Query 042035
Match_columns 158
No_of_seqs 206 out of 1638
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 13:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3139 N-acetyltransferase [G 99.9 1.6E-24 3.4E-29 129.5 16.2 134 20-155 26-164 (165)
2 PRK10146 aminoalkylphosphonic 99.9 1.8E-23 3.9E-28 128.3 13.3 127 4-136 3-137 (144)
3 PRK09491 rimI ribosomal-protei 99.9 1.4E-22 3E-27 124.7 16.4 142 5-155 2-146 (146)
4 TIGR03827 GNAT_ablB putative b 99.9 1.1E-22 2.3E-27 136.3 15.1 146 3-155 114-266 (266)
5 TIGR01575 rimI ribosomal-prote 99.9 2.1E-22 4.5E-27 121.6 13.8 130 20-151 1-131 (131)
6 PRK10140 putative acetyltransf 99.9 1.4E-21 2.9E-26 122.2 17.1 145 1-153 1-160 (162)
7 PTZ00330 acetyltransferase; Pr 99.9 1.2E-21 2.7E-26 120.6 15.3 128 1-137 3-141 (147)
8 PRK03624 putative acetyltransf 99.9 1.3E-21 2.8E-26 119.3 14.6 128 4-138 2-131 (140)
9 COG0456 RimI Acetyltransferase 99.9 5.2E-22 1.1E-26 125.8 12.5 145 4-154 11-172 (177)
10 TIGR02382 wecD_rffC TDP-D-fuco 99.9 2.2E-21 4.8E-26 124.3 15.3 129 4-138 43-186 (191)
11 KOG3216 Diamine acetyltransfer 99.9 2.5E-21 5.3E-26 114.6 13.3 134 3-137 2-146 (163)
12 PRK10975 TDP-fucosamine acetyl 99.9 8.3E-21 1.8E-25 121.9 16.0 130 4-139 46-190 (194)
13 TIGR02406 ectoine_EctA L-2,4-d 99.9 5.5E-21 1.2E-25 118.7 13.5 126 7-138 1-129 (157)
14 PF13420 Acetyltransf_4: Acety 99.9 3.3E-20 7.1E-25 115.2 16.4 137 7-150 1-152 (155)
15 PF13523 Acetyltransf_8: Acety 99.9 9.2E-20 2E-24 112.8 17.2 127 7-139 1-143 (152)
16 PF00583 Acetyltransf_1: Acety 99.9 2.3E-20 5E-25 104.1 10.9 78 56-133 1-83 (83)
17 COG1247 Sortase and related ac 99.9 2.7E-19 5.9E-24 110.1 16.3 147 5-157 2-166 (169)
18 PRK10151 ribosomal-protein-L7/ 99.9 6.6E-19 1.4E-23 111.8 18.3 148 3-157 9-178 (179)
19 PF13527 Acetyltransf_9: Acety 99.8 1.2E-19 2.6E-24 109.1 13.6 118 6-135 1-127 (127)
20 PLN02706 glucosamine 6-phospha 99.8 1.6E-19 3.4E-24 111.5 13.9 125 3-136 5-143 (150)
21 PRK07922 N-acetylglutamate syn 99.8 2.1E-19 4.5E-24 112.9 14.2 123 3-137 4-127 (169)
22 KOG3235 Subunit of the major N 99.8 1.2E-20 2.7E-25 112.2 7.4 145 5-156 2-154 (193)
23 PRK15130 spermidine N1-acetylt 99.8 8.5E-19 1.8E-23 112.0 16.2 143 4-153 6-164 (186)
24 PRK10314 putative acyltransfer 99.8 5.2E-20 1.1E-24 113.7 10.0 132 20-156 16-151 (153)
25 PHA00673 acetyltransferase dom 99.8 7.2E-19 1.6E-23 106.8 14.6 118 19-137 15-146 (154)
26 PF13673 Acetyltransf_10: Acet 99.8 3.1E-19 6.8E-24 105.7 12.2 85 40-132 33-117 (117)
27 PRK10809 ribosomal-protein-S5- 99.8 1.5E-18 3.3E-23 111.5 16.2 143 4-153 17-185 (194)
28 TIGR03103 trio_acet_GNAT GNAT- 99.8 8.6E-19 1.9E-23 127.4 16.3 129 4-139 82-219 (547)
29 PRK07757 acetyltransferase; Pr 99.8 7.6E-19 1.6E-23 108.7 13.2 118 5-137 2-122 (152)
30 TIGR03585 PseH pseudaminic aci 99.8 4.5E-18 9.7E-23 105.7 15.6 131 6-144 2-145 (156)
31 PRK10514 putative acetyltransf 99.8 5.8E-18 1.3E-22 104.0 14.2 119 5-140 2-129 (145)
32 PHA01807 hypothetical protein 99.8 9.1E-18 2E-22 103.0 13.9 90 41-130 43-136 (153)
33 TIGR01686 FkbH FkbH-like domai 99.8 4.5E-18 9.7E-23 116.8 13.5 124 3-135 185-319 (320)
34 PLN02825 amino-acid N-acetyltr 99.8 5.3E-18 1.2E-22 121.3 14.0 136 6-155 369-514 (515)
35 TIGR01890 N-Ac-Glu-synth amino 99.8 5.1E-18 1.1E-22 120.7 13.9 122 5-137 283-405 (429)
36 PRK10562 putative acetyltransf 99.8 2.7E-17 5.8E-22 101.1 14.9 131 7-155 2-142 (145)
37 PRK05279 N-acetylglutamate syn 99.8 4.8E-18 1E-22 121.3 12.9 135 5-154 295-440 (441)
38 TIGR03448 mycothiol_MshD mycot 99.8 9.1E-18 2E-22 114.2 13.7 87 52-138 199-289 (292)
39 PF13508 Acetyltransf_7: Acety 99.8 1.8E-17 3.9E-22 91.5 11.7 78 50-134 2-79 (79)
40 COG1246 ArgA N-acetylglutamate 99.8 2.2E-17 4.7E-22 99.1 12.2 118 6-137 2-123 (153)
41 PRK09831 putative acyltransfer 99.8 1.2E-17 2.6E-22 102.8 11.3 127 5-153 1-143 (147)
42 PRK12308 bifunctional arginino 99.8 1.3E-17 2.8E-22 123.0 13.1 123 4-138 463-585 (614)
43 COG3153 Predicted acetyltransf 99.8 9.1E-17 2E-21 99.2 14.4 143 3-157 2-152 (171)
44 PRK01346 hypothetical protein; 99.8 4.1E-17 8.9E-22 115.8 14.6 127 1-140 3-139 (411)
45 TIGR03448 mycothiol_MshD mycot 99.8 6.9E-17 1.5E-21 109.9 14.4 115 20-138 10-129 (292)
46 KOG3396 Glucosamine-phosphate 99.7 1.6E-16 3.5E-21 92.4 12.1 124 4-136 6-143 (150)
47 KOG3138 Predicted N-acetyltran 99.7 1.6E-17 3.4E-22 103.6 8.2 143 5-155 17-172 (187)
48 KOG3234 Acetyltransferase, (GN 99.7 2.4E-17 5.3E-22 98.2 8.0 115 43-157 33-153 (173)
49 PF13302 Acetyltransf_3: Acety 99.7 8E-16 1.7E-20 94.0 14.0 123 4-133 1-142 (142)
50 PF08445 FR47: FR47-like prote 99.7 3.9E-15 8.4E-20 83.1 11.4 61 76-137 22-82 (86)
51 PRK13688 hypothetical protein; 99.7 3.8E-15 8.2E-20 91.9 11.3 81 50-138 44-134 (156)
52 KOG2488 Acetyltransferase (GNA 99.6 4.8E-15 1E-19 91.3 10.8 97 43-139 84-184 (202)
53 cd02169 Citrate_lyase_ligase C 99.6 9E-15 1.9E-19 98.8 11.0 80 51-138 6-85 (297)
54 COG3393 Predicted acetyltransf 99.6 3.7E-14 8.1E-19 92.0 11.8 89 50-139 176-264 (268)
55 TIGR00124 cit_ly_ligase [citra 99.6 2.7E-13 5.9E-18 93.0 14.4 81 51-139 31-111 (332)
56 COG2153 ElaA Predicted acyltra 99.5 2.8E-14 6E-19 84.3 6.2 132 20-157 17-154 (155)
57 COG1670 RimL Acetyltransferase 99.5 4.3E-13 9.3E-18 85.3 12.3 81 60-141 77-162 (187)
58 COG3981 Predicted acetyltransf 99.5 7.2E-13 1.6E-17 80.7 11.1 88 52-140 70-162 (174)
59 PF12746 GNAT_acetyltran: GNAT 99.5 1.2E-12 2.6E-17 86.8 12.3 91 51-145 165-255 (265)
60 KOG3397 Acetyltransferases [Ge 99.5 7.6E-13 1.6E-17 80.5 10.4 118 20-141 24-145 (225)
61 PF13718 GNAT_acetyltr_2: GNAT 99.4 1.4E-11 2.9E-16 78.1 13.1 117 39-156 15-196 (196)
62 TIGR01211 ELP3 histone acetylt 99.4 9.2E-12 2E-16 90.0 12.7 87 49-138 409-517 (522)
63 cd04301 NAT_SF N-Acyltransfera 99.3 4.5E-11 9.7E-16 62.5 8.3 61 54-114 2-64 (65)
64 KOG4144 Arylalkylamine N-acety 99.2 1.8E-11 3.8E-16 73.2 4.6 124 5-137 12-161 (190)
65 PF12568 DUF3749: Acetyltransf 99.2 4.8E-10 1E-14 65.6 10.2 85 48-135 35-123 (128)
66 PF08444 Gly_acyl_tr_C: Aralky 99.2 8.5E-11 1.8E-15 64.6 6.7 73 59-136 7-79 (89)
67 PF14542 Acetyltransf_CG: GCN5 99.1 1.7E-09 3.7E-14 59.0 9.7 70 54-129 2-71 (78)
68 COG3818 Predicted acetyltransf 99.1 5.5E-10 1.2E-14 65.1 7.1 128 2-139 5-150 (167)
69 COG1444 Predicted P-loop ATPas 99.0 2.1E-08 4.5E-13 75.0 14.5 116 40-157 459-612 (758)
70 COG2388 Predicted acetyltransf 99.0 3.3E-09 7.2E-14 59.9 7.1 63 48-110 12-74 (99)
71 KOG4135 Predicted phosphogluco 99.0 4.1E-08 8.9E-13 58.7 11.8 77 61-137 83-170 (185)
72 COG5628 Predicted acetyltransf 98.9 6.4E-08 1.4E-12 55.7 9.8 84 47-134 33-120 (143)
73 COG4552 Eis Predicted acetyltr 98.9 1.9E-08 4.1E-13 68.4 7.8 85 50-139 38-129 (389)
74 COG3375 Uncharacterized conser 98.8 3.3E-07 7E-12 58.6 12.7 138 3-146 1-146 (266)
75 PF00765 Autoind_synth: Autoin 98.7 1.2E-06 2.7E-11 55.6 11.7 133 20-155 9-173 (182)
76 PRK13834 putative autoinducer 98.6 9.7E-06 2.1E-10 52.6 13.5 116 18-136 15-164 (207)
77 COG3053 CitC Citrate lyase syn 98.4 4.3E-06 9.3E-11 55.9 9.7 80 53-140 38-118 (352)
78 COG3916 LasI N-acyl-L-homoseri 98.4 2.3E-05 4.9E-10 50.0 11.6 134 20-156 16-182 (209)
79 COG0454 WecD Histone acetyltra 98.4 6.3E-07 1.4E-11 52.5 4.6 44 81-132 87-130 (156)
80 PF13480 Acetyltransf_6: Acety 98.3 4.1E-05 8.9E-10 46.4 11.9 66 50-116 70-135 (142)
81 COG3882 FkbH Predicted enzyme 98.3 3.4E-06 7.4E-11 60.1 7.3 126 4-136 413-549 (574)
82 TIGR03694 exosort_acyl putativ 98.3 1.5E-05 3.3E-10 53.0 10.0 113 20-136 18-197 (241)
83 PF06852 DUF1248: Protein of u 98.3 0.00018 3.9E-09 45.5 13.6 114 20-137 14-137 (181)
84 PF04958 AstA: Arginine N-succ 98.2 0.00013 2.9E-09 50.5 13.0 126 5-136 2-187 (342)
85 PF01233 NMT: Myristoyl-CoA:pr 98.2 0.00029 6.2E-09 43.3 12.9 98 18-115 34-150 (162)
86 PRK10456 arginine succinyltran 97.9 0.00025 5.3E-09 49.1 9.9 126 5-136 2-185 (344)
87 cd04264 DUF619-NAGS DUF619 dom 97.9 0.00035 7.6E-09 39.8 8.4 66 52-122 9-76 (99)
88 PF11039 DUF2824: Protein of u 97.9 0.0015 3.2E-08 38.6 11.3 100 49-151 36-136 (151)
89 PRK14852 hypothetical protein; 97.8 0.00025 5.5E-09 55.4 9.9 135 19-156 38-200 (989)
90 PF04377 ATE_C: Arginine-tRNA- 97.8 0.0018 4E-08 38.7 11.2 78 39-117 25-104 (128)
91 TIGR03245 arg_AOST_alph argini 97.8 0.00066 1.4E-08 46.9 10.0 125 6-136 1-184 (336)
92 TIGR03244 arg_catab_AstA argin 97.7 0.00078 1.7E-08 46.6 10.1 89 7-101 2-143 (336)
93 PF13880 Acetyltransf_13: ESCO 97.7 8.8E-05 1.9E-09 39.2 4.3 30 75-104 5-34 (70)
94 TIGR03243 arg_catab_AOST argin 97.7 0.00094 2E-08 46.2 10.1 125 6-136 1-183 (335)
95 PF05301 Mec-17: Touch recepto 97.7 0.0013 2.8E-08 38.5 8.8 71 60-133 18-102 (120)
96 COG1243 ELP3 Histone acetyltra 97.7 8.8E-05 1.9E-09 52.8 4.7 50 84-136 459-508 (515)
97 cd04265 DUF619-NAGS-U DUF619 d 97.6 0.00097 2.1E-08 38.0 7.8 65 53-122 11-76 (99)
98 TIGR03827 GNAT_ablB putative b 97.6 0.00031 6.6E-09 47.6 6.8 63 91-157 21-83 (266)
99 PRK01305 arginyl-tRNA-protein 97.5 0.0086 1.9E-07 39.9 12.3 79 39-118 130-210 (240)
100 TIGR03019 pepcterm_femAB FemAB 97.5 0.0041 9E-08 43.5 11.6 93 50-143 194-287 (330)
101 PHA01733 hypothetical protein 97.4 0.00082 1.8E-08 41.0 6.0 82 54-138 50-133 (153)
102 PHA00432 internal virion prote 97.4 0.002 4.3E-08 38.7 7.4 85 50-137 36-121 (137)
103 PF01853 MOZ_SAS: MOZ/SAS fami 97.4 0.0021 4.6E-08 40.8 7.5 48 61-108 66-113 (188)
104 KOG2535 RNA polymerase II elon 97.1 0.001 2.2E-08 46.0 4.4 49 86-137 498-547 (554)
105 PLN03238 probable histone acet 97.0 0.0056 1.2E-07 41.4 6.9 50 59-108 139-188 (290)
106 KOG2036 Predicted P-loop ATPas 96.9 0.0063 1.4E-07 46.2 7.5 83 75-157 614-746 (1011)
107 PF09924 DUF2156: Uncharacteri 96.8 0.065 1.4E-06 37.0 11.6 68 49-117 178-247 (299)
108 PF13444 Acetyltransf_5: Acety 96.7 0.01 2.2E-07 34.1 5.6 49 49-97 28-100 (101)
109 PLN03239 histone acetyltransfe 96.6 0.012 2.5E-07 41.0 6.2 50 59-108 197-246 (351)
110 KOG2779 N-myristoyl transferas 96.5 0.03 6.4E-07 39.1 7.9 92 17-108 90-200 (421)
111 PTZ00064 histone acetyltransfe 96.5 0.0099 2.1E-07 43.2 5.9 50 59-108 368-417 (552)
112 COG3138 AstA Arginine/ornithin 96.2 0.033 7.2E-07 37.7 6.6 88 5-98 2-142 (336)
113 PLN00104 MYST -like histone ac 96.2 0.011 2.4E-07 42.6 4.5 50 59-108 290-339 (450)
114 cd04266 DUF619-NAGS-FABP DUF61 96.0 0.14 3.1E-06 29.7 8.0 65 53-122 11-83 (108)
115 KOG4601 Uncharacterized conser 95.9 0.11 2.4E-06 34.1 7.8 70 60-132 81-163 (264)
116 PF09390 DUF1999: Protein of u 95.6 0.26 5.6E-06 30.0 12.1 85 49-137 53-141 (161)
117 PF04768 DUF619: Protein of un 95.5 0.33 7.1E-06 30.8 8.6 106 19-134 32-143 (170)
118 PF02474 NodA: Nodulation prot 95.3 0.056 1.2E-06 33.9 4.7 136 18-157 17-178 (196)
119 KOG2747 Histone acetyltransfer 95.2 0.042 9.1E-07 39.0 4.4 34 74-107 259-292 (396)
120 COG2401 ABC-type ATPase fused 95.2 0.023 5.1E-07 40.9 3.1 61 76-136 242-307 (593)
121 PF02388 FemAB: FemAB family; 95.0 0.42 9.1E-06 34.7 9.1 107 51-157 35-160 (406)
122 KOG3014 Protein involved in es 94.8 0.77 1.7E-05 30.7 9.6 84 16-104 101-212 (257)
123 KOG2696 Histone acetyltransfer 94.4 0.22 4.7E-06 35.2 6.1 59 62-121 200-262 (403)
124 COG2935 Putative arginyl-tRNA: 94.3 1 2.2E-05 30.2 11.1 60 59-119 159-218 (253)
125 COG5092 NMT1 N-myristoyl trans 94.2 0.83 1.8E-05 31.8 8.4 90 20-109 91-199 (451)
126 cd03173 DUF619-like DUF619 dom 93.8 0.69 1.5E-05 26.4 8.6 65 53-122 11-75 (98)
127 PF12261 T_hemolysin: Thermost 93.5 1.1 2.4E-05 28.7 7.7 55 75-136 87-141 (179)
128 PRK02983 lysS lysyl-tRNA synth 93.3 0.99 2.1E-05 37.2 8.8 59 59-118 429-487 (1094)
129 COG5027 SAS2 Histone acetyltra 93.3 0.058 1.3E-06 37.6 1.9 40 61-100 248-287 (395)
130 PF11124 Pho86: Inorganic phos 92.5 2.6 5.6E-05 29.3 9.0 83 54-136 172-270 (304)
131 PF04339 DUF482: Protein of un 92.4 3.1 6.7E-05 30.0 11.0 128 4-140 199-332 (370)
132 PF11090 DUF2833: Protein of u 91.9 1.3 2.8E-05 24.5 6.8 28 109-136 56-83 (86)
133 KOG4387 Ornithine decarboxylas 91.6 2.3 5E-05 27.0 7.1 77 81-157 105-185 (191)
134 PRK04531 acetylglutamate kinas 91.4 3.3 7.1E-05 30.2 8.7 94 20-127 263-356 (398)
135 KOG2779 N-myristoyl transferas 91.0 4.3 9.3E-05 28.9 8.8 123 7-142 263-402 (421)
136 PHA02769 hypothetical protein; 89.1 0.65 1.4E-05 27.1 3.0 44 93-138 94-140 (154)
137 COG2348 Peptidoglycan interpep 88.3 7.2 0.00016 28.6 8.3 93 51-143 40-150 (418)
138 PRK00756 acyltransferase NodA; 88.0 1.2 2.6E-05 28.0 3.8 99 19-118 18-127 (196)
139 COG2898 Uncharacterized conser 87.6 6.8 0.00015 29.8 8.1 62 55-117 397-459 (538)
140 KOG3698 Hyaluronoglucosaminida 86.1 1.7 3.7E-05 33.0 4.3 58 81-138 822-879 (891)
141 COG5630 ARG2 Acetylglutamate s 83.8 12 0.00027 27.1 7.4 81 20-104 346-430 (495)
142 PF02799 NMT_C: Myristoyl-CoA: 81.9 12 0.00025 24.4 12.0 121 7-141 31-169 (190)
143 PF02100 ODC_AZ: Ornithine dec 80.3 9.4 0.0002 22.3 6.9 71 83-154 30-107 (108)
144 PHA00771 head assembly protein 78.9 12 0.00025 22.6 9.8 90 58-150 45-135 (151)
145 cd04263 DUF619-NAGK-FABP DUF61 78.7 10 0.00022 21.7 8.6 64 53-121 11-74 (98)
146 cd07235 MRD Mitomycin C resist 78.5 3.4 7.3E-05 24.0 3.1 25 111-136 3-27 (122)
147 cd08353 Glo_EDI_BRP_like_7 Thi 78.3 3.1 6.6E-05 25.0 2.9 29 108-137 3-31 (142)
148 PF00925 GTP_cyclohydro2: GTP 77.0 7.9 0.00017 24.5 4.5 47 84-139 122-168 (169)
149 PF04816 DUF633: Family of unk 74.8 8.3 0.00018 25.3 4.3 48 91-138 74-123 (205)
150 COG2266 GTP:adenosylcobinamide 73.4 14 0.00029 23.7 4.7 47 93-140 26-72 (177)
151 PF13380 CoA_binding_2: CoA bi 73.3 12 0.00027 21.9 4.5 89 39-136 16-107 (116)
152 COG4866 Uncharacterized conser 72.4 28 0.00061 23.8 6.4 79 5-89 152-241 (294)
153 PF14696 Glyoxalase_5: Hydroxy 72.0 3.3 7.1E-05 25.4 1.8 32 107-139 8-39 (139)
154 COG3473 Maleate cis-trans isom 71.4 14 0.00029 24.5 4.5 38 101-138 110-150 (238)
155 PF04339 DUF482: Protein of un 71.2 37 0.00081 24.7 11.5 83 51-136 44-159 (370)
156 COG5653 Protein involved in ce 70.9 39 0.00085 24.8 8.7 66 52-118 273-338 (406)
157 TIGR02990 ectoine_eutA ectoine 69.2 10 0.00022 25.6 3.8 44 94-137 105-151 (239)
158 PF03376 Adeno_E3B: Adenovirus 68.2 2.6 5.6E-05 21.8 0.7 14 83-96 52-65 (67)
159 PTZ00129 40S ribosomal protein 67.6 27 0.00059 21.7 6.5 48 91-138 71-130 (149)
160 cd08356 Glo_EDI_BRP_like_17 Th 67.5 4.6 0.0001 23.3 1.8 20 119-138 11-30 (113)
161 PF07395 Mig-14: Mig-14; Inte 67.5 38 0.00082 23.4 6.4 57 54-110 176-239 (264)
162 cd08342 HPPD_N_like N-terminal 67.5 12 0.00026 22.3 3.7 29 110-139 2-31 (136)
163 PF03588 Leu_Phe_trans: Leucyl 67.3 30 0.00066 22.2 11.8 106 20-136 61-172 (173)
164 cd09012 Glo_EDI_BRP_like_24 Th 65.3 5.5 0.00012 23.2 1.9 18 119-136 10-27 (124)
165 cd08344 MhqB_like_N N-terminal 65.0 10 0.00022 21.6 2.9 28 109-137 3-30 (112)
166 cd07267 THT_Oxygenase_N N-term 64.8 9.8 0.00021 21.8 2.8 28 109-137 4-31 (113)
167 PRK15312 antimicrobial resista 64.7 46 0.001 23.3 6.5 57 53-109 205-268 (298)
168 PF06559 DCD: 2'-deoxycytidine 64.1 4.6 0.0001 28.6 1.5 37 56-92 320-356 (364)
169 cd08346 PcpA_N_like N-terminal 63.6 14 0.00031 21.2 3.4 29 109-138 2-31 (126)
170 PF08901 DUF1847: Protein of u 62.7 16 0.00034 22.9 3.4 44 97-140 43-90 (157)
171 cd08358 Glo_EDI_BRP_like_21 Th 62.5 19 0.0004 21.7 3.7 27 111-138 5-32 (127)
172 PF02836 Glyco_hydro_2_C: Glyc 62.3 47 0.001 23.1 6.2 67 74-140 13-81 (298)
173 cd08350 BLMT_like BLMT, a bleo 61.5 8.5 0.00018 22.3 2.2 21 119-139 12-32 (120)
174 PRK10150 beta-D-glucuronidase; 60.8 73 0.0016 24.8 7.4 66 74-139 290-357 (604)
175 TIGR03645 glyox_marine lactoyl 59.4 14 0.00031 22.9 3.0 28 107-135 3-31 (162)
176 COG2384 Predicted SAM-dependen 59.3 28 0.0006 23.3 4.3 48 91-138 93-142 (226)
177 PF00571 CBS: CBS domain CBS d 58.8 16 0.00035 17.8 2.7 23 46-68 25-48 (57)
178 PRK09318 bifunctional 3,4-dihy 58.1 33 0.00072 25.1 4.9 33 105-139 324-356 (387)
179 PRK00393 ribA GTP cyclohydrola 57.8 41 0.00089 22.0 4.9 47 83-138 123-169 (197)
180 PF00903 Glyoxalase: Glyoxalas 57.6 18 0.00039 20.7 3.1 30 109-139 2-32 (128)
181 COG0807 RibA GTP cyclohydrolas 57.3 33 0.00072 22.4 4.4 51 81-140 120-170 (193)
182 TIGR00505 ribA GTP cyclohydrol 56.8 41 0.0009 21.8 4.8 46 84-138 121-166 (191)
183 PF04015 DUF362: Domain of unk 55.0 43 0.00094 21.8 4.8 47 91-137 19-67 (206)
184 TIGR00667 aat leucyl/phenylala 54.8 57 0.0012 21.2 10.8 107 20-137 63-173 (185)
185 KOG4039 Serine/threonine kinas 54.2 51 0.0011 21.5 4.7 34 96-129 110-144 (238)
186 COG3607 Predicted lactoylgluta 53.9 8.6 0.00019 23.1 1.2 20 119-138 13-32 (133)
187 PRK09319 bifunctional 3,4-dihy 53.5 41 0.00089 25.9 4.9 33 105-139 347-379 (555)
188 cd08352 Glo_EDI_BRP_like_1 Thi 53.3 29 0.00062 19.8 3.5 28 108-136 3-31 (125)
189 PF07315 DUF1462: Protein of u 52.5 29 0.00063 19.5 3.0 28 38-65 53-80 (93)
190 PRK14968 putative methyltransf 52.3 57 0.0012 20.5 5.2 45 96-140 130-174 (188)
191 PF12953 DUF3842: Domain of un 52.2 33 0.00072 20.8 3.5 47 86-136 6-52 (131)
192 cd07253 Glo_EDI_BRP_like_2 Thi 51.7 24 0.00053 20.1 3.0 30 108-138 3-33 (125)
193 COG2231 Uncharacterized protei 51.4 19 0.00042 23.7 2.6 40 90-136 121-160 (215)
194 TIGR03628 arch_S11P archaeal r 50.1 53 0.0011 19.5 6.3 51 88-138 42-104 (114)
195 cd08362 BphC5-RrK37_N_like N-t 50.0 27 0.00059 19.9 3.0 30 108-138 3-33 (120)
196 cd07265 2_3_CTD_N N-terminal d 49.8 29 0.00062 20.0 3.1 29 109-138 5-34 (122)
197 cd07243 2_3_CTD_C C-terminal d 49.7 35 0.00077 20.6 3.6 30 108-138 6-36 (143)
198 PF11633 SUD-M: Single-strande 49.6 30 0.00064 21.1 3.0 41 96-139 24-64 (142)
199 PRK09607 rps11p 30S ribosomal 49.4 59 0.0013 19.8 6.3 49 90-138 51-111 (132)
200 COG0346 GloA Lactoylglutathion 48.5 32 0.0007 19.5 3.3 30 109-139 3-33 (138)
201 TIGR00068 glyox_I lactoylgluta 48.1 27 0.00059 21.2 2.9 31 106-137 15-46 (150)
202 PHA02456 zinc metallopeptidase 47.7 57 0.0012 19.2 4.6 29 77-105 64-92 (141)
203 PF12681 Glyoxalase_2: Glyoxal 47.6 28 0.0006 19.4 2.8 19 121-139 7-26 (108)
204 COG3640 CooC CO dehydrogenase 47.3 91 0.002 21.4 6.9 60 76-139 156-218 (255)
205 KOG1472 Histone acetyltransfer 47.2 5.6 0.00012 31.2 -0.3 86 49-137 417-505 (720)
206 cd07242 Glo_EDI_BRP_like_6 Thi 47.0 40 0.00086 19.5 3.5 30 108-138 1-34 (128)
207 cd07237 BphC1-RGP6_C_like C-te 46.5 45 0.00099 20.5 3.8 30 107-137 8-38 (154)
208 PLN02831 Bifunctional GTP cycl 45.8 59 0.0013 24.4 4.7 33 105-139 377-409 (450)
209 cd07240 ED_TypeI_classII_N N-t 45.8 39 0.00085 19.0 3.3 28 110-138 4-32 (117)
210 PRK14019 bifunctional 3,4-dihy 45.6 66 0.0014 23.4 4.8 33 103-138 330-362 (367)
211 PRK08815 GTP cyclohydrolase; P 45.4 68 0.0015 23.5 4.8 47 84-139 295-341 (375)
212 PF00411 Ribosomal_S11: Riboso 45.4 62 0.0013 18.9 5.4 51 88-138 39-93 (110)
213 PRK11478 putative lyase; Provi 45.0 29 0.00064 20.1 2.7 28 108-136 6-34 (129)
214 PRK00301 aat leucyl/phenylalan 44.9 97 0.0021 21.0 10.7 89 38-137 115-203 (233)
215 PRK14831 undecaprenyl pyrophos 44.6 35 0.00077 23.3 3.2 34 85-118 41-74 (249)
216 cd07244 FosA FosA, a Fosfomyci 44.6 51 0.0011 19.0 3.6 28 109-137 2-30 (121)
217 PF10566 Glyco_hydro_97: Glyco 44.4 70 0.0015 22.3 4.6 40 94-134 72-122 (273)
218 PRK12485 bifunctional 3,4-dihy 43.9 65 0.0014 23.5 4.5 32 104-138 334-365 (369)
219 PRK09311 bifunctional 3,4-dihy 43.5 73 0.0016 23.6 4.8 33 105-139 343-375 (402)
220 cd07252 BphC1-RGP6_N_like N-te 43.5 38 0.00083 19.5 3.0 28 109-137 3-31 (120)
221 cd04619 CBS_pair_6 The CBS dom 43.4 61 0.0013 18.3 3.9 26 44-69 83-109 (114)
222 PRK14837 undecaprenyl pyrophos 43.0 42 0.00091 22.7 3.3 34 85-118 27-60 (230)
223 TIGR00055 uppS undecaprenyl di 42.9 43 0.00093 22.5 3.3 34 85-118 20-53 (226)
224 PRK05031 tRNA (uracil-5-)-meth 42.6 1.3E+02 0.0028 21.8 6.3 66 79-152 290-356 (362)
225 COG1658 Small primase-like pro 41.8 24 0.00051 21.3 1.8 22 81-102 60-81 (127)
226 COG3543 Uncharacterized conser 41.6 53 0.0011 19.9 3.2 36 84-119 13-49 (135)
227 COG3250 LacZ Beta-galactosidas 41.1 2E+02 0.0044 23.7 7.1 67 73-139 297-365 (808)
228 COG1212 KdsB CMP-2-keto-3-deox 41.0 1.1E+02 0.0024 20.8 4.8 47 93-141 27-73 (247)
229 cd00641 GTP_cyclohydro2 GTP cy 40.0 1E+02 0.0023 20.0 4.8 46 84-138 123-168 (193)
230 cd07241 Glo_EDI_BRP_like_3 Thi 39.8 50 0.0011 18.8 3.1 26 110-136 3-29 (125)
231 cd07255 Glo_EDI_BRP_like_12 Th 39.5 55 0.0012 18.8 3.3 29 109-138 3-32 (125)
232 cd08364 FosX FosX, a fosfomyci 39.5 56 0.0012 19.3 3.3 29 108-137 4-33 (131)
233 KOG2499 Beta-N-acetylhexosamin 38.5 37 0.00081 25.6 2.7 32 105-136 330-361 (542)
234 cd08348 BphC2-C3-RGP6_C_like T 37.8 71 0.0015 18.7 3.6 29 110-139 3-32 (134)
235 PRK14829 undecaprenyl pyrophos 37.7 48 0.001 22.6 3.0 33 85-117 35-67 (243)
236 PF13289 SIR2_2: SIR2-like dom 37.6 90 0.002 18.5 4.3 24 111-134 118-142 (143)
237 PRK14842 undecaprenyl pyrophos 37.5 59 0.0013 22.1 3.4 34 85-118 29-62 (241)
238 PRK14841 undecaprenyl pyrophos 37.3 58 0.0013 22.0 3.3 34 85-118 24-57 (233)
239 PLN02300 lactoylglutathione ly 37.2 43 0.00092 23.1 2.8 38 99-137 13-53 (286)
240 COG0623 FabI Enoyl-[acyl-carri 36.6 95 0.0021 21.2 4.1 43 76-118 144-187 (259)
241 PF02388 FemAB: FemAB family; 36.5 1.8E+02 0.0038 21.6 9.6 54 61-115 303-356 (406)
242 cd00475 CIS_IPPS Cis (Z)-Isopr 36.4 61 0.0013 21.7 3.3 34 85-118 21-54 (221)
243 cd08349 BLMA_like Bleomycin bi 36.3 39 0.00084 18.8 2.2 19 120-138 9-28 (112)
244 cd09013 BphC-JF8_N_like N-term 36.3 65 0.0014 18.5 3.2 30 108-138 6-36 (121)
245 PRK10291 glyoxalase I; Provisi 35.9 43 0.00093 19.6 2.4 18 120-137 7-25 (129)
246 PRK14832 undecaprenyl pyrophos 35.8 52 0.0011 22.6 2.9 34 85-118 39-72 (253)
247 cd07238 Glo_EDI_BRP_like_5 Thi 35.7 35 0.00076 19.2 2.0 18 119-136 10-28 (112)
248 PRK03681 hypA hydrogenase nick 35.7 96 0.0021 18.3 3.8 37 91-127 5-47 (114)
249 PRK10240 undecaprenyl pyrophos 35.6 52 0.0011 22.2 2.9 34 85-118 14-47 (229)
250 PF13530 SCP2_2: Sterol carrie 35.4 1.3E+02 0.0029 19.8 8.8 61 50-117 24-89 (218)
251 PF12652 CotJB: CotJB protein; 35.1 19 0.00041 19.7 0.7 20 111-130 19-38 (78)
252 cd07266 HPCD_N_class_II N-term 35.1 53 0.0011 18.8 2.7 29 108-137 4-33 (121)
253 COG0529 CysC Adenylylsulfate k 34.9 31 0.00067 22.4 1.7 42 96-140 39-80 (197)
254 PLN02979 glycolate oxidase 34.7 94 0.002 22.7 4.1 39 95-133 134-172 (366)
255 cd04641 CBS_pair_28 The CBS do 34.7 90 0.002 17.7 4.1 26 43-68 88-114 (120)
256 COG5270 PUA domain (predicted 34.6 72 0.0016 20.8 3.2 19 51-69 163-181 (202)
257 cd07264 Glo_EDI_BRP_like_15 Th 34.6 65 0.0014 18.4 3.0 24 112-136 4-28 (125)
258 PRK06724 hypothetical protein; 34.5 73 0.0016 18.9 3.2 27 108-135 7-37 (128)
259 cd07249 MMCE Methylmalonyl-CoA 34.3 46 0.001 19.1 2.4 28 110-138 2-30 (128)
260 PTZ00349 dehydrodolichyl dipho 34.3 60 0.0013 23.2 3.1 34 85-118 40-73 (322)
261 PRK01346 hypothetical protein; 34.1 1.9E+02 0.0041 21.2 6.7 50 57-114 216-273 (411)
262 PRK14834 undecaprenyl pyrophos 34.1 77 0.0017 21.7 3.5 34 85-118 35-68 (249)
263 COG5092 NMT1 N-myristoyl trans 33.6 1.8E+02 0.0039 20.9 7.0 79 59-142 319-419 (451)
264 cd08357 Glo_EDI_BRP_like_18 Th 33.3 82 0.0018 17.9 3.3 18 120-137 10-28 (125)
265 TIGR00377 ant_ant_sig anti-ant 33.3 93 0.002 17.4 4.6 37 96-135 63-99 (108)
266 PRK14840 undecaprenyl pyrophos 33.0 66 0.0014 22.0 3.1 34 85-118 43-76 (250)
267 TIGR00100 hypA hydrogenase nic 33.0 79 0.0017 18.6 3.1 27 91-117 5-34 (115)
268 PRK14833 undecaprenyl pyrophos 32.6 78 0.0017 21.4 3.3 34 85-118 25-58 (233)
269 cd04182 GT_2_like_f GT_2_like_ 32.6 70 0.0015 20.0 3.1 40 93-132 25-64 (186)
270 cd07263 Glo_EDI_BRP_like_16 Th 32.6 47 0.001 18.6 2.2 19 120-138 9-28 (119)
271 PRK14839 undecaprenyl pyrophos 32.5 70 0.0015 21.8 3.1 34 85-118 30-63 (239)
272 cd07262 Glo_EDI_BRP_like_19 Th 32.4 78 0.0017 18.1 3.1 27 111-138 3-33 (123)
273 cd01027 TOPRIM_RNase_M5_like T 32.3 30 0.00065 18.9 1.2 23 80-102 49-71 (81)
274 cd04736 MDH_FMN Mandelate dehy 32.1 1.2E+02 0.0025 22.2 4.3 40 95-134 128-167 (361)
275 PRK14827 undecaprenyl pyrophos 32.1 60 0.0013 22.9 2.8 33 85-117 88-120 (296)
276 cd04607 CBS_pair_NTP_transfera 31.9 98 0.0021 17.3 3.8 27 43-69 81-108 (113)
277 cd08360 MhqB_like_C C-terminal 31.9 85 0.0019 18.5 3.3 28 109-137 4-32 (134)
278 cd07043 STAS_anti-anti-sigma_f 31.9 92 0.002 16.9 5.0 39 93-134 55-93 (99)
279 PF12294 DUF3626: Protein of u 31.8 19 0.00042 25.0 0.5 24 78-101 191-214 (297)
280 PRK12380 hydrogenase nickel in 31.4 89 0.0019 18.4 3.1 37 91-127 5-47 (113)
281 cd02540 GT2_GlmU_N_bac N-termi 31.0 1.2E+02 0.0025 19.8 4.1 42 93-134 25-66 (229)
282 PRK07758 hypothetical protein; 30.9 55 0.0012 18.7 2.1 21 89-109 72-92 (95)
283 PF01255 Prenyltransf: Putativ 30.7 49 0.0011 22.1 2.2 32 87-118 17-48 (223)
284 PF02268 TFIIA_gamma_N: Transc 30.6 76 0.0017 15.6 2.8 22 86-107 5-26 (49)
285 cd08343 ED_TypeI_classII_C C-t 30.5 92 0.002 18.2 3.2 18 120-137 10-28 (131)
286 cd08361 PpCmtC_N N-terminal do 30.4 64 0.0014 18.8 2.5 28 109-137 7-35 (124)
287 cd04597 CBS_pair_DRTGG_assoc2 30.4 1.1E+02 0.0024 17.4 4.0 27 43-69 81-108 (113)
288 cd04610 CBS_pair_ParBc_assoc T 30.4 1E+02 0.0022 16.9 4.0 17 52-68 85-101 (107)
289 cd04604 CBS_pair_KpsF_GutQ_ass 30.3 1E+02 0.0022 17.0 3.9 18 51-68 91-108 (114)
290 cd04591 CBS_pair_EriC_assoc_eu 30.1 1.1E+02 0.0023 17.1 4.5 28 42-69 73-100 (105)
291 CHL00041 rps11 ribosomal prote 30.0 1.3E+02 0.0027 17.9 6.5 57 82-138 46-106 (116)
292 TIGR01417 PTS_I_fam phosphoeno 29.8 1.6E+02 0.0034 23.0 4.9 45 95-139 482-526 (565)
293 PF04555 XhoI: Restriction end 29.8 1.3E+02 0.0028 19.7 3.7 39 80-118 144-182 (196)
294 PRK14835 undecaprenyl pyrophos 29.8 71 0.0015 22.2 2.9 34 85-118 62-95 (275)
295 cd04883 ACT_AcuB C-terminal AC 29.8 87 0.0019 16.0 3.6 27 110-136 43-70 (72)
296 PF04796 RepA_C: Plasmid encod 29.5 1.3E+02 0.0029 19.1 3.8 40 92-136 6-45 (161)
297 TIGR03632 bact_S11 30S ribosom 29.4 1.2E+02 0.0027 17.6 6.5 55 83-137 34-92 (108)
298 PRK13886 conjugal transfer pro 29.1 1.4E+02 0.003 20.4 4.1 44 90-134 12-56 (241)
299 cd04596 CBS_pair_DRTGG_assoc T 29.0 1.1E+02 0.0024 16.9 3.9 25 44-68 77-102 (108)
300 COG0826 Collagenase and relate 28.9 2E+02 0.0043 20.9 5.0 24 112-135 118-141 (347)
301 cd04589 CBS_pair_CAP-ED_DUF294 28.9 1.1E+02 0.0024 16.9 4.5 29 41-69 78-106 (111)
302 COG0100 RpsK Ribosomal protein 28.8 1.4E+02 0.0031 18.2 6.2 58 81-138 50-111 (129)
303 KOG0538 Glycolate oxidase [Ene 28.8 2.2E+02 0.0049 20.5 5.8 38 76-120 122-159 (363)
304 PF06414 Zeta_toxin: Zeta toxi 28.7 1.7E+02 0.0036 18.9 5.6 43 93-136 78-124 (199)
305 PF00376 MerR: MerR family reg 28.5 54 0.0012 14.9 1.5 15 120-134 12-26 (38)
306 KOG1201 Hydroxysteroid 17-beta 28.5 1.8E+02 0.004 20.6 4.6 40 88-131 46-86 (300)
307 PRK11197 lldD L-lactate dehydr 28.4 1.3E+02 0.0029 22.1 4.1 39 95-133 135-173 (381)
308 PRK14838 undecaprenyl pyrophos 28.3 88 0.0019 21.3 3.1 34 85-118 31-64 (242)
309 PRK09314 bifunctional 3,4-dihy 28.3 1.9E+02 0.0041 21.0 4.8 10 126-135 303-312 (339)
310 PRK00762 hypA hydrogenase nick 28.3 1.4E+02 0.003 17.9 3.9 27 91-117 5-34 (124)
311 PF01155 HypA: Hydrogenase exp 28.3 1E+02 0.0022 18.1 3.0 27 91-117 5-34 (113)
312 cd07233 Glyoxalase_I Glyoxalas 28.2 1.2E+02 0.0026 17.1 4.0 26 111-137 3-29 (121)
313 smart00116 CBS Domain in cysta 27.9 66 0.0014 14.0 3.6 16 53-68 26-41 (49)
314 PF01136 Peptidase_U32: Peptid 27.8 1.5E+02 0.0033 19.6 4.2 21 116-136 45-65 (233)
315 cd06587 Glo_EDI_BRP_like This 27.7 81 0.0018 17.0 2.6 21 119-139 8-29 (112)
316 COG0375 HybF Zn finger protein 27.6 1.4E+02 0.0031 17.8 4.1 37 91-127 5-47 (115)
317 cd04642 CBS_pair_29 The CBS do 27.6 1.3E+02 0.0028 17.3 4.1 16 53-68 105-120 (126)
318 COG3620 Predicted transcriptio 27.6 1.7E+02 0.0038 18.8 4.5 42 25-67 133-175 (187)
319 PF14871 GHL6: Hypothetical gl 27.5 1.3E+02 0.0028 18.2 3.5 28 88-115 37-64 (132)
320 PF02679 ComA: (2R)-phospho-3- 27.5 2.1E+02 0.0045 19.7 4.9 43 96-138 85-133 (244)
321 PRK08533 flagellar accessory p 27.5 1.6E+02 0.0035 19.7 4.2 44 91-134 34-78 (230)
322 cd04627 CBS_pair_14 The CBS do 27.5 1.3E+02 0.0028 17.2 4.1 26 44-69 92-118 (123)
323 PF05063 MT-A70: MT-A70 ; Int 27.4 1.7E+02 0.0037 18.6 5.2 32 106-137 43-75 (176)
324 PF13704 Glyco_tranf_2_4: Glyc 27.2 1.2E+02 0.0025 16.7 5.2 35 96-130 6-40 (97)
325 PF12804 NTP_transf_3: MobA-li 27.1 91 0.002 19.0 2.9 43 93-137 23-65 (160)
326 cd04587 CBS_pair_CAP-ED_DUF294 27.0 1.2E+02 0.0026 16.8 3.5 26 43-68 81-107 (113)
327 PRK14828 undecaprenyl pyrophos 27.0 1E+02 0.0022 21.2 3.2 30 88-117 51-80 (256)
328 cd08355 Glo_EDI_BRP_like_14 Th 26.9 73 0.0016 18.2 2.3 20 119-138 9-29 (122)
329 PF02896 PEP-utilizers_C: PEP- 26.7 1.2E+02 0.0026 21.4 3.6 47 94-140 234-280 (293)
330 cd09011 Glo_EDI_BRP_like_23 Th 25.8 1.1E+02 0.0024 17.5 2.9 25 111-136 5-30 (120)
331 PRK00564 hypA hydrogenase nick 25.6 1.3E+02 0.0028 17.8 3.1 27 91-117 5-34 (117)
332 PF01740 STAS: STAS domain; I 25.4 1.3E+02 0.0028 17.2 3.2 39 93-134 65-103 (117)
333 COG4837 Uncharacterized protei 25.4 1.4E+02 0.0031 17.0 4.0 29 38-66 60-88 (106)
334 cd04615 CBS_pair_2 The CBS dom 25.3 1.3E+02 0.0029 16.6 4.2 27 42-68 80-107 (113)
335 cd09014 BphC-JF8_C_like C-term 25.3 1.3E+02 0.0029 18.7 3.4 29 108-137 6-35 (166)
336 cd07246 Glo_EDI_BRP_like_8 Thi 25.2 1.4E+02 0.003 16.8 3.5 20 119-138 11-31 (122)
337 COG1064 AdhP Zn-dependent alco 25.1 2.6E+02 0.0056 20.3 5.0 42 91-136 174-215 (339)
338 cd06844 STAS Sulphate Transpor 25.1 1.4E+02 0.0029 16.7 4.9 39 93-134 56-94 (100)
339 cd04599 CBS_pair_GGDEF_assoc2 25.1 1.3E+02 0.0028 16.4 4.4 27 42-68 73-99 (105)
340 PF01751 Toprim: Toprim domain 25.1 65 0.0014 18.1 1.8 23 81-103 65-87 (100)
341 PRK04101 fosfomycin resistance 25.0 1.2E+02 0.0027 18.0 3.1 29 108-137 4-33 (139)
342 PF06849 DUF1246: Protein of u 24.9 74 0.0016 19.2 2.0 34 96-133 8-41 (124)
343 COG2360 Aat Leu/Phe-tRNA-prote 24.9 2.2E+02 0.0048 19.1 5.1 88 37-136 107-195 (221)
344 KOG3008 Quinolinate phosphorib 24.8 2.3E+02 0.0051 19.3 4.7 49 87-137 111-159 (300)
345 PLN02493 probable peroxisomal 24.6 1.8E+02 0.004 21.3 4.2 49 78-133 125-173 (367)
346 cd04197 eIF-2B_epsilon_N The N 24.6 1.1E+02 0.0024 20.0 3.1 25 94-118 31-55 (217)
347 PF11513 TA0956: Thermoplasma 24.6 1.5E+02 0.0032 16.9 6.1 45 59-110 61-105 (110)
348 PRK14830 undecaprenyl pyrophos 24.6 1.3E+02 0.0029 20.6 3.4 32 87-118 45-76 (251)
349 cd00145 POLBc DNA polymerase t 24.4 1.2E+02 0.0026 21.6 3.3 27 91-117 136-162 (323)
350 cd04623 CBS_pair_10 The CBS do 24.3 1.4E+02 0.003 16.5 4.3 27 42-68 81-107 (113)
351 COG3623 SgaU Putative L-xylulo 24.3 1.3E+02 0.0029 20.6 3.2 23 93-115 94-116 (287)
352 TIGR03032 conserved hypothetic 24.2 2.8E+02 0.0061 20.1 5.8 37 51-90 282-319 (335)
353 cd04625 CBS_pair_12 The CBS do 24.0 1.4E+02 0.003 16.5 4.4 27 42-68 80-106 (112)
354 PF07927 YcfA: YcfA-like prote 23.9 1E+02 0.0022 15.1 2.2 16 122-137 3-18 (56)
355 PF06564 YhjQ: YhjQ protein; 23.6 1.4E+02 0.003 20.4 3.3 42 91-134 12-54 (243)
356 cd07254 Glo_EDI_BRP_like_20 Th 23.2 1.5E+02 0.0032 16.8 3.2 17 121-137 13-30 (120)
357 cd08363 FosB FosB, a fosfomyci 23.2 1.5E+02 0.0032 17.5 3.2 27 110-137 2-29 (131)
358 TIGR02708 L_lactate_ox L-lacta 23.0 2.3E+02 0.005 20.8 4.5 39 95-133 146-184 (367)
359 TIGR00639 PurN phosphoribosylg 22.8 2.3E+02 0.0049 18.5 4.1 10 81-90 109-118 (190)
360 cd03332 LMO_FMN L-Lactate 2-mo 22.8 2.1E+02 0.0045 21.2 4.2 38 95-132 151-188 (383)
361 PF02219 MTHFR: Methylenetetra 22.8 2.7E+02 0.0059 19.4 6.0 41 91-131 247-287 (287)
362 PRK10340 ebgA cryptic beta-D-g 22.7 4.9E+02 0.011 22.3 7.3 65 74-138 332-398 (1021)
363 PLN02535 glycolate oxidase 22.6 2.1E+02 0.0046 20.9 4.3 35 78-119 127-161 (364)
364 PRK04017 hypothetical protein; 22.5 97 0.0021 18.9 2.2 23 80-102 69-91 (132)
365 cd04600 CBS_pair_HPP_assoc Thi 22.5 1.6E+02 0.0035 16.6 4.2 26 43-68 92-118 (124)
366 cd04592 CBS_pair_EriC_assoc_eu 22.3 1.9E+02 0.004 17.2 4.4 19 51-69 25-43 (133)
367 COG4904 Uncharacterized protei 22.2 60 0.0013 20.2 1.3 16 122-137 71-86 (174)
368 cd06409 PB1_MUG70 The MUG70 pr 22.2 1.6E+02 0.0035 16.5 2.9 29 110-138 54-82 (86)
369 COG3185 4-hydroxyphenylpyruvat 22.2 81 0.0017 22.8 2.1 32 107-138 21-52 (363)
370 PF13862 BCIP: p21-C-terminal 22.1 2.4E+02 0.0052 18.5 5.5 50 20-69 16-69 (194)
371 cd04629 CBS_pair_16 The CBS do 22.0 1.6E+02 0.0034 16.3 3.5 24 45-68 85-108 (114)
372 COG1724 Predicted RNA binding 22.0 1.2E+02 0.0026 16.0 2.1 18 121-138 10-27 (66)
373 cd04590 CBS_pair_CorC_HlyC_ass 21.9 1.6E+02 0.0034 16.2 4.5 28 41-68 77-105 (111)
374 cd05538 POLBc_Pol_II_B DNA pol 21.8 1.5E+02 0.0034 21.4 3.5 27 91-117 113-139 (347)
375 cd05531 POLBc_B2 DNA polymeras 21.7 1.6E+02 0.0036 21.3 3.6 29 90-118 128-156 (352)
376 cd04594 CBS_pair_EriC_assoc_ar 21.6 1.6E+02 0.0034 16.2 4.4 26 43-68 73-98 (104)
377 smart00481 POLIIIAc DNA polyme 21.6 1.3E+02 0.0028 15.2 4.8 39 97-135 17-58 (67)
378 TIGR03211 catechol_2_3 catecho 21.5 1.5E+02 0.0032 20.6 3.3 29 109-138 5-34 (303)
379 COG1437 CyaB Adenylate cyclase 21.3 1.8E+02 0.0039 18.9 3.3 29 111-140 80-108 (178)
380 cd06422 NTP_transferase_like_1 21.2 1.7E+02 0.0037 19.0 3.4 26 93-118 29-54 (221)
381 PRK05309 30S ribosomal protein 21.0 2.1E+02 0.0045 17.4 6.6 53 85-137 53-109 (128)
382 PF02794 HlyC: RTX toxin acylt 20.9 2.1E+02 0.0046 17.4 4.1 17 53-69 37-53 (133)
383 PRK09525 lacZ beta-D-galactosi 20.8 5.5E+02 0.012 22.1 7.4 65 74-138 348-414 (1027)
384 cd04583 CBS_pair_ABC_OpuCA_ass 20.8 1.6E+02 0.0035 16.0 4.2 25 44-68 78-103 (109)
385 PHA02324 hypothetical protein 20.7 52 0.0011 15.5 0.6 9 83-91 38-46 (47)
386 PRK07198 hypothetical protein; 20.7 1.9E+02 0.0041 21.5 3.6 46 85-139 329-375 (418)
387 PF01910 DUF77: Domain of unkn 20.5 1.8E+02 0.0039 16.4 3.6 22 95-116 51-72 (92)
388 cd04803 CBS_pair_15 The CBS do 20.5 1.8E+02 0.0039 16.4 4.0 27 42-68 89-116 (122)
389 cd07042 STAS_SulP_like_sulfate 20.3 1.7E+02 0.0037 16.1 5.1 39 95-136 60-98 (107)
390 cd04602 CBS_pair_IMPDH_2 This 20.3 1.8E+02 0.0038 16.3 4.0 27 43-69 82-109 (114)
391 cd06588 PhnB_like Escherichia 20.3 1.9E+02 0.0042 16.9 3.3 25 114-138 5-30 (128)
392 cd04585 CBS_pair_ACT_assoc2 Th 20.2 1.8E+02 0.0039 16.2 3.9 27 42-68 89-116 (122)
393 PF13911 AhpC-TSA_2: AhpC/TSA 20.1 1.7E+02 0.0036 16.8 2.9 12 124-135 46-57 (115)
394 cd02523 PC_cytidylyltransferas 20.0 1.9E+02 0.004 19.0 3.5 26 94-119 29-54 (229)
No 1
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=129.45 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=110.3
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHh-cCCceEEEEEECCe-EEEEEEEeecCC---CeEEEEEEEeccCccCCcHHH
Q 042035 20 VVDEIVKMEKKIFPKHEPLARSFDEELK-KKNSGLLYIQIHGQ-VVGYVMYAWPTS---LSASITKLAVKENYRGQGHGE 94 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~vG~~~~~~~~~---~~~~i~~~~v~~~~r~~Gig~ 94 (158)
.+..+.++....++.+.... ....+. +.+..++++.+++. .||.+.+..+.. ..++|..++|+++|||+|||+
T Consensus 26 ~l~~im~Li~k~lsepyS~~--tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~ 103 (165)
T KOG3139|consen 26 YLADIMRLIDKDLSEPYSIY--TYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGK 103 (165)
T ss_pred HHHHHHHHHhhhcCchhHHH--HHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHH
Confidence 45567777777777655422 222222 33556677776444 799999985443 359999999999999999999
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCCcceEEEeec
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADRPAYRMYMDF 155 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l 155 (158)
+|++.+++.++.+|++.|.++|...|.+|.++|+++||...++...||.++.+++.|++.+
T Consensus 104 aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYlng~dA~rl~L~~ 164 (165)
T KOG3139|consen 104 ALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYLNGMDALRLKLFF 164 (165)
T ss_pred HHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEEECCcceEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999998875
No 2
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.92 E-value=1.8e-23 Score=128.33 Aligned_cols=127 Identities=18% Similarity=0.228 Sum_probs=101.0
Q ss_pred CCcccccccCCccchhhHHHHHHHHhhhcCCC---hhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecC-----CCe
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKKIFPKH---EPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPT-----SLS 75 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~-----~~~ 75 (158)
.+.||+++++ |++.+..+..+..+.. ......+.+.+.++...++++..++++||++.+.... ...
