD V K++FP + R L K + GL+++ HG +V ++ A
Sbjct: 36 NIVD-FVNHSKRVFP----IGR-----LDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYL 85
Query: 76 ASITKLAVKENYRGQGHGEALL 97
++ K +E RG G +L
Sbjct: 86 VTVDKPITEEFIRGXSAGVPIL 107
>pdb|2OC5|A Chain A, Crystal Structure Of A Ferritin-Like Protein (Pmt1231)
From Prochlorococcus Marinus Str. Mit 9313 At 1.68 A
Resolution
Length = 244
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 37 PLARSFDEELKK-KNSGLLYIQIHGQVVGYVMYAWPTSLSAS------ITKLAVKENYRG 89
PL +F L + K L IQ + + + A+ T + S IT+ VK+ Y
Sbjct: 103 PLRDNFQTALGQGKTPTCLLIQAL-LIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTH 161
Query: 90 QGHGEALLEAAIKKCR 105
+GEA L+A ++ CR
Sbjct: 162 LNYGEAWLKANLESCR 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,679,763
Number of Sequences: 62578
Number of extensions: 171725
Number of successful extensions: 461
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 53
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)