T Consensus 3 ~~~ir~a~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~ 76 (144)
T PRK10146 3 ACELRPATQY------DTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWI 76 (144)
T ss_pred ccEEeeCcHh------hHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchh
Confidence 4789999998 7888877766544322 2223445555555556677788899999999986421 123
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+++..++|+|+|||+|+|+.|+++++++|++.|+..+.+.+...|.+|++||+++||...+
T Consensus 77 ~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 77 GEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred heeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 5688899999999999999999999999999999999999999999999999999998775
No 3
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.91 E-value=1.4e-22 Score=124.68 Aligned_cols=142 Identities=22% Similarity=0.342 Sum_probs=108.2
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEec
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVK 84 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~ 84 (158)
++||+++++ |++.+..+.......++.. ..+... .......+.+..++++||++.+... .....+..++|+
T Consensus 2 ~~iR~~~~~------D~~~l~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~-~~~~~~~~i~v~ 72 (146)
T PRK09491 2 NTISSLTPA------DLPAAYHIEQRAHAFPWSE-KTFASN-QGERYLNLKLTVNGQMAAFAITQVV-LDEATLFNIAVD 72 (146)
T ss_pred cchhcCChh------hhHHHHHHHHhcCCCCCCH-HHHHHH-HhcCceEEEEEECCeEEEEEEEEee-cCceEEEEEEEC
Confidence 578999999 8888888876554333322 222221 1222223445678999999988643 335667789999
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccC---CcceEEEeec
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSAD---RPAYRMYMDF 155 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~---~~~~~m~~~l 155 (158)
|+|||+|+|+.+++++++.+++.++..+.+.+...|.+++++|+|+||+..+..+.++... .|.+.|.+.|
T Consensus 73 ~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~d~~~~~~~~ 146 (146)
T PRK09491 73 PDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADGREDAIIMALPL 146 (146)
T ss_pred HHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCCceeEEEEeccC
Confidence 9999999999999999999988899999999999999999999999999999888776432 3777887754
No 4
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.91 E-value=1.1e-22 Score=136.30 Aligned_cols=146 Identities=15% Similarity=0.201 Sum_probs=113.9
Q ss_pred CCCcccccccCCccchhhHHHHHHHHhhhcCC---ChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEee-cCCCeEEE
Q 042035 3 SNGAVTELQRNSTNWTNVVDEIVKMEKKIFPK---HEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAW-PTSLSASI 78 (158)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~-~~~~~~~i 78 (158)
..+.||+++++ |++.+.++..+.|+. +......+...+ .....++++..+|++||++.+.. .....++|
T Consensus 114 ~~~~IR~a~~~------D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~-~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI 186 (266)
T TIGR03827 114 EGFTLRIATED------DADAMAALYRKVFPTYPFPIHDPAYLLETM-KSNVVYFGVEDGGKIIALASAEMDPENGNAEM 186 (266)
T ss_pred CceEEEECCHH------HHHHHHHHHHHHhccCCCCccCHHHHHHHh-cCCcEEEEEEECCEEEEEEEEecCCCCCcEEE
Confidence 45789999988 888888888777642 211122333333 34556677788999999998743 33457889
Q ss_pred EEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCC---cceEEEeec
Q 042035 79 TKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADR---PAYRMYMDF 155 (158)
Q Consensus 79 ~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~---~~~~m~~~l 155 (158)
..++|+|+|||+|+|+.|++++++++++.|+..+.+.+...|.+++++|+|+||+..++.++...... +..++.|.|
T Consensus 187 ~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k~l 266 (266)
T TIGR03827 187 TDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYKQL 266 (266)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999876654432 555666543
No 5
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.90 E-value=2.1e-22 Score=121.56 Aligned_cols=130 Identities=34% Similarity=0.445 Sum_probs=103.4
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHH
Q 042035 20 VVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEA 99 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~ 99 (158)
|++++.++....|+.++. ...+...+......++++.+++++||++.+.. ......+..++|+|+|||+|+|++|++.
T Consensus 1 d~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~~i~~~~v~~~~rg~G~g~~ll~~ 78 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFPWT-EAQFAEELANYHLCYLLARIGGKVVGYAGVQI-VLDEAHILNIAVKPEYQGQGIGRALLRE 78 (131)
T ss_pred CHHHHHHHHHhhCCCCCC-HHHHHHHhcCCCceEEEEecCCeEEEEEEEEe-cCCCeEEEEEEECHHHcCCCHHHHHHHH
Confidence 356778888888876433 23444444444445566666899999999864 3455678889999999999999999999
Q ss_pred HHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccC-CcceEE
Q 042035 100 AIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSAD-RPAYRM 151 (158)
Q Consensus 100 ~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~-~~~~~m 151 (158)
++++++..|+..+.+.+.+.|.++++||+++||+..+..+.++..+ .+.++|
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~ 131 (131)
T TIGR01575 79 LIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYPDPGEDAIVM 131 (131)
T ss_pred HHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccccccccCCCcccccC
Confidence 9999999899999999999999999999999999999988877654 455543
No 6
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.90 E-value=1.4e-21 Score=122.18 Aligned_cols=145 Identities=24% Similarity=0.363 Sum_probs=106.7
Q ss_pred CCCCCcccccccCCccchhhHHHHHHHHhhh--cC----CChhhHHHHHHHHhc-CCceEEEEEECCeEEEEEEEeecC-
Q 042035 1 MGSNGAVTELQRNSTNWTNVVDEIVKMEKKI--FP----KHEPLARSFDEELKK-KNSGLLYIQIHGQVVGYVMYAWPT- 72 (158)
Q Consensus 1 M~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vG~~~~~~~~- 72 (158)
|+ ++.||+++++ |+..+.++..+. +. .+....+.+...+.. .....+++..+|++||++.+....
T Consensus 1 ~~-~i~lr~~~~~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~ 73 (162)
T PRK10140 1 MS-EIVIRHAETR------DYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQR 73 (162)
T ss_pred CC-ccEEEecchh------hHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccc
Confidence 55 4899999999 777777776532 11 112223344444443 233456677799999999986421
Q ss_pred ---CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCC--
Q 042035 73 ---SLSASITKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADR-- 146 (158)
Q Consensus 73 ---~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~-- 146 (158)
...+.+ .++|+|+|||+|+|+.|++.+++++++ .|+..+.+.+.+.|.+|++||+++||+..+..+.++....
T Consensus 74 ~~~~~~~~~-~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~ 152 (162)
T PRK10140 74 PRRSHVADF-GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEY 152 (162)
T ss_pred cccceEEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeE
Confidence 123333 489999999999999999999999988 5999999999999999999999999999998877654332
Q ss_pred -cceEEEe
Q 042035 147 -PAYRMYM 153 (158)
Q Consensus 147 -~~~~m~~ 153 (158)
+.+.|.+
T Consensus 153 ~d~~~~~~ 160 (162)
T PRK10140 153 VDAYYMAR 160 (162)
T ss_pred EEEEEEEe
Confidence 5556554
No 7
>PTZ00330 acetyltransferase; Provisional
Probab=99.89 E-value=1.2e-21 Score=120.55 Aligned_cols=128 Identities=17% Similarity=0.285 Sum_probs=93.8
Q ss_pred CCCCCcccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHh---cCC--ceEEEEEECCeEEEEEEEeecC---
Q 042035 1 MGSNGAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELK---KKN--SGLLYIQIHGQVVGYVMYAWPT--- 72 (158)
Q Consensus 1 M~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~vG~~~~~~~~--- 72 (158)
|+.++.||+++++ |++.+.++..............+..... ..+ ...+++..+|++||++.+....
T Consensus 3 ~~~~~~ir~~~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 76 (147)
T PTZ00330 3 MSGSLELRDLEEG------DLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFT 76 (147)
T ss_pred CcceEEEEEcccc------cHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccc
Confidence 7788999999999 7888877766554322111112222111 112 2334445689999999875321
Q ss_pred ---CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 73 ---SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 73 ---~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
...+++..++|+|+|||+|+|+.|++++++++++.|+..+.+. .|.+|++||+++||+....
T Consensus 77 ~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~---~n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 77 RGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILD---CTEDMVAFYKKLGFRACER 141 (147)
T ss_pred cCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEe---cChHHHHHHHHCCCEEece
Confidence 1246888999999999999999999999999999999888777 4789999999999998763
No 8
>PRK03624 putative acetyltransferase; Provisional
Probab=99.89 E-value=1.3e-21 Score=119.34 Aligned_cols=128 Identities=21% Similarity=0.318 Sum_probs=98.9
Q ss_pred CCcccccccCCccchhhHHHHHHHHhhhc-CCCh-hhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEE
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKKIF-PKHE-PLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL 81 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~ 81 (158)
.+.||+++++ |++.+.++....- ...+ .....+..........++++..++++||++.+.. ......+..+
T Consensus 2 ~~~ir~~~~~------d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~-~~~~~~i~~i 74 (140)
T PRK03624 2 AMEIRVFRQA------DFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGY-DGHRGWAYYL 74 (140)
T ss_pred ceEEEEcccc------cHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeec-cCCCceEEEE
Confidence 4789999999 7777777766541 1111 1112233333344456777778999999998763 3345677789
Q ss_pred EeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 82 AVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 82 ~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
+|+|+|||+|+|+.|++.+..++++.|++.+.+.+.+.|++++++|+|+||+..+..
T Consensus 75 ~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 75 AVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred EECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 999999999999999999999999999999999999999999999999999987643
No 9
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.89 E-value=5.2e-22 Score=125.79 Aligned_cols=145 Identities=28% Similarity=0.430 Sum_probs=115.3
Q ss_pred CCcccccccCCccchhhHH--HHHHHHhhhcCC-ChhhHHHHHHHHhcCCceEEEEEEC---C----eEEEEEEEeecCC
Q 042035 4 NGAVTELQRNSTNWTNVVD--EIVKMEKKIFPK-HEPLARSFDEELKKKNSGLLYIQIH---G----QVVGYVMYAWPTS 73 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~vG~~~~~~~~~ 73 (158)
.+.+++.... |+. .+..+....|.. .......+...+.+.+...+++..+ + +++|++.......
T Consensus 11 ~~~ir~~~~~------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~ 84 (177)
T COG0456 11 KVTIREAINK------DLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDG 84 (177)
T ss_pred ceehhhhhhc------ccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecC
Confidence 3567777777 666 778888888774 2333456666666666666766653 3 5999999853222
Q ss_pred -----CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCc-cEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCCc
Q 042035 74 -----LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTV-LRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADRP 147 (158)
Q Consensus 74 -----~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~-~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~ 147 (158)
..++|..++|+|+|||+|+|+.|++++++.+.+.+. ..+.+.|..+|.+|+.||+++||+..+....||.+..+
T Consensus 85 ~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~~~~~ 164 (177)
T COG0456 85 RPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYADGNG 164 (177)
T ss_pred CccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhccCCcc
Confidence 278999999999999999999999999999999886 89999999999999999999999999999999988764
Q ss_pred -ceEEEee
Q 042035 148 -AYRMYMD 154 (158)
Q Consensus 148 -~~~m~~~ 154 (158)
.+.|.+.
T Consensus 165 ~a~~~~~~ 172 (177)
T COG0456 165 DALLMLKM 172 (177)
T ss_pred hhHHHHHh
Confidence 6665543
No 10
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.89 E-value=2.2e-21 Score=124.27 Aligned_cols=129 Identities=19% Similarity=0.286 Sum_probs=97.1
Q ss_pred CCcccccccCCccchhhHHHHHHHHhhhcCC-----C----hhhHH---H-HHHHHhcC-CceEE-EEEECCeEEEEEEE
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKKIFPK-----H----EPLAR---S-FDEELKKK-NSGLL-YIQIHGQVVGYVMY 68 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~---~-~~~~~~~~-~~~~~-~~~~~~~~vG~~~~ 68 (158)
.+.||+++++ |++.+.++....+.. + ..... . +....... ....+ ++..+|++||++.+
T Consensus 43 ~~~lR~~~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l 116 (191)
T TIGR02382 43 DPGARVATET------DIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTL 116 (191)
T ss_pred CCcceeCChh------hHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEE
Confidence 4678999999 788888877665421 1 11111 1 11222122 22233 33458899999998
Q ss_pred eecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 69 AWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 69 ~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.......++++.++|+|+|||+|+|++|++++++++++.|+.++.+.|...|.+|++||+|+||+..++.
T Consensus 117 ~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 117 RELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred EecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 7544556789999999999999999999999999999999999999999999999999999999988754
No 11
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.88 E-value=2.5e-21 Score=114.64 Aligned_cols=134 Identities=20% Similarity=0.229 Sum_probs=99.1
Q ss_pred CCCcccccccCCccch-hhHHHHHHHHhhhcCCChhhHHHHHHH-HhcCCc-eEEEEEE---CCeEEEEEEEee-----c
Q 042035 3 SNGAVTELQRNSTNWT-NVVDEIVKMEKKIFPKHEPLARSFDEE-LKKKNS-GLLYIQI---HGQVVGYVMYAW-----P 71 (158)
Q Consensus 3 ~~~~ir~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~---~~~~vG~~~~~~-----~ 71 (158)
+++.||.++++|.+.. +.+.++..++.-..+.... ...+... +.++.. +++++.. +++++|++.+.. .
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~t-e~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~ 80 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEAT-EENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWL 80 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhc-hhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccccc
Confidence 4689999999953322 3444444444444333222 2233332 334333 3334433 889999999873 2
Q ss_pred CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 72 TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 72 ~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
.....++..++|.|+|||+|+|+.|++.+.+.|.+.|+.++.+.|...|.+|+.||++.|++....
T Consensus 81 ~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 81 GKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred ccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 346789999999999999999999999999999999999999999999999999999999998775
No 12
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.88 E-value=8.3e-21 Score=121.94 Aligned_cols=130 Identities=19% Similarity=0.324 Sum_probs=96.5
Q ss_pred CCcccccccCCccchhhHHHHHHHHhhhcCC---------ChhhHHHHHHHH----hcC-CceEEEEE-ECCeEEEEEEE
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKKIFPK---------HEPLARSFDEEL----KKK-NSGLLYIQ-IHGQVVGYVMY 68 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~----~~~-~~~~~~~~-~~~~~vG~~~~ 68 (158)
...||+++++ |++.+.++....+.. .......+..++ ... ....+++. .+|++||++.+
T Consensus 46 ~~~iR~a~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l 119 (194)
T PRK10975 46 TTGARVATET------DIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTL 119 (194)
T ss_pred CCCcccCCcc------cHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEE
Confidence 4678888888 677777766554321 111111222221 111 22344444 46899999998
Q ss_pred eecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 69 AWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 69 ~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
........++..++|+|+|||+|+|++|++.+++++++.|++.+.+.|...|+++++||+|+||+..++..
T Consensus 120 ~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 120 RELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred EecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 75445568899899999999999999999999999999999999999999999999999999999998664
No 13
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.87 E-value=5.5e-21 Score=118.74 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=94.7
Q ss_pred ccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEE-ECCeEEEEEEEee--cCCCeEEEEEEEe
Q 042035 7 VTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQ-IHGQVVGYVMYAW--PTSLSASITKLAV 83 (158)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~--~~~~~~~i~~~~v 83 (158)
||+++.+ |+..+.++..............+...........+++. .++++||++.+.. .......+..++|
T Consensus 1 IR~~~~~------D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V 74 (157)
T TIGR02406 1 FRPPRIE------DGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAV 74 (157)
T ss_pred CCCCccc------cHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEE
Confidence 5778888 88888888887653321111111222222234456666 4779999987543 2334578889999
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
+|+|||+|+|++|++.++++++..++..+.+.|.+.|.++++||+|+||+.....
T Consensus 75 ~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~ 129 (157)
T TIGR02406 75 DPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVHL 129 (157)
T ss_pred ChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCCe
Confidence 9999999999999999999999999999999999999999999999999876533
No 14
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.87 E-value=3.3e-20 Score=115.18 Aligned_cols=137 Identities=23% Similarity=0.399 Sum_probs=99.5
Q ss_pred ccccccCCccchhhHHHHHHHHhhh-----cCC-----ChhhHHHHHHHH-hcCCceEEEEEE-CCeEEEEEEEeecC--
Q 042035 7 VTELQRNSTNWTNVVDEIVKMEKKI-----FPK-----HEPLARSFDEEL-KKKNSGLLYIQI-HGQVVGYVMYAWPT-- 72 (158)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~vG~~~~~~~~-- 72 (158)
||+++++ |++.+..+..+. +.. .......+.... .......+++.. +|++||++.+....
T Consensus 1 IR~~~~~------D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~ 74 (155)
T PF13420_consen 1 IRPATEE------DLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPY 74 (155)
T ss_dssp EEE--GG------GHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSG
T ss_pred CCCCcHH------HHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeecc
Confidence 6888888 777777776532 211 111222333332 234566777776 99999999987532
Q ss_pred CCeEEEEEEEeccCccCCcHHHHHHHHHHHHH-HhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCCcceE
Q 042035 73 SLSASITKLAVKENYRGQGHGEALLEAAIKKC-RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADRPAYR 150 (158)
Q Consensus 73 ~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~-~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~ 150 (158)
...+.+. ++|.|++|++|+|+.|+..++++| .+.|++++.+.+.+.|.++++||+++||+..+..++++......+.
T Consensus 75 ~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~~~y~D 152 (155)
T PF13420_consen 75 NHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFINGKYYD 152 (155)
T ss_dssp TTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEETTEEEE
T ss_pred CCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEECCeEEE
Confidence 3455555 888899999999999999999999 8889999999999999999999999999999999887766554443
No 15
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.87 E-value=9.2e-20 Score=112.84 Aligned_cols=127 Identities=25% Similarity=0.362 Sum_probs=96.3
Q ss_pred ccccc-cCCccchhhHHHHHHHHhhh----c-C--CChhhHHHHHHHHh-cCCceEEEEEECCeEEEEEEEee------c
Q 042035 7 VTELQ-RNSTNWTNVVDEIVKMEKKI----F-P--KHEPLARSFDEELK-KKNSGLLYIQIHGQVVGYVMYAW------P 71 (158)
Q Consensus 7 ir~~~-~~~~~~~~~~~~~~~~~~~~----~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~------~ 71 (158)
||+++ .+ |++.+.++..+. | . ......+.+.+.+. ++....+++..+|+++|++.+.. .
T Consensus 1 ~R~a~~~~------Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~ 74 (152)
T PF13523_consen 1 LRPATTPD------DLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDA 74 (152)
T ss_dssp EEE---GG------GHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS--
T ss_pred CeeCccHH------HHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccC
Confidence 57778 77 888888887654 2 1 12223344555553 55667888999999999998864 1
Q ss_pred CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhC-CccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 72 TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 72 ~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
.+....+..++++|++||+|+|+.+++.+++.+.+. +++.+.+.+.+.|.+++++|+|+||+.+++..
T Consensus 75 ~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 75 DDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp -TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred CCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 345677888999999999999999999999999877 89999999999999999999999999999875
No 16
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.85 E-value=2.3e-20 Score=104.10 Aligned_cols=78 Identities=41% Similarity=0.619 Sum_probs=72.4
Q ss_pred EEECCeEEEEEEEeecC-----CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhC
Q 042035 56 IQIHGQVVGYVMYAWPT-----SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKF 130 (158)
Q Consensus 56 ~~~~~~~vG~~~~~~~~-----~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~ 130 (158)
++++|++||++.+.... ...+++..++|+|+|||+|+|+.|++++++++++.|+..+.+.+.+.|.++++||+++
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 46799999999988533 3689999999999999999999999999999999999999999999999999999999
Q ss_pred CCE
Q 042035 131 GFQ 133 (158)
Q Consensus 131 Gf~ 133 (158)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 17
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=2.7e-19 Score=110.09 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=110.2
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCC----------ChhhHHHHHHHHhcCCceEEEEEEC-CeEEEEEEEeecCC
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPK----------HEPLARSFDEELKKKNSGLLYIQIH-GQVVGYVMYAWPTS 73 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vG~~~~~~~~~ 73 (158)
+.||+.+.+ |++.+..+++..... .......+...........+++..+ |+++|++.+....+
T Consensus 2 ~~ir~~~~~------Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~ 75 (169)
T COG1247 2 MEIRPATAA------DLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRE 75 (169)
T ss_pred cEEecChHH------hHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccC
Confidence 678888888 899999988876422 2222222233333333455666554 99999999874322
Q ss_pred ----CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecccccc-C--C
Q 042035 74 ----LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSA-D--R 146 (158)
Q Consensus 74 ----~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~-~--~ 146 (158)
.......++|+|+.||+|+|++|++.++..+...|+..+...+...|.+++++++++||+..+..+..-.. + -
T Consensus 76 r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wl 155 (169)
T COG1247 76 RPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWL 155 (169)
T ss_pred ccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEE
Confidence 34445579999999999999999999999999999999999999999999999999999999988765222 2 2
Q ss_pred cceEEEeeccC
Q 042035 147 PAYRMYMDFDS 157 (158)
Q Consensus 147 ~~~~m~~~l~~ 157 (158)
|...|.+.|..
T Consensus 156 d~~~~~~~l~~ 166 (169)
T COG1247 156 DLVLMQLLLEE 166 (169)
T ss_pred eeeeeehhhcc
Confidence 66777777653
No 18
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.85 E-value=6.6e-19 Score=111.81 Aligned_cols=148 Identities=14% Similarity=0.179 Sum_probs=105.7
Q ss_pred CCCcccccccCCccchhhHHHHHHHHh--hh-------cCCC----hhhHHHHHHHH---hcCCceEEEEEECCeEEEEE
Q 042035 3 SNGAVTELQRNSTNWTNVVDEIVKMEK--KI-------FPKH----EPLARSFDEEL---KKKNSGLLYIQIHGQVVGYV 66 (158)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~vG~~ 66 (158)
..+.+|+++++ |+..+..+.. .. ++.. ......+.... .......+++..+|++||++
T Consensus 9 ~rl~Lr~~~~~------D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~ 82 (179)
T PRK10151 9 ESLELHAVDES------HVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVL 82 (179)
T ss_pred CcEEEEeCCHH------HHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEE
Confidence 45789999999 6666666542 11 2221 11122222221 11122356666799999999
Q ss_pred EEeec--CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccc
Q 042035 67 MYAWP--TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYS 143 (158)
Q Consensus 67 ~~~~~--~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~ 143 (158)
.+... ....+.++ +.++|+|||+|+|+++++.+++++++ .|++++.+.+.+.|.+|+++++|+||+..+..+....
T Consensus 83 ~l~~~~~~~~~~~ig-~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~ 161 (179)
T PRK10151 83 SFNRIEPLNKTAYIG-YWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEY 161 (179)
T ss_pred EEEeeccCCCceEEE-EEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceE
Confidence 88642 23456776 67899999999999999999999976 4899999999999999999999999999999876544
Q ss_pred cC---CcceEEEeeccC
Q 042035 144 AD---RPAYRMYMDFDS 157 (158)
Q Consensus 144 ~~---~~~~~m~~~l~~ 157 (158)
.+ .|.+.|.+.+.+
T Consensus 162 ~~g~~~D~~~~~~~~~~ 178 (179)
T PRK10151 162 LNGAYDDVNLYARIIDS 178 (179)
T ss_pred ECCEEEEEEEEEEeecC
Confidence 33 377788877654
No 19
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.85 E-value=1.2e-19 Score=109.12 Aligned_cols=118 Identities=25% Similarity=0.380 Sum_probs=89.8
Q ss_pred cccccccCCccchhhHHHHHHHHhhhcCCChhhH--HHHHHHHhcCCceEEEEEECCeEEEEEEEeec-----C--CCeE
Q 042035 6 AVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLA--RSFDEELKKKNSGLLYIQIHGQVVGYVMYAWP-----T--SLSA 76 (158)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-----~--~~~~ 76 (158)
+||+++++ |.+++.++...+|+...... ......... ...++++.++|++||++.+.+. + -..+
T Consensus 1 ~iR~~~~~------d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~ 73 (127)
T PF13527_consen 1 EIRPLTES------DFEQIIELFNEAFGDSESPPEIWEYFRNLYG-PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAA 73 (127)
T ss_dssp -EEEE-GG------GHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH-TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CceECCHH------HHHHHHHHHHHHCCCCCCchhhhhhhhcccC-cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEE
Confidence 47889999 99999999999998766543 122222222 4578889999999999988642 1 1468
Q ss_pred EEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEe
Q 042035 77 SITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVD 135 (158)
Q Consensus 77 ~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~ 135 (158)
++..++|+|+|||+|+|+.|++++++.+++.|+..+.+.. ....||+++||+.+
T Consensus 74 ~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 74 YIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp EEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE------SSHHHHHHTTEEEE
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-----CChhhhhcCCCEEC
Confidence 8999999999999999999999999999999998877764 23589999999863
No 20
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.84 E-value=1.6e-19 Score=111.55 Aligned_cols=125 Identities=15% Similarity=0.215 Sum_probs=87.9
Q ss_pred CCCcccccccCCccchhhHH-HHHHHHhhhcCCC-h---hhHHHHHHHHhcC-CceEEEEEE--CCeEEEEEEEeec---
Q 042035 3 SNGAVTELQRNSTNWTNVVD-EIVKMEKKIFPKH-E---PLARSFDEELKKK-NSGLLYIQI--HGQVVGYVMYAWP--- 71 (158)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~~~~--~~~~vG~~~~~~~--- 71 (158)
..+.||+++++ |.. .+..+........ . .....+....... ....+++.+ ++++||++.+...
T Consensus 5 ~~~~ir~~~~~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~ 78 (150)
T PLN02706 5 EKFKVRRLEIS------DKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKF 78 (150)
T ss_pred CceEEeEhhhc------ccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeec
Confidence 46789999998 444 3555544433221 1 1122222222222 233445555 6899999887421
Q ss_pred ---CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 72 ---TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 72 ---~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
....+++..++|+|+|||+|+|+.|++.++++|++.|++++.+.+.+.|. +||+|+||+..+
T Consensus 79 ~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF~~~g 143 (150)
T PLN02706 79 IRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGYVRKE 143 (150)
T ss_pred ccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcCEEeh
Confidence 12346777899999999999999999999999999999999999999885 599999999887
No 21
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.84 E-value=2.1e-19 Score=112.86 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=92.2
Q ss_pred CCCcccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEE-ECCeEEEEEEEeecCCCeEEEEEE
Q 042035 3 SNGAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQ-IHGQVVGYVMYAWPTSLSASITKL 81 (158)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~i~~~ 81 (158)
+.+.||+++++ |.+.+..+..................+. ....++++. .++++||++.+.....+.+.+..+
T Consensus 4 ~~i~iR~a~~~------D~~~i~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~~~~iiG~~~~~~~~~~~~~i~~l 76 (169)
T PRK07922 4 GAITVRRARTS------DVPAIKRLVDPYAQGRILLEKNLVTLYE-AVQEFWVAEHLDGEVVGCGALHVMWEDLAEIRTV 76 (169)
T ss_pred CCceeecCCHh------hHHHHHHHHHHHhhcCccccchHHHHHh-hcCcEEEEEecCCcEEEEEEEeecCCCceEEEEE
Confidence 46889999999 7777777766543221111111222222 234466777 799999999876545567788899
Q ss_pred EeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 82 AVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 82 ~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
+|+|+|||+|+|++|++++++++++.|+..+.+.+. +++||+|+||+..+.
T Consensus 77 ~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 77 AVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred EECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 999999999999999999999999999999987764 268999999999764
No 22
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=112.23 Aligned_cols=145 Identities=23% Similarity=0.308 Sum_probs=113.9
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEE-ECCeEEEEEEEeec-----CCCeEEE
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQ-IHGQVVGYVMYAWP-----TSLSASI 78 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~-----~~~~~~i 78 (158)
+.||.++++ |+-..-...-.+.|...... .+.......+...+++. .+|++||++...-. .+..++|
T Consensus 2 m~iR~ar~~------DL~~mQ~~Nl~~lpENyqmk-yylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhI 74 (193)
T KOG3235|consen 2 MNIRRARPD------DLLEMQHCNLLNLPENYQMK-YYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHI 74 (193)
T ss_pred cccccCCHH------HHHHhhhcccccCcHHHhHH-HHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCee
Confidence 578888877 55555444444444444333 33334444566677777 48999999987621 2357899
Q ss_pred EEEEeccCccCCcHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHH-hCCCEEeeeeccccccCCcceEEEeecc
Q 042035 79 TKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYK-KFGFQVDALIQGYYSADRPAYRMYMDFD 156 (158)
Q Consensus 79 ~~~~v~~~~r~~Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~-~~Gf~~~~~~~~~~~~~~~~~~m~~~l~ 156 (158)
..++|...||+.|||++|+......+.+ .+...|.+.|..+|.+|+.+|+ .+||++.+.-+.||.++++++.|+++|+
T Consensus 75 tSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYadGedAyaM~~~L~ 154 (193)
T KOG3235|consen 75 TSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADGEDAYAMRKDLS 154 (193)
T ss_pred EEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecccccccccHHHHHHHHHHH
Confidence 9999999999999999999997777654 4889999999999999999999 8999999999999999999999998875
No 23
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.84 E-value=8.5e-19 Score=111.96 Aligned_cols=143 Identities=17% Similarity=0.310 Sum_probs=103.2
Q ss_pred CCcccccccCCccchhhHHHHHHHHhhh-----cC-CCh-h---hHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecC-
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKKI-----FP-KHE-P---LARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPT- 72 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~- 72 (158)
++.+|+++++ |+..+.++.... +. .+. . ....+...........+++..+|++||++.+....
T Consensus 6 ~l~lR~~~~~------D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~ 79 (186)
T PRK15130 6 SVKLRPLERE------DLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINH 79 (186)
T ss_pred eeEEecCCHH------HHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecC
Confidence 5789999998 677666664432 11 111 1 11122233334455667777899999999886432
Q ss_pred -CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCC---c
Q 042035 73 -SLSASITKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADR---P 147 (158)
Q Consensus 73 -~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~---~ 147 (158)
...+.+ .++|+|+|||+|+|+.+++.+++++.+ .|+.++.+.+...|.+|+++|+++||+..+..+..+..+. |
T Consensus 80 ~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d 158 (186)
T PRK15130 80 VHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRN 158 (186)
T ss_pred CCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEE
Confidence 234555 489999999999999999999999975 5999999999999999999999999999998876654332 4
Q ss_pred ceEEEe
Q 042035 148 AYRMYM 153 (158)
Q Consensus 148 ~~~m~~ 153 (158)
.+.|.+
T Consensus 159 ~~~~~~ 164 (186)
T PRK15130 159 TIRMCI 164 (186)
T ss_pred EEEEEe
Confidence 455543
No 24
>PRK10314 putative acyltransferase; Provisional
Probab=99.83 E-value=5.2e-20 Score=113.67 Aligned_cols=132 Identities=16% Similarity=0.228 Sum_probs=97.5
Q ss_pred hHHHHHHHHhhhcCCChhhHH-HHHHHHhcCCceEEEEEECCeEEEEEEEeecCC--CeEEEEEEEeccCccCCcHHHHH
Q 042035 20 VVDEIVKMEKKIFPKHEPLAR-SFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTS--LSASITKLAVKENYRGQGHGEAL 96 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~~~~i~~~~v~~~~r~~Gig~~l 96 (158)
.+..+..+..+.|-.++.... .+...-.......+++.+++++||++.+..... ...+++.++|+|+|||+|+|+.|
T Consensus 16 ~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~L 95 (153)
T PRK10314 16 QLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQL 95 (153)
T ss_pred HHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHH
Confidence 677888888888865443321 111110012355677788999999999875322 35789999999999999999999
Q ss_pred HHHHHHHHHhC-CccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCCcceEEEeecc
Q 042035 97 LEAAIKKCRTR-TVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADRPAYRMYMDFD 156 (158)
Q Consensus 97 ~~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~ 156 (158)
+++++++++.. +...+.+. .+..++.||+++||+..+. .|...+-+.+.|.+.+.
T Consensus 96 m~~~~~~~~~~~~~~~i~L~---a~~~a~~fY~k~GF~~~g~--~f~~~Gi~h~~M~~~~~ 151 (153)
T PRK10314 96 MSKTLESCTRHWPDKPVYLG---AQAHLQNFYQSFGFIPVTE--VYEEDGIPHIGMAREVI 151 (153)
T ss_pred HHHHHHHHHHHCCCCcEEEe---hHHHHHHHHHHCCCEECCC--ccccCCCCcHhhhhhhh
Confidence 99999999775 67778877 4567889999999999884 35555667888877653
No 25
>PHA00673 acetyltransferase domain containing protein
Probab=99.83 E-value=7.2e-19 Score=106.76 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=93.2
Q ss_pred hhHHHHHHHHhhhc-C-------CChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecC------CCeEEEEEEEec
Q 042035 19 NVVDEIVKMEKKIF-P-------KHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPT------SLSASITKLAVK 84 (158)
Q Consensus 19 ~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~------~~~~~i~~~~v~ 84 (158)
.|++.+.+|..+.- . .+.+....+.....+++..++++.++|++||++.+...+ ...+.|..++|+
T Consensus 15 ~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~ 94 (154)
T PHA00673 15 ADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVA 94 (154)
T ss_pred hhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEC
Confidence 38888888876521 0 112233446666677788888888899999999886422 246789999999
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
|++||+|||+.|+++++++|+++||..+++...++ ...+.||.++|++...+
T Consensus 95 ~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~-~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 95 AAHRPGGAGMALLRATEALARDLGATGLYVSGPTE-GRLVQLLPAAGYRETNR 146 (154)
T ss_pred hhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCC-ccchHHHHhCCchhhch
Confidence 99999999999999999999999999999985553 56899999999998763
No 26
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.83 E-value=3.1e-19 Score=105.75 Aligned_cols=85 Identities=31% Similarity=0.557 Sum_probs=69.7
Q ss_pred HHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCC
Q 042035 40 RSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPF 119 (158)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~ 119 (158)
+.+...+.+....++++.++|++||++.+. +...|..++|+|+|||+|+|++|++.++++++. |+..+.+. .
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~---~ 104 (117)
T PF13673_consen 33 EDLEEYLEEGSHTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE---A 104 (117)
T ss_dssp HHHHHHHCTCCCEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE---C
T ss_pred HHHHHHHHhcCCEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE---e
Confidence 445555555567889999999999999986 233488899999999999999999999999976 88877777 8
Q ss_pred ChhhHHHHHhCCC
Q 042035 120 RTPAVNLYKKFGF 132 (158)
Q Consensus 120 n~~~~~~y~~~Gf 132 (158)
|..+.+||+++||
T Consensus 105 ~~~a~~~y~~~GF 117 (117)
T PF13673_consen 105 NERARRFYRKLGF 117 (117)
T ss_dssp -HHHHHHHHHTT-
T ss_pred CHHHHHHHHhCCC
Confidence 9999999999998
No 27
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.83 E-value=1.5e-18 Score=111.49 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=99.8
Q ss_pred CCcccccccCCccchhhHHHHHHHHhh--h----cCCChh--------hH---HHHHHHHhcCCceEEEEEE--CCeEEE
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKK--I----FPKHEP--------LA---RSFDEELKKKNSGLLYIQI--HGQVVG 64 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~--~~~~vG 64 (158)
++.||+++++ |.+.+.++... . |.+... .. ..+...........+++.. ++++||
T Consensus 17 rl~LR~~~~~------Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG 90 (194)
T PRK10809 17 RLVVRLVHER------DAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIG 90 (194)
T ss_pred cEEEEeCCHH------HHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEE
Confidence 4779999999 67666666543 1 111110 00 1111222233333455543 679999
Q ss_pred EEEEeecCC---CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 65 YVMYAWPTS---LSASITKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 65 ~~~~~~~~~---~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
.+.+..... ..++++ +.|+|+|||+|+|+.+++.++++++. .|++++.+.|.+.|.+|+++|+|+||+..+..+.
T Consensus 91 ~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~~ 169 (194)
T PRK10809 91 VANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAKD 169 (194)
T ss_pred EEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeecc
Confidence 999864322 234554 78999999999999999999999987 5999999999999999999999999999998877
Q ss_pred ccccC---CcceEEEe
Q 042035 141 YYSAD---RPAYRMYM 153 (158)
Q Consensus 141 ~~~~~---~~~~~m~~ 153 (158)
++..+ .|.+.|.+
T Consensus 170 ~~~~~g~~~d~~~~~~ 185 (194)
T PRK10809 170 YLLIDGQWRDHVLTAL 185 (194)
T ss_pred ccccCCeEEEEEEeee
Confidence 65433 25556654
No 28
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.83 E-value=8.6e-19 Score=127.38 Aligned_cols=129 Identities=22% Similarity=0.196 Sum_probs=100.5
Q ss_pred CCccccc-ccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEE--CCeEEEEEEEee------cCCC
Q 042035 4 NGAVTEL-QRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQI--HGQVVGYVMYAW------PTSL 74 (158)
Q Consensus 4 ~~~ir~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~------~~~~ 74 (158)
.+.||++ +++ |++.+.+++......+... ..+..........++++.+ +|++||++.... ....
T Consensus 82 g~~IR~~~~~~------D~~~I~~L~~~~~~~p~~~-~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~ 154 (547)
T TIGR03103 82 GFTVRRLRGPA------DVDAINRLYAARGMVPVRV-DFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEH 154 (547)
T ss_pred CcEEEeCCChh------HHHHHHHHHHhcCCCCCCH-HHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCC
Confidence 4788887 456 8899999988765433322 2233344444556677765 699999997531 1223
Q ss_pred eEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
..++..++|+|+|||+|+|+.|++++++++++.|+..+.+.|...|.++++||+|+||+....+.
T Consensus 155 ~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~ 219 (547)
T TIGR03103 155 GSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFA 219 (547)
T ss_pred CeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEE
Confidence 46788999999999999999999999999999999999999999999999999999999887554
No 29
>PRK07757 acetyltransferase; Provisional
Probab=99.82 E-value=7.6e-19 Score=108.74 Aligned_cols=118 Identities=24% Similarity=0.267 Sum_probs=89.3
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCCCh---hhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEE
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPKHE---PLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL 81 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~ 81 (158)
+.||+++++ |++.+.++.....+... ...+.+.. ....++++..+|++||++.+........++..+
T Consensus 2 ~~ir~~~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~lvG~~~l~~~~~~~~~i~~v 71 (152)
T PRK07757 2 MEIRKARLS------DVKAIHALINVYAKKGLMLPRSLDELYE----NIRDFYVAEEEGEIVGCCALHILWEDLAEIRSL 71 (152)
T ss_pred ceEeeCCcc------cHHHHHHHHHHHHhcCCccCCCHHHHHh----ccCcEEEEEECCEEEEEEEEEeccCCceEEEEE
Confidence 578999988 67777777654332111 11122222 223467777899999999998656667789899
Q ss_pred EeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 82 AVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 82 ~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
+|+|+|||+|+|+.|++.+++.+++.|+..+.+.+. +.+||+|+||+..+.
T Consensus 72 ~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 72 AVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 999999999999999999999999889988876653 358999999999875
No 30
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.81 E-value=4.5e-18 Score=105.66 Aligned_cols=131 Identities=20% Similarity=0.231 Sum_probs=96.2
Q ss_pred cccccccCCccchhhHHHHHHHHhhh----c--C---CChhhHHHHHHHHh-cCCceEEEEEECCeEEEEEEEeecC--C
Q 042035 6 AVTELQRNSTNWTNVVDEIVKMEKKI----F--P---KHEPLARSFDEELK-KKNSGLLYIQIHGQVVGYVMYAWPT--S 73 (158)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~----~--~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~~~--~ 73 (158)
.+|+++++ |++.+.++.... | + .+......+..... +.....+++..+|++||++.+.... .
T Consensus 2 ~lr~~~~~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~ 75 (156)
T TIGR03585 2 NFTPLNSE------ELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVH 75 (156)
T ss_pred CcccCCHH------HHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhh
Confidence 47888888 677666654321 1 1 11122223333332 3344567777899999999997533 3
Q ss_pred CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHHhCCCEEeeeecccccc
Q 042035 74 LSASITKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSA 144 (158)
Q Consensus 74 ~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~ 144 (158)
....++ +++.|.+| +|+|++++..+++++++ .+++.+.+.|.+.|.++++||+|+||+..+..+.+...
T Consensus 76 ~~~~~g-~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~ 145 (156)
T TIGR03585 76 KSAFWG-IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFK 145 (156)
T ss_pred CeEEEE-EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeE
Confidence 455665 45899999 99999999999999975 59999999999999999999999999999988876444
No 31
>PRK10514 putative acetyltransferase; Provisional
Probab=99.80 E-value=5.8e-18 Score=103.97 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=82.7
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcC----C-ChhhHHHHHH---HHhcCCceEEEEE-ECCeEEEEEEEeecCCCe
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFP----K-HEPLARSFDE---ELKKKNSGLLYIQ-IHGQVVGYVMYAWPTSLS 75 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~ 75 (158)
+.||+++++ |.+.+..+..+.+. . .......+.. .+.. ....+++. .++++||++.+..
T Consensus 2 ~~ir~~~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iG~~~~~~----- 69 (145)
T PRK10514 2 ISIRRSRHE------EGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLP-EAPLWVAVDERDQPVGFMLLSG----- 69 (145)
T ss_pred ceeeecchh------hHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhc-cCceEEEEecCCcEEEEEEEec-----
Confidence 568999988 66666666554211 0 0111112221 1222 23344444 5899999998752
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
..+..++|+|+|||+|+|++|++.+++.+ ..+.+.+...|.++++||+|+||+..+....
T Consensus 70 ~~~~~~~v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~ 129 (145)
T PRK10514 70 GHMEALFVDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRSEV 129 (145)
T ss_pred CcEeEEEECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEeccccc
Confidence 23557999999999999999999988864 3567888899999999999999999987653
No 32
>PHA01807 hypothetical protein
Probab=99.80 E-value=9.1e-18 Score=103.01 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=72.4
Q ss_pred HHHHHHhcCCceEEEEEECCeEEEEEEEeecCCC-eEE---EEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEE
Q 042035 41 SFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSL-SAS---ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHV 116 (158)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~---i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~ 116 (158)
.+.....+.....+++.++|++||++.+...... ... +..++|+|+|||+|+|+.|++.++++|++.|+..+.+++
T Consensus 43 ~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v 122 (153)
T PHA01807 43 RILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSH 122 (153)
T ss_pred HHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3333344455556777889999999998643322 223 344799999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHhC
Q 042035 117 DPFRTPAVNLYKKF 130 (158)
Q Consensus 117 ~~~n~~~~~~y~~~ 130 (158)
...|.+|++||++.
T Consensus 123 ~~~n~~a~~~y~~~ 136 (153)
T PHA01807 123 REGEGRYTIHYRRV 136 (153)
T ss_pred cCCcHHHHHHHHhc
Confidence 99999999999974
No 33
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.79 E-value=4.5e-18 Score=116.82 Aligned_cols=124 Identities=11% Similarity=0.198 Sum_probs=97.1
Q ss_pred CCCcccccccCCccchhhHHHHHHHHhhh--cCC--ChhhHHHHHHHHhcCCceEEEEE--E---CCeEEEEEEEeecCC
Q 042035 3 SNGAVTELQRNSTNWTNVVDEIVKMEKKI--FPK--HEPLARSFDEELKKKNSGLLYIQ--I---HGQVVGYVMYAWPTS 73 (158)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~vG~~~~~~~~~ 73 (158)
|.++||+++++ |++.+.++.... |.. .......+...+... ..+++. + ++.+||++.+. ...
T Consensus 185 m~~~Ir~a~~~------Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~--~~~~~~~~d~~gd~givG~~~~~-~~~ 255 (320)
T TIGR01686 185 LSLNISKNDEQ------NVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE--EIVTVSMSDRFGDSGIIGIFVFE-KKE 255 (320)
T ss_pred CEEEEEECChh------hhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC--CEEEEEEEecCCCCceEEEEEEE-ecC
Confidence 56789999999 888888887766 432 122234455555443 333333 2 56899999886 455
Q ss_pred CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEc--CCChhhHHHHHhCCCEEe
Q 042035 74 LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVD--PFRTPAVNLYKKFGFQVD 135 (158)
Q Consensus 74 ~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~--~~n~~~~~~y~~~Gf~~~ 135 (158)
..++|..++|+|++||+|+|+.|++++++.+++.|+..+.+.+. ..|.+|+.||+++||+..
T Consensus 256 ~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 256 GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 67889999999999999999999999999999999999999875 589999999999999854
No 34
>PLN02825 amino-acid N-acetyltransferase
Probab=99.79 E-value=5.3e-18 Score=121.29 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=100.4
Q ss_pred cccccccCCccchhhHHHHHHHHhhhcCCCh---hhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeec-CCCeEEEEEE
Q 042035 6 AVTELQRNSTNWTNVVDEIVKMEKKIFPKHE---PLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWP-TSLSASITKL 81 (158)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-~~~~~~i~~~ 81 (158)
.||+++++ |+..+..+..+...... ...+.+.. ....++++..+|++|||+.+.+. ....+++..+
T Consensus 369 ~IR~At~e------Di~~I~~Li~~lee~g~lv~rs~e~le~----ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~l 438 (515)
T PLN02825 369 GTRMARVE------DLAGIRQIIRPLEESGILVRRTDEELLR----ALDSFVVVEREGSIIACAALFPFFEEKCGEVAAI 438 (515)
T ss_pred hheeCCHH------HHHHHHHHHHHHHHcCCCcCCCHHHHHh----cCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEE
Confidence 47888888 78888887765432211 11222222 23457778889999999987643 3467899999
Q ss_pred EeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee------ccccccCCcceEEEeec
Q 042035 82 AVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI------QGYYSADRPAYRMYMDF 155 (158)
Q Consensus 82 ~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~------~~~~~~~~~~~~m~~~l 155 (158)
+|+|+|||+|+|++|+++++++|+++|+.++.+.+ +.+.+||+++||...+.. +..|......-++.|.|
T Consensus 439 aV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt----t~a~~fY~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k~l 514 (515)
T PLN02825 439 AVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT----TRTADWFVRRGFSECSIESLPEARRKRINLSRGSKYYMKKL 514 (515)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe----CcHHHHHHHCCCEEeChhhCCHHHHhhcCccCCcEEEEEec
Confidence 99999999999999999999999999999999876 346899999999998743 22344555556666654
No 35
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.79 E-value=5.1e-18 Score=120.67 Aligned_cols=122 Identities=19% Similarity=0.273 Sum_probs=89.2
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeec-CCCeEEEEEEEe
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWP-TSLSASITKLAV 83 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-~~~~~~i~~~~v 83 (158)
+.||+++++ |++.+..+..+........ ......+......++++..++++||++.+... ....+++..++|
T Consensus 283 ~~IR~at~~------Dl~~I~~L~~~~~~~~~~~-~~~~~~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V 355 (429)
T TIGR01890 283 ESIRQATID------DIGGIAALIRPLEEQGILV-RRSREYLEREISEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAV 355 (429)
T ss_pred hheEECCHH------HHHHHHHHHHHHHHcCCch-hhhHHHHHhhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEE
Confidence 468888887 7888877765332211110 11122222233346677789999999988753 345688999999
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
+|+|||+|+|++|+++++++|+++|+..+.+.+ .| +.+||+++||+..+.
T Consensus 356 ~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~--~~--a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 356 SPEYQDGGRGERLLAHIEDRARQMGISRLFVLT--TR--TGHWFRERGFQTASV 405 (429)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEee--cc--hHHHHHHCCCEECCh
Confidence 999999999999999999999999999876543 23 579999999999986
No 36
>PRK10562 putative acetyltransferase; Provisional
Probab=99.79 E-value=2.7e-17 Score=101.05 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=91.9
Q ss_pred ccccccCCccchhhHHHHHHHHhhhc--CCCh---hh---H-HHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEE
Q 042035 7 VTELQRNSTNWTNVVDEIVKMEKKIF--PKHE---PL---A-RSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSAS 77 (158)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~---~-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 77 (158)
||+++++ |++.+.++..... +.+. .. . ........ .....+++..+|++||++.+... ..
T Consensus 2 ir~~~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~iG~~~~~~~----~~ 70 (145)
T PRK10562 2 IREYQPS------DLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYL-PAAQTWVWEEDGKLLGFVSVLEG----RF 70 (145)
T ss_pred cccccch------hhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhc-CcccEEEEEECCEEEEEEEEeec----cE
Confidence 7888888 7878877765432 1111 10 0 11111122 33445667778999999988532 35
Q ss_pred EEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecccccc-CCcceEEEeec
Q 042035 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSA-DRPAYRMYMDF 155 (158)
Q Consensus 78 i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~-~~~~~~m~~~l 155 (158)
++.++|+|+|||+|+|+.|++.+++. ...+.+.+...|.++++||+|+||+..+. .++.+ +.+...|+..-
T Consensus 71 i~~~~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~--~~~~~~~~~~~~~~~~~ 142 (145)
T PRK10562 71 VGALFVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDS--AWQEETQHPTWIMSWQA 142 (145)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEccc--cccCCCCCEEEEEEecC
Confidence 77899999999999999999988774 45678888899999999999999999985 34443 45777777653
No 37
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.78 E-value=4.8e-18 Score=121.26 Aligned_cols=135 Identities=19% Similarity=0.279 Sum_probs=96.4
Q ss_pred CcccccccCCccchhhHHHHHHHHhhh----cCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeec-CCCeEEEE
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKI----FPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWP-TSLSASIT 79 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-~~~~~~i~ 79 (158)
+.||+++++ |++.+.++..+. +...+. .. .+......++++.+++++||++.+... ....+++.
T Consensus 295 ~~IR~at~~------D~~~I~~L~~~~~~~~~~~~~~-~~----~l~~~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~ 363 (441)
T PRK05279 295 EQLRRATID------DVGGILELIRPLEEQGILVRRS-RE----QLEREIDKFTVIERDGLIIGCAALYPFPEEKMGEMA 363 (441)
T ss_pred HHeEeCCHH------HHHHHHHHHHHHHHcCCccccC-HH----HHhcccCcEEEEEECCEEEEEEEEEEcCCCCeEEEE
Confidence 568888888 777777765432 211111 11 222223346777889999999987643 33568899
Q ss_pred EEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee------eccccccCCcceEEEe
Q 042035 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL------IQGYYSADRPAYRMYM 153 (158)
Q Consensus 80 ~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~------~~~~~~~~~~~~~m~~ 153 (158)
.++|+|+|||+|+|++|+++++++|++.|+..+.+.+ ..++.||+++||+..+. ...+|..+...-++.|
T Consensus 364 ~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~----~~a~~fY~k~GF~~~g~~~~~~~~~~~y~~~r~~~~~~~ 439 (441)
T PRK05279 364 CLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT----TRTAHWFLERGFVPVDVDDLPEAKRQLYNYQRRSKVLVK 439 (441)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec----chHHHHHHHCcCEECChhhCcHHHHHhhCcccCceeeee
Confidence 9999999999999999999999999999999887643 46899999999999986 3334544444444444
Q ss_pred e
Q 042035 154 D 154 (158)
Q Consensus 154 ~ 154 (158)
+
T Consensus 440 ~ 440 (441)
T PRK05279 440 D 440 (441)
T ss_pred c
Confidence 3
No 38
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.78 E-value=9.1e-18 Score=114.24 Aligned_cols=87 Identities=23% Similarity=0.348 Sum_probs=73.6
Q ss_pred eEEEEEE--CCeEEEEEEEeecC--CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHH
Q 042035 52 GLLYIQI--HGQVVGYVMYAWPT--SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLY 127 (158)
Q Consensus 52 ~~~~~~~--~~~~vG~~~~~~~~--~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y 127 (158)
..+++.+ +|++||++.+.... ....++..+.|+|+|||+|+|+.|++++++++++.|+..+.+.+.+.|.++++||
T Consensus 199 ~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 199 GLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred ceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 4566666 68999997655322 2346677789999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEeeee
Q 042035 128 KKFGFQVDALI 138 (158)
Q Consensus 128 ~~~Gf~~~~~~ 138 (158)
+|+||+..+..
T Consensus 279 ~k~GF~~~~~~ 289 (292)
T TIGR03448 279 EKLGFTVAEVD 289 (292)
T ss_pred HHcCCEEcccc
Confidence 99999987754
No 39
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.78 E-value=1.8e-17 Score=91.51 Aligned_cols=78 Identities=31% Similarity=0.556 Sum_probs=65.4
Q ss_pred CceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHh
Q 042035 50 NSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKK 129 (158)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~ 129 (158)
...++++.+++++||++.+. ...+...+..++|+|+|||+|+|+.|++.+.+.+.. ..+.+.+ ++.+..||++
T Consensus 2 ~~~~~~~~~~~~ivG~~~~~-~~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~---~~~~~~fY~~ 74 (79)
T PF13508_consen 2 KERFFVAEDDGEIVGFIRLW-PNEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFT---NPAAIKFYEK 74 (79)
T ss_dssp TEEEEEEEETTEEEEEEEEE-ETTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEE---EHHHHHHHHH
T ss_pred ccEEEEEEECCEEEEEEEEE-EcCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEE---cHHHHHHHHH
Confidence 35678888999999999997 455589999999999999999999999999888844 4556664 6789999999
Q ss_pred CCCEE
Q 042035 130 FGFQV 134 (158)
Q Consensus 130 ~Gf~~ 134 (158)
+||++
T Consensus 75 ~GF~~ 79 (79)
T PF13508_consen 75 LGFEE 79 (79)
T ss_dssp TTEEE
T ss_pred CcCCC
Confidence 99985
No 40
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.77 E-value=2.2e-17 Score=99.05 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=94.8
Q ss_pred cccccccCCccchhhHHHHHHHHhhhcCCCh---hhHHHHHHHHhcCCceEEEEEECCeEEEEEEEe-ecCCCeEEEEEE
Q 042035 6 AVTELQRNSTNWTNVVDEIVKMEKKIFPKHE---PLARSFDEELKKKNSGLLYIQIHGQVVGYVMYA-WPTSLSASITKL 81 (158)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~-~~~~~~~~i~~~ 81 (158)
.||.++.. |+..+.++......... ...+.+... -..++++..+|.+||++.+. ....+.+++..+
T Consensus 2 ~iR~A~~~------Di~~I~~Li~~~~~~gil~~rs~~~le~~----i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~l 71 (153)
T COG1246 2 QIRKARIS------DIPAILELIRPLELQGILLRRSREQLEEE----IDDFTIIERDGKVIGCAALHPVLEEDLGELRSL 71 (153)
T ss_pred ceeecccc------chHHHHHHHHHHhhccccchhhHHHHHHH----HhhheeeeeCCcEEEEEeecccCccCeeeEEEE
Confidence 57888888 88888888876644321 112222322 33477888899999999998 467889999999
Q ss_pred EeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 82 AVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 82 ~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
+|+|++||+|+|..|++.++..|++.|++++.+-+. .+..||+++||+....
T Consensus 72 aV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 72 AVHPDYRGSGRGERLLERLLADARELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred EECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 999999999999999999999999999999998864 4568999999998874
No 41
>PRK09831 putative acyltransferase; Provisional
Probab=99.77 E-value=1.2e-17 Score=102.79 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=86.1
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCC------ChhhHH--------HHHHHHhcCCceEEEEEECCeEEEEEEEee
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPK------HEPLAR--------SFDEELKKKNSGLLYIQIHGQVVGYVMYAW 70 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 70 (158)
++||+++++ |+..+.++....+.. +..... .+...+. ...++++..+|++||++.+..
T Consensus 1 ~~ir~a~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~iiG~~~~~~ 72 (147)
T PRK09831 1 IQIRNYQPG------DFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLA--KSQVRVAVINAQPVGFITCIE 72 (147)
T ss_pred CccccCChh------hHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHh--cCceEEEEECCEEEEEEEehh
Confidence 468889888 666666665544321 111001 1122222 345677788999999988752
Q ss_pred cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCC--cc
Q 042035 71 PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADR--PA 148 (158)
Q Consensus 71 ~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~--~~ 148 (158)
.++..++|+|+|||+|+|+.|++++++.+.. + .+. .|..+++||+++||+..+..+.-. .+. +.
T Consensus 73 -----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l--~v~-~~~~a~~~Y~k~Gf~~~g~~~~~~-~g~~~~~ 138 (147)
T PRK09831 73 -----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----L--TVD-ASITAKPFFERYGFQTVKQQRVEC-RGEWFIN 138 (147)
T ss_pred -----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----e--Eee-cchhhHHHHHHCCCEEeeccceEE-CCEEEEe
Confidence 4577899999999999999999999998765 2 332 357899999999999999875322 222 45
Q ss_pred eEEEe
Q 042035 149 YRMYM 153 (158)
Q Consensus 149 ~~m~~ 153 (158)
+.|.+
T Consensus 139 ~~m~~ 143 (147)
T PRK09831 139 FYMRY 143 (147)
T ss_pred eEEEe
Confidence 55554
No 42
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.77 E-value=1.3e-17 Score=123.03 Aligned_cols=123 Identities=24% Similarity=0.266 Sum_probs=91.2
Q ss_pred CCcccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEe
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAV 83 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v 83 (158)
.++||+++++ |+..+..+.............. ...+......++++..+|++||++.+.......+++..++|
T Consensus 463 gm~IR~a~~~------D~~~I~~L~~~~~~~~~~~~~~-~~~l~~~~~~~~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V 535 (614)
T PRK12308 463 GVKVRPARLT------DIDAIEGMVAYWAGLGENLPRS-RNELVRDIGSFAVAEHHGEVTGCASLYIYDSGLAEIRSLGV 535 (614)
T ss_pred CCEEEECCHH------HHHHHHHHHHHHHhhhcccccC-HHHHhcccCcEEEEEECCEEEEEEEEEEcCCCeEEEEEEEE
Confidence 4789999998 6777766655332111110001 11122233456778889999999998755556688999999
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
+|+|||+|||+.|++.+++++++.|+..+.+.+ .+..||+|+||+..+..
T Consensus 536 ~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~-----~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 536 EAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT-----RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee-----CcHHHHHHCCCEECCcc
Confidence 999999999999999999999999999988764 24689999999998854
No 43
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.76 E-value=9.1e-17 Score=99.18 Aligned_cols=143 Identities=20% Similarity=0.260 Sum_probs=107.6
Q ss_pred CCCcccccccCCccchhhHHHHHHHHhhhcCCChh--hHHHHHHHHhcCCceEEEEEECCeEEEEEEEee---c--CCCe
Q 042035 3 SNGAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEP--LARSFDEELKKKNSGLLYIQIHGQVVGYVMYAW---P--TSLS 75 (158)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~---~--~~~~ 75 (158)
+.+.||..++. |...+.++..+.|.+... ..+.+.+.........+++.++|++||.+.+.+ . ....
T Consensus 2 ~~~~ir~e~~~------d~~~i~~~~~~aF~~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~ 75 (171)
T COG3153 2 MMMLIRTETPA------DIPAIEALTREAFGPGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGW 75 (171)
T ss_pred CccEEEecChh------hHHHHHHHHHHHhhcchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccce
Confidence 34889999999 899999999999973322 222222222223456788888999999999874 2 2346
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecccccc-CCcceEEEee
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSA-DRPAYRMYMD 154 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~-~~~~~~m~~~ 154 (158)
..++.+.|+|++||||||++|++..++.++..|+..+.+.-++ .+|.++||+......-+... ..+...|.+.
T Consensus 76 ~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp------~YY~rfGF~~~~~~~l~~p~~~~~~~fl~~~ 149 (171)
T COG3153 76 LGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDP------TYYSRFGFEPAAGAKLYAPGPVPDERFLALE 149 (171)
T ss_pred EEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCc------ccccccCcEEccccccccCCCCCCceEEEEE
Confidence 6788999999999999999999999999999999988887444 58999999998866443321 3466777777
Q ss_pred ccC
Q 042035 155 FDS 157 (158)
Q Consensus 155 l~~ 157 (158)
|..
T Consensus 150 L~~ 152 (171)
T COG3153 150 LGD 152 (171)
T ss_pred ccC
Confidence 654
No 44
>PRK01346 hypothetical protein; Provisional
Probab=99.76 E-value=4.1e-17 Score=115.83 Aligned_cols=127 Identities=15% Similarity=0.105 Sum_probs=97.4
Q ss_pred CCCCCcccccccCCccchhhHHHHHHHHhhhcCCChh--hHHHHHHHHhcCCceEEEEEECCeEEEEEEEeec------C
Q 042035 1 MGSNGAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEP--LARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWP------T 72 (158)
Q Consensus 1 M~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~------~ 72 (158)
|.+.++||+++++ |++++.++....|..... ....+.... .....+++.++|++||++.+... .
T Consensus 3 ~~~~~~iR~~~~~------D~~~i~~L~~~~f~~~~~~~~~~~~~~~~--~~~~~~va~~~~~lvg~~~~~~~~~~~~~~ 74 (411)
T PRK01346 3 RDMAITIRTATEE------DWPAWFRAAATGFGDSPSDEELEAWRALV--EPDRTLGAFDGDEVVGTAGAFDLRLTVPGG 74 (411)
T ss_pred CCCCceeecCCHH------HHHHHHHHHHHHcCCCCChHHHHHHHHhc--CcCCeEEEEECCEEEEEEEEeccccccCCC
Confidence 6678999999988 899999998888875321 122222222 23346777889999999987631 1
Q ss_pred --CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 73 --SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 73 --~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
....++..++|+|+|||+|+|+.|++++++.+++.|+..+.+.+.. ..||+++||........
T Consensus 75 ~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~ 139 (411)
T PRK01346 75 AVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE-----GGIYGRFGYGPATYSQS 139 (411)
T ss_pred CccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHhhCCCeeccceEE
Confidence 1468899999999999999999999999999999999877777433 36999999998875543
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.76 E-value=6.9e-17 Score=109.93 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=83.4
Q ss_pred hHHHHHHHHhhhcCC--ChhhHHHHHHHHhc---CCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHH
Q 042035 20 VVDEIVKMEKKIFPK--HEPLARSFDEELKK---KNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGE 94 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~ 94 (158)
|+.++.++....+.. ..+....+...+.+ .....+++.+++++||++.+........++..++|+|+|||+|+|+
T Consensus 10 d~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~ 89 (292)
T TIGR03448 10 LRRDVRELLAAATAVDGVAPVSEQVLRGLREPGAGHTRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGR 89 (292)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhhccccCCCCceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHH
Confidence 666777666644321 11122233333322 1334677778999999999875444456788999999999999999
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.|++.+++.+. ..+.+.+...|.++++||+++||+.....
T Consensus 90 ~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~ 129 (292)
T TIGR03448 90 ALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTREL 129 (292)
T ss_pred HHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccEE
Confidence 99999998764 45677788889999999999999988654
No 46
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.74 E-value=1.6e-16 Score=92.42 Aligned_cols=124 Identities=19% Similarity=0.328 Sum_probs=92.6
Q ss_pred CCcccccccCCccchhhHHH-HHHHHhh----hcCCChhhHHHHHHHHhcCC-ceEEEEEE--CCeEEEEEEEee-----
Q 042035 4 NGAVTELQRNSTNWTNVVDE-IVKMEKK----IFPKHEPLARSFDEELKKKN-SGLLYIQI--HGQVVGYVMYAW----- 70 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~vG~~~~~~----- 70 (158)
.+.+|++..+ |+.. ..++..+ -.-.+..+...+...-...+ ..+.++.+ .+++||.+.+..
T Consensus 6 ~~~lR~L~~~------D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfI 79 (150)
T KOG3396|consen 6 GFKLRPLEED------DYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFI 79 (150)
T ss_pred ceEEeecccc------cccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhh
Confidence 5789999988 3432 3333322 22334445555555555555 33444444 589999998763
Q ss_pred -cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 71 -PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 71 -~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
.....++|..++|++++||+++|+.|+..+...++..|+-++.+.+.+.| +.||+|+||...+
T Consensus 80 h~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~n---v~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 80 HGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKN---VKFYEKCGYSNAG 143 (150)
T ss_pred hcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhh---hhHHHHcCccccc
Confidence 33467889999999999999999999999999999999999999999887 6799999999876
No 47
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.74 E-value=1.6e-17 Score=103.62 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=112.1
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCC----------
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSL---------- 74 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~---------- 74 (158)
+.++.+++. ++..+..+....||...... +...........-++..++..||.+.+......
T Consensus 17 ~~l~~it~~------nl~~~~~l~~~~fP~~y~~k--fy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~ 88 (187)
T KOG3138|consen 17 IELRLITPN------NLKQLKQLNEDIFPISYVDK--FYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNR 88 (187)
T ss_pred eeeccCCcc------hHHHHHHHhccccCcchHHH--HHHHHHhcCCHHHhhhhccccccceeeeehhhhhhhhhhhccc
Confidence 678888888 89999999999998877643 444544444545555556677776666532111
Q ss_pred eEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCC-ccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCC--cceEE
Q 042035 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRT-VLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADR--PAYRM 151 (158)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g-~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~--~~~~m 151 (158)
..+|..++|.|.||.+|||+.|+.++.+++.... ++.+++.+...|..++.||++.||+.......+|.... +...|
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~~~~l 168 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPDDSFL 168 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcchhhh
Confidence 3789999999999999999999999999998776 88999999999999999999999999999999887653 44444
Q ss_pred Eeec
Q 042035 152 YMDF 155 (158)
Q Consensus 152 ~~~l 155 (158)
.+.+
T Consensus 169 ~~~~ 172 (187)
T KOG3138|consen 169 RKLL 172 (187)
T ss_pred hhhe
Confidence 4433
No 48
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=98.19 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=94.7
Q ss_pred HHHHhcCCceEEEEEE-CCeEEEEEEEeecC---CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 43 DEELKKKNSGLLYIQI-HGQVVGYVMYAWPT---SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 43 ~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~---~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
...+...+..+.++.. ++++.|++.-...+ .-++++..+.|.|+||+.|+|+.|+..+.+.....+.-.+.+.|..
T Consensus 33 l~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~ 112 (173)
T KOG3234|consen 33 LIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRV 112 (173)
T ss_pred HHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeec
Confidence 3344444555555555 68899999875432 2367889999999999999999999999999877777788999999
Q ss_pred CChhhHHHHHhCCCEEeeeeccccc--cCCcceEEEeeccC
Q 042035 119 FRTPAVNLYKKFGFQVDALIQGYYS--ADRPAYRMYMDFDS 157 (158)
Q Consensus 119 ~n~~~~~~y~~~Gf~~~~~~~~~~~--~~~~~~~m~~~l~~ 157 (158)
+|+.|+.+|+++||....+...||. +++|++.|+|.|+.
T Consensus 113 sN~iAI~mYkkLGY~~YR~Vi~YY~~g~deda~dMRKalSr 153 (173)
T KOG3234|consen 113 SNQIAIDMYKKLGYSVYRTVIEYYSVGPDEDAYDMRKALSR 153 (173)
T ss_pred cchhHHHHHHhcCceEEEeeeeeeccCCCcchHhhhhhhcc
Confidence 9999999999999999999999988 46799999998864
No 49
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.72 E-value=8e-16 Score=94.00 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=86.9
Q ss_pred CCcccccccCCccchhhHHHHHHHHhh----hc---CCC----hhhHHHHHHHHh---cCCceEEEEEE--CCeEEEEEE
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKK----IF---PKH----EPLARSFDEELK---KKNSGLLYIQI--HGQVVGYVM 67 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~----~~---~~~----~~~~~~~~~~~~---~~~~~~~~~~~--~~~~vG~~~ 67 (158)
++.||+++++ |++.+.++... .+ ... ......+..... ..+...+++.+ ++++||++.
T Consensus 1 Rl~lr~~~~~------D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~ 74 (142)
T PF13302_consen 1 RLTLRPLTPE------DADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIG 74 (142)
T ss_dssp SEEEEE-HGG------GHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEcCCHH------HHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEee
Confidence 3678999999 77777777641 11 121 111122221111 11244566665 347999999
Q ss_pred Eee--cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHH-hCCccEEEEEEcCCChhhHHHHHhCCCE
Q 042035 68 YAW--PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCR-TRTVLRITLHVDPFRTPAVNLYKKFGFQ 133 (158)
Q Consensus 68 ~~~--~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~-~~g~~~i~~~~~~~n~~~~~~y~~~Gf~ 133 (158)
+.. .....++++ +.|.|+|||+|+|+.++..+++++. ..|+.++.+.+.+.|.+|+++++|+||+
T Consensus 75 ~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 75 LYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp EEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred eeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 953 246777877 8899999999999999999999995 6799999999999999999999999996
No 50
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.67 E-value=3.9e-15 Score=83.05 Aligned_cols=61 Identities=26% Similarity=0.302 Sum_probs=52.8
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
+.|+.+.|+|+|||+|+|+.++..+.+.+.+.|.. ..+.+..+|.+|+++|+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 78899999999999999999999999999888764 57889999999999999999998863
No 51
>PRK13688 hypothetical protein; Provisional
Probab=99.66 E-value=3.8e-15 Score=91.94 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=61.1
Q ss_pred CceEEEEEECCeEEEEEEEeec----------CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCC
Q 042035 50 NSGLLYIQIHGQVVGYVMYAWP----------TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPF 119 (158)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~----------~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~ 119 (158)
...++++.+++++||++.+... ....++|..++|+|+|||+|+|++|++.+. +.++. + .+...
T Consensus 44 ~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~~~~-~--~~~~~ 116 (156)
T PRK13688 44 ESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SFQLP-I--KTIAR 116 (156)
T ss_pred CCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----HhCCe-E--EEEec
Confidence 4556778889999999876422 235678999999999999999999997543 33443 2 33334
Q ss_pred ChhhHHHHHhCCCEEeeee
Q 042035 120 RTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 120 n~~~~~~y~~~Gf~~~~~~ 138 (158)
| .++.||+|+||+..+..
T Consensus 117 ~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 117 N-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred c-chHHHHHhCCCEEeEEe
Confidence 4 57899999999999876
No 52
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.65 E-value=4.8e-15 Score=91.29 Aligned_cols=97 Identities=24% Similarity=0.406 Sum_probs=82.6
Q ss_pred HHHHhcCCceEEEEEECC-eEEEEEEEeec---CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 43 DEELKKKNSGLLYIQIHG-QVVGYVMYAWP---TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~-~~vG~~~~~~~---~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
...+......++++.+++ ++|||..+... .....++..+-|.++|||+|||+.|++.+...+.....+.|.++|..
T Consensus 84 ~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~ 163 (202)
T KOG2488|consen 84 AKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFS 163 (202)
T ss_pred HHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeec
Confidence 445555666777777765 89999999752 33578888999999999999999999999999988888899999999
Q ss_pred CChhhHHHHHhCCCEEeeeec
Q 042035 119 FRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 119 ~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
.|.+|+.||.++||......+
T Consensus 164 ~N~~al~Fy~~~gf~~~~~sp 184 (202)
T KOG2488|consen 164 ENIRALGFYHRLGFVVDEESP 184 (202)
T ss_pred ccchhHHHHHHcCcccCCCCC
Confidence 999999999999999887554
No 53
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.62 E-value=9e-15 Score=98.76 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=67.6
Q ss_pred ceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhC
Q 042035 51 SGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKF 130 (158)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~ 130 (158)
..+++..+++++||++.+.. ..+..++|+|+|||+|+|+.|++++++++++.|+..+.+.+... +..||+++
T Consensus 6 ~~~~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~---~~~fYek~ 77 (297)
T cd02169 6 YTVGIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPK---NAKFFRGL 77 (297)
T ss_pred EEEEEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEccc---HHHHHHHC
Confidence 34555566799999998852 25889999999999999999999999999999999999997654 46899999
Q ss_pred CCEEeeee
Q 042035 131 GFQVDALI 138 (158)
Q Consensus 131 Gf~~~~~~ 138 (158)
||+..+..
T Consensus 78 GF~~~~~~ 85 (297)
T cd02169 78 GFKELANA 85 (297)
T ss_pred CCEEeccc
Confidence 99988833
No 54
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.60 E-value=3.7e-14 Score=92.01 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=76.3
Q ss_pred CceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHh
Q 042035 50 NSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKK 129 (158)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~ 129 (158)
....+....+|++|..+......+..+.|..++++|+|||||+|+.|+..+.....+.|. ..++.+...|+.|.+.|++
T Consensus 176 ~~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk-~~~L~~~~~N~~A~~iY~r 254 (268)
T COG3393 176 RSRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGK-IPCLFVNSDNPVARRIYQR 254 (268)
T ss_pred ceeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCC-eeEEEEecCCHHHHHHHHH
Confidence 334444555669999999987788899999999999999999999999999999888885 5567777999999999999
Q ss_pred CCCEEeeeec
Q 042035 130 FGFQVDALIQ 139 (158)
Q Consensus 130 ~Gf~~~~~~~ 139 (158)
+||+..|...
T Consensus 255 iGF~~~g~~~ 264 (268)
T COG3393 255 IGFREIGEFR 264 (268)
T ss_pred hCCeecceEE
Confidence 9999998654
No 55
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.57 E-value=2.7e-13 Score=93.00 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=70.0
Q ss_pred ceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhC
Q 042035 51 SGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKF 130 (158)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~ 130 (158)
...+++.++|++||++.+.. + .+.+++|+|+|||+|+|+.|+.++++.+++.|+..+.+.+.+.| ..||+++
T Consensus 31 d~~vv~~~~~~lVg~g~l~g---~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~---~~fy~kl 102 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGIAG---N--VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEY---AALFEYC 102 (332)
T ss_pred CEEEEEEECCEEEEEEEEec---C--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchH---HHHHHHc
Confidence 45667778999999999852 1 47899999999999999999999999999999999999986654 5799999
Q ss_pred CCEEeeeec
Q 042035 131 GFQVDALIQ 139 (158)
Q Consensus 131 Gf~~~~~~~ 139 (158)
||...+...
T Consensus 103 GF~~i~~~~ 111 (332)
T TIGR00124 103 GFKTLAEAK 111 (332)
T ss_pred CCEEeeeec
Confidence 999998664
No 56
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.53 E-value=2.8e-14 Score=84.29 Aligned_cols=132 Identities=22% Similarity=0.318 Sum_probs=92.7
Q ss_pred hHHHHHHHHhhhcCCChhhH-HHHH-HHHhcCCceEEEEEE-CCeEEEEEEEeecCC--CeEEEEEEEeccCccCCcHHH
Q 042035 20 VVDEIVKMEKKIFPKHEPLA-RSFD-EELKKKNSGLLYIQI-HGQVVGYVMYAWPTS--LSASITKLAVKENYRGQGHGE 94 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~--~~~~i~~~~v~~~~r~~Gig~ 94 (158)
.+-++..+..+.|--++... .++. ..+. .....+..+. +|++|+++.+.++.. ....|+.+.|.|++||+|+|.
T Consensus 17 ely~LlkLRv~VFVVEQ~CPY~E~Dg~Dl~-~~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~ 95 (155)
T COG2153 17 ELYELLKLRVDVFVVEQNCPYPELDGKDLL-GDTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQ 95 (155)
T ss_pred HHHHHHHhheeEEEEecCCCCcCcCCcccc-cccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhH
Confidence 55666666666663221110 0111 1111 2344455555 999999999986443 236699999999999999999
Q ss_pred HHHHHHHHHHHhCC-ccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCCcceEEEeeccC
Q 042035 95 ALLEAAIKKCRTRT-VLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADRPAYRMYMDFDS 157 (158)
Q Consensus 95 ~l~~~~~~~~~~~g-~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~~ 157 (158)
.||..+++.+.+.. -+.+.+. +....+.||.+.||...+ ..|..++-+.+-|.+...+
T Consensus 96 ~Lm~~AL~~~~~~~p~~~v~l~---AQahLq~fYa~~GFv~~~--e~yledGIpHv~M~r~~~~ 154 (155)
T COG2153 96 QLMEKALETAGREWPDKPVYLG---AQAHLQDFYASFGFVRVG--EEYLEDGIPHVGMIREVIQ 154 (155)
T ss_pred HHHHHHHHHHHhhCCCCCeEEe---hHHHHHHHHHHhCcEEcC--chhhcCCCCchhhhhcccC
Confidence 99999999997763 4556666 667789999999999987 5677777788888776653
No 57
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4.3e-13 Score=85.33 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=70.8
Q ss_pred CeEEEEEEEeecC----CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 60 GQVVGYVMYAWPT----SLSASITKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 60 ~~~vG~~~~~~~~----~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
+++||.+.+.... ....+++ +.+.|+|+|+|+|++++..+++++.. .++.++.+.|.+.|.+|+++++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~ig-~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEIG-YWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEEE-EEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 4899999998533 3455555 66799999999999999999999977 5999999999999999999999999999
Q ss_pred eeeeccc
Q 042035 135 DALIQGY 141 (158)
Q Consensus 135 ~~~~~~~ 141 (158)
.+..+..
T Consensus 156 eg~~~~~ 162 (187)
T COG1670 156 EGELRQH 162 (187)
T ss_pred hhhhhhc
Confidence 9987664
No 58
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.51 E-value=7.2e-13 Score=80.75 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=75.2
Q ss_pred eEEEEEECCeEEEEEEEeecCC-----CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHH
Q 042035 52 GLLYIQIHGQVVGYVMYAWPTS-----LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNL 126 (158)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~~-----~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~ 126 (158)
.+|.+..++++||++.+...-+ .-++|+ ..|+|+.||||+|+++++.+++.|++.|++.|.++|+.+|.+|.+.
T Consensus 70 ~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkv 148 (174)
T COG3981 70 TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKV 148 (174)
T ss_pred eEEEEecCCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHH
Confidence 3455555799999999985322 245665 7899999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEeeeecc
Q 042035 127 YKKFGFQVDALIQG 140 (158)
Q Consensus 127 y~~~Gf~~~~~~~~ 140 (158)
-+++|-....++..
T Consensus 149 I~~NGGile~~~~~ 162 (174)
T COG3981 149 IEANGGILENEFFG 162 (174)
T ss_pred HHhcCCEEeEEEcc
Confidence 99999988876643
No 59
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.50 E-value=1.2e-12 Score=86.80 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=67.8
Q ss_pred ceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhC
Q 042035 51 SGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKF 130 (158)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~ 130 (158)
...+++..+|++|+.+.......+..+|. +.++|+|||||+|+.+...++..|.++|..- .+++ .|.+++++-+|+
T Consensus 165 G~Gf~i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P-~WDc--~N~~S~~lA~kL 240 (265)
T PF12746_consen 165 GFGFCILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYP-SWDC--HNLASIALAEKL 240 (265)
T ss_dssp --EEEEEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EE-E-EE--SSHHHHHHHHHC
T ss_pred CcEEEEEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCc-CeeC--CCHHHHHHHHHc
Confidence 45677778999997665554556667775 8899999999999999999999999998654 4455 699999999999
Q ss_pred CCEEeeeeccccccC
Q 042035 131 GFQVDALIQGYYSAD 145 (158)
Q Consensus 131 Gf~~~~~~~~~~~~~ 145 (158)
||+.......|+..+
T Consensus 241 Gf~~~~~Y~~Y~v~~ 255 (265)
T PF12746_consen 241 GFHFDFEYTAYEVNN 255 (265)
T ss_dssp T--EEEEEEEE----
T ss_pred CCcccceeeeeeecc
Confidence 999999988886544
No 60
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.50 E-value=7.6e-13 Score=80.54 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=88.1
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEE--EECCeEEEEEEEeec--CCCeEEEEEEEeccCccCCcHHHH
Q 042035 20 VVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYI--QIHGQVVGYVMYAWP--TSLSASITKLAVKENYRGQGHGEA 95 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vG~~~~~~~--~~~~~~i~~~~v~~~~r~~Gig~~ 95 (158)
.+.+...+.+..|+.......+-...-.+.....++. .....+||...+... .....++..++|+.+.||+|+|+.
T Consensus 24 Llk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~ 103 (225)
T KOG3397|consen 24 LLKESMTLINSEWPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKF 103 (225)
T ss_pred HHHHHHHHHhccCCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHH
Confidence 5566677788888877665444333333322222222 236789999988753 346788899999999999999999
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccc
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGY 141 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~ 141 (158)
||+.++.+++..|++.+++.+... ..||+++||+...-+..+
T Consensus 104 lMk~~E~~~R~~gf~~~yLsT~DQ----~~FYe~lGYe~c~Pi~~~ 145 (225)
T KOG3397|consen 104 LMKSTEKWMREKGFNEAYLSTDDQ----CRFYESLGYEKCDPIVHS 145 (225)
T ss_pred HHHHHHHHHHHhhhhheeeecccc----hhhhhhhcccccCceecc
Confidence 999999999999999999998765 389999999987655433
No 61
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.43 E-value=1.4e-11 Score=78.06 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCceEEEEEECC--eEEEEEEEeecC-------------------------------------CCeEEEE
Q 042035 39 ARSFDEELKKKNSGLLYIQIHG--QVVGYVMYAWPT-------------------------------------SLSASIT 79 (158)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~--~~vG~~~~~~~~-------------------------------------~~~~~i~ 79 (158)
.+.+...+..+....++...++ +++|++.+..+. -..+.|.
T Consensus 15 PnDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIv 94 (196)
T PF13718_consen 15 PNDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIV 94 (196)
T ss_dssp HHHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEE
T ss_pred HHHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEE
Confidence 4566777777888888888888 999999875110 1247899
Q ss_pred EEEeccCccCCcHHHHHHHHHHHHH-------------------------HhCCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 80 KLAVKENYRGQGHGEALLEAAIKKC-------------------------RTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 80 ~~~v~~~~r~~Gig~~l~~~~~~~~-------------------------~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
.++|+|++|++|+|+++++.+.+++ +..+++.+... +..++...+||.|+||..
T Consensus 95 RIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtS-FG~t~~Ll~FW~k~gf~p 173 (196)
T PF13718_consen 95 RIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTS-FGATPELLKFWQKNGFVP 173 (196)
T ss_dssp EEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEE-EE--HHHHHHHHCTT-EE
T ss_pred EEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEec-cCCCHHHHHHHHHCCcEE
Confidence 9999999999999999999999999 35677776654 344688999999999999
Q ss_pred eeeeccc-cccCCcceEEEeecc
Q 042035 135 DALIQGY-YSADRPAYRMYMDFD 156 (158)
Q Consensus 135 ~~~~~~~-~~~~~~~~~m~~~l~ 156 (158)
+.....- -..++...+|.+.|+
T Consensus 174 v~l~~~~n~~SGe~S~imlr~ls 196 (196)
T PF13718_consen 174 VYLGQTRNEASGEHSAIMLRPLS 196 (196)
T ss_dssp EEE-SS--TTT---EEEEEEE--
T ss_pred EEEecCcccccCceeeeEEeecC
Confidence 8755332 224678888888763
No 62
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.41 E-value=9.2e-12 Score=90.03 Aligned_cols=87 Identities=17% Similarity=0.345 Sum_probs=68.6
Q ss_pred CCceEEEEEE---CCeEEEEEEEeecCC--------CeEEEEEEE-----------eccCccCCcHHHHHHHHHHHHHHh
Q 042035 49 KNSGLLYIQI---HGQVVGYVMYAWPTS--------LSASITKLA-----------VKENYRGQGHGEALLEAAIKKCRT 106 (158)
Q Consensus 49 ~~~~~~~~~~---~~~~vG~~~~~~~~~--------~~~~i~~~~-----------v~~~~r~~Gig~~l~~~~~~~~~~ 106 (158)
.+...|..+. ++.+||++.+..+.. ..+.|..+. ++|+|||+|+|+.|++++++.|++
T Consensus 409 ~G~e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~ 488 (522)
T TIGR01211 409 GGTEFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAE 488 (522)
T ss_pred CCCeEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHH
Confidence 3445666665 578999999984332 234455555 358999999999999999999999
Q ss_pred CCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 107 RTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 107 ~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.|+..+.+. .|..+++||+++||...+..
T Consensus 489 ~G~~~i~v~---s~~~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 489 EGSEKILVI---SGIGVREYYRKLGYELDGPY 517 (522)
T ss_pred CCCCEEEEe---eCchHHHHHHHCCCEEEcce
Confidence 999999875 47899999999999988743
No 63
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.30 E-value=4.5e-11 Score=62.52 Aligned_cols=61 Identities=39% Similarity=0.537 Sum_probs=53.0
Q ss_pred EEEEECCeEEEEEEEeecC--CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEE
Q 042035 54 LYIQIHGQVVGYVMYAWPT--SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITL 114 (158)
Q Consensus 54 ~~~~~~~~~vG~~~~~~~~--~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~ 114 (158)
+++..+++++|++.+.... ...+++..++|+|+|||+|+|+.++..+.+++++.|++.+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 4455689999999998644 477889999999999999999999999999999888888765
No 64
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=99.23 E-value=1.8e-11 Score=73.22 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=88.4
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCCChhhHHHHHHH-HhcCCceE---------EEEEECCeEEEEEEEee----
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPKHEPLARSFDEE-LKKKNSGL---------LYIQIHGQVVGYVMYAW---- 70 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~vG~~~~~~---- 70 (158)
+.||+..++ +++++..+....||+......+.... +.+-...+ +.....+.+||++....
T Consensus 12 ~~irp~i~e------~~q~~~~Lea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~E 85 (190)
T KOG4144|consen 12 PRIRPGIPE------SCQRRHTLEASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDKE 85 (190)
T ss_pred ccCCCCChH------HHHHHhccccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcch
Confidence 678899888 89999999999998776554444433 32222211 22223688999887641
Q ss_pred -----------cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhC-CccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 71 -----------PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 71 -----------~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
.......|..+.|+|+||.+|+|..|+...++..-.+ -..++.+- ...+.+.||+++||+..+.
T Consensus 86 ~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li---~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 86 RLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALI---CHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred hhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeee---ecCCccchhHhcCceeecc
Confidence 1234588999999999999999999988855555333 44566666 4567899999999999985
No 65
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=99.22 E-value=4.8e-10 Score=65.58 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=61.5
Q ss_pred cCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC---CC-hhh
Q 042035 48 KKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP---FR-TPA 123 (158)
Q Consensus 48 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~---~n-~~~ 123 (158)
+....++++.-|++++|.+.+.. .+..+.+..++|++-=|++|+|+.|++.+...+ .++....+.... .+ ...
T Consensus 35 ~~~~~l~aArFNdRlLgAv~v~~-~~~~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~ 111 (128)
T PF12568_consen 35 DEGHRLFAARFNDRLLGAVKVTI-SGQQAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVM 111 (128)
T ss_dssp -SSEEEEEEEETTEEEEEEEEEE-ETTEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHH
T ss_pred ccCCeEEEEEechheeeeEEEEE-cCcceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHH
Confidence 55778888999999999999984 567999999999999999999999999988877 456666665432 22 335
Q ss_pred HHHHHhCCCEEe
Q 042035 124 VNLYKKFGFQVD 135 (158)
Q Consensus 124 ~~~y~~~Gf~~~ 135 (158)
..|...+||...
T Consensus 112 ~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 112 AAFMQACGFSAQ 123 (128)
T ss_dssp HHHHHHHT-EE-
T ss_pred HHHHHHcCcccc
Confidence 688899999654
No 66
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.22 E-value=8.5e-11 Score=64.58 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+|++|.++... ..+++..-++.|+|||||+.+.++......+.++|+. ++..|...|+.++++.+++||....
T Consensus 7 eG~PVSW~lmd----qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 7 EGNPVSWSLMD----QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred CCCEeEEEEec----ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCeecC
Confidence 78899988875 4566778899999999999999999999999999986 6889999999999999999999764
No 67
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=99.15 E-value=1.7e-09 Score=59.00 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=54.4
Q ss_pred EEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHh
Q 042035 54 LYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKK 129 (158)
Q Consensus 54 ~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~ 129 (158)
|.+..+|+.+|++.+.. .++...+....|.|++||+|+|+.|++.++++|++.|.+ |.. .-+-+..++++
T Consensus 2 F~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p----~C~y~~~~~~~ 71 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVP----TCSYVAKYFRR 71 (78)
T ss_dssp EEEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEE----TSHHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEE----ECHHHHHHHHh
Confidence 34556788999999974 778999999999999999999999999999999999853 332 33445555554
No 68
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=99.11 E-value=5.5e-10 Score=65.08 Aligned_cols=128 Identities=11% Similarity=0.096 Sum_probs=86.9
Q ss_pred CCCCcccccccCCccchhhHHHHHHHHhhhcCCC-hhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEe-----------
Q 042035 2 GSNGAVTELQRNSTNWTNVVDEIVKMEKKIFPKH-EPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYA----------- 69 (158)
Q Consensus 2 ~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~----------- 69 (158)
||.+.|+..... +...+..+.++.--.. |-..+.+.....+. |++..+|.+.|++...
T Consensus 5 smp~~~~D~~ap------d~aavLaLNNeha~elswLe~erL~~l~~eA----F~ArR~G~l~afl~tFd~~a~ydSpNF 74 (167)
T COG3818 5 SMPILIRDVRAP------DLAAVLALNNEHALELSWLELERLYRLYKEA----FVARRDGNLAAFLVTFDSSARYDSPNF 74 (167)
T ss_pred ccceehhhhcCC------chhhHHhccchhhhhccccCHHHHHHHHHHH----HHHhhccchhhheeeccccccCCCCce
Confidence 344555655555 6677777766542111 11112222222211 3555566666655432
Q ss_pred ----ecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEE--cCCChhhHHHHHhCCCEEeeeec
Q 042035 70 ----WPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHV--DPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 70 ----~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~--~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
...++..++..++|....||+|+|++|.+.+.++|...|+..+.+.| ++.|+++-.|...+||+++|.-.
T Consensus 75 lWFrErYe~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 75 LWFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred eehhhhCCceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 12345678999999999999999999999999999999988877775 57899999999999999998543
No 69
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=99.04 E-value=2.1e-08 Score=74.97 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCceEEEEEECC-eEEEEEEEeecC------------------------------------CCeEEEEEEE
Q 042035 40 RSFDEELKKKNSGLLYIQIHG-QVVGYVMYAWPT------------------------------------SLSASITKLA 82 (158)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~-~~vG~~~~~~~~------------------------------------~~~~~i~~~~ 82 (158)
+.+...+..++..++++..++ ++|+.+.+.... -..+.|..++
T Consensus 459 ~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIA 538 (758)
T COG1444 459 NDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIA 538 (758)
T ss_pred HHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEE
Confidence 455555666677777777665 888877764211 1246799999
Q ss_pred eccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecccc-ccCCcceEEEeeccC
Q 042035 83 VKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYY-SADRPAYRMYMDFDS 157 (158)
Q Consensus 83 v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~-~~~~~~~~m~~~l~~ 157 (158)
|||++|++|||+.+++.+.++++ .|++.+... .-.++...+||.|+||.++...+..- ..++...+|-+.|++
T Consensus 539 vhPe~q~~GiGsrlL~~l~~~a~-~~~Dwlgvs-FG~t~~L~rFW~rnGF~pVhls~~rn~~SGeys~i~lkpLs~ 612 (758)
T COG1444 539 VHPELQRMGIGSRLLALLIEEAR-KGLDWLGVS-FGYTEELLRFWLRNGFVPVHLSPTRNASSGEYTAIVLKPLSD 612 (758)
T ss_pred eCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeec-cCCCHHHHHHHHHcCeEEEEecCccCcCCCceeEEEEecCCH
Confidence 99999999999999999999997 466766543 44578899999999999998654332 235677788887764
No 70
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=99.00 E-value=3.3e-09 Score=59.89 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=56.4
Q ss_pred cCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCcc
Q 042035 48 KKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVL 110 (158)
Q Consensus 48 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~ 110 (158)
+.....++..++|+.+|.+.+....++...|..-+|.+++||||+|+.|+..+++.|++.|.+
T Consensus 12 ~~~~~~y~~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k 74 (99)
T COG2388 12 NGENGRYVLTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK 74 (99)
T ss_pred ccCceEEEEecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe
Confidence 446677888889999999999977778999999999999999999999999999999998864
No 71
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=4.1e-08 Score=58.67 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=63.7
Q ss_pred eEEEEEEEee---cC-------CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhC-CccEEEEEEcCCChhhHHHHHh
Q 042035 61 QVVGYVMYAW---PT-------SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPFRTPAVNLYKK 129 (158)
Q Consensus 61 ~~vG~~~~~~---~~-------~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~~ 129 (158)
.+||-+.+.. ++ -..+++.-+.-.|.-||+|+|+..+.+++.|+... ++.+..+.+...|.+++++|+|
T Consensus 83 ~MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk 162 (185)
T KOG4135|consen 83 HMVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKK 162 (185)
T ss_pred hhccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHH
Confidence 3678776642 11 12467777778999999999999999999999764 8899999999999999999999
Q ss_pred CCCEEeee
Q 042035 130 FGFQVDAL 137 (158)
Q Consensus 130 ~Gf~~~~~ 137 (158)
++|.....
T Consensus 163 ~~f~q~~~ 170 (185)
T KOG4135|consen 163 FLFTQVFY 170 (185)
T ss_pred hhheeeee
Confidence 99998875
No 72
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.90 E-value=6.4e-08 Score=55.69 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=63.8
Q ss_pred hcCCceEEEEEECCeEEEEEEEee----cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChh
Q 042035 47 KKKNSGLLYIQIHGQVVGYVMYAW----PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTP 122 (158)
Q Consensus 47 ~~~~~~~~~~~~~~~~vG~~~~~~----~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~ 122 (158)
..+....++...+|.+|||+.+-. +......+..+++...|||+|+|++..+++...++ | .-.+.+..+|.+
T Consensus 33 ~~~~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g--~w~Va~i~EN~P 108 (143)
T COG5628 33 RDPVREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--G--VWQVATVRENTP 108 (143)
T ss_pred cCcccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh--c--eEEEEEeccCCh
Confidence 345555677778999999998752 22345667889999999999999999998877654 3 234456679999
Q ss_pred hHHHHHhCCCEE
Q 042035 123 AVNLYKKFGFQV 134 (158)
Q Consensus 123 ~~~~y~~~Gf~~ 134 (158)
|+++|++.-...
T Consensus 109 A~~fwK~~~~t~ 120 (143)
T COG5628 109 ARAFWKRVAETY 120 (143)
T ss_pred hHHHHHhhhccc
Confidence 999999976654
No 73
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.86 E-value=1.9e-08 Score=68.38 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=69.5
Q ss_pred CceEEEEEECCeEEEEEEEee-----c--CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChh
Q 042035 50 NSGLLYIQIHGQVVGYVMYAW-----P--TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTP 122 (158)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~-----~--~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~ 122 (158)
.....++..+.++++-+...+ . .-+.++|..+++.|+|||+|..++|+.+.....+++|+....++ +.
T Consensus 38 ~~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~-----P~ 112 (389)
T COG4552 38 EPNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH-----PF 112 (389)
T ss_pred CCcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec-----cC
Confidence 445677888899998877652 1 12567899999999999999999999999999999999877776 44
Q ss_pred hHHHHHhCCCEEeeeec
Q 042035 123 AVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 123 ~~~~y~~~Gf~~~~~~~ 139 (158)
+.++|+|.||+....+.
T Consensus 113 s~~iYrKfGye~asn~~ 129 (389)
T COG4552 113 SGGIYRKFGYEYASNYH 129 (389)
T ss_pred chhhHhhccccccceEE
Confidence 56899999999887643
No 74
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=3.3e-07 Score=58.65 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=98.6
Q ss_pred CCCcccccccCCccchhhHHHHHHHHhhhcCCCh---hhHHHHHHHHhcCCceEEEEEEC-CeEEEEEEEeecC---CCe
Q 042035 3 SNGAVTELQRNSTNWTNVVDEIVKMEKKIFPKHE---PLARSFDEELKKKNSGLLYIQIH-GQVVGYVMYAWPT---SLS 75 (158)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~vG~~~~~~~~---~~~ 75 (158)
|.+.+|.++.-. ++.+........|.... .....+. .+...+..++.++.+ |++||...-.+.. ...
T Consensus 1 m~vvvrrl~dp~-----el~~~~dV~~~aWg~~d~~~~~~d~i~-al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y 74 (266)
T COG3375 1 MKVVVRRLTDPA-----ELDEAEDVQASAWGSEDRDGAPADTIR-ALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLY 74 (266)
T ss_pred CceeEEecCCHH-----HHHHHHHHHHHHhCccccccchHHHHH-HHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCcee
Confidence 345666666331 67777888888886432 2223333 444556677777774 4999988776411 224
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHH-HHhCCCEEeeeeccccccCC
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNL-YKKFGFQVDALIQGYYSADR 146 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~-y~~~Gf~~~~~~~~~~~~~~ 146 (158)
.+...+.|+|++|+.|+|-+|-..--+++..+|+..+.++-++.|.--.+| ..|+|-...-.+++||..-.
T Consensus 75 ~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nfYg~m~ 146 (266)
T COG3375 75 LYSHMLGVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNFYGEMA 146 (266)
T ss_pred eeeeehhccccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEeeccccchhc
Confidence 566779999999999999999999999999999999999988877443333 36888888778888888643
No 75
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.69 E-value=1.2e-06 Score=55.59 Aligned_cols=133 Identities=13% Similarity=0.153 Sum_probs=87.5
Q ss_pred hHHHHHHHHhhhcCCC--hhh--H-HHHHHHHhcCCceEEEEEECCeEEEEEEEee---------------------cCC
Q 042035 20 VVDEIVKMEKKIFPKH--EPL--A-RSFDEELKKKNSGLLYIQIHGQVVGYVMYAW---------------------PTS 73 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~---------------------~~~ 73 (158)
.+.++.++..+.|.+. |.. . ..-...+.+....++++.++|+++|++.+.+ ..+
T Consensus 9 ~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~ 88 (182)
T PF00765_consen 9 LLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSP 88 (182)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SST
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCC
Confidence 6788888888887542 111 1 1222334445566677778899999998852 124
Q ss_pred CeEEEEEEEeccCccC------CcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCCc
Q 042035 74 LSASITKLAVKENYRG------QGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADRP 147 (158)
Q Consensus 74 ~~~~i~~~~v~~~~r~------~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~ 147 (158)
..+++..++|+++.++ .-+...|+..+.++|.+.|++.+...+. .+..+++++.||...-.-...-..++.
T Consensus 89 ~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~---~~~~r~l~r~G~~~~~lG~~~~~~~~~ 165 (182)
T PF00765_consen 89 DVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVD---PAMERILRRAGWPVRRLGPPRSIGGER 165 (182)
T ss_dssp TEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEE---HHHHHHHHHCT-EEEESSEEEEETTEE
T ss_pred cceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEC---hHHHHHHHHcCCceEECCCCeeeCCeE
Confidence 6799999999998532 2467889999999999999999987754 568999999999877544433333444
Q ss_pred ceEEEeec
Q 042035 148 AYRMYMDF 155 (158)
Q Consensus 148 ~~~m~~~l 155 (158)
.+....++
T Consensus 166 ~~a~~i~v 173 (182)
T PF00765_consen 166 VVALLIPV 173 (182)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEC
Confidence 44444443
No 76
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=98.56 E-value=9.7e-06 Score=52.64 Aligned_cols=116 Identities=9% Similarity=0.155 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHhhhcCCCh--h--hHH-HHHHHHhcCCceEEEEE-ECCeEEEEEEEee---------------------
Q 042035 18 TNVVDEIVKMEKKIFPKHE--P--LAR-SFDEELKKKNSGLLYIQ-IHGQVVGYVMYAW--------------------- 70 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~--------------------- 70 (158)
.+.+.++.++..+.|.... . ..+ .-...+......++++. .+|+++|++.+.+
T Consensus 15 ~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~ 94 (207)
T PRK13834 15 ASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLN 94 (207)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCC
Confidence 3477888888888875321 1 111 11223333444555555 4789999997741
Q ss_pred cCCCeEEEEEEEeccCccCC---c----HHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 71 PTSLSASITKLAVKENYRGQ---G----HGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 71 ~~~~~~~i~~~~v~~~~r~~---G----ig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
..+..+++..++|+|++++. + +...|+..+.+++...|++.+...+.+ ...++++++||....
T Consensus 95 ~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~---~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 95 AHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDL---RFERILARAGWPMQR 164 (207)
T ss_pred CCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHHHcCCCeEE
Confidence 12357999999999986422 2 567899999999999999998877544 577899999987643
No 77
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.45 E-value=4.3e-06 Score=55.86 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=65.3
Q ss_pred EEEEEE-CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCC
Q 042035 53 LLYIQI-HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFG 131 (158)
Q Consensus 53 ~~~~~~-~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~G 131 (158)
++++.. ++++|++.++. .+ -|.+++|+|.+||-|++-+|+.++++.+.++|..++.+.+-+. ...+|+.+|
T Consensus 38 ~v~~~~~~~~iiacGsia--Gn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~---~~~lFk~~G 109 (352)
T COG3053 38 FVAIYRDNEEIIACGSIA--GN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPE---YAALFKQCG 109 (352)
T ss_pred EEEEEcCCCcEEEecccc--cc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechh---HHHHHHhCC
Confidence 333443 59999998885 11 3678999999999999999999999999999999998886554 467999999
Q ss_pred CEEeeeecc
Q 042035 132 FQVDALIQG 140 (158)
Q Consensus 132 f~~~~~~~~ 140 (158)
|..+....+
T Consensus 110 F~~i~~~~~ 118 (352)
T COG3053 110 FSEIASAEN 118 (352)
T ss_pred ceEeeccCc
Confidence 998876544
No 78
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=2.3e-05 Score=50.02 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=89.7
Q ss_pred hHHHHHHHHhhhcCCC--h--h-hHHHHHHHHhcCCceEEEE-EECCeEEEEEEEee---------------------cC
Q 042035 20 VVDEIVKMEKKIFPKH--E--P-LARSFDEELKKKNSGLLYI-QIHGQVVGYVMYAW---------------------PT 72 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~~~~~~~~-~~~~~~vG~~~~~~---------------------~~ 72 (158)
.++++..+..+.|.+. | . ....-.+.+.+.+..++++ ..+|+++|++.+-+ ..
T Consensus 16 ~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~ 95 (209)
T COG3916 16 ALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSS 95 (209)
T ss_pred HHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCC
Confidence 6678888888877432 1 1 1112233444455566666 56999999998741 12
Q ss_pred CCeEEEEEEEecc--CccCCc----HHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCC
Q 042035 73 SLSASITKLAVKE--NYRGQG----HGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADR 146 (158)
Q Consensus 73 ~~~~~i~~~~v~~--~~r~~G----ig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~ 146 (158)
+..++...++|++ .-+..| ++..|+.-+++++.+.|+++|...++ ....+.++++||.....-+.....++
T Consensus 96 p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~---~~meril~r~Gw~~~riG~~~~ig~~ 172 (209)
T COG3916 96 PGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTD---TGMERILRRAGWPLTRIGPPLTIGNE 172 (209)
T ss_pred CCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEc---hHHHHHHHHcCCCeEEcCCceeeCCe
Confidence 3678999998886 333332 46788889999999999999987754 46889999999987765444444455
Q ss_pred cceEEEeecc
Q 042035 147 PAYRMYMDFD 156 (158)
Q Consensus 147 ~~~~m~~~l~ 156 (158)
..+...+++.
T Consensus 173 ~~VA~~l~i~ 182 (209)
T COG3916 173 RAVALLLDID 182 (209)
T ss_pred eEEEEEeecC
Confidence 5666555544
No 79
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.39 E-value=6.3e-07 Score=52.47 Aligned_cols=44 Identities=45% Similarity=0.712 Sum_probs=40.7
Q ss_pred EEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCC
Q 042035 81 LAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGF 132 (158)
Q Consensus 81 ~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf 132 (158)
++|+|++||+|+|+.|+..+.++++..|+. .|..+..+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 999999999999999999999999987765 67889999999998
No 80
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=98.35 E-value=4.1e-05 Score=46.40 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=55.6
Q ss_pred CceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEE
Q 042035 50 NSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHV 116 (158)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~ 116 (158)
...++++..+|++||+.... ...+..+....+++|+++..+.|..|+..+++++.+.|++.+-+..
T Consensus 70 ~~~l~~~~~~g~~va~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 70 RLRLFVLYDGGEPVAFALGF-RHGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred CEEEEEEEECCEEEEEEEEE-EECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 44567777799999998776 3555777788889999999999999999999999999998877764
No 81
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.32 E-value=3.4e-06 Score=60.06 Aligned_cols=126 Identities=12% Similarity=0.202 Sum_probs=91.5
Q ss_pred CCcccccccCCccchhhHHHHHHHHhhh--cCC--ChhhHHHHHHHHhcCCceEEEEEE-----CCeEEEEEEEeecCCC
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKKI--FPK--HEPLARSFDEELKKKNSGLLYIQI-----HGQVVGYVMYAWPTSL 74 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vG~~~~~~~~~~ 74 (158)
.+++++.+.. +++.+.++.+.+ |.- .....+...+...++...++-+.. ++-+||++.+. ..+.
T Consensus 413 ~l~vs~~de~------~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~-kk~~ 485 (574)
T COG3882 413 RLTVSKFDEV------NIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVE-KKES 485 (574)
T ss_pred EEEEeecccc------CcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEE-ecCC
Confidence 4556666666 677777776654 321 122233444433333333343332 67799999997 4558
Q ss_pred eEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEE--cCCChhhHHHHHhCCCEEee
Q 042035 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHV--DPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~--~~~n~~~~~~y~~~Gf~~~~ 136 (158)
.+.|..+......-|+++-+.|+..+++.|...|...+...- ...|.+...||+++||+..+
T Consensus 486 ~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 486 EWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred eEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 899999999999999999999999999999999999888773 45699999999999999665
No 82
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=98.31 E-value=1.5e-05 Score=52.97 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=76.0
Q ss_pred hHHHHHHHHhhhcCCChhhH------H-HHHHHHhcCCceEEEEEE--CCeEEEEEEEeec-------------------
Q 042035 20 VVDEIVKMEKKIFPKHEPLA------R-SFDEELKKKNSGLLYIQI--HGQVVGYVMYAWP------------------- 71 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~------------------- 71 (158)
.+.++..+..+.|....... . .-...+.. ....+++.+ +|++||++.+.+.
T Consensus 18 ~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~-~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~ 96 (241)
T TIGR03694 18 LLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDA-HSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSL 96 (241)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCC-CCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhcccc
Confidence 56777777777763221110 1 11122222 344444543 5899999987531
Q ss_pred -----------CCCeEEEEEEEeccCccCC--------c--------------------HHHHHHHHHHHHHHhCCccEE
Q 042035 72 -----------TSLSASITKLAVKENYRGQ--------G--------------------HGEALLEAAIKKCRTRTVLRI 112 (158)
Q Consensus 72 -----------~~~~~~i~~~~v~~~~r~~--------G--------------------ig~~l~~~~~~~~~~~g~~~i 112 (158)
.+..+++..++|+|++|++ | +...|+..+.+++...|++.+
T Consensus 97 ~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~ 176 (241)
T TIGR03694 97 DGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHW 176 (241)
T ss_pred chhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEE
Confidence 1246889999999999974 2 557789999999999999998
Q ss_pred EEEEcCCChhhHHHHHhCCCEEee
Q 042035 113 TLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 113 ~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
...+.+ ...++++++|+....
T Consensus 177 ~~v~~~---~l~r~l~r~G~~~~~ 197 (241)
T TIGR03694 177 YAIMEP---RLARLLSRFGIQFRQ 197 (241)
T ss_pred EEEeCH---HHHHHHHHhCCceEE
Confidence 877544 577899999986543
No 83
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=98.28 E-value=0.00018 Score=45.48 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=65.9
Q ss_pred hHHHHHHHHhhh-cCCChhhHHHHHHHHhcCCceEEEEEE-CCeEEEEEEEee-------cCCCeEEEEEEEeccCccCC
Q 042035 20 VVDEIVKMEKKI-FPKHEPLARSFDEELKKKNSGLLYIQI-HGQVVGYVMYAW-------PTSLSASITKLAVKENYRGQ 90 (158)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~-------~~~~~~~i~~~~v~~~~r~~ 90 (158)
.++++..+.... |.-...-...|.+.+.+.-...+++.. .+++|+.+.+.. .+.+...++.++++|+|||+
T Consensus 14 ~~d~fmk~~g~~r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~ 93 (181)
T PF06852_consen 14 YFDQFMKLHGNERWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGK 93 (181)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCc
Confidence 556666665442 111111122333333332223333333 456887776532 12457889999999999999
Q ss_pred cHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 91 GHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
|+++.+-..+.+..+..+ .-..+. .+..+.++|.+ +||...+.
T Consensus 94 ~~~kl~~~~~~~~~~~~~-~N~~~~---~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 94 GIMKLQDDICMDELDSVD-DNSVAQ---GNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred chHHHHHHHHHHHhccCC-Cceeee---cCHHHHHHHHHHhCCCCCcc
Confidence 999755555555544433 333333 66788889976 89888776
No 84
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.21 E-value=0.00013 Score=50.51 Aligned_cols=126 Identities=19% Similarity=0.246 Sum_probs=68.1
Q ss_pred CcccccccCCccchhhHHHHHHHHhhh---c---CCChh-hH-------HHHHHHHh-c--CCceEEEEEE--CCeEEEE
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKI---F---PKHEP-LA-------RSFDEELK-K--KNSGLLYIQI--HGQVVGY 65 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-~~-------~~~~~~~~-~--~~~~~~~~~~--~~~~vG~ 65 (158)
+.|||++.+ |++.+.++-... + |.... +. ..+..... . +..+.++.++ .|++||+
T Consensus 2 ~viRp~~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGt 75 (342)
T PF04958_consen 2 LVIRPARPS------DLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGT 75 (342)
T ss_dssp EEEEE--GG------GHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEE
T ss_pred eEEecCchh------hHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEE
Confidence 568999999 888888876654 2 22211 11 11111111 1 1234555554 6999999
Q ss_pred EEEee------------------------------------cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHH---Hh
Q 042035 66 VMYAW------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAAIKKC---RT 106 (158)
Q Consensus 66 ~~~~~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~---~~ 106 (158)
+.+.. ......++..++++|+||+.|.|+.|-+.-.-.+ .+
T Consensus 76 s~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~ 155 (342)
T PF04958_consen 76 SAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRE 155 (342)
T ss_dssp EEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GG
T ss_pred EeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChh
Confidence 98840 1234678999999999999999999977644443 33
Q ss_pred CCccEEEEEEcC--CChhhHHHHHhCCCEEee
Q 042035 107 RTVLRITLHVDP--FRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 107 ~g~~~i~~~~~~--~n~~~~~~y~~~Gf~~~~ 136 (158)
+=.+++...... +-..--.||+.+|=+..+
T Consensus 156 rF~~~viAElrG~~De~G~SPFWdalG~~FF~ 187 (342)
T PF04958_consen 156 RFADRVIAELRGVSDEDGRSPFWDALGRHFFD 187 (342)
T ss_dssp GS-SEEEEE--B---TT---HHHHHTGGGTS-
T ss_pred hcchheeeeccCCcCCCCCCchHHHhhccccC
Confidence 334566666321 112344799998866544
No 85
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=98.21 E-value=0.00029 Score=43.31 Aligned_cols=98 Identities=10% Similarity=0.182 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHhhhcCCCh------hhHHHHHHHHhcCCc----eEEEEEE--CCeEEEEEEEeec-------CCCeEEE
Q 042035 18 TNVVDEIVKMEKKIFPKHE------PLARSFDEELKKKNS----GLLYIQI--HGQVVGYVMYAWP-------TSLSASI 78 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~--~~~~vG~~~~~~~-------~~~~~~i 78 (158)
...+.++..+..+.|-.+. ..+.++..+....+. ..+.+.. ++++|||+..-+. .....+|
T Consensus 34 ~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eI 113 (162)
T PF01233_consen 34 DEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEI 113 (162)
T ss_dssp HHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeE
Confidence 4577888999888885432 223455555544332 2444443 7999999987531 1246789
Q ss_pred EEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEE
Q 042035 79 TKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLH 115 (158)
Q Consensus 79 ~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~ 115 (158)
..++||+.+|.++++-.|++.+...+...|+-....+
T Consensus 114 NFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAvyT 150 (162)
T PF01233_consen 114 NFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAVYT 150 (162)
T ss_dssp EEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred EEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeeeee
Confidence 9999999999999999999999999988886544433
No 86
>PRK10456 arginine succinyltransferase; Provisional
Probab=97.93 E-value=0.00025 Score=49.12 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=71.8
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhc------CCChh-hHHHHHH---HH----h-cCCceEEEEEE--CCeEEEEEE
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIF------PKHEP-LARSFDE---EL----K-KKNSGLLYIQI--HGQVVGYVM 67 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~---~~----~-~~~~~~~~~~~--~~~~vG~~~ 67 (158)
+.|||++.. |++.+.++-...= |.... +...+.. .+ . .+..+.|+.++ .|++||++.
T Consensus 2 ~vvRpv~~~------Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~ 75 (344)
T PRK10456 2 MVIRPVERS------DLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICA 75 (344)
T ss_pred eEEecCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEe
Confidence 679999999 7888888766542 22221 1111111 11 1 12334455554 689999998
Q ss_pred Eee------------------------------------cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHH---HhCC
Q 042035 68 YAW------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAAIKKC---RTRT 108 (158)
Q Consensus 68 ~~~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~---~~~g 108 (158)
+.. ......++..++++|+||+.|.|+.|-+.-.-.+ .++=
T Consensus 76 I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFiA~~~erF 155 (344)
T PRK10456 76 IEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKF 155 (344)
T ss_pred EEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhh
Confidence 740 1123568999999999999999998876543332 2222
Q ss_pred ccEEEEEEc--CCChhhHHHHHhCCCEEee
Q 042035 109 VLRITLHVD--PFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 109 ~~~i~~~~~--~~n~~~~~~y~~~Gf~~~~ 136 (158)
.++|..... .+-...-.||+.+|=+..+
T Consensus 156 ~~~viAEmRG~~De~G~SPFWd~lg~hFF~ 185 (344)
T PRK10456 156 NDKVVAEMRGVIDEHGYSPFWQSLGKRFFS 185 (344)
T ss_pred hhhhheeccCccCCCCCCccHHHhhccccC
Confidence 334443321 1112223577777755443
No 87
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.87 E-value=0.00035 Score=39.81 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=51.6
Q ss_pred eEEEEEECCeEEEEEEEeecC--CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChh
Q 042035 52 GLLYIQIHGQVVGYVMYAWPT--SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTP 122 (158)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~--~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~ 122 (158)
..+.++.++...|++.+.++. ....++..+.|.|..||.|+|..++..+.+. ...+...+.+.|+.
T Consensus 9 ~~~~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-----~~~L~Wrsr~~n~~ 76 (99)
T cd04264 9 RLHAIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD-----FPKLFWRSRKTNPI 76 (99)
T ss_pred cceEEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCcc
Confidence 345566678888888887544 4788999999999999999999999887664 35677777766653
No 88
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=97.86 E-value=0.0015 Score=38.65 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=72.6
Q ss_pred CCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhC-CccEEEEEEcCCChhhHHHH
Q 042035 49 KNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPFRTPAVNLY 127 (158)
Q Consensus 49 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y 127 (158)
.+..++-+.+++.++|++.+....+...+...++ +|++|| ++...-.....|..+. .+..+...+...-+-.+-..
T Consensus 36 ~~~~Y~gVyeg~~l~Gi~~v~~i~~~~vecHa~y-~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic 112 (151)
T PF11039_consen 36 PDQLYLGVYEGGQLGGIVYVEEIQPSVVECHAMY-DPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVIC 112 (151)
T ss_pred CccEEEEEEeceEEEEEEEEEEEeeeeEEEEeee-ccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHh
Confidence 4556777888999999999986666666666554 899998 8888888888887654 45544444555555566677
Q ss_pred HhCCCEEeeeeccccccCCcceEE
Q 042035 128 KKFGFQVDALIQGYYSADRPAYRM 151 (158)
Q Consensus 128 ~~~Gf~~~~~~~~~~~~~~~~~~m 151 (158)
+-+|.+.+|.+.+++....+.-++
T Consensus 113 ~llg~~RVG~id~~~~g~~~vTlY 136 (151)
T PF11039_consen 113 RLLGARRVGHIDDYFKGVDGVTLY 136 (151)
T ss_pred hhhCCceeeeHHHHhcCCCceEEE
Confidence 889999999999988644443333
No 89
>PRK14852 hypothetical protein; Provisional
Probab=97.85 E-value=0.00025 Score=55.43 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=92.5
Q ss_pred hhHHHHHHHHhhhcC-----CChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecC---------------------
Q 042035 19 NVVDEIVKMEKKIFP-----KHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPT--------------------- 72 (158)
Q Consensus 19 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--------------------- 72 (158)
++..++..+..+.|. .+.+....+-.+...+....|++...++++|.+.+..+.
T Consensus 38 ~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~ 117 (989)
T PRK14852 38 DEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQ 117 (989)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHc
Confidence 367777777666542 122211111111222334456665667777777664221
Q ss_pred -CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHh-CCCEEeeeeccccccCCcceE
Q 042035 73 -SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKK-FGFQVDALIQGYYSADRPAYR 150 (158)
Q Consensus 73 -~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~~~~~~~~~~~~~ 150 (158)
...+++..++++|+.|.+-+--.+++.+..++...+++.+.+.|.+.+ ..||++ +||+..+..+.|-.-+.+++.
T Consensus 118 Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH---~~FY~r~l~f~~ig~~r~~p~VnaPAvl 194 (989)
T PRK14852 118 GRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKH---VKFYTDIFLFKPFGEVRHYDTVDAPAVA 194 (989)
T ss_pred CCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcch---HHHHHHHhCCccccccccCCCCCcchhh
Confidence 235789999999988887777788888888887779999999987765 679985 999999988777666778888
Q ss_pred EEeecc
Q 042035 151 MYMDFD 156 (158)
Q Consensus 151 m~~~l~ 156 (158)
|+.+++
T Consensus 195 l~~dl~ 200 (989)
T PRK14852 195 LRIDLH 200 (989)
T ss_pred eecCHH
Confidence 888774
No 90
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=97.82 E-value=0.0018 Score=38.72 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=58.4
Q ss_pred HHHHHHHHhcC--CceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEE
Q 042035 39 ARSFDEELKKK--NSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHV 116 (158)
Q Consensus 39 ~~~~~~~~~~~--~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~ 116 (158)
...+...+.+. ....+-...+|++||+..+...++....+. .+-+|++..+.+|+..+-.-+++|++.|.+.+++.-
T Consensus 25 ~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~glSaVY-~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLGY 103 (128)
T PF04377_consen 25 QEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDGLSAVY-TFYDPDYSKRSLGTYSILREIELARELGLPYYYLGY 103 (128)
T ss_pred HHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccchhhhee-eeeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeCe
Confidence 44555555543 334455556999999999875555444454 455999999999999999999999999999998873
Q ss_pred c
Q 042035 117 D 117 (158)
Q Consensus 117 ~ 117 (158)
.
T Consensus 104 ~ 104 (128)
T PF04377_consen 104 W 104 (128)
T ss_pred E
Confidence 3
No 91
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.78 E-value=0.00066 Score=46.92 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=71.0
Q ss_pred cccccccCCccchhhHHHHHHHHhhh------cCCChh-hH-------HHHHHHHh--cCCceEEEEEE--CCeEEEEEE
Q 042035 6 AVTELQRNSTNWTNVVDEIVKMEKKI------FPKHEP-LA-------RSFDEELK--KKNSGLLYIQI--HGQVVGYVM 67 (158)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~-------~~~~~~~~--~~~~~~~~~~~--~~~~vG~~~ 67 (158)
.|||++.. |++.+.++-... .|.... +. ..+..... .+..+.++.++ .|++||++.
T Consensus 1 viRpv~~~------Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~ 74 (336)
T TIGR03245 1 IVRPSRFA------DLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSS 74 (336)
T ss_pred CcccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEe
Confidence 37888888 788887776654 232221 11 12211111 12334555554 689999998
Q ss_pred Eee------------------------------------cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHH---HhCC
Q 042035 68 YAW------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAAIKKC---RTRT 108 (158)
Q Consensus 68 ~~~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~---~~~g 108 (158)
+.. ......++..++++|+||+.|.|+.|-+.-.-.+ .++=
T Consensus 75 I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFiA~~~erF 154 (336)
T TIGR03245 75 IVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFMAAHRERF 154 (336)
T ss_pred EEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhh
Confidence 740 1123578999999999999999998877543332 2332
Q ss_pred ccEEEEEEcC--CChhhHHHHHhCCCEEee
Q 042035 109 VLRITLHVDP--FRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 109 ~~~i~~~~~~--~n~~~~~~y~~~Gf~~~~ 136 (158)
.++|...... +-..--.||+.+|=+..+
T Consensus 155 ~~~viAEmrG~~De~G~SPFWd~lg~hFF~ 184 (336)
T TIGR03245 155 QSRIIVEIQGVQDDNGDSPFWDAIGRHFFD 184 (336)
T ss_pred hhhheeeccCccCCCCCCccHHHhhccccC
Confidence 3444444221 112223577777765544
No 92
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.75 E-value=0.00078 Score=46.61 Aligned_cols=89 Identities=17% Similarity=0.321 Sum_probs=55.3
Q ss_pred ccccccCCccchhhHHHHHHHHhhh------cCCChh-hHHHHHH---HH----h-cCCceEEEEEE--CCeEEEEEEEe
Q 042035 7 VTELQRNSTNWTNVVDEIVKMEKKI------FPKHEP-LARSFDE---EL----K-KKNSGLLYIQI--HGQVVGYVMYA 69 (158)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~---~~----~-~~~~~~~~~~~--~~~~vG~~~~~ 69 (158)
|||++.. |++.+.++-... .|.... +...+.. .+ . .+..+.|+.++ .|++||++.+.
T Consensus 2 vRPv~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~ 75 (336)
T TIGR03244 2 VRPVETS------DLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIE 75 (336)
T ss_pred cccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEE
Confidence 7888888 788887776654 222221 1111111 11 1 12334455554 58999999874
Q ss_pred e------------------------------------cCCCeEEEEEEEeccCccCCcHHHHHHHHHH
Q 042035 70 W------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAAI 101 (158)
Q Consensus 70 ~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~ 101 (158)
. ......++..++++|+||+.|.|+.|-+.-.
T Consensus 76 a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~Rf 143 (336)
T TIGR03244 76 AAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRF 143 (336)
T ss_pred ecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHH
Confidence 0 1123578999999999999999998876543
No 93
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.74 E-value=8.8e-05 Score=39.19 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=26.5
Q ss_pred eEEEEEEEeccCccCCcHHHHHHHHHHHHH
Q 042035 75 SASITKLAVKENYRGQGHGEALLEAAIKKC 104 (158)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~ 104 (158)
.+.|..+.|+|.+|++|||+.|++.+....
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 467889999999999999999999887764
No 94
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.72 E-value=0.00094 Score=46.17 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=71.4
Q ss_pred cccccccCCccchhhHHHHHHHHhhh------cCCChh-h-------HHHHHHHHhc-CCceEEEEEE--CCeEEEEEEE
Q 042035 6 AVTELQRNSTNWTNVVDEIVKMEKKI------FPKHEP-L-------ARSFDEELKK-KNSGLLYIQI--HGQVVGYVMY 68 (158)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~-------~~~~~~~~~~-~~~~~~~~~~--~~~~vG~~~~ 68 (158)
.|||++.. |++.+.++-... .|.... + ...+...... +..+.|+.++ .|++||++.+
T Consensus 1 vvRpv~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I 74 (335)
T TIGR03243 1 IVRPVRTS------DLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAI 74 (335)
T ss_pred CcccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeE
Confidence 37888888 788887776654 232221 1 1122111111 2334455554 6899999987
Q ss_pred ee------------------------------------cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHH---HhCCc
Q 042035 69 AW------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAAIKKC---RTRTV 109 (158)
Q Consensus 69 ~~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~---~~~g~ 109 (158)
.. ......++..++++|+||+.|.|+.|-+.-.-.+ .++=.
T Consensus 75 ~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~ 154 (335)
T TIGR03243 75 EAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAAFRERFG 154 (335)
T ss_pred EecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHHHhhHhhhh
Confidence 40 1123578999999999999999998877543332 23323
Q ss_pred cEEEEEEcC--CChhhHHHHHhCCCEEee
Q 042035 110 LRITLHVDP--FRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 110 ~~i~~~~~~--~n~~~~~~y~~~Gf~~~~ 136 (158)
++|...... +-..--.||+.+|-+..+
T Consensus 155 ~~viAEmrG~~De~G~SPFWd~lg~hFF~ 183 (335)
T TIGR03243 155 DKIIAEMRGVSDEQGRSPFWEALGRHFFS 183 (335)
T ss_pred hhheeeccCccCCCCCCccHHHhhccccC
Confidence 444444221 112223578777766544
No 95
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.69 E-value=0.0013 Score=38.45 Aligned_cols=71 Identities=21% Similarity=0.402 Sum_probs=48.7
Q ss_pred CeEEEEEEEee-------cCC------CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHH
Q 042035 60 GQVVGYVMYAW-------PTS------LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNL 126 (158)
Q Consensus 60 ~~~vG~~~~~~-------~~~------~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~ 126 (158)
+.++|++-+.. ... +...+..++|++..|++|+|+.|.+.++..- ++.--.+.++...+..++|
T Consensus 18 g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e---~~~p~~~a~DrPS~Kll~F 94 (120)
T PF05301_consen 18 GAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQEE---NVSPHQLAIDRPSPKLLSF 94 (120)
T ss_pred ceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHHc---CCCcccceecCCcHHHHHH
Confidence 56889886542 111 1225678999999999999999999877643 3444456666677777887
Q ss_pred HHh-CCCE
Q 042035 127 YKK-FGFQ 133 (158)
Q Consensus 127 y~~-~Gf~ 133 (158)
.+| .|-+
T Consensus 95 l~Khy~L~ 102 (120)
T PF05301_consen 95 LKKHYGLQ 102 (120)
T ss_pred HHHhcCCC
Confidence 765 4443
No 96
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.67 E-value=8.8e-05 Score=52.85 Aligned_cols=50 Identities=24% Similarity=0.470 Sum_probs=44.6
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
...||.+|+|+.|++.++..|++.+..++.+. +-..+...|+|+||+..|
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~vi---SgiG~ReYy~k~GY~~~g 508 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVI---SGIGVREYYRKLGYELDG 508 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEE---ecccHHHHHHHhCccccC
Confidence 46799999999999999999999998888877 456789999999999887
No 97
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.64 E-value=0.00097 Score=38.00 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=48.4
Q ss_pred EEEEEECCeEEEEEEEeecC-CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChh
Q 042035 53 LLYIQIHGQVVGYVMYAWPT-SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTP 122 (158)
Q Consensus 53 ~~~~~~~~~~vG~~~~~~~~-~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~ 122 (158)
.+.++.++..=|++.+.++. +...++..+.|.|..||.|+|..+++.+.+. ...+...+.+.|+.
T Consensus 11 ~~~~y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d-----~~~L~Wrsr~~n~~ 76 (99)
T cd04265 11 LHTIYLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRD-----FPKLFWRSRSTNPI 76 (99)
T ss_pred ceEEEEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCcc
Confidence 44555566676777776433 4788999999999999999999999887665 34567777766653
No 98
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.63 E-value=0.00031 Score=47.60 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccccccCCcceEEEeeccC
Q 042035 91 GHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYYSADRPAYRMYMDFDS 157 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~~ 157 (158)
+-...|+..+.+.|++.|+.+|.+.+...+ ..+|++.||...+.++.||.. ++.++|.+.|++
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~~~f~g-~~~~~~~~~~~~ 83 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSD---KPLFEERGYLEEAKIPGYFNG-HDAYFMSKYLDE 83 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHH---HHHHHHCCCeEEEecccccCC-CceEEEEEcCch
Confidence 447789999999999999999999987764 789999999999999998855 789999998864
No 99
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=97.54 E-value=0.0086 Score=39.86 Aligned_cols=79 Identities=9% Similarity=0.026 Sum_probs=58.7
Q ss_pred HHHHHHHHhcC--CceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEE
Q 042035 39 ARSFDEELKKK--NSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHV 116 (158)
Q Consensus 39 ~~~~~~~~~~~--~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~ 116 (158)
...+...+.+. ....+-...+|++||.+++....+....+. .+-+|++..+++|+..+-.-+++|++.|...+++.-
T Consensus 130 ~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d~lSAVY-~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YLGY 208 (240)
T PRK01305 130 RDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDDGLSAVY-TFYDPDEEHRSLGTFAILWQIELAKRLGLPYVYLGY 208 (240)
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCCceeeEE-EeeCCCccccCCHHHHHHHHHHHHHHcCCCeEeeeE
Confidence 34455555443 223444456999999999986555555554 566999999999999999999999999999999884
Q ss_pred cC
Q 042035 117 DP 118 (158)
Q Consensus 117 ~~ 118 (158)
.-
T Consensus 209 ~I 210 (240)
T PRK01305 209 WI 210 (240)
T ss_pred EE
Confidence 44
No 100
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=97.54 E-value=0.0041 Score=43.51 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=68.7
Q ss_pred CceEEEEE-ECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHH
Q 042035 50 NSGLLYIQ-IHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYK 128 (158)
Q Consensus 50 ~~~~~~~~-~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~ 128 (158)
...++++. .+|++||.+.+... .+.......+.++++++.+-+..|.-+++++|.++|+..+-+.....+....+|=+
T Consensus 194 ~~~l~~a~~~~g~~va~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~ 272 (330)
T TIGR03019 194 DCEVLTVRLGDGVVASAVLSFYF-RDEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKK 272 (330)
T ss_pred CEEEEEEEeCCCCEEEEEEEEEe-CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHh
Confidence 34456666 58999987766533 33343334567899999999999999999999999999998876555666677778
Q ss_pred hCCCEEeeeeccccc
Q 042035 129 KFGFQVDALIQGYYS 143 (158)
Q Consensus 129 ~~Gf~~~~~~~~~~~ 143 (158)
+.||+.....-.++.
T Consensus 273 ~~G~~~~~l~~~~~~ 287 (330)
T TIGR03019 273 NWGFEPQPLHYEYLL 287 (330)
T ss_pred cCCCeeccceEEEEc
Confidence 899998775544443
No 101
>PHA01733 hypothetical protein
Probab=97.43 E-value=0.00082 Score=40.98 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=51.6
Q ss_pred EEEEECCeEEEEEEEeec-CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHH-hCCccEEEEEEcCCChhhHHHHHhCC
Q 042035 54 LYIQIHGQVVGYVMYAWP-TSLSASITKLAVKENYRGQGHGEALLEAAIKKCR-TRTVLRITLHVDPFRTPAVNLYKKFG 131 (158)
Q Consensus 54 ~~~~~~~~~vG~~~~~~~-~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~-~~g~~~i~~~~~~~n~~~~~~y~~~G 131 (158)
+.+..+|+++|..+.... .++.+....++.+.=.| +-...+..+..+.. ...+..++=.|+..|..+++|.+.+|
T Consensus 50 ~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lG 126 (153)
T PHA01733 50 AFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTPAIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLG 126 (153)
T ss_pred EEEecCCcEEEEecccccccCCCCceeEEecHHhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcC
Confidence 555568999999988741 12223333233222222 33444555544443 33567777679999999999999999
Q ss_pred CEEeeee
Q 042035 132 FQVDALI 138 (158)
Q Consensus 132 f~~~~~~ 138 (158)
|+.....
T Consensus 127 F~f~~~~ 133 (153)
T PHA01733 127 FKGLRYV 133 (153)
T ss_pred ceeeccc
Confidence 9988744
No 102
>PHA00432 internal virion protein A
Probab=97.41 E-value=0.002 Score=38.72 Aligned_cols=85 Identities=11% Similarity=-0.071 Sum_probs=51.6
Q ss_pred CceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccC-ccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHH
Q 042035 50 NSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKEN-YRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYK 128 (158)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~-~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~ 128 (158)
+..++....+|++++..+- .....+.++.-.|..- -..+-=..+++....+.+.+ .+..+.=.|...|..+++|.+
T Consensus 36 s~~~~~~~~~G~~~aI~Gn--~G~~vW~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~-~yp~LwNyV~~~N~~hir~Lk 112 (137)
T PHA00432 36 DSECVTLSLDGFVLAIGGN--QGDQVWFVTSDQVWRLTKKEKREFRKLIMEYRDMMLD-QYPSLWNYVWVGNKSHIRFLK 112 (137)
T ss_pred CceEEEEecCCeEEEEecC--CCCceEEEecHHhhhCChhhhHHHHHHHHHHHHHHHH-hhhhhheeeecCCHHHHHHHH
Confidence 4457777779999887741 2333344443333221 00112222333333344333 367777779999999999999
Q ss_pred hCCCEEeee
Q 042035 129 KFGFQVDAL 137 (158)
Q Consensus 129 ~~Gf~~~~~ 137 (158)
.+||+....
T Consensus 113 ~lGf~f~~e 121 (137)
T PHA00432 113 SIGAVFHNE 121 (137)
T ss_pred HcCeeeecc
Confidence 999999875
No 103
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=97.37 E-value=0.0021 Score=40.80 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=37.2
Q ss_pred eEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCC
Q 042035 61 QVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (158)
Q Consensus 61 ~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g 108 (158)
.+||+..-........-+.++.|.|.||++|+|+.|++..-..++..|
T Consensus 66 h~vGyFSKEk~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKESWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS-TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEecccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 488988876444455678899999999999999999999888877665
No 104
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.09 E-value=0.001 Score=46.01 Aligned_cols=49 Identities=27% Similarity=0.463 Sum_probs=40.7
Q ss_pred CccCCcHHHHHHHHHHHHHHhC-CccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 86 NYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 86 ~~r~~Gig~~l~~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
.||.+|+|+.|++.++..|++. |..++.+. +-....+.|+|+||+..|-
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavI---SGVGtR~YY~klGY~LdGP 547 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVI---SGVGTRNYYRKLGYELDGP 547 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEE---eccchHHHHHhhCeeecCh
Confidence 4999999999999999999765 77777766 3345678999999998873
No 105
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=96.97 E-value=0.0056 Score=41.41 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=38.6
Q ss_pred CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCC
Q 042035 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (158)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g 108 (158)
+..+||+..-........-+.++.|.|.||++|+|+.|++..-...+..|
T Consensus 139 g~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 139 GSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 44689988765333334557889999999999999999998887776654
No 106
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.94 E-value=0.0063 Score=46.16 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=56.2
Q ss_pred eEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCC--cc-----------EE-----------------------------
Q 042035 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRT--VL-----------RI----------------------------- 112 (158)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g--~~-----------~i----------------------------- 112 (158)
.+.|..++|||+|++.|+|++.++.+.++...+. +. ++
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er 693 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSER 693 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccC
Confidence 3678899999999999999999999988864332 11 00
Q ss_pred ------EEEEc-CCChhhHHHHHhCCCEEeeeeccccc-cCCcceEEEeeccC
Q 042035 113 ------TLHVD-PFRTPAVNLYKKFGFQVDALIQGYYS-ADRPAYRMYMDFDS 157 (158)
Q Consensus 113 ------~~~~~-~~n~~~~~~y~~~Gf~~~~~~~~~~~-~~~~~~~m~~~l~~ 157 (158)
++.+. .-.+...+||++.||.+....+..-. -+++..+|-+.|.+
T Consensus 694 ~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~lTGEHtcimLk~L~~ 746 (1011)
T KOG2036|consen 694 PPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSNDLTGEHTCIMLKTLEG 746 (1011)
T ss_pred CCcccceeeecccCCHHHHHHHHhcCceeEEeeccccccccceeEEEEecCCC
Confidence 00110 01234579999999999886554322 35677888877753
No 107
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=96.84 E-value=0.065 Score=37.04 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=45.5
Q ss_pred CCceEEEEEE-CCeEEEEEEEeecC-CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 49 KNSGLLYIQI-HGQVVGYVMYAWPT-SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 49 ~~~~~~~~~~-~~~~vG~~~~~~~~-~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
.+...+++.. +|+++|++.+.+.. .+.+.+...--+|+ -=+|+-..|+..++..+++.|++.+.+...
T Consensus 178 ~~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~a 247 (299)
T PF09924_consen 178 LGLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGFA 247 (299)
T ss_dssp HT-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE----
T ss_pred cCceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEcccc
Confidence 3667788888 99999999998655 45555555555666 456999999999999999889998885533
No 108
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=96.66 E-value=0.01 Score=34.07 Aligned_cols=49 Identities=29% Similarity=0.312 Sum_probs=35.7
Q ss_pred CCceEEEEEECCe-EEEEEEEeec-----------------------CCCeEEEEEEEeccCccCCcHHHHHH
Q 042035 49 KNSGLLYIQIHGQ-VVGYVMYAWP-----------------------TSLSASITKLAVKENYRGQGHGEALL 97 (158)
Q Consensus 49 ~~~~~~~~~~~~~-~vG~~~~~~~-----------------------~~~~~~i~~~~v~~~~r~~Gig~~l~ 97 (158)
.....+++..+++ +||++.+..+ ....++++.++|+|+||++.....|+
T Consensus 28 ~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 28 EHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 4455566666555 9999987521 12568999999999999998887765
No 109
>PLN03239 histone acetyltransferase; Provisional
Probab=96.56 E-value=0.012 Score=41.04 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=37.7
Q ss_pred CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCC
Q 042035 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (158)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g 108 (158)
+-.+||+..-........-+.++.|.|.||++|+|+.|++..-...+..|
T Consensus 197 g~h~vGYFSKEK~s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 197 GFHPVGYYSKEKYSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEEeeecccCCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 34588887765333334468889999999999999999998877776554
No 110
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=96.54 E-value=0.03 Score=39.09 Aligned_cols=92 Identities=9% Similarity=0.111 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHhhhcCCChh------hHHHHHHHHhcCC----ceEEEEEE--CCeEEEEEEEee-------cCCCeEE
Q 042035 17 WTNVVDEIVKMEKKIFPKHEP------LARSFDEELKKKN----SGLLYIQI--HGQVVGYVMYAW-------PTSLSAS 77 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~--~~~~vG~~~~~~-------~~~~~~~ 77 (158)
...++.++..+..+.+-.+.. ...++..+..+.+ ..++.+.. .+++|||+...+ ...+..+
T Consensus 90 ~~~~l~el~~lL~enyVEd~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~ve 169 (421)
T KOG2779|consen 90 DFKDLEELYNLLNENYVEDDDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVE 169 (421)
T ss_pred cHhHHHHHHhhcccCCCCccccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeee
Confidence 445677777777777644321 1234444544432 12333333 679999997652 1225788
Q ss_pred EEEEEeccCccCCcHHHHHHHHHHHHHHhCC
Q 042035 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (158)
Q Consensus 78 i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g 108 (158)
|..++||...|+|+++--|++.+-..+.-.|
T Consensus 170 INFLCVHKkLRSKRlaPvLIrEITRRvnl~g 200 (421)
T KOG2779|consen 170 INFLCVHKKLRSKRLAPVLIREITRRVNLEG 200 (421)
T ss_pred EEEEEEehhhhccccccHHHHHHHHHhhhhh
Confidence 9999999999999999999999988876554
No 111
>PTZ00064 histone acetyltransferase; Provisional
Probab=96.53 E-value=0.0099 Score=43.24 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=38.6
Q ss_pred CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCC
Q 042035 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (158)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g 108 (158)
+-.+|||..-........-+.++.|.|.||++|+|+.|+...-...+..|
T Consensus 368 G~HiVGYFSKEK~S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 368 GCHIVGYFSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred CcEEEEEecccccCcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 34788988765333344568889999999999999999998877776554
No 112
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=96.23 E-value=0.033 Score=37.72 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=53.3
Q ss_pred CcccccccCCccchhhHHHHHHHHhhh---c---CCChh-hH-------HHHHHHHhcC-CceEEEEEE--CCeEEEEEE
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKI---F---PKHEP-LA-------RSFDEELKKK-NSGLLYIQI--HGQVVGYVM 67 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-~~-------~~~~~~~~~~-~~~~~~~~~--~~~~vG~~~ 67 (158)
+.+||++.. |++.+.++-... + |.... +. ..|....... ....++..+ .|+++|+..
T Consensus 2 lvvRP~~~a------Dl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~sa 75 (336)
T COG3138 2 LVVRPVERA------DLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISA 75 (336)
T ss_pred ccccccccc------CHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEE
Confidence 568999999 888888886654 2 22221 11 1122211122 334455555 699999987
Q ss_pred Eee------------------------------------cCCCeEEEEEEEeccCccCCcHHHHHHH
Q 042035 68 YAW------------------------------------PTSLSASITKLAVKENYRGQGHGEALLE 98 (158)
Q Consensus 68 ~~~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~l~~ 98 (158)
+.. .-....++..++++|++|.-+-|+.|-+
T Consensus 76 I~a~vGl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 76 IEAAVGLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred EEEeeccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 630 0012457788999999998888876654
No 113
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=96.16 E-value=0.011 Score=42.64 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCC
Q 042035 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (158)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g 108 (158)
+-.+|||..-........-+.++.|.|.||++|+|+.|+...-+..+..|
T Consensus 290 g~h~vGyFSKEk~s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 290 GCHMVGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred CcEEEEEecccccCcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 44789988765333334568889999999999999999988776665544
No 114
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=95.98 E-value=0.14 Score=29.72 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=45.9
Q ss_pred EEEEEECCeEEEEEEEeecC------CCeEEEEEEEeccCccC-CcHHHHHHHHHHHHHHhCCccE-EEEEEcCCChh
Q 042035 53 LLYIQIHGQVVGYVMYAWPT------SLSASITKLAVKENYRG-QGHGEALLEAAIKKCRTRTVLR-ITLHVDPFRTP 122 (158)
Q Consensus 53 ~~~~~~~~~~vG~~~~~~~~------~~~~~i~~~~v~~~~r~-~Gig~~l~~~~~~~~~~~g~~~-i~~~~~~~n~~ 122 (158)
.+.++.++..=|.+++..+. ....++..+.|.+..|| .|++..+.+.+.+ .... +...+.+.|+.
T Consensus 11 ~~~~y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrsr~~n~~ 83 (108)
T cd04266 11 LATVIIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRSRKDNPV 83 (108)
T ss_pred ccEEEEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEeCCCCcc
Confidence 33444456666666665432 46789999999999997 8999999988776 2443 67777766654
No 115
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.11 Score=34.14 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=45.6
Q ss_pred CeEEEEEEEee------------cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHH
Q 042035 60 GQVVGYVMYAW------------PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLY 127 (158)
Q Consensus 60 ~~~vG~~~~~~------------~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y 127 (158)
+.+.|++-+.. .......|..++||+.-|+.|.|.+|++.+++. .+..--.+.++......+.|.
T Consensus 81 s~l~GllKVG~KkLfl~D~~~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~k---E~vephQ~a~DrPS~kLl~Fm 157 (264)
T KOG4601|consen 81 SILKGLLKVGYKKLFLTDNEQNQYEEEALCILDFYVHESEQRSGNGFKLFDYMLKK---ENVEPHQCAFDRPSAKLLQFM 157 (264)
T ss_pred hheeeeehccceeEEEeccHhhhhccCCceEEEEEeehhhhhcCchHHHHHHHHHh---cCCCchheeccChHHHHHHHH
Confidence 45778875542 112456788899999999999999998887653 344444455554444556665
Q ss_pred Hh-CCC
Q 042035 128 KK-FGF 132 (158)
Q Consensus 128 ~~-~Gf 132 (158)
+| .|-
T Consensus 158 ~khYgl 163 (264)
T KOG4601|consen 158 EKHYGL 163 (264)
T ss_pred HHhcCc
Confidence 43 443
No 116
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=95.61 E-value=0.26 Score=29.97 Aligned_cols=85 Identities=19% Similarity=0.340 Sum_probs=53.3
Q ss_pred CCceEEEEE-ECCeEEEEEEEe--ecCC-CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhH
Q 042035 49 KNSGLLYIQ-IHGQVVGYVMYA--WPTS-LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAV 124 (158)
Q Consensus 49 ~~~~~~~~~-~~~~~vG~~~~~--~~~~-~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~ 124 (158)
...+.|++. .++.+.||+... |..+ .+..+..+.+. +-+......-|+.++.+-|.+.|+-.+.+..++ ...
T Consensus 53 RsgHSFvA~~e~~~~~GfvLAQaVWQGdrptVlV~ri~~~-~~~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~ 128 (161)
T PF09390_consen 53 RSGHSFVAEDEGGELQGFVLAQAVWQGDRPTVLVRRILLA-PGEPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELE 128 (161)
T ss_dssp CCS--EEEE-ETTEEEEEEEEEEEE-SSSEEEEEEEE----EESSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHH
T ss_pred ccCCcEEEEccCCceeeeeehhHHhcCCCceEEEEEeecC-CCCcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHH
Confidence 456667777 799999999765 3343 44555555544 446668888999999999999999999988766 566
Q ss_pred HHHHhCCCEEeee
Q 042035 125 NLYKKFGFQVDAL 137 (158)
Q Consensus 125 ~~y~~~Gf~~~~~ 137 (158)
...+.-||...+.
T Consensus 129 ~A~~a~~~~~~~~ 141 (161)
T PF09390_consen 129 AAARAEGFRLGGQ 141 (161)
T ss_dssp HHHHHTT----S-
T ss_pred HHHhhcccccCCe
Confidence 6778888887763
No 117
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=95.50 E-value=0.33 Score=30.76 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=64.6
Q ss_pred hhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEee----cCCCeEEEEEEEeccCccCCcHHH
Q 042035 19 NVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAW----PTSLSASITKLAVKENYRGQGHGE 94 (158)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~----~~~~~~~i~~~~v~~~~r~~Gig~ 94 (158)
.+...+..+..+.|..... .+.+...+..... .++.++..-|.+++.+ ......++..+.|.|..||.|++.
T Consensus 32 ~d~~kL~~ll~~sf~~~~~-v~~yl~~l~~~~~---~iy~d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D 107 (170)
T PF04768_consen 32 VDLDKLRALLERSFGGKLD-VDHYLDRLNNRLF---KIYVDEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVAD 107 (170)
T ss_dssp S-HHHHHHHHHHHSTSSSB-HTTHHHHHHTS-S---EEEEETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHH
T ss_pred CCHHHHHHHHHhccccccc-HHHHHHHhhccce---EEEEeCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHH
Confidence 3677888888888833222 3455555544322 2223444555555533 234589999999999999999999
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHH--HhCCCEE
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLY--KKFGFQV 134 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y--~~~Gf~~ 134 (158)
.+.+.+.+. ...+.+.+.+.|+ ..++| +.-|+-.
T Consensus 108 ~vf~~i~~d-----~p~L~Wrsr~~n~-~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 108 NVFNAIRKD-----FPKLFWRSREDNP-NNKWYFERSDGSFK 143 (170)
T ss_dssp HHHHHHHHH------SSEEEEEETT-T-THHHHHHH-SEEEE
T ss_pred HHHHHHHHh-----ccceEEEecCCCC-cccEEEEeeEEEEE
Confidence 999888553 3446777777665 45666 3456544
No 118
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=95.32 E-value=0.056 Score=33.85 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHhhhcCCChhhH----HHHHHHHhcCCceEEEEEECCeEEEEEEEee-------cCCCeEEEEEEEeccC
Q 042035 18 TNVVDEIVKMEKKIFPKHEPLA----RSFDEELKKKNSGLLYIQIHGQVVGYVMYAW-------PTSLSASITKLAVKEN 86 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~-------~~~~~~~i~~~~v~~~ 86 (158)
+.|-.++.++....|++.-.+. +--.++.-..+..-.+.++...+++.+++-+ .+--.++++-..|+|+
T Consensus 17 l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgyD~~GvaAH~G~LRRFIkVG~vDlLVaElGLygVRpD 96 (196)
T PF02474_consen 17 LADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGYDSRGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPD 96 (196)
T ss_pred hhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEeecCchHHHHHHHHHHHhccCCcceeEEEEEEEEeecc
Confidence 3477788888888887643221 1111222234555667777766666665431 1223678999999999
Q ss_pred ccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCC---C-------EEeeeecccccc-----CCcceEE
Q 042035 87 YRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFG---F-------QVDALIQGYYSA-----DRPAYRM 151 (158)
Q Consensus 87 ~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~G---f-------~~~~~~~~~~~~-----~~~~~~m 151 (158)
.+|.||+..+ ..+.-..++.|+.....+|.. +..+.+++++ . ++-.+..+.+.+ -+|.+.+
T Consensus 97 LEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~---al~~Hv~R~~R~gl~ti~~gvrVRSTlpdv~~dlppTr~ed~lv~ 172 (196)
T PF02474_consen 97 LEGLGISHSM-RVMYPVLQELGVPFGFGTVRH---ALRNHVERLCRNGLATILSGVRVRSTLPDVYLDLPPTRIEDVLVV 172 (196)
T ss_pred ccccccchhh-hhhhhHHHhcCCCeecccchH---HHHHHHHHHhccchhhcccCceeeccCccccCCCCCcccccceEE
Confidence 9999999865 577777888898887777654 4566666654 3 222233333322 1377777
Q ss_pred EeeccC
Q 042035 152 YMDFDS 157 (158)
Q Consensus 152 ~~~l~~ 157 (158)
...++.
T Consensus 173 V~Pi~r 178 (196)
T PF02474_consen 173 VLPIGR 178 (196)
T ss_pred EEcCCC
Confidence 776653
No 119
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=95.20 E-value=0.042 Score=39.04 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=26.7
Q ss_pred CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhC
Q 042035 74 LSASITKLAVKENYRGQGHGEALLEAAIKKCRTR 107 (158)
Q Consensus 74 ~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~ 107 (158)
...-+.++-|.|-||++|+|+.|++.--..-+..
T Consensus 259 ~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E 292 (396)
T KOG2747|consen 259 ENYNLACILTLPPYQRKGYGKLLIDFSYELSRRE 292 (396)
T ss_pred cccceeeeeecChhhhcccchhhhhhhhhhhccc
Confidence 3455778899999999999999998766555433
No 120
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.17 E-value=0.023 Score=40.92 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=43.6
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEE-----EcCCChhhHHHHHhCCCEEee
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLH-----VDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~-----~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+.|..+.|||+||+-|+|..-+..+.+|..++-...+.-. +-..-..-..|+++.||...-
T Consensus 242 ariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 5789999999999999999999999999987754433221 000001112689999998654
No 121
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=94.98 E-value=0.42 Score=34.73 Aligned_cols=107 Identities=14% Similarity=0.196 Sum_probs=61.4
Q ss_pred ceEEEEEEC-CeEEEEEEEee-cCCCeEEEEEEEecc--CccCCcHHHHHHHHHHHHHHhCCccEEEEEE----------
Q 042035 51 SGLLYIQIH-GQVVGYVMYAW-PTSLSASITKLAVKE--NYRGQGHGEALLEAAIKKCRTRTVLRITLHV---------- 116 (158)
Q Consensus 51 ~~~~~~~~~-~~~vG~~~~~~-~~~~~~~i~~~~v~~--~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~---------- 116 (158)
...+.+.++ ++++|.+.+.. .......+..+-=-| +|...-+-..+++.+..+++..++-.+.++.
T Consensus 35 ~~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~~ 114 (406)
T PF02388_consen 35 VERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPRGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDED 114 (406)
T ss_dssp EEEEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-TT
T ss_pred EEEEEEEeCCCeEEEEEEEEEeccCCceeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhcccc
Confidence 344555554 67776654442 222122222222235 7888888899999999999887765555441
Q ss_pred -----cCCChhhHHHHHhCCCEEeeeeccccccCCcceEEEeeccC
Q 042035 117 -----DPFRTPAVNLYKKFGFQVDALIQGYYSADRPAYRMYMDFDS 157 (158)
Q Consensus 117 -----~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~~ 157 (158)
...|...+..++++||+..+....+-....+...+.++|..
T Consensus 115 g~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~~~~qpr~~~v~dL~~ 160 (406)
T PF02388_consen 115 GEPIEGEENDELIENLKALGFRHQGFTKGYDDTIQPRWTYVKDLTG 160 (406)
T ss_dssp S-EEEE-S-THHHHHHHHTT-CCTS-SSSTTSSSS-SEEEEEEGCC
T ss_pred cccccCcchHHHHHHHHhcCceecCcccCCCcccCccEEEEEECCC
Confidence 12456778999999999988766553335577888888865
No 122
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=94.76 E-value=0.77 Score=30.72 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=52.1
Q ss_pred cchhhHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEee-------------------------
Q 042035 16 NWTNVVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAW------------------------- 70 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~------------------------- 70 (158)
.....++++..+........+....-+ .....++++.+...+||+++..+
T Consensus 101 ~~~kk~~Ev~~~VnnELg~~~~~~~~~-----~~~k~~lFIS~rk~~VGcLvaE~Is~a~~~i~~~~~~~~~~s~~~~~~ 175 (257)
T KOG3014|consen 101 AALKKVEEVMKMVNNELGYQQIENQCW-----PKIKTFLFISVRKIVVGCLVAEPISQAFRVIESPGVTDSYDSQKAWQN 175 (257)
T ss_pred HHHHHHHHHHHHHHhhcCCcccccccc-----cceeEEEEEEecceeeeEEEehhhhhhhhhccCcCcccchhhHHHhcc
Confidence 344566677776665544333211111 22334455555555899777531
Q ss_pred ---cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHH
Q 042035 71 ---PTSLSASITKLAVKENYRGQGHGEALLEAAIKKC 104 (158)
Q Consensus 71 ---~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~ 104 (158)
+.+-.+.|..+.|.+.-|++|+++.|+..+...-
T Consensus 176 s~~~~~~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~ 212 (257)
T KOG3014|consen 176 SPLPEPAICGISRIWVSSLRRRKGIASLLLDVARCNF 212 (257)
T ss_pred CCCCCCcEeeeEEEEeehhhhhhhhHHHHHHHHHHhh
Confidence 1123567889999999999999999998876554
No 123
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=94.41 E-value=0.22 Score=35.17 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=38.6
Q ss_pred EEEEEEEee----cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCCh
Q 042035 62 VVGYVMYAW----PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRT 121 (158)
Q Consensus 62 ~vG~~~~~~----~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~ 121 (158)
++|+..+.- ++.-...+..+.+.|.||++|+|+.|++.+....... -..+.+++...++
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~DiTVEdPse 262 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVLDITVEDPSE 262 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccC-CceeEEEecCchH
Confidence 455555541 2334556778999999999999999999988555432 2344555544443
No 124
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=1 Score=30.17 Aligned_cols=60 Identities=10% Similarity=-0.029 Sum_probs=49.2
Q ss_pred CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCC
Q 042035 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPF 119 (158)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~ 119 (158)
.|++|+.+......+....+. .+-+|++....+|+..+-.-+.+|++.|...+++.-...
T Consensus 159 ~G~LvAVavtDvL~dGlSsVY-~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYwI~ 218 (253)
T COG2935 159 EGKLVAVAVTDVLPDGLSSVY-TFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYWIK 218 (253)
T ss_pred CCcEEEEEeeecccCcceeEE-EEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEEEC
Confidence 799999998876555555454 556999999999999999999999999999999985443
No 125
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=94.23 E-value=0.83 Score=31.76 Aligned_cols=90 Identities=7% Similarity=0.119 Sum_probs=59.1
Q ss_pred hHHHHHHHHhhhcCCChh------hHHHHHHHHhcCCc----eEEEEEE--CCeEEEEEEEee-------cCCCeEEEEE
Q 042035 20 VVDEIVKMEKKIFPKHEP------LARSFDEELKKKNS----GLLYIQI--HGQVVGYVMYAW-------PTSLSASITK 80 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~--~~~~vG~~~~~~-------~~~~~~~i~~ 80 (158)
.+.++..+..+.+-.+.. ...++.++....+. .++.+.. ..++|||+...+ ......++..
T Consensus 91 ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~~~~~evNF 170 (451)
T COG5092 91 QLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKRSSVLEVNF 170 (451)
T ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccccccceEEE
Confidence 556666666666643321 22344444444322 2334444 358999997542 2235789999
Q ss_pred EEeccCccCCcHHHHHHHHHHHHHHhCCc
Q 042035 81 LAVKENYRGQGHGEALLEAAIKKCRTRTV 109 (158)
Q Consensus 81 ~~v~~~~r~~Gig~~l~~~~~~~~~~~g~ 109 (158)
++||.+.|++.+.-.|++.+-..+...|+
T Consensus 171 LCihk~lRsKRltPvLIkEiTRR~n~~~i 199 (451)
T COG5092 171 LCIHKELRSKRLTPVLIKEITRRANVDGI 199 (451)
T ss_pred EEEehhhhhCccchHHHHHHHHhhhhhhh
Confidence 99999999999999999999888865553
No 126
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=93.81 E-value=0.69 Score=26.42 Aligned_cols=65 Identities=9% Similarity=0.071 Sum_probs=47.8
Q ss_pred EEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChh
Q 042035 53 LLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTP 122 (158)
Q Consensus 53 ~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~ 122 (158)
.+-++.++..=|.+++..+.....++..+.|.+.-++.|++..+.+.+.+. ...+...+.+.|+.
T Consensus 11 ~~~~y~de~y~~~AIvt~~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n~~ 75 (98)
T cd03173 11 KFASYADEPLEGVAIVTYEGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVRENDAN 75 (98)
T ss_pred ceEEEEcCCccEEEEEecCCCCCEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCCCc
Confidence 344444566667777765556788999999999999999999998877654 34677777766653
No 127
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=93.54 E-value=1.1 Score=28.65 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=45.9
Q ss_pred eEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
..+++.++. .+.|.+..|+..+.......|++.+..+ .....++++.++|.....
T Consensus 87 IvEvGnLAs----~~~g~~~~l~~~l~~~L~~~g~~w~vfT---aT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 87 IVEVGNLAS----FSPGAARLLFAALAQLLAQQGFEWVVFT---ATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred eeEeechhh----cCcccHHHHHHHHHHHHHHCCCCEEEEe---CCHHHHHHHHHcCCCcee
Confidence 567887774 3579999999999999999999877766 778899999999998765
No 128
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=93.33 E-value=0.99 Score=37.16 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=48.2
Q ss_pred CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
+|+++|++.+.+...+.+.+.-+--+|+. =.|+-..|+..++.++++.|+..+.+...+
T Consensus 429 ~G~i~af~s~~p~~~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 429 DGQVVALLSFVPWGRRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred CCeEEEEEEEeeeCCCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 79999999998644455666656656764 679999999999999999999999988554
No 129
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=93.32 E-value=0.058 Score=37.57 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=30.7
Q ss_pred eEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHH
Q 042035 61 QVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAA 100 (158)
Q Consensus 61 ~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~ 100 (158)
.+||+..=.-......-+.++-+.|-||++|+|+.|++..
T Consensus 248 h~vGyFSKEK~S~~~yNLaCILtLP~yQRrGYG~lLIdFS 287 (395)
T COG5027 248 HLVGYFSKEKESEQDYNLACILTLPPYQRRGYGKLLIDFS 287 (395)
T ss_pred eeeeeechhhcccccCceEEEEecChhHhcccceEeeeee
Confidence 3778876554444556688899999999999999888754
No 130
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=92.47 E-value=2.6 Score=29.28 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=61.9
Q ss_pred EEEEECCeEEEEEEEeec------CCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhC---------C-ccEEEEEEc
Q 042035 54 LYIQIHGQVVGYVMYAWP------TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR---------T-VLRITLHVD 117 (158)
Q Consensus 54 ~~~~~~~~~vG~~~~~~~------~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~---------g-~~~i~~~~~ 117 (158)
.++..-+.||+.+.+.+. ..-...|..+.|+.-|..-|+-..|++.++-.+++. | --.+.+++-
T Consensus 172 ~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~Y 251 (304)
T PF11124_consen 172 HIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVY 251 (304)
T ss_pred eEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEee
Confidence 334446889999988642 223567889999999999999999999986555431 2 123445566
Q ss_pred CCChhhHHHHHhCCCEEee
Q 042035 118 PFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 118 ~~n~~~~~~y~~~Gf~~~~ 136 (158)
.......+..++.||....
T Consensus 252 SFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 252 SFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred eccHHHHHHHHHCCCeeee
Confidence 7788999999999999887
No 131
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=92.37 E-value=3.1 Score=29.99 Aligned_cols=128 Identities=14% Similarity=0.058 Sum_probs=74.5
Q ss_pred CCcccccccCCccchhhHHHHHHHHhhhcCC---ChhhHHHHHHHHh-c--CCceEEEEEECCeEEEEEEEeecCCCeEE
Q 042035 4 NGAVTELQRNSTNWTNVVDEIVKMEKKIFPK---HEPLARSFDEELK-K--KNSGLLYIQIHGQVVGYVMYAWPTSLSAS 77 (158)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 77 (158)
+++++.++-++. ...++..+..++..++.. ...+...+...+. . +...++++..+|++||+..+. ..+++.+
T Consensus 199 Gi~~~~l~G~~i-~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l-~~~~~Ly 276 (370)
T PF04339_consen 199 GIRIRTLTGDEI-TDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCL-RGDDTLY 276 (370)
T ss_pred CCEEEEEeCCCC-CHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEE-EeCCEEE
Confidence 456666654421 223566777776665432 2222222222222 2 244456667799999999886 4455665
Q ss_pred EEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 78 i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
-...+...++.+.= -....-..+++|.+.|+..+......+ .=...||.++.+..-
T Consensus 277 GRYwG~~~~~~~LH-Fe~cYYq~Ie~aI~~Gl~~f~~GaqGE------HK~~RGf~P~~t~S~ 332 (370)
T PF04339_consen 277 GRYWGCDEEIPFLH-FELCYYQGIEYAIEHGLRRFEPGAQGE------HKIARGFEPVPTYSA 332 (370)
T ss_pred EeeecccccccCcc-hHHHHHHHHHHHHHcCCCEEECCcchh------HHHHcCCccccceee
Confidence 55566666665322 233455789999999999877663332 223579988876543
No 132
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=91.88 E-value=1.3 Score=24.55 Aligned_cols=28 Identities=11% Similarity=-0.048 Sum_probs=23.8
Q ss_pred ccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 109 VLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+..++=.|..+|...++|.+.+|++...
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 5667777888999999999999998654
No 133
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=91.63 E-value=2.3 Score=26.99 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=52.0
Q ss_pred EEeccCccCCcHHHHHHHHHHHHHHhC-CccEEEEEEcCCChhh---HHHHHhCCCEEeeeeccccccCCcceEEEeecc
Q 042035 81 LAVKENYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPFRTPA---VNLYKKFGFQVDALIQGYYSADRPAYRMYMDFD 156 (158)
Q Consensus 81 ~~v~~~~r~~Gig~~l~~~~~~~~~~~-g~~~i~~~~~~~n~~~---~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~ 156 (158)
+..-|+-.=-+.-++=+-++++.|.++ .++++.+.....+..- .+-+.-+||++.........+..+.+.|...+.
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~HP~~pp~~~~ffM~Y~~e 184 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPDHPVVPPRPDVFFMVYPLE 184 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCCCCCCCCccceEEEEEeec
Confidence 444455444566677777888888655 8899988877655443 444556899888755444445678899998876
Q ss_pred C
Q 042035 157 S 157 (158)
Q Consensus 157 ~ 157 (158)
.
T Consensus 185 r 185 (191)
T KOG4387|consen 185 R 185 (191)
T ss_pred c
Confidence 4
No 134
>PRK04531 acetylglutamate kinase; Provisional
Probab=91.39 E-value=3.3 Score=30.21 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHH
Q 042035 20 VVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEA 99 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~ 99 (158)
|.+.+..+....|..... +.+.+ . ...+.++.++..=|.+.+.++ ....++..|.|.+..||.|++..+++.
T Consensus 263 d~~~l~~ll~~sf~r~~~--~~y~~----~-~~~~~~y~~~~y~~~Aiv~~~-~~~~~Ldkf~v~~~~~~~~v~d~vf~~ 334 (398)
T PRK04531 263 DLERLNLLIESSFGRTLK--PDYFD----T-TQLLRAYVSENYRAAAILTET-GGGPYLDKFAVLDDARGEGLGRAVWNV 334 (398)
T ss_pred CHHHHHHHHhhhcccchH--HHHhc----c-CCceEEEEeCCCcEEEEEecC-CCceEeEEEEEccchhhcChHHHHHHH
Confidence 555555555555543222 22222 1 334555556776677766643 567899999999999999999999988
Q ss_pred HHHHHHhCCccEEEEEEcCCChhhHHHH
Q 042035 100 AIKKCRTRTVLRITLHVDPFRTPAVNLY 127 (158)
Q Consensus 100 ~~~~~~~~g~~~i~~~~~~~n~~~~~~y 127 (158)
+.+.. ..+.+.+.+.|+.- ++|
T Consensus 335 ~~~~~-----~~L~Wrsr~~n~~~-~Wy 356 (398)
T PRK04531 335 MREET-----PQLFWRSRHNNTIN-KFY 356 (398)
T ss_pred HHhhC-----CceEEEcCCCCCcc-cee
Confidence 76653 45777777666543 444
No 135
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=91.03 E-value=4.3 Score=28.94 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=69.5
Q ss_pred ccccccCCccchhhHHHHHHHHhhh---cCCC-hhhHHHHHHHHhcCCceE--EEEEE-CCeEEEEEEEeecCC------
Q 042035 7 VTELQRNSTNWTNVVDEIVKMEKKI---FPKH-EPLARSFDEELKKKNSGL--LYIQI-HGQVVGYVMYAWPTS------ 73 (158)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~--~~~~~-~~~~vG~~~~~~~~~------ 73 (158)
+|++++. |++++.++.... |.-. .-..+++..++......+ +++.. +|++.+|+.++..+.
T Consensus 263 ~R~me~k------Dvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~ 336 (421)
T KOG2779|consen 263 LREMEEK------DVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNP 336 (421)
T ss_pred ccccccc------chHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCC
Confidence 5666666 777777776543 3211 112345556655444332 34444 789999998863221
Q ss_pred --CeEEEEEEE--eccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecccc
Q 042035 74 --LSASITKLA--VKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGYY 142 (158)
Q Consensus 74 --~~~~i~~~~--v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~ 142 (158)
.....+.++ ++.+ -=-..|+..++-.++..|++.+-+-..-.| ..|++.++|-.-.-.-.||
T Consensus 337 ~~ktl~aaYlyY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN---~~fl~~LkFg~GdG~l~YY 402 (421)
T KOG2779|consen 337 KYKTLQAAYLYYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMEN---ESFLKDLKFGPGDGNLQYY 402 (421)
T ss_pred CcceeeeeeEEEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhh---hhHHHhcCcCcCCCceeEE
Confidence 222222222 2222 113557777777888889887766544444 3688999998754333443
No 136
>PHA02769 hypothetical protein; Provisional
Probab=89.10 E-value=0.65 Score=27.08 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH---HhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 93 GEALLEAAIKKC---RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 93 g~~l~~~~~~~~---~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
|..|++.+...+ +..|++.++.--.++. +..+|+|.||+.+|..
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdh--snaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDH--SNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCc--chhHHhhhhhhHhccc
Confidence 556666665554 4457776655545543 5689999999999854
No 137
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=88.28 E-value=7.2 Score=28.62 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=58.3
Q ss_pred ceEEEEEECCeEEEEEEEeecCCCeEEEEEEEe-cc--CccCCcHHHHHHHHHHHHHHhCCccEEEEEE-----------
Q 042035 51 SGLLYIQIHGQVVGYVMYAWPTSLSASITKLAV-KE--NYRGQGHGEALLEAAIKKCRTRTVLRITLHV----------- 116 (158)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v-~~--~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~----------- 116 (158)
..++.+..+++.|+.+.+............+.- .| +|=++.+-...++.+..+++...+-.+.+..
T Consensus 40 ~~~~~v~~~~~~v~aa~ll~k~~~~~~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~~~l~i~idP~l~~~~~~~~~ 119 (418)
T COG2348 40 AHLIGVKKDGNAVIAASLLSKKLPLGFYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSKRALFIKIDPYLVYQQFDLGG 119 (418)
T ss_pred ceeEEEEecCceeeeeeeeeeeccCCceEEEecCCCcccccchHHHHHHHHHHHHHHhhccceEEEeccchhhhcccCCC
Confidence 344666667666555544322221111111222 34 8888888888888999998876554443321
Q ss_pred ----cCCChhhHHHHHhCCCEEeeeeccccc
Q 042035 117 ----DPFRTPAVNLYKKFGFQVDALIQGYYS 143 (158)
Q Consensus 117 ----~~~n~~~~~~y~~~Gf~~~~~~~~~~~ 143 (158)
...|...+..+..+|++..+....+-.
T Consensus 120 ~~~~~~~n~~~i~~l~~lG~k~~g~t~~~~~ 150 (418)
T COG2348 120 EIIENYNNLAIIKLLKDLGYKHSGFTKGLDD 150 (418)
T ss_pred ccccCcchHHHHHHHHHhhhhhcCcccccCc
Confidence 145678899999999999997766644
No 138
>PRK00756 acyltransferase NodA; Provisional
Probab=87.95 E-value=1.2 Score=27.96 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhhcCCChhhH-HHH---HHHHhcCCceEEEEEECCeEEEEEEEee-------cCCCeEEEEEEEeccCc
Q 042035 19 NVVDEIVKMEKKIFPKHEPLA-RSF---DEELKKKNSGLLYIQIHGQVVGYVMYAW-------PTSLSASITKLAVKENY 87 (158)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~vG~~~~~~-------~~~~~~~i~~~~v~~~~ 87 (158)
.|-.++.++....|.+.-.+. .-+ .++.-..+..-.+.++...+++.+.+-+ .+--.++++-..|+|+.
T Consensus 18 adH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPElRaIgyD~~GVaAH~G~LRRFIkVg~vDlLVaElGLygVRpDL 97 (196)
T PRK00756 18 SDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIAYDSHGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPDL 97 (196)
T ss_pred chhHHHHHHHHHhcCCcccccccccCcCcccccCCceeEEEeecCccHhHhHHHHhhhheecccceeEEEeeeeeecccc
Confidence 467788888888886643221 111 1122223445566676666666655432 12246789999999999
Q ss_pred cCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 88 RGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 88 r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
.|.||+..+ ..+.-..++.|+..-..++..
T Consensus 98 EGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~ 127 (196)
T PRK00756 98 EGLGIAHSI-RAMYPVLQELGVPFAFGTVRH 127 (196)
T ss_pred ccccchhhH-HHHHHHHHhcCCCeecccchH
Confidence 999998865 677777788888877666554
No 139
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=6.8 Score=29.76 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=48.2
Q ss_pred EEEECCeEEEEEEEeecCC-CeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 55 YIQIHGQVVGYVMYAWPTS-LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 55 ~~~~~~~~vG~~~~~~~~~-~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
++..+|++||++.+.+... ....+.-+--+|+.= +|+-..|...++.++++.|+.++.+...
T Consensus 397 ~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgmA 459 (538)
T COG2898 397 AVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGMA 459 (538)
T ss_pred EEcCCCCeEEEEeecccCCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCCc
Confidence 3344788999999986443 455666666677644 5999999999999999999999988744
No 140
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=1.7 Score=32.99 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=49.8
Q ss_pred EEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 81 LAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 81 ~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.+++.+.-.-++.+.+++-+....+..|+....+.|.....+-++||.++||...+..
T Consensus 822 ~~~~~~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 822 TYFGMDASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred hccccccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 3455555677999999999999999999999999999999999999999999877644
No 141
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=83.84 E-value=12 Score=27.07 Aligned_cols=81 Identities=12% Similarity=0.263 Sum_probs=51.7
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeec---CCCeEEEEEEEeccCccC-CcHHHH
Q 042035 20 VVDEIVKMEKKIFPKHEPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWP---TSLSASITKLAVKENYRG-QGHGEA 95 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~---~~~~~~i~~~~v~~~~r~-~Gig~~ 95 (158)
|++.+..+.+..|...-. ...++..+.. ...-+...|..-|.+++... .++.-++..++|.++.|| -||+..
T Consensus 346 dl~r~q~LI~~SFkRTLd-~h~y~~r~~~---~La~~iVsgdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~ 421 (495)
T COG5630 346 DLPRLQHLIQSSFKRTLD-PHYYETRINT---PLARAIVSGDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDA 421 (495)
T ss_pred CcHHHHHHHHHHHhhccC-HHHHHHhccC---cceeEEeeccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHH
Confidence 455555666666643222 2334443332 23344445777777777643 346789999999999999 899998
Q ss_pred HHHHHHHHH
Q 042035 96 LLEAAIKKC 104 (158)
Q Consensus 96 l~~~~~~~~ 104 (158)
+...+.+..
T Consensus 422 vfniM~e~f 430 (495)
T COG5630 422 VFNIMREEF 430 (495)
T ss_pred HHHHHHHhC
Confidence 887766554
No 142
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=81.93 E-value=12 Score=24.38 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=69.7
Q ss_pred ccccccCCccchhhHHHHHHHHhhhcCCC----hhhHHHHHHHHhcCCc--eEEEEEE-CCeEEEEEEEeec------C-
Q 042035 7 VTELQRNSTNWTNVVDEIVKMEKKIFPKH----EPLARSFDEELKKKNS--GLLYIQI-HGQVVGYVMYAWP------T- 72 (158)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~-~~~~vG~~~~~~~------~- 72 (158)
+|++++. |++++..+.......- .-..+++..++..... ..+++.+ +|++..++.++.. .
T Consensus 31 lR~m~~~------Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~ 104 (190)
T PF02799_consen 31 LRPMEEK------DVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNP 104 (190)
T ss_dssp EEE--GG------GHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSS
T ss_pred cccCchh------hHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCC
Confidence 7888888 8888888877654321 1234556666655443 3345555 4588888887631 1
Q ss_pred -CC---eEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccc
Q 042035 73 -SL---SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGY 141 (158)
Q Consensus 73 -~~---~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~ 141 (158)
.. .+++. ..+... -=-..|+..++-.|++.|++.+-+-..-+|. .|.+.+.|..-.-.-.|
T Consensus 105 k~~~l~aAY~f-Y~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~Y 169 (190)
T PF02799_consen 105 KHKTLKAAYSF-YYVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNS---SFLEDLKFGPGDGNLNY 169 (190)
T ss_dssp SSSEEEEEEEE-EEEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGG---GTTTTTT-EEEEEEEEE
T ss_pred Cccceeeeeee-eeeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccch---hhHhhCCccCCCCCeEE
Confidence 11 23333 223222 1235678888888999999987766555554 57899999865433333
No 143
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=80.27 E-value=9.4 Score=22.28 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=27.8
Q ss_pred eccCccCCcHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHH---hCCCEEeeeecccccc---CCcceEEEee
Q 042035 83 VKENYRGQGHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYK---KFGFQVDALIQGYYSA---DRPAYRMYMD 154 (158)
Q Consensus 83 v~~~~r~~Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~---~~Gf~~~~~~~~~~~~---~~~~~~m~~~ 154 (158)
+.+..-++| -+.-+-++++.|.+ .+|+++.+...........+-+ =.||+...--..-..+ .++++.|...
T Consensus 30 ip~~~~~~~-~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~~~~~~~~~~~s~~~lfm~~e 107 (108)
T PF02100_consen 30 IPSSALGQG-SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTPGHPSVPPDITSPDWLFMGYE 107 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE----SS-SS----S--EEEEE-
T ss_pred ECCcccccc-cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCCCCCCCCCcCCCCCEEEEEEE
Confidence 444555555 44555577888864 5999999988776655444444 4788887633211122 4466777654
No 144
>PHA00771 head assembly protein
Probab=78.93 E-value=12 Score=22.56 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=53.5
Q ss_pred ECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhC-CccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 58 IHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 58 ~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~-g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
..|..=|.+.+....+-......+ -+|++||+-- ..-.....|..+. .+..+...+...-+-.+-..+-+|.+.+|
T Consensus 45 ~~~~yeGivl~~eV~p~~~ecHa~-y~P~fRG~ya--~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG 121 (151)
T PHA00771 45 VHGQFGGIVYYNEIQPLTFDCHAM-YLPEIRGFSK--EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVG 121 (151)
T ss_pred ccceeeeEEEEEEeeeEEEEEEee-eCccccchhH--HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceee
Confidence 345555555544222224444434 4899997632 5555666666543 45554444544445566667889999999
Q ss_pred eeccccccCCcceE
Q 042035 137 LIQGYYSADRPAYR 150 (158)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (158)
.+++++....+.-+
T Consensus 122 ~id~a~~g~~~vT~ 135 (151)
T PHA00771 122 TIKKYFKGVDDVTF 135 (151)
T ss_pred eHHHHhcCCCceEE
Confidence 99999854433333
No 145
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=78.66 E-value=10 Score=21.74 Aligned_cols=64 Identities=8% Similarity=0.005 Sum_probs=44.3
Q ss_pred EEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCCh
Q 042035 53 LLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRT 121 (158)
Q Consensus 53 ~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~ 121 (158)
.+-++.++..=+.+++..+.+...++..+.|...-++.|++..+.+.+.+. ...+...+.+.|+
T Consensus 11 ~~k~Y~de~~~a~AIV~~~~~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d-----~p~L~W~~r~~n~ 74 (98)
T cd04263 11 PFKAYGDEPMEVLAIVLPPSGEVATLATFTITKSGWLNNVADNIFTAIKKD-----HPKLVWTVREDDE 74 (98)
T ss_pred CeEEEecCCCcEEEEEecCCCCCEEEEEEEEccccccccHHHHHHHHHHhh-----CCeeEEEeCCCCC
Confidence 344444554444444443446788999999999999999999888876654 3467777776665
No 146
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=78.50 E-value=3.4 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=17.5
Q ss_pred EEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 111 RITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 111 ~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
.+.+.|. +-.+|++||+++||+...
T Consensus 3 ~i~l~V~-D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 3 AVGIVVA-DMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred eEEEEec-cHHHHHHHHHHhCceecC
Confidence 3444443 346799999999998753
No 147
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=78.32 E-value=3.1 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.316 Sum_probs=20.9
Q ss_pred CccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
+++++.+.|.. -..+++||+++||+....
T Consensus 3 ~i~Hi~i~v~D-l~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVRD-LEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeCC-HHHHHHHHHHcCCEEccc
Confidence 35566666653 467899999999987643
No 148
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=77.04 E-value=7.9 Score=24.54 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=27.2
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
.+++|.-|+|.+++ ++.|++++.+-+ .|+......+.+|-++.+..+
T Consensus 122 ~~d~R~ygigaqIL-------~dLGV~~~rLLt--nnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 122 PEDLRDYGIGAQIL-------RDLGVKKMRLLT--NNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp -S----THHHHHHH-------HHTT--SEEEE---S-HHHHHHHHHTT--EEEEE-
T ss_pred ccccccHHHHHHHH-------HHcCCCEEEECC--CChhHHHHHhcCCCEEEEEec
Confidence 46777778887766 456888888774 457788888999999887653
No 149
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=74.78 E-value=8.3 Score=25.35 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHhC--CccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 91 GHGEALLEAAIKKCRTR--TVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~--g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
|.|..++..+++..... ....+.+.........+++...+||....+.
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeE
Confidence 88888988888877543 5667888877766677888899999998754
No 150
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=73.35 E-value=14 Score=23.71 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
|+-|+.+..+.++. .++.+.+.+.+..+....+..+.|.++......
T Consensus 26 GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~ 72 (177)
T COG2266 26 GKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE 72 (177)
T ss_pred CccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC
Confidence 47788888888776 789999999999888999999999988876554
No 151
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=73.30 E-value=12 Score=21.92 Aligned_cols=89 Identities=11% Similarity=0.131 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCceEEEEEE-CCeEEEEEEEeecC--CCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEE
Q 042035 39 ARSFDEELKKKNSGLLYIQI-HGQVVGYVMYAWPT--SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLH 115 (158)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~--~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~ 115 (158)
.......+.+.+...+.+.- .+++-|.-.+.... +....+..+++.|+ -+-.+++.+.+.|++.+++.
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~---------~~~~~v~~~~~~g~~~v~~~ 86 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPD---------KVPEIVDEAAALGVKAVWLQ 86 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HH---------HHHHHHHHHHHHT-SEEEE-
T ss_pred HHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 34445555554433443322 45555665554221 23344455555444 45566667777799999999
Q ss_pred EcCCChhhHHHHHhCCCEEee
Q 042035 116 VDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 116 ~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
....++.++.+.++.|.+..+
T Consensus 87 ~g~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 87 PGAESEELIEAAREAGIRVIG 107 (116)
T ss_dssp TTS--HHHHHHHHHTT-EEEE
T ss_pred cchHHHHHHHHHHHcCCEEEe
Confidence 999999999999999999887
No 152
>COG4866 Uncharacterized conserved protein [Function unknown]
Probab=72.37 E-value=28 Score=23.82 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=47.3
Q ss_pred CcccccccCCccchhhHHHHHHHHhhhcCC----C-------hhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCC
Q 042035 5 GAVTELQRNSTNWTNVVDEIVKMEKKIFPK----H-------EPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTS 73 (158)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 73 (158)
....++++. .+.++..+....+.. . ........+....-+....++..+++++|+.......+
T Consensus 152 ~~yE~Is~~------nl~EV~~FlKkW~e~~~~~s~~~L~nen~~il~~~e~~~~l~lkgllirv~neI~aftL~e~ln~ 225 (294)
T COG4866 152 FVYEKISPQ------NLKEVLEFLKKWFELESQTSDIGLINENKGILSVLENYESLDLKGLLIRVNNEIVAFTLGEVLNE 225 (294)
T ss_pred ceeeecCcc------cHHHHHHHHHHHHHHhcccccceeecccHHHHHHHhhccccCccceEEEEccEEEEEEEEEeeCC
Confidence 456677777 677776666554411 0 00011111112222444567778999999999887767
Q ss_pred CeEEEEEEEeccCccC
Q 042035 74 LSASITKLAVKENYRG 89 (158)
Q Consensus 74 ~~~~i~~~~v~~~~r~ 89 (158)
+.+.|..=-.+++++|
T Consensus 226 ~~alIhiEk~l~d~~G 241 (294)
T COG4866 226 ESALIHIEKALTDIAG 241 (294)
T ss_pred ceeeeehhhcchHHHH
Confidence 7777776566778774
No 153
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=71.96 E-value=3.3 Score=25.37 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=23.9
Q ss_pred CCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 107 RTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 107 ~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
.|++.|...+... ..+..+++++||+.+++.+
T Consensus 8 ~G~dFvEFa~~~~-~~l~~~~~~lGF~~~a~hr 39 (139)
T PF14696_consen 8 DGFDFVEFAVPDA-QALAQLFTALGFQPVARHR 39 (139)
T ss_dssp EEEEEEEEE-SST-TSCHHHHCCCCEEEECCEC
T ss_pred CCeEEEEEecCCH-HHHHHHHHHhCcceEEecC
Confidence 3677888877664 5667788999999998653
No 154
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.43 E-value=14 Score=24.54 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=29.3
Q ss_pred HHHHHhCCccEEEEE---EcCCChhhHHHHHhCCCEEeeee
Q 042035 101 IKKCRTRTVLRITLH---VDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 101 ~~~~~~~g~~~i~~~---~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
++-.+..|.+++.+- +.+-|++.+.|+++.||.+....
T Consensus 110 v~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~ 150 (238)
T COG3473 110 VEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFK 150 (238)
T ss_pred HHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEee
Confidence 444566688888776 44678999999999999998743
No 155
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=71.17 E-value=37 Score=24.70 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=59.6
Q ss_pred ceEEEEEECCeEEEEEEEeec---------------------------------CCCeEEEEEEEeccCccCCcHHHHHH
Q 042035 51 SGLLYIQIHGQVVGYVMYAWP---------------------------------TSLSASITKLAVKENYRGQGHGEALL 97 (158)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~---------------------------------~~~~~~i~~~~v~~~~r~~Gig~~l~ 97 (158)
...+++.++|++||.+=++.. ..+.. -..+.++|......+...|+
T Consensus 44 p~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~-G~R~l~~~~~~~~~~~~~L~ 122 (370)
T PF04339_consen 44 PRHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVT-GPRLLIAPGADRAALRAALL 122 (370)
T ss_pred ceEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCc-ccceeECCCCCHHHHHHHHH
Confidence 346788889999999866411 01111 12477888888889999999
Q ss_pred HHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 98 EAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 98 ~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+.+.+.+++.|+..+-+.-. ++.-....+..||..-.
T Consensus 123 ~~~~~~a~~~~~Ss~h~lF~--~~~~~~~l~~~G~~~r~ 159 (370)
T PF04339_consen 123 QALEQLAEENGLSSWHILFP--DEEDAAALEEAGFLSRQ 159 (370)
T ss_pred HHHHHHHHHcCCCcceeecC--CHHHHHHHHhCCCceec
Confidence 99999999999887765532 24455777899997754
No 156
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=70.85 E-value=39 Score=24.82 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=53.4
Q ss_pred eEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 52 GLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
..+....+|.+|+..... ....+.+.....++|++-+--=|..|+-.+++++-.+|+..+-+.|..
T Consensus 273 rl~gL~~G~~lvAV~~~l-r~~~t~h~~l~a~dpe~~~~SPG~~lf~d~i~~~~~~g~~~~DfgvG~ 338 (406)
T COG5653 273 RLFGLHAGGRLVAVHGLL-RQGGTYHAWLGAIDPEFARASPGMLLFLDLIEWACGQGLARFDFGVGD 338 (406)
T ss_pred EEEEEeeCCEEEEEEeee-ccCCEEEEEeeccCHHHhhcCchHHHHHHHHHHHhcCCCeEEeecCCC
Confidence 345555688999888776 456677777788999999889999999999999999999888877754
No 157
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=69.17 E-value=10 Score=25.59 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEc---CCChhhHHHHHhCCCEEeee
Q 042035 94 EALLEAAIKKCRTRTVLRITLHVD---PFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 94 ~~l~~~~~~~~~~~g~~~i~~~~~---~~n~~~~~~y~~~Gf~~~~~ 137 (158)
..-..++.+.++..|+++|.+.+. .-|.....+|++.||++...
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 334556666777889999988754 34677889999999999875
No 158
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=68.23 E-value=2.6 Score=21.84 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=10.5
Q ss_pred eccCccCCcHHHHH
Q 042035 83 VKENYRGQGHGEAL 96 (158)
Q Consensus 83 v~~~~r~~Gig~~l 96 (158)
=+|+||++.+++.|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 37888888888754
No 159
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=67.65 E-value=27 Score=21.74 Aligned_cols=48 Identities=8% Similarity=0.230 Sum_probs=37.7
Q ss_pred cHHH-HHHHHHHHHHHhCCccEEEEEE-----------cCCChhhHHHHHhCCCEEeeee
Q 042035 91 GHGE-ALLEAAIKKCRTRTVLRITLHV-----------DPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 91 Gig~-~l~~~~~~~~~~~g~~~i~~~~-----------~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
-++. ...+.+.+.+.++|+..+.+.+ .+..+.+++...+.|+++....
T Consensus 71 pyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~ 130 (149)
T PTZ00129 71 PYAAMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIE 130 (149)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 3444 3455677778889999999988 5677889999999999987644
No 160
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=67.51 E-value=4.6 Score=23.29 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=15.9
Q ss_pred CChhhHHHHHhCCCEEeeee
Q 042035 119 FRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 119 ~n~~~~~~y~~~Gf~~~~~~ 138 (158)
+-.++++||+.+||+.....
T Consensus 11 Dl~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 11 DFAESKQFYQALGFELEWEN 30 (113)
T ss_pred cHHHHHHHHHHhCCeeEecC
Confidence 34678999999999987654
No 161
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=67.47 E-value=38 Score=23.35 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=40.2
Q ss_pred EEEEECCeEEEEEEEeecCCC-eE--EEEEEEeccCccCCcHHHHHH----HHHHHHHHhCCcc
Q 042035 54 LYIQIHGQVVGYVMYAWPTSL-SA--SITKLAVKENYRGQGHGEALL----EAAIKKCRTRTVL 110 (158)
Q Consensus 54 ~~~~~~~~~vG~~~~~~~~~~-~~--~i~~~~v~~~~r~~Gig~~l~----~~~~~~~~~~g~~ 110 (158)
.+...+|+++++-.+...... .. .....++||+++.--.|+.|+ +.+.++|+++|..
T Consensus 176 ~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~ 239 (264)
T PF07395_consen 176 SVLFLNGQPCAIQLVYKVESPKWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKP 239 (264)
T ss_pred eEEEECCcceEEEEEEEecCCCeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCCc
Confidence 455569999999887743332 22 233478899999999999884 5677777777643
No 162
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=67.46 E-value=12 Score=22.34 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=20.7
Q ss_pred cEEEEEEcCCChhhHHHHHh-CCCEEeeeec
Q 042035 110 LRITLHVDPFRTPAVNLYKK-FGFQVDALIQ 139 (158)
Q Consensus 110 ~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~~ 139 (158)
+++.+.|. +-.++++||++ +||+......
T Consensus 2 ~Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 2 DHVEFYVG-NAKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred eEEEEEeC-CHHHHHHHHHHhcCCeEEEecC
Confidence 45566653 44678999998 9999876543
No 163
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=67.30 E-value=30 Score=22.16 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhhcC---CC---hhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHH
Q 042035 20 VVDEIVKMEKKIFP---KH---EPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHG 93 (158)
Q Consensus 20 ~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig 93 (158)
++.++.+-....-. .. ..+.+.+.+.......+.+=+.+++++||-........-......+. +...-+
T Consensus 61 ~F~~Vi~~Ca~~~~~~~~TWI~~~~~~aY~~Lh~~G~aHSvEvw~~~~LvGGlyGv~iG~~F~GESMFs-----~~~~AS 135 (173)
T PF03588_consen 61 AFEEVIRACAEPRRGQDGTWITPEMIEAYTELHELGYAHSVEVWQGGELVGGLYGVAIGGVFFGESMFS-----RVSNAS 135 (173)
T ss_dssp -HHHHHHHHHTSS--STGTTS-HHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEEEEETTEEEEEEEEE-----SSTTHH
T ss_pred CHHHHHHHHccCCCCCCCCCcCHHHHHHHHHHHHcCeeEEEeeecCCeeEEeeeCEEECCEEEeccccc-----cCCChH
Confidence 45555555444331 11 23334444444455556666778999997664432333233333343 334678
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 94 EALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 94 ~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+..+-++.+++++.|+.-+-+... | ...+++|-..+.
T Consensus 136 Kval~~L~~~L~~~g~~liD~Q~~--~----~hl~slGa~~i~ 172 (173)
T PF03588_consen 136 KVALVALVEHLRQCGFQLIDCQMP--T----PHLASLGAKEIP 172 (173)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES--------HHHHHTTEEEE-
T ss_pred HHHHHHHHHHHHHCCCcEEEeccC--C----HHHHhcCCEeCC
Confidence 888999999999999876666543 3 455778877653
No 164
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=65.34 E-value=5.5 Score=23.22 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=14.8
Q ss_pred CChhhHHHHHhCCCEEee
Q 042035 119 FRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 119 ~n~~~~~~y~~~Gf~~~~ 136 (158)
+-.+++.||+.+||+...
T Consensus 10 Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 10 DLEKSTAFYTALGFEFNP 27 (124)
T ss_pred CHHHHHHHHHHCCCEEcc
Confidence 346799999999999764
No 165
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=64.98 E-value=10 Score=21.64 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=20.1
Q ss_pred ccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
+.++.+.|.. -.++.+||+.+||+....
T Consensus 3 i~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 4566666543 367899999999998653
No 166
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=64.81 E-value=9.8 Score=21.79 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=19.5
Q ss_pred ccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
+..+.+.|.. -.++.+||+.+||+....
T Consensus 4 l~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 4 IAHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 3455555543 467899999999987654
No 167
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=64.74 E-value=46 Score=23.35 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=39.8
Q ss_pred EEEEEECCeEEEEEEEeecCCCe---EEEEEEEeccCccCCcHHHHHH----HHHHHHHHhCCc
Q 042035 53 LLYIQIHGQVVGYVMYAWPTSLS---ASITKLAVKENYRGQGHGEALL----EAAIKKCRTRTV 109 (158)
Q Consensus 53 ~~~~~~~~~~vG~~~~~~~~~~~---~~i~~~~v~~~~r~~Gig~~l~----~~~~~~~~~~g~ 109 (158)
..+...+|+|+|+-.+.....+. ......++||+++.--.|+.|+ +.+.++|+++|.
T Consensus 205 G~VLfl~~~PcA~qlv~k~eSp~wi~~D~iNgG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~~K 268 (298)
T PRK15312 205 GHILYIEGIPCAFDIVLKSESQMNVYFDVPNGAVKNECMPLSPGSILMWLNISRARHYCQERQK 268 (298)
T ss_pred eeEEEECCcceEEEEEEEecCCCcEEEecccCccCcccccCCCccEEEEecHHHHHHHHHhcCC
Confidence 34556699999998877433322 2333578999999999999884 566667766653
No 168
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=64.06 E-value=4.6 Score=28.59 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=14.5
Q ss_pred EEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcH
Q 042035 56 IQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGH 92 (158)
Q Consensus 56 ~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gi 92 (158)
+.+.|++||=..+.+.......+..-.+...||+||+
T Consensus 320 ~lehGQ~vgrLvyE~m~~~P~~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 320 ILEHGQIVGRLVYERMAERPERLYGAGIGSNYQGQGL 356 (364)
T ss_dssp EEETT-EEEEEEEEEBSS----TTSS-----------
T ss_pred eeeCCcEEEEEEehhhccCccccccccccccchhhhh
Confidence 4458999999999864443333444456788999886
No 169
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=63.58 E-value=14 Score=21.16 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=19.8
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
+.++.+.|.. -..++.||++ +||+.....
T Consensus 2 i~hv~l~v~d-~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 2 LHHVTLITRD-AQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cccEEEEcCC-hhHhHHHHHHccCCEEeeeE
Confidence 4556665533 3678999975 899987654
No 170
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=62.66 E-value=16 Score=22.93 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCccEEEEEEcCC--C--hhhHHHHHhCCCEEeeeecc
Q 042035 97 LEAAIKKCRTRTVLRITLHVDPF--R--TPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 97 ~~~~~~~~~~~g~~~i~~~~~~~--n--~~~~~~y~~~Gf~~~~~~~~ 140 (158)
++.+++.|+..|++++.+-.-.+ + ....+++++.||++....-.
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~CK 90 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVCCK 90 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 56788889999999887763221 2 22346778999999886644
No 171
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=62.55 E-value=19 Score=21.66 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=17.9
Q ss_pred EEEEEEcCCChhhHHHHH-hCCCEEeeee
Q 042035 111 RITLHVDPFRTPAVNLYK-KFGFQVDALI 138 (158)
Q Consensus 111 ~i~~~~~~~n~~~~~~y~-~~Gf~~~~~~ 138 (158)
++.+.|. +-.+|++||+ .+||+...+.
T Consensus 5 Hv~irV~-DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 5 HFVFKVG-NRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCEEEeee
Confidence 3444433 3478999995 5999986643
No 172
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=62.28 E-value=47 Score=23.06 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=40.1
Q ss_pred CeEEEEEEEeccCccCC--cHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 74 LSASITKLAVKENYRGQ--GHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 74 ~~~~i~~~~v~~~~r~~--Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
+...+..+.-++.+-.. .+-...+..=+..+++.|++.|.+...+..+....+..++|+-+......
T Consensus 13 k~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 13 KPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp EEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred EEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 34455556666655444 35566666667788999999999876666677788889999988765543
No 173
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=61.53 E-value=8.5 Score=22.29 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=16.4
Q ss_pred CChhhHHHHHhCCCEEeeeec
Q 042035 119 FRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 119 ~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
+-..+++||+++||+......
T Consensus 12 Dl~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 12 DLDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred CHHHHHHHHHHcCCEEEecCC
Confidence 346799999889999876544
No 174
>PRK10150 beta-D-glucuronidase; Provisional
Probab=60.84 E-value=73 Score=24.84 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=48.7
Q ss_pred CeEEEEEEEeccCc--cCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 74 LSASITKLAVKENY--RGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 74 ~~~~i~~~~v~~~~--r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
....+..+..|++. .|.++....+..-++.+++.|++.|.+...+..+....+..++|+-+..+.+
T Consensus 290 ~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p 357 (604)
T PRK10150 290 KPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETP 357 (604)
T ss_pred EEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecc
Confidence 45566667677665 4445556666677788899999999987666667777888899998877654
No 175
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=59.44 E-value=14 Score=22.94 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=20.6
Q ss_pred CCccEEEEEEcCCChhhHHHHHh-CCCEEe
Q 042035 107 RTVLRITLHVDPFRTPAVNLYKK-FGFQVD 135 (158)
Q Consensus 107 ~g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~ 135 (158)
+++.++.+.|.. -.+|+.||++ +||+..
T Consensus 3 ~~i~Hv~i~V~D-le~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 3 RTFSHIGISVPD-LDAAVKFYTEVLGWYLI 31 (162)
T ss_pred ceEEEEEEEeCC-HHHHHHHHHHhcCCEEE
Confidence 356677777654 4679999976 899875
No 176
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=59.29 E-value=28 Score=23.34 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHhC--CccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 91 GHGEALLEAAIKKCRTR--TVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~--g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
|.|-.++..+++..++. ++.++.+.....-...+.+..+++|+...+.
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee
Confidence 88889999988888664 6677777643333445677789999987644
No 177
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=58.83 E-value=16 Score=17.75 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=14.1
Q ss_pred HhcCCce-EEEEEECCeEEEEEEE
Q 042035 46 LKKKNSG-LLYIQIHGQVVGYVMY 68 (158)
Q Consensus 46 ~~~~~~~-~~~~~~~~~~vG~~~~ 68 (158)
+.+.+.. ..+...+++++|.+..
T Consensus 25 ~~~~~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 25 MRKNGISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp HHHHTSSEEEEESTTSBEEEEEEH
T ss_pred HHHcCCcEEEEEecCCEEEEEEEH
Confidence 3333344 4444468999999864
No 178
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=58.14 E-value=33 Score=25.13 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=24.5
Q ss_pred HhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 105 RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 105 ~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
+..|++++.+-+ .|+.-+.-.+.+|.++.++.+
T Consensus 324 ~dLGV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 324 KALGIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 456788887764 466677778899999987764
No 179
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=57.76 E-value=41 Score=21.99 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=35.2
Q ss_pred eccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 83 VKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 83 v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
..+++|.-|+|.+++ +..|++++.+-+. |+.-..-...+|.++.+..
T Consensus 123 ~~~d~R~yGiGAQIL-------~dLGV~~mrLLtn--~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 123 FAADERDYTLAADML-------KALGVKKVRLLTN--NPKKVEALTEAGINIVERV 169 (197)
T ss_pred CCccceehhHHHHHH-------HHcCCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 356799999999887 4568999887643 4445666778999988765
No 180
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=57.63 E-value=18 Score=20.71 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=21.8
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeeeec
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDALIQ 139 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~~ 139 (158)
+.++.+.|... ..++.||++ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 45566665443 578999976 9999988665
No 181
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=57.27 E-value=33 Score=22.40 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=37.5
Q ss_pred EEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 81 LAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 81 ~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
+.-.+++|.-|+|..++ +..|+.++.+-+. |+.-+.-.+..|-++..+.+.
T Consensus 120 lg~~~D~R~ygigAqIL-------~dLGI~~irLLtn--np~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 120 LGFPADERDYGIGAQIL-------KDLGIKKIRLLTN--NPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred hcCCchHHHHHHHHHHH-------HHcCCcEEEEecC--ChHHHHHHHhCCceEEEEeec
Confidence 45567788888888776 4568999988753 666677778888777776543
No 182
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=56.76 E-value=41 Score=21.83 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=34.5
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.+++|.-|+|.+++ ++.|++++.+-+. |+.-....+.+|-++++..
T Consensus 121 ~~d~R~yGiGAQIL-------~dLGV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 121 PADERDFSLCADIL-------EDLGVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred cccceehhHHHHHH-------HHcCCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 45689999999887 4568999887753 4445666778888888765
No 183
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=55.04 E-value=43 Score=21.76 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHHhCCccEEEEEEcCCC--hhhHHHHHhCCCEEeee
Q 042035 91 GHGEALLEAAIKKCRTRTVLRITLHVDPFR--TPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n--~~~~~~y~~~Gf~~~~~ 137 (158)
-.--.+++.+++..++.|...+.+.-.+.. ......++..||.....
T Consensus 19 ~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 344568999999999999886766655443 46888999999987743
No 184
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=54.80 E-value=57 Score=21.20 Aligned_cols=107 Identities=9% Similarity=0.003 Sum_probs=62.8
Q ss_pred hHHHHHHHHhhhcCC-C---hhhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHH
Q 042035 20 VVDEIVKMEKKIFPK-H---EPLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEA 95 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ 95 (158)
++.++.+-....-++ . ..+.+.+.+.......+.+=++.++++||-+.......-......+ +|...-++.
T Consensus 63 ~F~~Vi~~Ca~~r~~gTWI~~e~~~aY~~LH~~G~AHSvEvw~~~~LvGGlYGv~iG~~F~GESMF-----s~~~nASKv 137 (185)
T TIGR00667 63 AFGQVIEGCASDRPEGTWISDELVEAYHRLHELGHAHSFEVWQGDELVGGMYGIAQGGLFCGESMF-----SRMTNASKT 137 (185)
T ss_pred cHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhCceEEEEEEECCEEEEeeeeeeeCCeEEecccc-----ccCCChhHH
Confidence 455665554421111 1 2334455555555556667777899999866543222212222223 344567777
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
.+-++.+.++..|+.-+-+.+.+ .-.+++|-+.+.+
T Consensus 138 Al~~L~~~L~~~g~~liDcQ~~t------~HL~slGa~ei~R 173 (185)
T TIGR00667 138 ALLVFCEHFIRHGGQLIDCQVQN------PHLASLGAYEVPR 173 (185)
T ss_pred HHHHHHHHHHHCCCcEEEECCCC------HHHHhcCCEEcCH
Confidence 88889999999998766555433 3458889887763
No 185
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=54.15 E-value=51 Score=21.52 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCC-ChhhHHHHHh
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPF-RTPAVNLYKK 129 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~-n~~~~~~y~~ 129 (158)
..-.+.+.|++.||+.+.+..... ++.+.=+|-+
T Consensus 110 yvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k 144 (238)
T KOG4039|consen 110 YVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMK 144 (238)
T ss_pred HHHHHHHHHHhCCCeEEEEEeccCCCcccceeeee
Confidence 445666778999999998886554 3444444433
No 186
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=53.93 E-value=8.6 Score=23.09 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=15.9
Q ss_pred CChhhHHHHHhCCCEEeeee
Q 042035 119 FRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 119 ~n~~~~~~y~~~Gf~~~~~~ 138 (158)
+-.++.+||.++||+.....
T Consensus 13 DL~~S~~Fy~alGfk~Npq~ 32 (133)
T COG3607 13 DLEASKAFYTALGFKFNPQF 32 (133)
T ss_pred hHHHHHHHHHHhCcccCCCc
Confidence 34678999999999987644
No 187
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=53.50 E-value=41 Score=25.93 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=25.8
Q ss_pred HhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 105 RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 105 ~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
+..|+++|.+-+ .|+.-+.-.+.+|.+++++.+
T Consensus 347 ~dLGI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 347 NDLGIKRLRLIT--NNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 556888887765 477778888999999988764
No 188
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=53.26 E-value=29 Score=19.77 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=20.6
Q ss_pred CccEEEEEEcCCChhhHHHHH-hCCCEEee
Q 042035 108 TVLRITLHVDPFRTPAVNLYK-KFGFQVDA 136 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~-~~Gf~~~~ 136 (158)
++..+.+.|.. -.++++||. .+||+...
T Consensus 3 ~~~hi~l~v~d-~~~a~~fy~~~lG~~~~~ 31 (125)
T cd08352 3 GIHHVAIICSD-YEKSKEFYVEILGFKVIR 31 (125)
T ss_pred ccceEEEEcCC-HHHHHHHHHHhcCCEEee
Confidence 56677777643 467899997 59999764
No 189
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=52.54 E-value=29 Score=19.54 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=20.1
Q ss_pred hHHHHHHHHhcCCceEEEEEECCeEEEE
Q 042035 38 LARSFDEELKKKNSGLLYIQIHGQVVGY 65 (158)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 65 (158)
....+.+.+.++..+.=++..+|++||=
T Consensus 53 ~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 53 HDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp HHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred HHHHHHHHHHhcccccceEEECCEEEec
Confidence 3457777777777777677779999984
No 190
>PRK14968 putative methyltransferase; Provisional
Probab=52.26 E-value=57 Score=20.48 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
+++.+...++..|.-.+.......+.....+.++.||+.......
T Consensus 130 ~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 455555555554532232223334566788999999987765443
No 191
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=52.18 E-value=33 Score=20.80 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=33.4
Q ss_pred CccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 86 NYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 86 ~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+=||-|+|+.+++.+.+..-+ . +.+..--.|.-|-....|.|-..-.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~-~---~eI~AlGTNa~AT~~MlKaGA~~gA 52 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE-E---VEIIALGTNAIATSAMLKAGANEGA 52 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC-C---cEEEEEehhHHHHHHHHHcCCCCcc
Confidence 358899999999888776544 2 3344444677788888888887544
No 192
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=51.67 E-value=24 Score=20.09 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=21.4
Q ss_pred CccEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
++..+.+.|. +-.++++||++ +||+.....
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeeccc
Confidence 4566766664 34678999987 999987643
No 193
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=51.41 E-value=19 Score=23.72 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 90 QGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 90 ~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+|||++-...++-+|.++- .+. -+.-+.+++.++|+....
T Consensus 121 KGIG~ETaDsILlYa~~rp----~FV---vD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDRP----VFV---VDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcCc----ccc---hhHHHHHHHHHhcccccc
Confidence 6999999999999997652 222 335688999999998774
No 194
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=50.12 E-value=53 Score=19.47 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=37.2
Q ss_pred cCCcHHHH-HHHHHHHHHHhCCccEEEEEEcC-----------CChhhHHHHHhCCCEEeeee
Q 042035 88 RGQGHGEA-LLEAAIKKCRTRTVLRITLHVDP-----------FRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 88 r~~Gig~~-l~~~~~~~~~~~g~~~i~~~~~~-----------~n~~~~~~y~~~Gf~~~~~~ 138 (158)
++.-++.. ..+.+.+.+.++|+..+.+.+.. ..+.+++-..+.|+++....
T Consensus 42 k~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~ 104 (114)
T TIGR03628 42 ESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIE 104 (114)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 33445544 45667788889999988888743 55778999999999987643
No 195
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=49.95 E-value=27 Score=19.92 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=20.8
Q ss_pred CccEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
++..+.+.+.. -..++.||++ +||+.....
T Consensus 3 ~i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~~ 33 (120)
T cd08362 3 ALRGVGLGVPD-LAAAAAFYREVWGLSVVAED 33 (120)
T ss_pred eeeEEEEecCC-HHHHHHHHHhCcCcEEEEec
Confidence 45566666543 3678999987 999976543
No 196
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=49.81 E-value=29 Score=20.02 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=20.0
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
+..+.+.|.. -.++.+||.+ +||+.....
T Consensus 5 l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 5 PGHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EeEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 4556666543 3678999975 999886643
No 197
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=49.67 E-value=35 Score=20.65 Aligned_cols=30 Identities=7% Similarity=0.161 Sum_probs=20.9
Q ss_pred CccEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
.+.++.+.|.. -.++.+||++ +||++....
T Consensus 6 ~l~Hv~l~v~D-le~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 6 RLDHCLLTGED-IAETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eeCEEEEecCC-HHHHHHHHHHhcCCEEEEEE
Confidence 35566666654 3678999976 999976543
No 198
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=49.56 E-value=30 Score=21.13 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
=++.+++.+++.|.- +.+--++++..++.++-|+...+-+.
T Consensus 24 ~~r~ml~~ak~~g~~---~pvc~D~~A~~k~lkr~gv~~~egl~ 64 (142)
T PF11633_consen 24 NFRAMLQHAKETGLL---CPVCIDYPAFCKTLKRKGVDPKEGLQ 64 (142)
T ss_dssp -CHHHHHHHHHHT-E---EEEETT-HHHHHHHHHTTS---SEEE
T ss_pred hHHHHHHHHHhcCcE---EEEEeccHHHHHHHhccCcccccceE
Confidence 345677778877743 33444789999999998888766444
No 199
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=49.36 E-value=59 Score=19.83 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=36.2
Q ss_pred CcHHHH-HHHHHHHHHHhCCccEEEEEEcC-----------CChhhHHHHHhCCCEEeeee
Q 042035 90 QGHGEA-LLEAAIKKCRTRTVLRITLHVDP-----------FRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 90 ~Gig~~-l~~~~~~~~~~~g~~~i~~~~~~-----------~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.-++.. ..+.+...+.++|+..+.+.+.- ..+.+++...+.|+++....
T Consensus 51 TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~ 111 (132)
T PRK09607 51 SPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIE 111 (132)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 345544 45667778888999988888644 45678999999999987643
No 200
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=48.50 E-value=32 Score=19.45 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=21.4
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeeeec
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDALIQ 139 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~~ 139 (158)
...+.+.|.. -.+++.||+. +||+......
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 4455666544 4779999987 9999977543
No 201
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=48.06 E-value=27 Score=21.23 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=21.8
Q ss_pred hCCccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 106 TRTVLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 106 ~~g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
..++..+.+.|.. -.+++.||+. +||+....
T Consensus 15 ~~~i~hv~l~v~D-l~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 15 KRRLLHTMLRVGD-LDKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred CceEEEEEEEecC-HHHHHHHHHHhcCCEEEEE
Confidence 3456677777654 3678999975 99987543
No 202
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=47.72 E-value=57 Score=19.18 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=22.1
Q ss_pred EEEEEEeccCccCCcHHHHHHHHHHHHHH
Q 042035 77 SITKLAVKENYRGQGHGEALLEAAIKKCR 105 (158)
Q Consensus 77 ~i~~~~v~~~~r~~Gig~~l~~~~~~~~~ 105 (158)
+.+.+.++|++..||.-..|...+...-+
T Consensus 64 ~~~~i~IDP~~~~KGC~~TL~HEL~H~WQ 92 (141)
T PHA02456 64 FVGWIEIDPDYANKGCRDTLAHELNHAWQ 92 (141)
T ss_pred ceeEEEECCcccccchHHHHHHHHHHHHh
Confidence 45678899999999998887766554433
No 203
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=47.58 E-value=28 Score=19.38 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.3
Q ss_pred hhhHHHHHh-CCCEEeeeec
Q 042035 121 TPAVNLYKK-FGFQVDALIQ 139 (158)
Q Consensus 121 ~~~~~~y~~-~Gf~~~~~~~ 139 (158)
..+++||++ +||+......
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~ 26 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDP 26 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHHhcCCEEEEeCC
Confidence 568999997 9999988443
No 204
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=47.28 E-value=91 Score=21.37 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=39.8
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC---CChhhHHHHHhCCCEEeeeec
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP---FRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~---~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
.-+.-++|+|.|++...+.++- +.+.+.|++++.+.... ........-...|..+.+.++
T Consensus 156 vD~vivVvDpS~~sl~taeri~----~L~~elg~k~i~~V~NKv~e~e~~~~~~~~~~~~~vlg~iP 218 (255)
T COG3640 156 VDLVIVVVDPSYKSLRTAERIK----ELAEELGIKRIFVVLNKVDEEEELLRELAEELGLEVLGVIP 218 (255)
T ss_pred CCEEEEEeCCcHHHHHHHHHHH----HHHHHhCCceEEEEEeeccchhHHHHhhhhccCCeEEEEcc
Confidence 3345588999999877776554 44556678888777443 222344555678888888664
No 205
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=47.25 E-value=5.6 Score=31.24 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=59.0
Q ss_pred CCceEEEEEECCe-EEEEEEEee-cCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCC-ccEEEEEEcCCChhhHH
Q 042035 49 KNSGLLYIQIHGQ-VVGYVMYAW-PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT-VLRITLHVDPFRTPAVN 125 (158)
Q Consensus 49 ~~~~~~~~~~~~~-~vG~~~~~~-~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g-~~~i~~~~~~~n~~~~~ 125 (158)
..+..+....++. +||.+.... +..+...+..-.|.-+.|-+|.|+.++.++.++.+..+ +...... ....++.
T Consensus 417 ~~h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~lty---ad~~aig 493 (720)
T KOG1472|consen 417 TSHHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTY---ADEGAIG 493 (720)
T ss_pred cccccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHh---hhhcccc
Confidence 3344444444444 888887764 34456677788899999999999999999999988764 3333322 3345777
Q ss_pred HHHhCCCEEeee
Q 042035 126 LYKKFGFQVDAL 137 (158)
Q Consensus 126 ~y~~~Gf~~~~~ 137 (158)
.+++.||...-.
T Consensus 494 yfkkqgfs~ei~ 505 (720)
T KOG1472|consen 494 YFKKQGFSKEIK 505 (720)
T ss_pred cccCccchhhcc
Confidence 888899875443
No 206
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=46.95 E-value=40 Score=19.51 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=20.6
Q ss_pred CccEEEEEEcCCChhhHHHHHhC----CCEEeeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYKKF----GFQVDALI 138 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~~----Gf~~~~~~ 138 (158)
|+.++.+.+.. -.++.+||++. ||+.....
T Consensus 1 ~i~Hv~i~v~d-~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 1 GIHHVELTVRD-LERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred CCceEEEEeCC-HHHHHHHHHHHHhhcCCEEEEee
Confidence 34566666643 46789999874 99987653
No 207
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=46.48 E-value=45 Score=20.45 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 107 RTVLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 107 ~g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
.++..+.+.|. +-.+++.||+. +||+....
T Consensus 8 ~~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 8 QGLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred CccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 35777877765 34678899976 99987653
No 208
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=45.79 E-value=59 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=24.7
Q ss_pred HhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 105 RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 105 ~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
+..|++++.+-+ .|+.-+.-.+.+|.++.++.+
T Consensus 377 ~dLGI~~irLLT--NNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 377 RDLGVRTMRLMT--NNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHcCCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 556888887764 466677778899999987664
No 209
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=45.76 E-value=39 Score=19.03 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=19.3
Q ss_pred cEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 110 LRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 110 ~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
..+.+.+. +-..+++||++ +||+.....
T Consensus 4 ~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 4 AYAELEVP-DLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred eEEEEecC-CHHHHHHHHHhccCcEEEeec
Confidence 44554443 34678999988 999988654
No 210
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.57 E-value=66 Score=23.45 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=24.4
Q ss_pred HHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 103 KCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 103 ~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
..+..|++++.+-+ |+.-+.-.+.+|.++.++.
T Consensus 330 IL~~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 330 ILRDLGVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHcCCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 34667888888875 5666677788888888654
No 211
>PRK08815 GTP cyclohydrolase; Provisional
Probab=45.41 E-value=68 Score=23.47 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=31.5
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
.++.|.-|+|.+++ ++.|++++.+-+. |+.-..-.+.+|.++.+..+
T Consensus 295 ~~D~RdygigAQIL-------~dLGV~kirLLTn--np~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 295 GPDERRYGSAVAML-------RGLGITRVRLLTN--NPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred CccceeeeHHHHHH-------HHcCCCeEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 44455555555554 4568888887753 55566677899999987664
No 212
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=45.36 E-value=62 Score=18.90 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=35.3
Q ss_pred cCCcHHH-HHHHHHHHHHHhCCccEEEEEEcC---CChhhHHHHHhCCCEEeeee
Q 042035 88 RGQGHGE-ALLEAAIKKCRTRTVLRITLHVDP---FRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 88 r~~Gig~-~l~~~~~~~~~~~g~~~i~~~~~~---~n~~~~~~y~~~Gf~~~~~~ 138 (158)
|+.-++. .+.+.+.+.+++.|+..+.+.+.. ...++++.+.+.|+.+....
T Consensus 39 k~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~ 93 (110)
T PF00411_consen 39 KSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSIT 93 (110)
T ss_dssp GSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEE
Confidence 3444444 445667788888899988888654 34567788888999876543
No 213
>PRK11478 putative lyase; Provisional
Probab=45.03 E-value=29 Score=20.11 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=19.3
Q ss_pred CccEEEEEEcCCChhhHHHHH-hCCCEEee
Q 042035 108 TVLRITLHVDPFRTPAVNLYK-KFGFQVDA 136 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~-~~Gf~~~~ 136 (158)
++.++.+.|.. -..+.+||. .+||+...
T Consensus 6 ~i~hv~l~v~D-~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 6 QVHHIAIIATD-YAVSKAFYCDILGFTLQS 34 (129)
T ss_pred eecEEEEEcCC-HHHHHHHHHHHhCCEecc
Confidence 45666666533 467899996 59999753
No 214
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=44.94 E-value=97 Score=21.02 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=55.5
Q ss_pred hHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 38 LARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
+.+.+.+.......+.+=++.+|++||-........-.... .++ +|...-++..+-++.++++..|+.-+-+..
T Consensus 115 ~~~aY~~LH~~G~AHSVE~W~~~~LvGGlYGv~iG~~F~GE-SMF----s~~~nASKvAl~~L~~~L~~~g~~liD~Q~- 188 (233)
T PRK00301 115 IIEAYLELHELGHAHSVEVWQGGELVGGLYGVALGRAFFGE-SMF----SRATDASKVALAALVEHLRRHGFKLIDCQV- 188 (233)
T ss_pred HHHHHHHHHHcCceEEEEEEECCEEEeeeeccccCCEEeec-ccc----cCCCChHHHHHHHHHHHHHHCCceEEEECC-
Confidence 34455555555556667777899999876543222211111 222 344667788888999999999987555443
Q ss_pred CCChhhHHHHHhCCCEEeee
Q 042035 118 PFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 118 ~~n~~~~~~y~~~Gf~~~~~ 137 (158)
.| .-.+++|...+.+
T Consensus 189 -~t----~HL~slGa~~i~R 203 (233)
T PRK00301 189 -LN----PHLASLGAREIPR 203 (233)
T ss_pred -CC----HHHHhcCCEEcCH
Confidence 33 4577888887763
No 215
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.63 E-value=35 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=29.4
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
+...|.--|..-+..++.+|.+.|++.+.+...+
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS 74 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFS 74 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4456778899999999999999999999998776
No 216
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=44.57 E-value=51 Score=18.99 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=19.5
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
+..+.+.|.. =..++.||++ +||+....
T Consensus 2 i~hv~l~v~d-~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVSD-LERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEECC-HHHHHHHHHHhcCCEEEEe
Confidence 4556666533 3678999975 99988654
No 217
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=44.43 E-value=70 Score=22.26 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEcCCC-----------hhhHHHHHhCCCEE
Q 042035 94 EALLEAAIKKCRTRTVLRITLHVDPFR-----------TPAVNLYKKFGFQV 134 (158)
Q Consensus 94 ~~l~~~~~~~~~~~g~~~i~~~~~~~n-----------~~~~~~y~~~Gf~~ 134 (158)
..-+..++++|+++|+.. .+.+.... ..+.+.|++.|-+=
T Consensus 72 ~~dl~elv~Ya~~KgVgi-~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~G 122 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVGI-WLWYHSETGGNVANLEKQLDEAFKLYAKWGVKG 122 (273)
T ss_dssp T--HHHHHHHHHHTT-EE-EEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEE
T ss_pred ccCHHHHHHHHHHcCCCE-EEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCE
Confidence 345666777777776543 33333222 44556666666553
No 218
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.92 E-value=65 Score=23.51 Aligned_cols=32 Identities=9% Similarity=-0.070 Sum_probs=22.4
Q ss_pred HHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 104 CRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 104 ~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.+..|++++.+- .|+.-+.-.+.+|.++.++.
T Consensus 334 Lr~LGV~kirLL---nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 334 LQDLGVGKLRHL---GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHcCCCEEEEC---CCchhhhhhhhCCcEEEEEe
Confidence 356688888877 45566666778888887654
No 219
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=43.48 E-value=73 Score=23.56 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=24.1
Q ss_pred HhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 105 RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 105 ~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
+..|+.++.+-+ .|+.-+.-.+.+|.++.++.+
T Consensus 343 ~~LGv~~irLLT--nnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 343 VDLGVRSMRLLT--NNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHcCCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 556888887765 466666777899999987664
No 220
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=43.47 E-value=38 Score=19.52 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=18.8
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
+..+.+.|.. -.+|.+||+. +||+....
T Consensus 3 l~~v~l~v~D-l~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 3 LGYLGVESSD-LDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred ccEEEEEeCC-HHHHHHHHHhccCceeccC
Confidence 3455666543 3568999966 89987543
No 221
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=43.38 E-value=61 Score=18.27 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=14.9
Q ss_pred HHHhcCCceEEEEE-ECCeEEEEEEEe
Q 042035 44 EELKKKNSGLLYIQ-IHGQVVGYVMYA 69 (158)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~~~vG~~~~~ 69 (158)
+.+...+...+.+. .+|+++|++...
T Consensus 83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~ 109 (114)
T cd04619 83 QVMKQRGLKNIPVVDENARPLGVLNAR 109 (114)
T ss_pred HHHHHcCCCeEEEECCCCcEEEEEEhH
Confidence 33334444444444 468999998753
No 222
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.97 E-value=42 Score=22.65 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=29.1
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS 60 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5567778899999999999999999999888654
No 223
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=42.86 E-value=43 Score=22.52 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=29.2
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFS 53 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYAFS 53 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5567888899999999999999999999888654
No 224
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=42.59 E-value=1.3e+02 Score=21.81 Aligned_cols=66 Identities=8% Similarity=-0.020 Sum_probs=40.4
Q ss_pred EEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChh-hHHHHHhCCCEEeeeeccccccCCcceEEE
Q 042035 79 TKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTP-AVNLYKKFGFQVDALIQGYYSADRPAYRMY 152 (158)
Q Consensus 79 ~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~-~~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~ 152 (158)
..+.+||.+ .|+...+++.+.+ .. .-+++.+++...+ -.+.+.+ ||+......-...+....+...
T Consensus 290 D~v~lDPPR--~G~~~~~l~~l~~---~~--~ivyvSC~p~tlarDl~~L~~-gY~l~~v~~~DmFPqT~HvE~v 356 (362)
T PRK05031 290 STIFVDPPR--AGLDDETLKLVQA---YE--RILYISCNPETLCENLETLSQ-THKVERFALFDQFPYTHHMECG 356 (362)
T ss_pred CEEEECCCC--CCCcHHHHHHHHc---cC--CEEEEEeCHHHHHHHHHHHcC-CcEEEEEEEcccCCCCCcEEEE
Confidence 458899994 6888888888765 12 3577777663322 1344444 9998876654344554444433
No 225
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=41.81 E-value=24 Score=21.34 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.3
Q ss_pred EEeccCccCCcHHHHHHHHHHH
Q 042035 81 LAVKENYRGQGHGEALLEAAIK 102 (158)
Q Consensus 81 ~~v~~~~r~~Gig~~l~~~~~~ 102 (158)
+.+||+++|.-|.+.|.+++-.
T Consensus 60 ILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 60 ILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEeCCCcchHHHHHHHHHHhcc
Confidence 6789999999999999888765
No 226
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=41.58 E-value=53 Score=19.95 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=25.0
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhC-CccEEEEEEcCC
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTR-TVLRITLHVDPF 119 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~-g~~~i~~~~~~~ 119 (158)
-..|+|+|+....+...-..+... .-+.+.+...++
T Consensus 13 mq~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~D 49 (135)
T COG3543 13 MQGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPD 49 (135)
T ss_pred eeecccccCCHHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 356999999999998887777554 334466554443
No 227
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=41.07 E-value=2e+02 Score=23.69 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=53.4
Q ss_pred CCeEEEEEEEeccC--ccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 73 SLSASITKLAVKEN--YRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 73 ~~~~~i~~~~v~~~--~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
.+...+..+.-|++ .+|++....++..-+..|++.|++.|...-.+.++.-..+..++|+-+..+..
T Consensus 297 Gkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~ 365 (808)
T COG3250 297 GKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAM 365 (808)
T ss_pred CeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecc
Confidence 34566777777776 57777888888888999999999999999667777777777899998887654
No 228
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=40.96 E-value=1.1e+02 Score=20.84 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeeccc
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQGY 141 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~ 141 (158)
|+-|+....+.+.+.|.+++.+-|+. +.-...-+++|++..-+..++
T Consensus 27 GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~G~~avmT~~~h 73 (247)
T COG1212 27 GKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAFGGEAVMTSKDH 73 (247)
T ss_pred CchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHhCCEEEecCCCC
Confidence 45678888888888888888877754 556677788888877655443
No 229
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=39.97 E-value=1e+02 Score=20.00 Aligned_cols=46 Identities=13% Similarity=0.282 Sum_probs=33.6
Q ss_pred ccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 84 KENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 84 ~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.+++|.-|+|.++++ +.|++.+.+-+. |+.-..-...+|-++++..
T Consensus 123 ~~d~R~yGiGAQIL~-------dLGv~~mrLLs~--~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 123 PADARDYGLAAQILR-------DLGIKSVRLLTN--NPDKIDALEGYGIEVVERV 168 (193)
T ss_pred CccccchHHHHHHHH-------HcCCCeEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 556899999998874 568888888754 3445555667888888765
No 230
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.78 E-value=50 Score=18.81 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=17.8
Q ss_pred cEEEEEEcCCChhhHHHHHh-CCCEEee
Q 042035 110 LRITLHVDPFRTPAVNLYKK-FGFQVDA 136 (158)
Q Consensus 110 ~~i~~~~~~~n~~~~~~y~~-~Gf~~~~ 136 (158)
.++.+.|.. -.++++||++ +||+...
T Consensus 3 ~Hi~l~v~d-l~~s~~FY~~~lg~~~~~ 29 (125)
T cd07241 3 EHVAIWTKD-LERMKAFYVTYFGATSNE 29 (125)
T ss_pred eEEEEEecC-HHHHHHHHHHHhCCEeec
Confidence 355555543 3678999977 8998754
No 231
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=39.55 E-value=55 Score=18.76 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=20.1
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
+..+.+.|.. -.++.+||.. +||+.....
T Consensus 3 i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 3 IGAVTLRVAD-LERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEEECC-HHHHHHHHHhccCcEEEEcC
Confidence 3456666543 3568999975 999988753
No 232
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=39.52 E-value=56 Score=19.29 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=20.7
Q ss_pred CccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
++..+.+.|. +-..+++||++ +||.....
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 5667777764 34678999976 99977543
No 233
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=38.53 E-value=37 Score=25.65 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=28.0
Q ss_pred HhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 105 RTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 105 ~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
...|-+.|.+.|...|+.-+.|.++.||-...
T Consensus 330 ~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~ 361 (542)
T KOG2499|consen 330 FHLGGDEVSTPCWKSNPEIQDFMRKKGFGLDT 361 (542)
T ss_pred eecCCceeecccccCChHHHHHHHhCCCCchH
Confidence 45688999999999999999999999997654
No 234
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=37.83 E-value=71 Score=18.66 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=18.9
Q ss_pred cEEEEEEcCCChhhHHHHHh-CCCEEeeeec
Q 042035 110 LRITLHVDPFRTPAVNLYKK-FGFQVDALIQ 139 (158)
Q Consensus 110 ~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~~ 139 (158)
.++.+.+.. -.++.+||.+ +||+......
T Consensus 3 ~hv~l~v~D-~~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 3 SHVVLYVRD-LEAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred eEEEEEecC-HHHHHHHHHHhcCCEEEeecc
Confidence 345554433 3568899976 9999876543
No 235
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.67 E-value=48 Score=22.55 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=28.7
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
+...|.--|..-+..++.+|.+.|++.+.+.+.
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaF 67 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTF 67 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 456677789999999999999999999998876
No 236
>PF13289 SIR2_2: SIR2-like domain
Probab=37.57 E-value=90 Score=18.53 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=14.0
Q ss_pred EEEEEEcCCC-hhhHHHHHhCCCEE
Q 042035 111 RITLHVDPFR-TPAVNLYKKFGFQV 134 (158)
Q Consensus 111 ~i~~~~~~~n-~~~~~~y~~~Gf~~ 134 (158)
.+++.+.... .....++++.|.++
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 118 RHYIVIPDPDDENEREFLEKYGIEV 142 (143)
T ss_pred cEEEEEcCCchHHHHHHHHHcCCEE
Confidence 3444444433 56677777777765
No 237
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.50 E-value=59 Score=22.13 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=28.8
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS 62 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 4566777899999999999999999999888654
No 238
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.27 E-value=58 Score=22.04 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=28.9
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..+.++|.+.|++.+.+.+.+
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS 57 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFS 57 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 5566778899999999999999999999888654
No 239
>PLN02300 lactoylglutathione lyase
Probab=37.16 E-value=43 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.310 Sum_probs=24.8
Q ss_pred HHHHHHHh--CCccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 99 AAIKKCRT--RTVLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 99 ~~~~~~~~--~g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
.+++|.+. .++..+.+.|.. -..+++||++ +||+....
T Consensus 13 ~~~~~~~~~i~~l~Hv~l~V~D-le~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 13 DLLEWPKKDKRRMLHVVYRVGD-LDRTIKFYTECLGMKLLRK 53 (286)
T ss_pred hhhcCCccccceEEEEEEEeCC-HHHHHHHHHHhcCCEEEEe
Confidence 34455422 256677776654 3679999975 89998653
No 240
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=36.58 E-value=95 Score=21.24 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=34.8
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHH-HhCCccEEEEEEcC
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKC-RTRTVLRITLHVDP 118 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~-~~~g~~~i~~~~~~ 118 (158)
.+++..-+-|.|--.|++++.++....+. .+.|-+.|.+..-.
T Consensus 144 tYlgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaIS 187 (259)
T COG0623 144 TYLGSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAIS 187 (259)
T ss_pred EeccceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeec
Confidence 35566778999999999999999999986 56688888877443
No 241
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.47 E-value=1.8e+02 Score=21.57 Aligned_cols=54 Identities=17% Similarity=0.066 Sum_probs=37.8
Q ss_pred eEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEE
Q 042035 61 QVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLH 115 (158)
Q Consensus 61 ~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~ 115 (158)
.+++.+.+... ++.+....-+.+++|+.-+-...|.-+++.+|+++|+...-+.
T Consensus 303 ~~la~~l~~~~-g~~~~yly~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~ 356 (406)
T PF02388_consen 303 IPLAGALFIYY-GDEAYYLYGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFG 356 (406)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred ceEEEEEEEEE-CCEEEEEECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEee
Confidence 35555444433 3444444577899999999888888899999999999877765
No 242
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=36.36 E-value=61 Score=21.72 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=28.7
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS 54 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFS 54 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5566777899999999999999999999888654
No 243
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=36.35 E-value=39 Score=18.83 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=15.2
Q ss_pred ChhhHHHHHh-CCCEEeeee
Q 042035 120 RTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 120 n~~~~~~y~~-~Gf~~~~~~ 138 (158)
-..+++||++ +||+.....
T Consensus 9 ~~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 9 IERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHHhccCeEEEEEc
Confidence 3578999998 999987644
No 244
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=36.29 E-value=65 Score=18.45 Aligned_cols=30 Identities=7% Similarity=0.182 Sum_probs=20.5
Q ss_pred CccEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
++..+.+.|.. -.++.+||++ +||+.....
T Consensus 6 ~i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~~ 36 (121)
T cd09013 6 HLAHVELLTPK-PEESLWFFTDVLGLEETGRE 36 (121)
T ss_pred EeeEEEEEeCC-HHHHHHHHHhCcCCEEEeec
Confidence 34566666543 3678999976 799987653
No 245
>PRK10291 glyoxalase I; Provisional
Probab=35.89 E-value=43 Score=19.57 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=14.1
Q ss_pred ChhhHHHHHh-CCCEEeee
Q 042035 120 RTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 120 n~~~~~~y~~-~Gf~~~~~ 137 (158)
-.+++.||++ +||+....
T Consensus 7 le~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHHhccCCEEEEe
Confidence 4679999965 99997653
No 246
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.79 E-value=52 Score=22.57 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=28.7
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS 72 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCKDWGIKALTAYAFS 72 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5566777899999999999999999999888654
No 247
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=35.74 E-value=35 Score=19.23 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=13.9
Q ss_pred CChhhHHHHHh-CCCEEee
Q 042035 119 FRTPAVNLYKK-FGFQVDA 136 (158)
Q Consensus 119 ~n~~~~~~y~~-~Gf~~~~ 136 (158)
+-..+..||++ +||+...
T Consensus 10 Dl~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 10 DPEAAAAFYADVLGLDVVM 28 (112)
T ss_pred CHHHHHHHHHHhcCceEEE
Confidence 33568999986 9999763
No 248
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=35.65 E-value=96 Score=18.27 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHHhCCcc---EEEEEEcCC---ChhhHHHH
Q 042035 91 GHGEALLEAAIKKCRTRTVL---RITLHVDPF---RTPAVNLY 127 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~---~i~~~~~~~---n~~~~~~y 127 (158)
+|...+++.+.+.|++.|.. +|.+.+..- ++.+.+|.
T Consensus 5 si~~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~f~ 47 (114)
T PRK03681 5 TLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFC 47 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCccccCHHHHHHH
Confidence 67888999999999887644 555554432 24455554
No 249
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.59 E-value=52 Score=22.17 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=28.0
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
+...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS 47 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 47 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 4455667888999999999999999999888654
No 250
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=35.40 E-value=1.3e+02 Score=19.81 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=34.9
Q ss_pred CceEEEEEECCeEEEEEEEeecC----CCeEEEEEE-EeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 50 NSGLLYIQIHGQVVGYVMYAWPT----SLSASITKL-AVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~----~~~~~i~~~-~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
....++...+|++.||+.+.... .....+..+ +.+++. -+.|+..+..+ ...+..+.+...
T Consensus 24 ~~~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~A-----~~aLl~fl~~h--~~~~~~v~~~~p 89 (218)
T PF13530_consen 24 RGYAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRELVALDPEA-----YRALLAFLASH--RDQVDEVEWNRP 89 (218)
T ss_dssp SEEEEEEECTSEEEEEEEEEEET-SSSTTEEEEEEEEESSHHH-----HHHHHHHHHTC--CTTESEEEEEES
T ss_pred ceEEEEECCCCCeeEEEEEEEcccCCCCceEEEEEEEeCCHHH-----HHHHHHHHHhh--hCcceEEEEEcC
Confidence 34445555599999999998644 256666654 444442 23344443332 124677777543
No 251
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=35.13 E-value=19 Score=19.67 Aligned_cols=20 Identities=20% Similarity=0.472 Sum_probs=16.5
Q ss_pred EEEEEEcCCChhhHHHHHhC
Q 042035 111 RITLHVDPFRTPAVNLYKKF 130 (158)
Q Consensus 111 ~i~~~~~~~n~~~~~~y~~~ 130 (158)
.+++++.+.+..|+..|...
T Consensus 19 ~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 19 NLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHhcCCCCcHHHHHHHHHH
Confidence 46889999999999888654
No 252
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=35.06 E-value=53 Score=18.76 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=19.8
Q ss_pred CccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
++..+.+.|.. -..+++||.+ +||+....
T Consensus 4 ~i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTD-LEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCC-HHHHHHHHHhccCCEEecc
Confidence 34566666543 4668999976 99997653
No 253
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=34.92 E-value=31 Score=22.43 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
+..++.+..+++|.....++ ++.--..+.+.+||...++..+
T Consensus 39 iA~ale~~L~~~G~~~y~LD---GDnvR~gL~~dLgFs~edR~en 80 (197)
T COG0529 39 IANALEEKLFAKGYHVYLLD---GDNVRHGLNRDLGFSREDRIEN 80 (197)
T ss_pred HHHHHHHHHHHcCCeEEEec---ChhHhhcccCCCCCChHHHHHH
Confidence 45556666788898877776 3333456788899988776544
No 254
>PLN02979 glycolate oxidase
Probab=34.70 E-value=94 Score=22.72 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCE
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~ 133 (158)
.+...+++.|.+.|++.+.++++..-..-+.--.+.||.
T Consensus 134 ~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~ 172 (366)
T PLN02979 134 NVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFT 172 (366)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCC
Confidence 356677777888899999999987655444334466664
No 255
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=34.69 E-value=90 Score=17.71 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=14.9
Q ss_pred HHHHhcCCceEEEEE-ECCeEEEEEEE
Q 042035 43 DEELKKKNSGLLYIQ-IHGQVVGYVMY 68 (158)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~~~~vG~~~~ 68 (158)
...+...+...+.+. ++|+++|.+..
T Consensus 88 ~~~m~~~~~~~l~Vvd~~~~~~Givt~ 114 (120)
T cd04641 88 FDLIVKARVHRLVVVDENKRVEGIISL 114 (120)
T ss_pred HHHHHhcCccEEEEECCCCCEEEEEEH
Confidence 344444444444444 45889998864
No 256
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=34.61 E-value=72 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=14.0
Q ss_pred ceEEEEEECCeEEEEEEEe
Q 042035 51 SGLLYIQIHGQVVGYVMYA 69 (158)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~ 69 (158)
..+.++..||+++|+....
T Consensus 163 d~viVv~~ng~~vGVg~a~ 181 (202)
T COG5270 163 DEVIVVSENGRVVGVGIAK 181 (202)
T ss_pred CeEEEEecCCEEEEEEEEe
Confidence 4556666788999888775
No 257
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=34.61 E-value=65 Score=18.40 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=16.1
Q ss_pred EEEEEcCCChhhHHHHHh-CCCEEee
Q 042035 112 ITLHVDPFRTPAVNLYKK-FGFQVDA 136 (158)
Q Consensus 112 i~~~~~~~n~~~~~~y~~-~Gf~~~~ 136 (158)
+.+.|. +-.++.+||++ +||....
T Consensus 4 ~~l~v~-D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 4 TIIYVE-DVEKTLEFYERAFGFERRF 28 (125)
T ss_pred EEEEEc-CHHHHHHHHHHhhCCeEEe
Confidence 344443 33678999977 8998754
No 258
>PRK06724 hypothetical protein; Provisional
Probab=34.54 E-value=73 Score=18.92 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=20.5
Q ss_pred CccEEEEEEcCCChhhHHHHHh----CCCEEe
Q 042035 108 TVLRITLHVDPFRTPAVNLYKK----FGFQVD 135 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~~----~Gf~~~ 135 (158)
+++++.+.|.. -.++++||++ +||+..
T Consensus 7 ~i~Hv~l~V~D-le~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVAN-LEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCC-HHHHHHHHHHHHhhCCcEEe
Confidence 57788888744 3678899987 688875
No 259
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=34.33 E-value=46 Score=19.05 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=19.5
Q ss_pred cEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 110 LRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 110 ~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
..+.+.|. +-.++.+||.+ +||+.....
T Consensus 2 ~hv~l~v~-d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 2 DHIGIAVP-DLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred cEEEEEeC-CHHHHHHHHHHhhCCCCcccc
Confidence 35666664 34678899987 999987543
No 260
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=34.31 E-value=60 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=29.1
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.-.|...+..++++|.+.|++.+.+...+
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFS 73 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICIKLKIKILSVFSFS 73 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5566888999999999999999999999888653
No 261
>PRK01346 hypothetical protein; Provisional
Probab=34.11 E-value=1.9e+02 Score=21.20 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=27.6
Q ss_pred EECCeEEEEEEEeecCC-------CeEEEEEEEe-ccCccCCcHHHHHHHHHHHHHHhCCccEEEE
Q 042035 57 QIHGQVVGYVMYAWPTS-------LSASITKLAV-KENYRGQGHGEALLEAAIKKCRTRTVLRITL 114 (158)
Q Consensus 57 ~~~~~~vG~~~~~~~~~-------~~~~i~~~~v-~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~ 114 (158)
.++|+++|++.+..... ....+..++. +|+. -..|+..+..+ . -+..+..
T Consensus 216 ~~~g~~~Gy~~y~~~~~~~~~~~~~~l~V~e~~~~~~~a-----~~~L~~fl~~~--~-~~~~v~~ 273 (411)
T PRK01346 216 PDDGEVDGYALYRVDDTWGFRGPDGTVEVEELVAATPAA-----YAALWRFLLSL--D-LVERVRA 273 (411)
T ss_pred cCCCcccEEEEEEEcCcccccCCCceEEEEEEEeCCHHH-----HHHHHHHHhhC--c-CeeEEEE
Confidence 34899999999875432 3455655543 3332 23455555443 1 2555554
No 262
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.10 E-value=77 Score=21.72 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=28.2
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
+...|.--|..-+..++.+|.+.|++.+.+.+.+
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS 68 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFS 68 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 4455777889999999999999999999888653
No 263
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=33.62 E-value=1.8e+02 Score=20.88 Aligned_cols=79 Identities=8% Similarity=0.115 Sum_probs=43.8
Q ss_pred CCeEEEEEEEeecC-----------CCeEEEEEEEeccCccCCcHH-----------HHHHHHHHHHHHhCCccEEEEEE
Q 042035 59 HGQVVGYVMYAWPT-----------SLSASITKLAVKENYRGQGHG-----------EALLEAAIKKCRTRTVLRITLHV 116 (158)
Q Consensus 59 ~~~~vG~~~~~~~~-----------~~~~~i~~~~v~~~~r~~Gig-----------~~l~~~~~~~~~~~g~~~i~~~~ 116 (158)
+|+|.+|..++..+ -..+++...+.+..+.. +. ..++..++-.|+..|++.+-+-+
T Consensus 319 ~gkItdFfsFyslp~t~i~n~kykdiq~gYLYYya~d~~~kd--~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt 396 (451)
T COG5092 319 NGKITDFFSFYSLPFTTIENKKYKDIQGGYLYYYAGDDQFKD--FDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALT 396 (451)
T ss_pred CCccccceEEEeccceeecCccccccceeEEEEEccCccccc--cChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhh
Confidence 78888888776311 12345554444443222 22 22333444556666888776666
Q ss_pred cCCChhhHHHHHhCCCEEeeeecccc
Q 042035 117 DPFRTPAVNLYKKFGFQVDALIQGYY 142 (158)
Q Consensus 117 ~~~n~~~~~~y~~~Gf~~~~~~~~~~ 142 (158)
.-+|. -|...++|-.-.-..+||
T Consensus 397 ~~dN~---lFL~dLkFg~GdGflnyY 419 (451)
T COG5092 397 MMDNS---LFLADLKFGCGDGFLNYY 419 (451)
T ss_pred hccch---hHHHhcCccCCCceeEEE
Confidence 65653 367788887654444443
No 264
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=33.34 E-value=82 Score=17.93 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=13.8
Q ss_pred ChhhHHHHHh-CCCEEeee
Q 042035 120 RTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 120 n~~~~~~y~~-~Gf~~~~~ 137 (158)
-.++++||++ +||+....
T Consensus 10 l~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 10 LEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred HHHHHHHHHHhcCCEEeec
Confidence 4678999975 99988654
No 265
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=33.32 E-value=93 Score=17.45 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEe
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVD 135 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~ 135 (158)
++..+...+++.|....... .++...++++..|+...
T Consensus 63 ~L~~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 63 VLLGRYKQVRRVGGQLVLVS---VSPRVARLLDITGLLRI 99 (108)
T ss_pred HHHHHHHHHHhcCCEEEEEe---CCHHHHHHHHHhChhhe
Confidence 45556666677775433332 57788899999998753
No 266
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.04 E-value=66 Score=22.04 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=28.7
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS 76 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 4566777899999999999999999999888654
No 267
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=33.03 E-value=79 Score=18.63 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHhCCccE---EEEEEc
Q 042035 91 GHGEALLEAAIKKCRTRTVLR---ITLHVD 117 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~---i~~~~~ 117 (158)
+|+..+++.+.+.+++.|..+ |.+.+.
T Consensus 5 sia~~iv~~v~~~a~~~~~~~V~~V~l~iG 34 (115)
T TIGR00100 5 SLAEAMLEIVEEQAEKHQAKKVTRVTLEIG 34 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEc
Confidence 678889999999888776554 555544
No 268
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.59 E-value=78 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=28.2
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS 58 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCANHKLECLTLYAFS 58 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4456777888999999999999999999888654
No 269
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.56 E-value=70 Score=19.95 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCC
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGF 132 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf 132 (158)
|+-|++++++.+...+++.+.+.+...+......+...|.
T Consensus 25 g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~ 64 (186)
T cd04182 25 GKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPV 64 (186)
T ss_pred CeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCCCe
Confidence 4678888888887767778877765544333333444454
No 270
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=32.56 E-value=47 Score=18.61 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=15.2
Q ss_pred ChhhHHHHHh-CCCEEeeee
Q 042035 120 RTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 120 n~~~~~~y~~-~Gf~~~~~~ 138 (158)
-.++.+||.+ +||+.....
T Consensus 9 ~~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 9 QDKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHHhccCeEEEEee
Confidence 3568899987 999988654
No 271
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.48 E-value=70 Score=21.78 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=28.6
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
+...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS 63 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFS 63 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4456777899999999999999999999888654
No 272
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=32.42 E-value=78 Score=18.09 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=17.8
Q ss_pred EEEEEEcCCChhhHHHHHh----CCCEEeeee
Q 042035 111 RITLHVDPFRTPAVNLYKK----FGFQVDALI 138 (158)
Q Consensus 111 ~i~~~~~~~n~~~~~~y~~----~Gf~~~~~~ 138 (158)
.+.+.| .+-.+++.||++ +||......
T Consensus 3 hv~l~v-~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 3 HVTLGV-NDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEEec-CcHHHHHHHHHHHHhhcCceEEeec
Confidence 444444 233668999987 599987544
No 273
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=32.26 E-value=30 Score=18.91 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=18.7
Q ss_pred EEEeccCccCCcHHHHHHHHHHH
Q 042035 80 KLAVKENYRGQGHGEALLEAAIK 102 (158)
Q Consensus 80 ~~~v~~~~r~~Gig~~l~~~~~~ 102 (158)
.+.++|+..|+.+.+.+.+.+..
T Consensus 49 IiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 49 IILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred EEEECCCHHHHHHHHHHHHHhcc
Confidence 47789999999999888877643
No 274
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.14 E-value=1.2e+02 Score=22.21 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
.+.+.+++.|...|++.+.++++..-..-+.-=.+.||..
T Consensus 128 ~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~ 167 (361)
T cd04736 128 ELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAI 167 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCC
Confidence 3556777778888999999999876544443344567753
No 275
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.09 E-value=60 Score=22.89 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=28.2
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
+...|.--|..-+..++++|.+.|++.+.+...
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaF 120 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAIELGIKWLSLYAF 120 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 445677778889999999999999999998876
No 276
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=31.94 E-value=98 Score=17.26 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHHHhcCCceEE-EEEECCeEEEEEEEe
Q 042035 43 DEELKKKNSGLL-YIQIHGQVVGYVMYA 69 (158)
Q Consensus 43 ~~~~~~~~~~~~-~~~~~~~~vG~~~~~ 69 (158)
...+...+...+ ++.++|+++|.+...
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 108 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLD 108 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhH
Confidence 344444444444 444478999988653
No 277
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=31.91 E-value=85 Score=18.51 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=19.3
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
+..+.+.|.. -..+++||++ +||+....
T Consensus 4 l~hi~l~v~d-l~~s~~FY~~vlGl~~~~~ 32 (134)
T cd08360 4 LGHVVLFVPD-VEAAEAFYRDRLGFRVSDR 32 (134)
T ss_pred eeEEEEEcCC-HHHHHHHHHHhcCCEEEEE
Confidence 4556666543 4678999965 89987654
No 278
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=31.88 E-value=92 Score=16.93 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
|-.++..+...+++.|.. +.+...++...++++..|+..
T Consensus 55 g~~~L~~l~~~~~~~g~~---v~i~~~~~~~~~~l~~~gl~~ 93 (99)
T cd07043 55 GLGVLLGAYKRARAAGGR---LVLVNVSPAVRRVLELTGLDR 93 (99)
T ss_pred hHHHHHHHHHHHHHcCCe---EEEEcCCHHHHHHHHHhCcce
Confidence 344555666677776654 333335678999999999864
No 279
>PF12294 DUF3626: Protein of unknown function (DUF3626); InterPro: IPR022074 This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.
Probab=31.76 E-value=19 Score=25.01 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.3
Q ss_pred EEEEEeccCccCCcHHHHHHHHHH
Q 042035 78 ITKLAVKENYRGQGHGEALLEAAI 101 (158)
Q Consensus 78 i~~~~v~~~~r~~Gig~~l~~~~~ 101 (158)
+..++++|.|||..++..+-..+.
T Consensus 191 VeaLVlDPsyrgT~ve~~~~~la~ 214 (297)
T PF12294_consen 191 VEALVLDPSYRGTEVEAAARALAR 214 (297)
T ss_pred hHHHhcCccccCChHHHHHHHHHH
Confidence 456899999999999886654433
No 280
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.42 E-value=89 Score=18.37 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHhCCc---cEEEEEEcCC---ChhhHHHH
Q 042035 91 GHGEALLEAAIKKCRTRTV---LRITLHVDPF---RTPAVNLY 127 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~---~~i~~~~~~~---n~~~~~~y 127 (158)
+|...+++.+.+.|++.|. .++.+.+..- ++.+.+|.
T Consensus 5 si~~~iv~~v~~~a~~~~~~rV~~V~l~iG~ls~v~pe~L~f~ 47 (113)
T PRK12380 5 SLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAVRFS 47 (113)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCccccCHHHHHHH
Confidence 6788899999999887764 4555554432 34455554
No 281
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=30.98 E-value=1.2e+02 Score=19.83 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
|+-|+.+.++.+...|+..+.+.+......-.....+.|.+.
T Consensus 25 gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~~~~~ 66 (229)
T cd02540 25 GKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEF 66 (229)
T ss_pred CccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCCCcEE
Confidence 467888888888888888877777654443344444455543
No 282
>PRK07758 hypothetical protein; Provisional
Probab=30.94 E-value=55 Score=18.67 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=17.4
Q ss_pred CCcHHHHHHHHHHHHHHhCCc
Q 042035 89 GQGHGEALLEAAIKKCRTRTV 109 (158)
Q Consensus 89 ~~Gig~~l~~~~~~~~~~~g~ 109 (158)
=+|+|.+-++.+.+.+.+.|+
T Consensus 72 iknlGkKSL~EIkekL~E~GL 92 (95)
T PRK07758 72 LHGMGPASLPKLRKALEESGL 92 (95)
T ss_pred ccCCCHHHHHHHHHHHHHcCC
Confidence 468999999999988888775
No 283
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=30.70 E-value=49 Score=22.09 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=25.8
Q ss_pred ccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 87 YRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 87 ~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
..|..-|..-+..+.++|.+.|++.+.+.+.+
T Consensus 17 ~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS 48 (223)
T PF01255_consen 17 SEGHRAGAEKLKEIVEWCLELGIKYLTVYAFS 48 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 45666788888999999999999999988765
No 284
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=30.58 E-value=76 Score=15.61 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=17.6
Q ss_pred CccCCcHHHHHHHHHHHHHHhC
Q 042035 86 NYRGQGHGEALLEAAIKKCRTR 107 (158)
Q Consensus 86 ~~r~~Gig~~l~~~~~~~~~~~ 107 (158)
=||+.-+|..|.+.+-+...+.
T Consensus 5 lYR~stlG~aL~dtLDeli~~~ 26 (49)
T PF02268_consen 5 LYRRSTLGIALTDTLDELIQEG 26 (49)
T ss_dssp GGGCSHHHHHHHHHHHHHHHTT
T ss_pred HHHcchHHHHHHHHHHHHHHcC
Confidence 3899999999998887776553
No 285
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=30.51 E-value=92 Score=18.23 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=13.8
Q ss_pred ChhhHHHHHh-CCCEEeee
Q 042035 120 RTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 120 n~~~~~~y~~-~Gf~~~~~ 137 (158)
-.+++.||++ +||+....
T Consensus 10 l~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 10 VAATAAFYTEVLGFRVSDR 28 (131)
T ss_pred HHHHHHHHHhcCCCEEEEE
Confidence 3568999976 99997654
No 286
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.45 E-value=64 Score=18.76 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=18.6
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
+..+.+.|.. -..+.+||++ +||+....
T Consensus 7 l~~v~l~v~d-~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 7 IAYVRLGTRD-LAGATRFATDILGLQVAER 35 (124)
T ss_pred eeEEEEeeCC-HHHHHHHHHhccCceeccC
Confidence 3455555543 3568999976 89997543
No 287
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=30.38 E-value=1.1e+02 Score=17.42 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=15.0
Q ss_pred HHHHhcCCceEEEEE-ECCeEEEEEEEe
Q 042035 43 DEELKKKNSGLLYIQ-IHGQVVGYVMYA 69 (158)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~~~~vG~~~~~ 69 (158)
.+.+...+...+.+. .+|+++|.+...
T Consensus 81 ~~~~~~~~~~~lpVvd~~~~l~Givt~~ 108 (113)
T cd04597 81 LNLMHEHNIRTLPVVDDDGTPAGIITLL 108 (113)
T ss_pred HHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence 333443343344444 468999988653
No 288
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=30.36 E-value=1e+02 Score=16.88 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=11.3
Q ss_pred eEEEEEECCeEEEEEEE
Q 042035 52 GLLYIQIHGQVVGYVMY 68 (158)
Q Consensus 52 ~~~~~~~~~~~vG~~~~ 68 (158)
...++..+|+++|++..
T Consensus 85 ~~~Vv~~~g~~~Gvi~~ 101 (107)
T cd04610 85 KLPVVDENNNLVGIITN 101 (107)
T ss_pred eEeEECCCCeEEEEEEH
Confidence 34444456899999865
No 289
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=30.32 E-value=1e+02 Score=17.04 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=11.8
Q ss_pred ceEEEEEECCeEEEEEEE
Q 042035 51 SGLLYIQIHGQVVGYVMY 68 (158)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~ 68 (158)
....++..+++++|++..
T Consensus 91 ~~~~Vv~~~~~~iG~it~ 108 (114)
T cd04604 91 TALPVVDDNGRPVGVLHI 108 (114)
T ss_pred CEEEEECCCCCEEEEEEH
Confidence 344444447899998864
No 290
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=30.12 E-value=1.1e+02 Score=17.10 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=17.5
Q ss_pred HHHHHhcCCceEEEEEECCeEEEEEEEe
Q 042035 42 FDEELKKKNSGLLYIQIHGQVVGYVMYA 69 (158)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 69 (158)
....+...+...+.+..+|+++|.+...
T Consensus 73 ~~~~~~~~~~~~~pVv~~~~~~Gvvt~~ 100 (105)
T cd04591 73 VHQLFRKLGLRHLLVVDEGRLVGIITRK 100 (105)
T ss_pred HHHHHHHcCCCEEEEEECCeEEEEEEhh
Confidence 3344444444455555789999998753
No 291
>CHL00041 rps11 ribosomal protein S11
Probab=29.97 E-value=1.3e+02 Score=17.90 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=38.2
Q ss_pred EeccCccCCcHHHH-HHHHHHHHHHhCCccEEEEEEc---CCChhhHHHHHhCCCEEeeee
Q 042035 82 AVKENYRGQGHGEA-LLEAAIKKCRTRTVLRITLHVD---PFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 82 ~v~~~~r~~Gig~~-l~~~~~~~~~~~g~~~i~~~~~---~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
...-..+..-++.. +.+.+.+.+.+.|+..+.+.+. +..+.+++-+++.|..+....
T Consensus 46 gfKg~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~ 106 (116)
T CHL00041 46 GFKGARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIR 106 (116)
T ss_pred eeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 33334444445544 4556778888889999888864 445667888888899876543
No 292
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=29.85 E-value=1.6e+02 Score=23.04 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
.+++.+.+.++..|...-.+.....++....++..+||+......
T Consensus 482 ~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~ 526 (565)
T TIGR01417 482 RLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSA 526 (565)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEECh
Confidence 477788888888886544334566889999999999999876443
No 293
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=29.81 E-value=1.3e+02 Score=19.73 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=31.4
Q ss_pred EEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 80 ~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
.+-|+|+|+|..+.+.--..|....++.-+....+.+.+
T Consensus 144 hFpv~p~F~g~SY~~Ry~ilc~rLv~e~lY~aa~l~~s~ 182 (196)
T PF04555_consen 144 HFPVDPEFKGASYLKRYEILCERLVQERLYTAACLITSP 182 (196)
T ss_pred CCCccHHhcCCcHHHHHHHHHHHHHHhcccceeEEEEec
Confidence 377999999999999998888888888767666665544
No 294
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.77 E-value=71 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=27.5
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
+...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 62 ~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 62 QREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 3345667788899999999999999999887553
No 295
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.75 E-value=87 Score=15.97 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=16.4
Q ss_pred cEEEEEEcCCCh-hhHHHHHhCCCEEee
Q 042035 110 LRITLHVDPFRT-PAVNLYKKFGFQVDA 136 (158)
Q Consensus 110 ~~i~~~~~~~n~-~~~~~y~~~Gf~~~~ 136 (158)
..+.+.+...+. ...+..++.||++..
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 344555544444 667777888887653
No 296
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=29.49 E-value=1.3e+02 Score=19.06 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 92 HGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 92 ig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+++.++..+...|...+-..|.+. ..+..|.+++|+...|
T Consensus 6 ~pRLiL~~l~TeAvrt~sr~I~lG-----~S~~~flr~lG~~~tG 45 (161)
T PF04796_consen 6 YPRLILAWLCTEAVRTKSREIELG-----RSLSEFLRRLGLSPTG 45 (161)
T ss_pred hhHHHHHHHHHHHhccCCceEeec-----cCHHHHHHHhCCCCCC
Confidence 567888899999987777777775 3456899999999855
No 297
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=29.42 E-value=1.2e+02 Score=17.63 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=38.2
Q ss_pred eccCccCCcHHHHH-HHHHHHHHHhCCccEEEEEEcC---CChhhHHHHHhCCCEEeee
Q 042035 83 VKENYRGQGHGEAL-LEAAIKKCRTRTVLRITLHVDP---FRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 83 v~~~~r~~Gig~~l-~~~~~~~~~~~g~~~i~~~~~~---~n~~~~~~y~~~Gf~~~~~ 137 (158)
..-.-++.-++..+ .+.+.+.+.+.|+..+.+.+.. ..+.+++.+.+.|+.+...
T Consensus 34 fkg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I 92 (108)
T TIGR03632 34 FKGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSI 92 (108)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEE
Confidence 33444555666554 4456777888999999888753 4566788888889987653
No 298
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=29.13 E-value=1.4e+02 Score=20.38 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=30.0
Q ss_pred CcHHHHHHHHHHHHH-HhCCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 90 QGHGEALLEAAIKKC-RTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 90 ~Gig~~l~~~~~~~~-~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
-|+|+-.+...+..+ ...|.+.+.+++++.|..... |..++-+.
T Consensus 12 GGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~-~~~l~~~~ 56 (241)
T PRK13886 12 GGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEG-YKALNVRR 56 (241)
T ss_pred CCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhh-HHhcCCcc
Confidence 389998877765554 556888888889988865443 44555443
No 299
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=29.01 E-value=1.1e+02 Score=16.90 Aligned_cols=25 Identities=4% Similarity=0.072 Sum_probs=14.1
Q ss_pred HHHhcCCceE-EEEEECCeEEEEEEE
Q 042035 44 EELKKKNSGL-LYIQIHGQVVGYVMY 68 (158)
Q Consensus 44 ~~~~~~~~~~-~~~~~~~~~vG~~~~ 68 (158)
+.+...+... .++..+|+++|++..
T Consensus 77 ~~~~~~~~~~~~Vv~~~~~~~G~it~ 102 (108)
T cd04596 77 HMMIWEGIEMLPVVDDNKKLLGIISR 102 (108)
T ss_pred HHHHHcCCCeeeEEcCCCCEEEEEEH
Confidence 3333333334 444447899998864
No 300
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=28.91 E-value=2e+02 Score=20.90 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=18.7
Q ss_pred EEEEEcCCChhhHHHHHhCCCEEe
Q 042035 112 ITLHVDPFRTPAVNLYKKFGFQVD 135 (158)
Q Consensus 112 i~~~~~~~n~~~~~~y~~~Gf~~~ 135 (158)
+...+...|..+.+||.++|...+
T Consensus 118 ~S~q~~v~N~~~~~f~~~~G~~rv 141 (347)
T COG0826 118 VSTQANVTNAETAKFWKELGAKRV 141 (347)
T ss_pred EeeeEecCCHHHHHHHHHcCCEEE
Confidence 344466789999999999997654
No 301
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=28.89 E-value=1.1e+02 Score=16.92 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=18.2
Q ss_pred HHHHHHhcCCceEEEEEECCeEEEEEEEe
Q 042035 41 SFDEELKKKNSGLLYIQIHGQVVGYVMYA 69 (158)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 69 (158)
.....+...+...+.+.++++++|.+...
T Consensus 78 ~~~~~~~~~~~~~~~Vv~~~~~~G~it~~ 106 (111)
T cd04589 78 NALLLMTRHRIHRVVVREGGEVVGVLEQT 106 (111)
T ss_pred HHHHHHHHhCccEEEEeeCCEEEEEEEhH
Confidence 34444455555555556678999998653
No 302
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=28.82 E-value=1.4e+02 Score=18.17 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=38.4
Q ss_pred EEeccCccCCcHHHHH-HHHHHHHHHhCCccEEEEEEc---CCChhhHHHHHhCCCEEeeee
Q 042035 81 LAVKENYRGQGHGEAL-LEAAIKKCRTRTVLRITLHVD---PFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 81 ~~v~~~~r~~Gig~~l-~~~~~~~~~~~g~~~i~~~~~---~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
+.+.-+-.+.=++..+ .+.+.+.+++.|+..+.+.+. +.-+++++-+...|+++....
T Consensus 50 ~gfk~~rk~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~ 111 (129)
T COG0100 50 MGFKGSRKSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIE 111 (129)
T ss_pred ceEcCCCCCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEE
Confidence 4444433333444444 334555567789998888875 456788999999999987644
No 303
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=28.80 E-value=2.2e+02 Score=20.45 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=29.1
Q ss_pred EEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCC
Q 042035 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFR 120 (158)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n 120 (158)
.....++|.++ +.+...+.+.+.+.|++.+.++++..-
T Consensus 122 ~rwfQLYvykd-------r~It~~Lv~raEk~GfkAlvlTvDtP~ 159 (363)
T KOG0538|consen 122 IRWFQLYVYKD-------RDITEQLVKRAEKAGFKALVLTVDTPR 159 (363)
T ss_pred cEEEEEEecCc-------hHHHHHHHHHHHHcCceEEEEEecccc
Confidence 44556888887 456777777888889999999988753
No 304
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=28.75 E-value=1.7e+02 Score=18.92 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhh----HHHHHhCCCEEee
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPA----VNLYKKFGFQVDA 136 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~----~~~y~~~Gf~~~~ 136 (158)
+..+...+++.+.+.+.+.+. .+.-.++.. ++.+++.||++.=
T Consensus 78 a~~~~~~~~~~a~~~~~nii~-E~tl~~~~~~~~~~~~~k~~GY~v~l 124 (199)
T PF06414_consen 78 ASRLAEKLIEYAIENRYNIIF-EGTLSNPSKLRKLIREAKAAGYKVEL 124 (199)
T ss_dssp HHHHHHHHHHHHHHCT--EEE-E--TTSSHHHHHHHHHHHCTT-EEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEE-ecCCCChhHHHHHHHHHHcCCceEEE
Confidence 455777778888887775444 544444332 3567889998653
No 305
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=28.50 E-value=54 Score=14.90 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=11.1
Q ss_pred ChhhHHHHHhCCCEE
Q 042035 120 RTPAVNLYKKFGFQV 134 (158)
Q Consensus 120 n~~~~~~y~~~Gf~~ 134 (158)
...++++|++.|.-.
T Consensus 12 s~~tlR~ye~~Gll~ 26 (38)
T PF00376_consen 12 SPRTLRYYEREGLLP 26 (38)
T ss_dssp -HHHHHHHHHTTSS-
T ss_pred CHHHHHHHHHCCCCC
Confidence 356899999999763
No 306
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.47 E-value=1.8e+02 Score=20.62 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=26.9
Q ss_pred cCCcHHHHHHHHHHHHHHhCCccEEEEEEcC-CChhhHHHHHhCC
Q 042035 88 RGQGHGEALLEAAIKKCRTRTVLRITLHVDP-FRTPAVNLYKKFG 131 (158)
Q Consensus 88 r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~-~n~~~~~~y~~~G 131 (158)
-|.|+|+++..+.. ++|..-+.+++.. .+....+..++.|
T Consensus 46 gg~GlGr~ialefa----~rg~~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 46 GGSGLGRLIALEFA----KRGAKLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred CCchHHHHHHHHHH----HhCCeEEEEeccccchHHHHHHHHhcC
Confidence 46799998876543 3466555666554 5667778888877
No 307
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=28.42 E-value=1.3e+02 Score=22.10 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCE
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~ 133 (158)
.+...+++.|.+.|++.+.++++..-.....--.+.||.
T Consensus 135 ~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~ 173 (381)
T PRK11197 135 GFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMS 173 (381)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCC
Confidence 466677778888899999999986533333333455664
No 308
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.35 E-value=88 Score=21.33 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=28.5
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS 64 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAARLGVKFLTLYTFS 64 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4456777889999999999999999999888654
No 309
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=28.30 E-value=1.9e+02 Score=20.96 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=4.2
Q ss_pred HHHhCCCEEe
Q 042035 126 LYKKFGFQVD 135 (158)
Q Consensus 126 ~y~~~Gf~~~ 135 (158)
..+.+|-+..
T Consensus 303 IL~dLGi~~i 312 (339)
T PRK09314 303 ILKYLGIKDI 312 (339)
T ss_pred HHHHCCCCEE
Confidence 3444444433
No 310
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.29 E-value=1.4e+02 Score=17.90 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHhCCccE---EEEEEc
Q 042035 91 GHGEALLEAAIKKCRTRTVLR---ITLHVD 117 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~---i~~~~~ 117 (158)
+|...+++.+.+.|++.|..+ |.+.+.
T Consensus 5 si~~~il~~v~~~a~~~~~~rV~~V~l~IG 34 (124)
T PRK00762 5 SMACEIVEAVIDTAEKNNATEVTEVTLEIG 34 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEC
Confidence 678889999999888776544 444444
No 311
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=28.27 E-value=1e+02 Score=18.11 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHhCCcc---EEEEEEc
Q 042035 91 GHGEALLEAAIKKCRTRTVL---RITLHVD 117 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~---~i~~~~~ 117 (158)
+|+..+++.+.+.|++.+.. +|.+.+.
T Consensus 5 si~~~iv~~v~~~a~~~~~~kV~~V~l~iG 34 (113)
T PF01155_consen 5 SIAQSIVEIVEEEAEENGAKKVTKVRLEIG 34 (113)
T ss_dssp HHHHHHHHHHHHHHHCTT-SEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEEEC
Confidence 57889999999999876654 4455544
No 312
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=28.24 E-value=1.2e+02 Score=17.09 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=17.5
Q ss_pred EEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 111 RITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 111 ~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
++.+.+. +-.++.+||+. +||+....
T Consensus 3 hv~i~v~-d~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 3 HTMLRVK-DLEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred eEEEEec-CcHHHHHHHHhccCCeEEEE
Confidence 4445543 34678999975 79998764
No 313
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=27.86 E-value=66 Score=13.98 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=10.1
Q ss_pred EEEEEECCeEEEEEEE
Q 042035 53 LLYIQIHGQVVGYVMY 68 (158)
Q Consensus 53 ~~~~~~~~~~vG~~~~ 68 (158)
++++..+++++|++..
T Consensus 26 ~~v~~~~~~~~g~i~~ 41 (49)
T smart00116 26 LPVVDEEGRLVGIVTR 41 (49)
T ss_pred ccEECCCCeEEEEEEH
Confidence 3444445788888764
No 314
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=27.82 E-value=1.5e+02 Score=19.63 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=15.5
Q ss_pred EcCCChhhHHHHHhCCCEEee
Q 042035 116 VDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 116 ~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+...|..+.++|+.+|+..+-
T Consensus 45 ~nv~N~~s~~~~~~~G~~~i~ 65 (233)
T PF01136_consen 45 LNVFNSESARFLKELGASRIT 65 (233)
T ss_pred ccCCCHHHHHHHHHcCCCEEE
Confidence 445788888888888887654
No 315
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=27.69 E-value=81 Score=16.98 Aligned_cols=21 Identities=29% Similarity=0.312 Sum_probs=16.4
Q ss_pred CChhhHHHHHh-CCCEEeeeec
Q 042035 119 FRTPAVNLYKK-FGFQVDALIQ 139 (158)
Q Consensus 119 ~n~~~~~~y~~-~Gf~~~~~~~ 139 (158)
+-..+.+||.+ +||+......
T Consensus 8 d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 8 DLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred CHHHHHHHHHhccCCEEEEeec
Confidence 35678999997 9999877653
No 316
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=27.64 E-value=1.4e+02 Score=17.76 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHhCCcc---EEEEEEcC---CChhhHHHH
Q 042035 91 GHGEALLEAAIKKCRTRTVL---RITLHVDP---FRTPAVNLY 127 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~---~i~~~~~~---~n~~~~~~y 127 (158)
.++..++..+.++|++.|.. .|++.+.. -|+.+.+|-
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~Fa 47 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFA 47 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHH
Confidence 57889999999999988764 44444432 255555553
No 317
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.62 E-value=1.3e+02 Score=17.28 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=10.5
Q ss_pred EEEEEECCeEEEEEEE
Q 042035 53 LLYIQIHGQVVGYVMY 68 (158)
Q Consensus 53 ~~~~~~~~~~vG~~~~ 68 (158)
..++..+++++|.+..
T Consensus 105 l~Vvd~~~~~~Giit~ 120 (126)
T cd04642 105 VWVVDEEGKPIGVITL 120 (126)
T ss_pred EEEECCCCCEEEEEEH
Confidence 3433345899998864
No 318
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=27.58 E-value=1.7e+02 Score=18.75 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=22.8
Q ss_pred HHHHhhhcCCChh-hHHHHHHHHhcCCceEEEEEECCeEEEEEE
Q 042035 25 VKMEKKIFPKHEP-LARSFDEELKKKNSGLLYIQIHGQVVGYVM 67 (158)
Q Consensus 25 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 67 (158)
.+...+.||.-.+ ..-.....+...+...++. ++|++||.+.
T Consensus 133 r~vM~e~fP~Vs~~~~l~vI~~LL~~~~AVlV~-e~G~~vGIIT 175 (187)
T COG3620 133 REVMGEPFPTVSPDESLNVISQLLEEHPAVLVV-ENGKVVGIIT 175 (187)
T ss_pred HHHhcCCCCcCCCCCCHHHHHHHHhhCCeEEEE-eCCceEEEEe
Confidence 3445566664321 1223344444444444444 8999999875
No 319
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.52 E-value=1.3e+02 Score=18.25 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred cCCcHHHHHHHHHHHHHHhCCccEEEEE
Q 042035 88 RGQGHGEALLEAAIKKCRTRTVLRITLH 115 (158)
Q Consensus 88 r~~Gig~~l~~~~~~~~~~~g~~~i~~~ 115 (158)
+..++..-|+..+++.|++.|++.+.-.
T Consensus 37 ~hp~L~~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 37 RHPGLKRDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CCCCCCcCHHHHHHHHHHHCCCEEEEEE
Confidence 3455567999999999999998755433
No 320
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=27.50 E-value=2.1e+02 Score=19.66 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCC------hhhHHHHHhCCCEEeeee
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFR------TPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n------~~~~~~y~~~Gf~~~~~~ 138 (158)
-+...+++|++.|++.|.+....-. ...++..++.||++..+.
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecc
Confidence 4567788899999999998744322 235677789999988765
No 321
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=27.49 E-value=1.6e+02 Score=19.67 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=27.6
Q ss_pred cHHHHHH-HHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 91 GHGEALL-EAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 91 Gig~~l~-~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
|-|+..+ ..+.......|...+++.+...-...++..+++||..
T Consensus 34 G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~ 78 (230)
T PRK08533 34 STGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDI 78 (230)
T ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCch
Confidence 7777776 3444434455767777775555555667778888854
No 322
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.45 E-value=1.3e+02 Score=17.17 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=14.9
Q ss_pred HHHhcCCceEEEEE-ECCeEEEEEEEe
Q 042035 44 EELKKKNSGLLYIQ-IHGQVVGYVMYA 69 (158)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~~~vG~~~~~ 69 (158)
..+.+.+...+.+. .+++++|.+...
T Consensus 92 ~~m~~~~~~~lpVvd~~~~~vGiit~~ 118 (123)
T cd04627 92 HLMHNEGISSVAVVDNQGNLIGNISVT 118 (123)
T ss_pred HHHHHcCCceEEEECCCCcEEEEEeHH
Confidence 33334444444444 468899998753
No 323
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=27.39 E-value=1.7e+02 Score=18.58 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=21.2
Q ss_pred hCCccEEEEEEcCCChhh-HHHHHhCCCEEeee
Q 042035 106 TRTVLRITLHVDPFRTPA-VNLYKKFGFQVDAL 137 (158)
Q Consensus 106 ~~g~~~i~~~~~~~n~~~-~~~y~~~Gf~~~~~ 137 (158)
..++-.....+......+ .+++++-||+....
T Consensus 43 ~~~~~lflWvTn~~~~~~~~~l~~~WGf~~~~~ 75 (176)
T PF05063_consen 43 APGALLFLWVTNSQLPEAKLELFPAWGFEYVTE 75 (176)
T ss_pred CCCcEEEEEeccchhhHHHHHHHHhCCCEEEEE
Confidence 334434444455555667 89999999998775
No 324
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=27.22 E-value=1.2e+02 Score=16.68 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhC
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKF 130 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~ 130 (158)
++...+.+....|++++.+....+...+..+.+++
T Consensus 6 ~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 6 YLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 45555666677899999888776666677777664
No 325
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=27.12 E-value=91 Score=19.00 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
|+-|+.++++.+.+.+++.|.+.+.. +.-...+.+.+.+....
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~ 65 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVVD 65 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE-
T ss_pred CccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEEe
Confidence 34578888888888788888888755 33334456677776543
No 326
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=27.03 E-value=1.2e+02 Score=16.76 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=14.6
Q ss_pred HHHHhcCCce-EEEEEECCeEEEEEEE
Q 042035 43 DEELKKKNSG-LLYIQIHGQVVGYVMY 68 (158)
Q Consensus 43 ~~~~~~~~~~-~~~~~~~~~~vG~~~~ 68 (158)
...+...+.. ..++..+++++|++..
T Consensus 81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~ 107 (113)
T cd04587 81 LHLMVQGKFRHLPVVDKSGQVVGLLDV 107 (113)
T ss_pred HHHHHHcCCCcccEECCCCCEEEEEEH
Confidence 3334433433 3444446899999865
No 327
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.98 E-value=1e+02 Score=21.21 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.1
Q ss_pred cCCcHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 88 RGQGHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 88 r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
.|.--|..-+..++++|.+.|++.+.+.+.
T Consensus 51 ~GH~~G~~~l~~~~~~~~~~gIk~lTvYaF 80 (256)
T PRK14828 51 QGHRAGAAKIGEFLGWCDETDVNVVTLYLL 80 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 667788889999999999999999988755
No 328
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.88 E-value=73 Score=18.21 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.8
Q ss_pred CChhhHHHHH-hCCCEEeeee
Q 042035 119 FRTPAVNLYK-KFGFQVDALI 138 (158)
Q Consensus 119 ~n~~~~~~y~-~~Gf~~~~~~ 138 (158)
+-.+++.||+ .+||+.....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEEE
Confidence 4467999997 8999987644
No 329
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=26.70 E-value=1.2e+02 Score=21.39 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 94 EALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 94 ~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
..+++++++.|++.|...-.+.-..+++..+.++-.+|.+.....+.
T Consensus 234 l~li~~vi~~a~~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p~ 280 (293)
T PF02896_consen 234 LRLIKQVIDAAHKAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSPD 280 (293)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-GG
T ss_pred HHHHHHHHHHHhhcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 45788888888888865444444567899999999999998775543
No 330
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.78 E-value=1.1e+02 Score=17.46 Aligned_cols=25 Identities=24% Similarity=0.281 Sum_probs=16.7
Q ss_pred EEEEEEcCCChhhHHHHHh-CCCEEee
Q 042035 111 RITLHVDPFRTPAVNLYKK-FGFQVDA 136 (158)
Q Consensus 111 ~i~~~~~~~n~~~~~~y~~-~Gf~~~~ 136 (158)
.+.+.|. +-.++++||+. +||+...
T Consensus 5 ~~~l~v~-D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 5 NPLLVVK-DIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEC-CHHHHHHHHHHhcCCEEee
Confidence 3444443 34778999975 9998753
No 331
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.60 E-value=1.3e+02 Score=17.84 Aligned_cols=27 Identities=4% Similarity=0.160 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHHHhCCcc---EEEEEEc
Q 042035 91 GHGEALLEAAIKKCRTRTVL---RITLHVD 117 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~---~i~~~~~ 117 (158)
+|+..+++.+.+.|++.|.. +|.+.+.
T Consensus 5 si~~~il~~v~~~a~~~~~~~V~~V~l~IG 34 (117)
T PRK00564 5 SVVSSLIALCEEHAKKNQAHKIEKVVVGIG 34 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEc
Confidence 57788888888888776544 4455443
No 332
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=25.42 E-value=1.3e+02 Score=17.21 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
|-..+..+.+.++.+|..-+... .++...+.+++.|+..
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l~~---~~~~v~~~l~~~~~~~ 103 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVLVG---LNPDVRRILERSGLID 103 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEES---HHHHHHHHHHHTTGHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHcCCCh
Confidence 33455666777777776544443 4567788899999863
No 333
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.39 E-value=1.4e+02 Score=17.03 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=19.8
Q ss_pred hHHHHHHHHhcCCceEEEEEECCeEEEEE
Q 042035 38 LARSFDEELKKKNSGLLYIQIHGQVVGYV 66 (158)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~ 66 (158)
....+.+.+.++....-++..++++||-.
T Consensus 60 ~~~~~aekI~~dey~YPlivvedeiVaeG 88 (106)
T COG4837 60 HDLQFAEKIEQDEYFYPLIVVEDEIVAEG 88 (106)
T ss_pred HHHHHHHHHhcccccceEEEEcceEeecC
Confidence 34456666666677776777789988743
No 334
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=25.33 E-value=1.3e+02 Score=16.63 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=15.1
Q ss_pred HHHHHhcCC-ceEEEEEECCeEEEEEEE
Q 042035 42 FDEELKKKN-SGLLYIQIHGQVVGYVMY 68 (158)
Q Consensus 42 ~~~~~~~~~-~~~~~~~~~~~~vG~~~~ 68 (158)
....+.... ....++.++|+++|.+..
T Consensus 80 ~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~ 107 (113)
T cd04615 80 ARWLMSNNNISRLPVLDDKGKVGGIVTE 107 (113)
T ss_pred HHHHHHHcCCCeeeEECCCCeEEEEEEH
Confidence 333343333 344444456799998864
No 335
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=25.27 E-value=1.3e+02 Score=18.72 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=19.9
Q ss_pred CccEEEEEEcCCChhhHHHHH-hCCCEEeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYK-KFGFQVDAL 137 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~-~~Gf~~~~~ 137 (158)
++..+.+.|.. -..++.||. .+||+....
T Consensus 6 ~i~Hi~l~V~D-le~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 6 RLDHVNLLASD-VDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred eeeeEEEEcCC-HHHHHHHHHHccCCEEEEE
Confidence 34566666544 467899996 699987654
No 336
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=25.21 E-value=1.4e+02 Score=16.81 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=15.2
Q ss_pred CChhhHHHHH-hCCCEEeeee
Q 042035 119 FRTPAVNLYK-KFGFQVDALI 138 (158)
Q Consensus 119 ~n~~~~~~y~-~~Gf~~~~~~ 138 (158)
+-..+.+||. .+||+.....
T Consensus 11 d~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEEE
Confidence 4467899997 5999987644
No 337
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=25.14 E-value=2.6e+02 Score=20.31 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 91 GHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
|+| -|=..++++|+..|.+.+-++ .++.-..+-+++|-...-
T Consensus 174 G~G-GlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i 215 (339)
T COG1064 174 GAG-GLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVI 215 (339)
T ss_pred CCc-HHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEE
Confidence 555 566678888888885544444 455677889999987654
No 338
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=25.10 E-value=1.4e+02 Score=16.68 Aligned_cols=39 Identities=8% Similarity=-0.005 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
|-.++..+.+.+++.|..-.... .++...+.++..|+..
T Consensus 56 gl~~L~~l~~~~~~~g~~l~l~~---~~~~v~~~l~~~gl~~ 94 (100)
T cd06844 56 GTGVLLERSRLAEAVGGQFVLTG---ISPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEC---CCHHHHHHHHHhCchh
Confidence 33455566666777775443333 5677888999998864
No 339
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.10 E-value=1.3e+02 Score=16.36 Aligned_cols=27 Identities=15% Similarity=0.157 Sum_probs=16.5
Q ss_pred HHHHHhcCCceEEEEEECCeEEEEEEE
Q 042035 42 FDEELKKKNSGLLYIQIHGQVVGYVMY 68 (158)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~vG~~~~ 68 (158)
..+.+...+...+.+.++++++|.+..
T Consensus 73 ~~~~~~~~~~~~~~Vv~~~~~~G~it~ 99 (105)
T cd04599 73 AKRLMEEKKIERLPVLRERKLVGIITK 99 (105)
T ss_pred HHHHHHHcCCCEeeEEECCEEEEEEEH
Confidence 334444444545555556999998865
No 340
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=25.08 E-value=65 Score=18.13 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=11.7
Q ss_pred EEeccCccCCcHHHHHHHHHHHH
Q 042035 81 LAVKENYRGQGHGEALLEAAIKK 103 (158)
Q Consensus 81 ~~v~~~~r~~Gig~~l~~~~~~~ 103 (158)
+++||+--|.-++..+++.+...
T Consensus 65 iatD~D~EGe~Ia~~i~~~~~~~ 87 (100)
T PF01751_consen 65 IATDPDREGELIAWEIIELLGKN 87 (100)
T ss_dssp EEC-SSHHHHHHHHHHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHHHHHhHh
Confidence 55566655555555555544443
No 341
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=24.97 E-value=1.2e+02 Score=17.97 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=19.9
Q ss_pred CccEEEEEEcCCChhhHHHHH-hCCCEEeee
Q 042035 108 TVLRITLHVDPFRTPAVNLYK-KFGFQVDAL 137 (158)
Q Consensus 108 g~~~i~~~~~~~n~~~~~~y~-~~Gf~~~~~ 137 (158)
++..+.+.|.. =.++.+||+ .+||+....
T Consensus 4 ~i~hi~L~v~D-l~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 4 GINHICFSVSN-LEKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred cEEEEEEEecC-HHHHHHHHHhccCCEEEee
Confidence 45566666543 367899995 599988743
No 342
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=24.92 E-value=74 Score=19.18 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCE
Q 042035 96 LLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133 (158)
Q Consensus 96 l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~ 133 (158)
-.-++++=|++.|++++.+... .-..+|+++++.
T Consensus 8 SALqIl~GAk~EGFrT~~ic~~----~r~~~Y~~f~~i 41 (124)
T PF06849_consen 8 SALQILDGAKDEGFRTIAICQK----GREKFYRRFPFI 41 (124)
T ss_dssp THHHHHHHHHHTT--EEEEEET----TCHHHHHTTTT-
T ss_pred HHHHHhhhHHHcCCcEEEEECC----CCcchhhhcCcC
Confidence 3446777889999998877642 235899999954
No 343
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.89 E-value=2.2e+02 Score=19.09 Aligned_cols=88 Identities=10% Similarity=0.055 Sum_probs=54.1
Q ss_pred hhHHHHHHHHhcCCceEEEEEECCeEEEEEEEeecCCCeEEEEE-EEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEE
Q 042035 37 PLARSFDEELKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITK-LAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLH 115 (158)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~-~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~ 115 (158)
+..+.+.+.......+.+=++.++++||-+..... ..+.++. ++ +|..+-.+..+-++.+.....|..-+-..
T Consensus 107 ~~~~aY~~Lh~~G~AHSvE~W~gdeLvGGlYGval--G~~F~GESMF----sr~~nASKialv~lv~~L~~~g~~LiD~Q 180 (221)
T COG2360 107 EIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVAL--GRAFFGESMF----SRATNASKIALVHLVEHLRRHGFVLIDCQ 180 (221)
T ss_pred HHHHHHHHHHHhccceeEEEeeCCeeehhhhhhhh--cceeechhhh----hcCCCchHHHHHHHHHHHHhcCceEEeee
Confidence 34455555556667777888889999986643211 1122221 22 45556677778888888888887655544
Q ss_pred EcCCChhhHHHHHhCCCEEee
Q 042035 116 VDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 116 ~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
+ .| .-.+++|-..+.
T Consensus 181 ~--~n----~HL~~~GA~~ip 195 (221)
T COG2360 181 V--LN----EHLASLGAYEIP 195 (221)
T ss_pred c--CC----HHHHhcCCeecC
Confidence 4 44 346677776665
No 344
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]
Probab=24.77 E-value=2.3e+02 Score=19.28 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=36.4
Q ss_pred ccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeee
Q 042035 87 YRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 87 ~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 137 (158)
.|-.||++ +...+.+.|+..|+..-++.+... .+..++.+|.|.-+-|-
T Consensus 111 ~R~SGIAT-a~~~~~~aAr~~g~~g~IagTRKT-tPGLRlveKy~~LvGG~ 159 (300)
T KOG3008|consen 111 ARCSGIAT-AAAAAVEAARGAGWTGHIAGTRKT-TPGLRLVEKYGLLVGGA 159 (300)
T ss_pred HHhccHHH-HHHHHHHHHhcCCCcceecccccC-Ccchhhhhhhceeeccc
Confidence 46678887 445677778888888888887765 56778899998877653
No 345
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=24.60 E-value=1.8e+02 Score=21.31 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=32.7
Q ss_pred EEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCE
Q 042035 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133 (158)
Q Consensus 78 i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~ 133 (158)
...+++.++ +.+...+++.|.+.|++.+.++++..-..-+.-=.++||.
T Consensus 125 wfQlY~~~D-------r~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~ 173 (367)
T PLN02493 125 FFQLYVYKN-------RNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFT 173 (367)
T ss_pred EEEEeecCC-------HHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCC
Confidence 345666555 3467777888888899999999987654433333355664
No 346
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=24.59 E-value=1.1e+02 Score=19.97 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 94 EALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 94 ~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
+-++.++++.+.+.|++.+.+.+..
T Consensus 31 ~piI~~~l~~l~~~Gi~~I~iv~~~ 55 (217)
T cd04197 31 VPLIDYTLEFLALNGVEEVFVFCCS 55 (217)
T ss_pred EehHHHHHHHHHHCCCCeEEEEeCC
Confidence 4577888888777788888777764
No 347
>PF11513 TA0956: Thermoplasma acidophilum protein TA0956; InterPro: IPR021595 TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif. ; PDB: 2K24_A 2JMK_A.
Probab=24.59 E-value=1.5e+02 Score=16.86 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=26.7
Q ss_pred CCeEEEEEEEeecCCCeEEEEEEEeccCccCCcHHHHHHHHHHHHHHhCCcc
Q 042035 59 HGQVVGYVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVL 110 (158)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~ 110 (158)
+++.|||+.++ .+.....+..--++... +.-++++.+..++.|++
T Consensus 61 EDKTvGFvviN-~dKK~mSvsFsdideNm------K~~i~ei~kkykd~Gyk 105 (110)
T PF11513_consen 61 EDKTVGFVVIN-KDKKMMSVSFSDIDENM------KNSIEEIVKKYKDSGYK 105 (110)
T ss_dssp TSEEEEEEEEE-TTTTEEEEEE-S--CCH------HHHHHHHHHHHHCCS-E
T ss_pred CCceeEEEEEe-cCCeEEEEEecchhHHH------HHHHHHHHHHhhcCCce
Confidence 78999999998 44455544433344443 55666666666666653
No 348
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.57 E-value=1.3e+02 Score=20.62 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=26.2
Q ss_pred ccCCcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 87 YRGQGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 87 ~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
..|.--|..-+..++++|.+.|++.+.+.+..
T Consensus 45 ~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS 76 (251)
T PRK14830 45 IAGHKAGMDTVKKITKAASELGVKVLTLYAFS 76 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 34666788889999999999999988888553
No 349
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=24.42 E-value=1.2e+02 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 91 GHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
-.|+.++..+.+.+.+.|+..++.+|+
T Consensus 136 ~~GR~~l~~~~~~ie~~g~~VIYGDTD 162 (323)
T cd00145 136 SFGREIIQDTIALVEEHGARVIYGDTD 162 (323)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 578899999999998888877776655
No 350
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=24.32 E-value=1.4e+02 Score=16.45 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=15.6
Q ss_pred HHHHHhcCCceEEEEEECCeEEEEEEE
Q 042035 42 FDEELKKKNSGLLYIQIHGQVVGYVMY 68 (158)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~vG~~~~ 68 (158)
..+.+...+...+.+.++++++|.+..
T Consensus 81 ~l~~~~~~~~~~~~Vv~~~~~~Gvit~ 107 (113)
T cd04623 81 AMALMTERRFRHLPVVDGGKLVGIVSI 107 (113)
T ss_pred HHHHHHHcCCCEeEEEeCCEEEEEEEH
Confidence 333344444444455556999998864
No 351
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.29 E-value=1.3e+02 Score=20.59 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhCCccEEEEE
Q 042035 93 GEALLEAAIKKCRTRTVLRITLH 115 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~ 115 (158)
|-.+|+.++..|++.|++.|.+.
T Consensus 94 aleiM~KaI~LA~dLGIRtIQLA 116 (287)
T COG3623 94 ALEIMEKAIQLAQDLGIRTIQLA 116 (287)
T ss_pred HHHHHHHHHHHHHHhCceeEeec
Confidence 45789999999999999999875
No 352
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=24.23 E-value=2.8e+02 Score=20.05 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=27.8
Q ss_pred ceEEEEEE-CCeEEEEEEEeecCCCeEEEEEEEeccCccCC
Q 042035 51 SGLLYIQI-HGQVVGYVMYAWPTSLSASITKLAVKENYRGQ 90 (158)
Q Consensus 51 ~~~~~~~~-~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~ 90 (158)
...+++.. .|++|+++.+. ...-+|..+.|.|..|.-
T Consensus 282 CGv~vidl~tG~vv~~l~fe---g~v~EifdV~vLPg~r~P 319 (335)
T TIGR03032 282 CGVAVIDLNSGDVVHWLRFE---GVIEEIYDVAVLPGVRRP 319 (335)
T ss_pred ccEEEEECCCCCEEEEEEeC---CceeEEEEEEEecCCCCc
Confidence 44555543 89999999874 446788899999998864
No 353
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=24.03 E-value=1.4e+02 Score=16.48 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=16.1
Q ss_pred HHHHHhcCCceEEEEEECCeEEEEEEE
Q 042035 42 FDEELKKKNSGLLYIQIHGQVVGYVMY 68 (158)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~vG~~~~ 68 (158)
....+...+...+.+.++++++|.+..
T Consensus 80 a~~~m~~~~~~~l~Vv~~~~~~Gvvt~ 106 (112)
T cd04625 80 VRRLMVERHLRYLPVLDGGTLLGVISF 106 (112)
T ss_pred HHHHHHHcCCCeeeEEECCEEEEEEEH
Confidence 333444444444555568999998864
No 354
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=23.86 E-value=1e+02 Score=15.05 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=11.8
Q ss_pred hhHHHHHhCCCEEeee
Q 042035 122 PAVNLYKKFGFQVDAL 137 (158)
Q Consensus 122 ~~~~~y~~~Gf~~~~~ 137 (158)
..+++.+++||.....
T Consensus 3 el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 3 ELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHCCCEEecC
Confidence 3578999999998853
No 355
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.64 E-value=1.4e+02 Score=20.44 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHh-CCccEEEEEEcCCChhhHHHHHhCCCEE
Q 042035 91 GHGEALLEAAIKKCRT-RTVLRITLHVDPFRTPAVNLYKKFGFQV 134 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~y~~~Gf~~ 134 (158)
|+|+.-+.+.+.++.. .|.+.+-++.++.| +.++.-.+.+..
T Consensus 12 GvG~TTltAnLA~aL~~~G~~VlaID~dpqN--~Lrlhfg~~~~~ 54 (243)
T PF06564_consen 12 GVGKTTLTANLAWALARLGESVLAIDLDPQN--LLRLHFGLPLDD 54 (243)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH--HHHHhcCCCCcc
Confidence 9999999999998854 58888888887766 566665665543
No 356
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.22 E-value=1.5e+02 Score=16.82 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=13.1
Q ss_pred hhhHHHHHh-CCCEEeee
Q 042035 121 TPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 121 ~~~~~~y~~-~Gf~~~~~ 137 (158)
..+..||.+ +||+....
T Consensus 13 ~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 13 EASIAFYSKLFGVEPTKV 30 (120)
T ss_pred HHHHHHHHHHhCCeEecc
Confidence 678999965 79987654
No 357
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=23.17 E-value=1.5e+02 Score=17.48 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=18.1
Q ss_pred cEEEEEEcCCChhhHHHHHh-CCCEEeee
Q 042035 110 LRITLHVDPFRTPAVNLYKK-FGFQVDAL 137 (158)
Q Consensus 110 ~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~ 137 (158)
..+.+.|. +-.+++.||++ +||+....
T Consensus 2 ~HV~l~V~-Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 2 NHMTFSVS-NLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred ceEEEEEC-CHHHHHHHHHHhhCCEEecc
Confidence 34555553 44678899986 89987643
No 358
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=22.97 E-value=2.3e+02 Score=20.82 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCE
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQ 133 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~ 133 (158)
.+...+++.|.+.|++.+.++++..-..-+.--.+.||.
T Consensus 146 ~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~ 184 (367)
T TIGR02708 146 GINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFV 184 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCC
Confidence 456677788888899999999986543333333445553
No 359
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=22.83 E-value=2.3e+02 Score=18.47 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=7.2
Q ss_pred EEeccCccCC
Q 042035 81 LAVKENYRGQ 90 (158)
Q Consensus 81 ~~v~~~~r~~ 90 (158)
-...|+|||.
T Consensus 109 pslLP~yrG~ 118 (190)
T TIGR00639 109 PSLLPAFPGL 118 (190)
T ss_pred CCcccCCCCc
Confidence 4567889983
No 360
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=22.80 E-value=2.1e+02 Score=21.19 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCC
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGF 132 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf 132 (158)
.+...+++.|.+.|++.+.++|+..-..-+.--.+.||
T Consensus 151 ~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~ 188 (383)
T cd03332 151 DLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGY 188 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCC
Confidence 35566777788889999999988654444444455666
No 361
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=22.77 E-value=2.7e+02 Score=19.36 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCC
Q 042035 91 GHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFG 131 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~G 131 (158)
.+|-++...+++.....|+..+.+.+...-.....+.+.+|
T Consensus 247 ~~gi~~a~e~~~~l~~~gv~GvH~~t~n~~~~~~~il~~lg 287 (287)
T PF02219_consen 247 EIGIEIAVELIRELLAEGVPGVHLYTMNREELVPEILENLG 287 (287)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEETTTSHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 45556666666666677888899988888788888888887
No 362
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=22.74 E-value=4.9e+02 Score=22.30 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=46.3
Q ss_pred CeEEEEEEEeccCccCCc--HHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 74 LSASITKLAVKENYRGQG--HGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 74 ~~~~i~~~~v~~~~r~~G--ig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
....+..+.-|+.+-..| +....+..-+..+++.|++.|++...+..+.-..+..++|+-+..+.
T Consensus 332 kpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~ 398 (1021)
T PRK10340 332 RYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAET 398 (1021)
T ss_pred EEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECC
Confidence 345566666666655455 44677778888899999999998755555555666779999887653
No 363
>PLN02535 glycolate oxidase
Probab=22.56 E-value=2.1e+02 Score=20.93 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=25.2
Q ss_pred EEEEEeccCccCCcHHHHHHHHHHHHHHhCCccEEEEEEcCC
Q 042035 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLRITLHVDPF 119 (158)
Q Consensus 78 i~~~~v~~~~r~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~ 119 (158)
...+++.++ ..+...+++.|.+.|++.+.++++..
T Consensus 127 wfQlY~~~d-------r~~~~~ll~RA~~aG~~alvlTvD~p 161 (364)
T PLN02535 127 FLQLYVYKR-------RDIAAQLVQRAEKNGYKAIVLTADVP 161 (364)
T ss_pred EEEEeccCC-------HHHHHHHHHHHHHcCCCEEEEeecCC
Confidence 334666444 34666777788888999999998874
No 364
>PRK04017 hypothetical protein; Provisional
Probab=22.55 E-value=97 Score=18.93 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=17.8
Q ss_pred EEEeccCccCCcHHHHHHHHHHH
Q 042035 80 KLAVKENYRGQGHGEALLEAAIK 102 (158)
Q Consensus 80 ~~~v~~~~r~~Gig~~l~~~~~~ 102 (158)
-+.+||++.|.-+.+.+.+.+..
T Consensus 69 IILTD~D~~GekIr~~l~~~l~~ 91 (132)
T PRK04017 69 IILTDFDRKGEELAKKLSEYLQG 91 (132)
T ss_pred EEEECCCcchHHHHHHHHHHHHh
Confidence 37789999998888877766544
No 365
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=22.46 E-value=1.6e+02 Score=16.62 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=15.2
Q ss_pred HHHHhcCCceEEEEE-ECCeEEEEEEE
Q 042035 43 DEELKKKNSGLLYIQ-IHGQVVGYVMY 68 (158)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~~~~vG~~~~ 68 (158)
.+.+...+...+.+. .+|+++|++..
T Consensus 92 ~~~~~~~~~~~~~Vv~~~g~~~Gvit~ 118 (124)
T cd04600 92 VPLLADGGHHHVPVVDEDRRLVGIVTQ 118 (124)
T ss_pred HHHHHhcCCCceeEEcCCCCEEEEEEh
Confidence 334444444444444 48899998865
No 366
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=22.31 E-value=1.9e+02 Score=17.25 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=12.8
Q ss_pred ceEEEEEECCeEEEEEEEe
Q 042035 51 SGLLYIQIHGQVVGYVMYA 69 (158)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~ 69 (158)
..++++..+|+++|.+...
T Consensus 25 ~~~~VvD~~g~l~Givt~~ 43 (133)
T cd04592 25 SCVLVVDSDDFLEGILTLG 43 (133)
T ss_pred CEEEEECCCCeEEEEEEHH
Confidence 3444444578999999864
No 367
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.24 E-value=60 Score=20.22 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=12.5
Q ss_pred hhHHHHHhCCCEEeee
Q 042035 122 PAVNLYKKFGFQVDAL 137 (158)
Q Consensus 122 ~~~~~y~~~Gf~~~~~ 137 (158)
....||++.||+-...
T Consensus 71 ~~~~FYEnyGf~A~el 86 (174)
T COG4904 71 TVEAFYENYGFSAGEL 86 (174)
T ss_pred HHHHHHHHcCCCcCCC
Confidence 4568999999987643
No 368
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.18 E-value=1.6e+02 Score=16.47 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=23.3
Q ss_pred cEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 110 LRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 110 ~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
+.|.++++..-..++.++++.|.+.+...
T Consensus 54 D~VllT~D~DL~e~v~iar~~g~~~v~L~ 82 (86)
T cd06409 54 DIVLITSDSDLVAAVLVARSAGLKKLDLH 82 (86)
T ss_pred CEEEEeccchHHHHHHHHHHcCCCEEEEE
Confidence 56788888888889999999998876543
No 369
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=22.17 E-value=81 Score=22.84 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=23.1
Q ss_pred CCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 107 RTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 107 ~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
.|++.|.+.+.........++.++||+..+..
T Consensus 21 ~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~H 52 (363)
T COG3185 21 DGFEFVEFAVPDPQEALGALLGQLGFTAVAKH 52 (363)
T ss_pred CceeEEEEecCCHHHHHHHHHHHhCccccccc
Confidence 36777777776655567778888888877644
No 370
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=22.09 E-value=2.4e+02 Score=18.46 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHhcCCc-eEEEEE-E--CCeEEEEEEEe
Q 042035 20 VVDEIVKMEKKIFPKHEPLARSFDEELKKKNS-GLLYIQ-I--HGQVVGYVMYA 69 (158)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~~vG~~~~~ 69 (158)
|...+..+..+.|.........+...+..... ..++-. + ++.+.|++.+-
T Consensus 16 D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svl 69 (194)
T PF13862_consen 16 DFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVL 69 (194)
T ss_pred hHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEE
Confidence 89999999999887643333455555544433 222222 1 34566666553
No 371
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.96 E-value=1.6e+02 Score=16.30 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=14.0
Q ss_pred HHhcCCceEEEEEECCeEEEEEEE
Q 042035 45 ELKKKNSGLLYIQIHGQVVGYVMY 68 (158)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~vG~~~~ 68 (158)
.+.+.+...+.+.++|.++|.+..
T Consensus 85 ~~~~~~~~~~~Vv~~~~~~Gvit~ 108 (114)
T cd04629 85 LMLKAKPKRYPVVDDGKLVGQISR 108 (114)
T ss_pred HHHHhCCCccCEEECCEEEEEEEH
Confidence 333333334445556899998864
No 372
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=21.95 E-value=1.2e+02 Score=16.02 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.3
Q ss_pred hhhHHHHHhCCCEEeeee
Q 042035 121 TPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 121 ~~~~~~y~~~Gf~~~~~~ 138 (158)
...++..++.||......
T Consensus 10 ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 10 KEVIKALEKDGFQLVRQK 27 (66)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 346889999999988654
No 373
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=21.92 E-value=1.6e+02 Score=16.24 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=16.1
Q ss_pred HHHHHHhcCCceEEEEE-ECCeEEEEEEE
Q 042035 41 SFDEELKKKNSGLLYIQ-IHGQVVGYVMY 68 (158)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~~~~~vG~~~~ 68 (158)
...+.+...+...+.+. .+|+++|.+..
T Consensus 77 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~ 105 (111)
T cd04590 77 DLLEEMRKERSHMAIVVDEYGGTAGLVTL 105 (111)
T ss_pred HHHHHHHhcCCcEEEEEECCCCEEEEeEH
Confidence 33444444444444444 45899998864
No 374
>cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proved by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=21.82 E-value=1.5e+02 Score=21.39 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHhCCccEEEEEEc
Q 042035 91 GHGEALLEAAIKKCRTRTVLRITLHVD 117 (158)
Q Consensus 91 Gig~~l~~~~~~~~~~~g~~~i~~~~~ 117 (158)
-.|+.++..+.+++.+.|+..++.+|+
T Consensus 113 ~~GR~~L~~~~~~~e~~g~~VIygDTD 139 (347)
T cd05538 113 RLGRELLKLMIRWLRRRGATPVEVDTD 139 (347)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 578888888888888888877776654
No 375
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=21.71 E-value=1.6e+02 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 90 QGHGEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 90 ~Gig~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
..+|+.++..+.+.+.+.|++.++.+|+.
T Consensus 128 T~~GR~~L~~~~~~~e~~g~~VIygDTDS 156 (352)
T cd05531 128 TAYGRKILLRAKEIAEEMGFRVLHGIVDS 156 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 35788899999999988899888777664
No 376
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=21.64 E-value=1.6e+02 Score=16.15 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=15.4
Q ss_pred HHHHhcCCceEEEEEECCeEEEEEEE
Q 042035 43 DEELKKKNSGLLYIQIHGQVVGYVMY 68 (158)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~vG~~~~ 68 (158)
...+...+...+.+.++|+++|.+..
T Consensus 73 ~~~~~~~~~~~~~Vv~~~~~iGvit~ 98 (104)
T cd04594 73 WEVMMKNKTRWCPVVDDGKFKGIVTL 98 (104)
T ss_pred HHHHHHcCcceEEEEECCEEEEEEEH
Confidence 33343444444444468899998865
No 377
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.61 E-value=1.3e+02 Score=15.24 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCccEEEEEEcCCC---hhhHHHHHhCCCEEe
Q 042035 97 LEAAIKKCRTRTVLRITLHVDPFR---TPAVNLYKKFGFQVD 135 (158)
Q Consensus 97 ~~~~~~~~~~~g~~~i~~~~~~~n---~~~~~~y~~~Gf~~~ 135 (158)
...+.+.|++.|++.+.++=...- ..+...-++.|..+.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEE
Confidence 567788888999988877622211 223344455666543
No 378
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=21.55 E-value=1.5e+02 Score=20.59 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=19.8
Q ss_pred ccEEEEEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 109 VLRITLHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 109 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
+..+.+.|.. -.++++||++ +||+.....
T Consensus 5 i~Hi~l~V~D-le~s~~FY~~~LG~~~~~~~ 34 (303)
T TIGR03211 5 LGHVELRVLD-LEESLKHYTDVLGLEETGRD 34 (303)
T ss_pred eeEEEEEeCC-HHHHHHHHHHhcCCEEeeec
Confidence 4455665533 4678999976 999886543
No 379
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=21.29 E-value=1.8e+02 Score=18.87 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=20.1
Q ss_pred EEEEEEcCCChhhHHHHHhCCCEEeeeecc
Q 042035 111 RITLHVDPFRTPAVNLYKKFGFQVDALIQG 140 (158)
Q Consensus 111 ~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 140 (158)
.+.+.+. +-..+..+++++||........
T Consensus 80 E~E~~v~-D~~~~~~il~~LGF~~~~~VkK 108 (178)
T COG1437 80 EIEIEVS-DVEKALEILKRLGFKEVAVVKK 108 (178)
T ss_pred eEEEEeC-CHHHHHHHHHHcCCceeeEEEE
Confidence 4455544 3356889999999998876643
No 380
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=21.20 E-value=1.7e+02 Score=19.04 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEcC
Q 042035 93 GEALLEAAIKKCRTRTVLRITLHVDP 118 (158)
Q Consensus 93 g~~l~~~~~~~~~~~g~~~i~~~~~~ 118 (158)
|+.++.++++.+...|++.+.+.+..
T Consensus 29 g~~li~~~l~~l~~~gi~~i~iv~~~ 54 (221)
T cd06422 29 GKPLIDHALDRLAAAGIRRIVVNTHH 54 (221)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEccC
Confidence 45688888888887888888776543
No 381
>PRK05309 30S ribosomal protein S11; Validated
Probab=21.00 E-value=2.1e+02 Score=17.35 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=36.4
Q ss_pred cCccCCcHHHHH-HHHHHHHHHhCCccEEEEEEc---CCChhhHHHHHhCCCEEeee
Q 042035 85 ENYRGQGHGEAL-LEAAIKKCRTRTVLRITLHVD---PFRTPAVNLYKKFGFQVDAL 137 (158)
Q Consensus 85 ~~~r~~Gig~~l-~~~~~~~~~~~g~~~i~~~~~---~~n~~~~~~y~~~Gf~~~~~ 137 (158)
-..++.-++..+ .+.+...+.+.|+..+.+.+. +....+++.+.+.|..+...
T Consensus 53 g~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I 109 (128)
T PRK05309 53 GSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSI 109 (128)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEE
Confidence 334444555444 455677788889999888875 34566788888889987653
No 382
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=20.93 E-value=2.1e+02 Score=17.44 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=12.9
Q ss_pred EEEEEECCeEEEEEEEe
Q 042035 53 LLYIQIHGQVVGYVMYA 69 (158)
Q Consensus 53 ~~~~~~~~~~vG~~~~~ 69 (158)
+.+...+|.+|||+.+.
T Consensus 37 ~~l~~~~g~Pvaf~~WA 53 (133)
T PF02794_consen 37 YRLYSEDGRPVAFCSWA 53 (133)
T ss_pred EEEEEeCCeEEEEEEhh
Confidence 33334899999999985
No 383
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=20.77 E-value=5.5e+02 Score=22.09 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=48.7
Q ss_pred CeEEEEEEEeccCcc--CCcHHHHHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEeeee
Q 042035 74 LSASITKLAVKENYR--GQGHGEALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDALI 138 (158)
Q Consensus 74 ~~~~i~~~~v~~~~r--~~Gig~~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 138 (158)
....+..+.-++.+- |+.+-...+..-+..+++.|++.|++...+..+....+..++|+-+..+.
T Consensus 348 kpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~ 414 (1027)
T PRK09525 348 KPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEA 414 (1027)
T ss_pred EEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEec
Confidence 445666666665444 44566777888888999999999999766666777788889999887664
No 384
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=20.76 E-value=1.6e+02 Score=16.02 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=13.7
Q ss_pred HHHhcCCceEEEE-EECCeEEEEEEE
Q 042035 44 EELKKKNSGLLYI-QIHGQVVGYVMY 68 (158)
Q Consensus 44 ~~~~~~~~~~~~~-~~~~~~vG~~~~ 68 (158)
..+...+...+.+ ..+|+++|++..
T Consensus 78 ~~~~~~~~~~~~vv~~~g~~~Gvit~ 103 (109)
T cd04583 78 GLVLKRGPKYVPVVDEDGKLVGLITR 103 (109)
T ss_pred HHHHHcCCceeeEECCCCeEEEEEeh
Confidence 3333333333344 346899998864
No 385
>PHA02324 hypothetical protein
Probab=20.71 E-value=52 Score=15.50 Aligned_cols=9 Identities=67% Similarity=1.184 Sum_probs=5.6
Q ss_pred eccCccCCc
Q 042035 83 VKENYRGQG 91 (158)
Q Consensus 83 v~~~~r~~G 91 (158)
-...|||+|
T Consensus 38 akK~YRGQG 46 (47)
T PHA02324 38 AKKPYRGQG 46 (47)
T ss_pred ccCcccCCC
Confidence 345677776
No 386
>PRK07198 hypothetical protein; Validated
Probab=20.69 E-value=1.9e+02 Score=21.53 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=34.7
Q ss_pred cCccCCcHHHHHHHHHHHHHHhCCccEE-EEEEcCCChhhHHHHHhCCCEEeeeec
Q 042035 85 ENYRGQGHGEALLEAAIKKCRTRTVLRI-TLHVDPFRTPAVNLYKKFGFQVDALIQ 139 (158)
Q Consensus 85 ~~~r~~Gig~~l~~~~~~~~~~~g~~~i-~~~~~~~n~~~~~~y~~~Gf~~~~~~~ 139 (158)
+++|..|+|.++++ ..|+.++ .+-+ .|+.-..-...+|-++.++..
T Consensus 329 ~D~RdyGlGAQILr-------dLGV~Km~RLLT--Nnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 329 QDMRFQELMPDVLH-------WLGIRRIHRLVS--MSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred CcceehhHHHHHHH-------HhCCChhhhhcC--CCHHHHHHHHhCCCEEEEEec
Confidence 58999999998874 5688888 5553 344466777899999998764
No 387
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=20.51 E-value=1.8e+02 Score=16.38 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCccEEEEEE
Q 042035 95 ALLEAAIKKCRTRTVLRITLHV 116 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~ 116 (158)
.+++.+.+.+.+.|+.++...+
T Consensus 51 ~~i~~~~e~~~~~G~~Rv~t~i 72 (92)
T PF01910_consen 51 ALIKEAHEALFEAGAKRVVTVI 72 (92)
T ss_dssp HHHHHHHHHHHCTTSSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEE
Confidence 3566677777788888887764
No 388
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.46 E-value=1.8e+02 Score=16.36 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=15.4
Q ss_pred HHHHHhcCCceEEEEEE-CCeEEEEEEE
Q 042035 42 FDEELKKKNSGLLYIQI-HGQVVGYVMY 68 (158)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~~~~vG~~~~ 68 (158)
..+.+...+...+.+.+ +|+++|++..
T Consensus 89 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~ 116 (122)
T cd04803 89 AAEIMVENKIGCLPVVDDKGTLVGIITR 116 (122)
T ss_pred HHHHHHHcCCCeEEEEcCCCCEEEEEEH
Confidence 33444444444444444 4889998864
No 389
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=20.33 E-value=1.7e+02 Score=16.10 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCccEEEEEEcCCChhhHHHHHhCCCEEee
Q 042035 95 ALLEAAIKKCRTRTVLRITLHVDPFRTPAVNLYKKFGFQVDA 136 (158)
Q Consensus 95 ~l~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~y~~~Gf~~~~ 136 (158)
.++..+...++..|...... ..++...+.+.+.|+...-
T Consensus 60 ~~L~~~~~~~~~~~~~~~l~---~~~~~~~~~l~~~g~~~~~ 98 (107)
T cd07042 60 EALEELVKDLRKRGVELYLA---GLNPQVRELLERAGLLDEI 98 (107)
T ss_pred HHHHHHHHHHHHCCCEEEEe---cCCHHHHHHHHHcCcHHHh
Confidence 34445555556666543333 3556888999999997543
No 390
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=20.30 E-value=1.8e+02 Score=16.25 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=15.1
Q ss_pred HHHHhcCCce-EEEEEECCeEEEEEEEe
Q 042035 43 DEELKKKNSG-LLYIQIHGQVVGYVMYA 69 (158)
Q Consensus 43 ~~~~~~~~~~-~~~~~~~~~~vG~~~~~ 69 (158)
...+...+.. ..++..+++++|++...
T Consensus 82 l~~~~~~~~~~~pVv~~~~~~~Gvit~~ 109 (114)
T cd04602 82 NEILRESKKGKLPIVNDDGELVALVTRS 109 (114)
T ss_pred HHHHHhcCCCceeEECCCCeEEEEEEHH
Confidence 3344344333 44444468899998653
No 391
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=20.27 E-value=1.9e+02 Score=16.86 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=17.5
Q ss_pred EEEcCCChhhHHHHHh-CCCEEeeee
Q 042035 114 LHVDPFRTPAVNLYKK-FGFQVDALI 138 (158)
Q Consensus 114 ~~~~~~n~~~~~~y~~-~Gf~~~~~~ 138 (158)
+.+...-..|+.||++ +|+++....
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~ 30 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLT 30 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEE
Confidence 4443445678999975 999888655
No 392
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=20.17 E-value=1.8e+02 Score=16.22 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHHhcCCceEEEEEE-CCeEEEEEEE
Q 042035 42 FDEELKKKNSGLLYIQI-HGQVVGYVMY 68 (158)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~~~~vG~~~~ 68 (158)
....+...+...+.+.+ +|+++|.+..
T Consensus 89 ~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~ 116 (122)
T cd04585 89 AAELMLERKISGLPVVDDQGRLVGIITE 116 (122)
T ss_pred HHHHHHHcCCCceeEECCCCcEEEEEEH
Confidence 33344444444344444 5899998864
No 393
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=20.14 E-value=1.7e+02 Score=16.81 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=9.0
Q ss_pred HHHHHhCCCEEe
Q 042035 124 VNLYKKFGFQVD 135 (158)
Q Consensus 124 ~~~y~~~Gf~~~ 135 (158)
..+|+.+|+...
T Consensus 46 ~~lY~~lg~~~~ 57 (115)
T PF13911_consen 46 RKLYKALGLKRG 57 (115)
T ss_pred HHHHHHhCCccc
Confidence 578888888763
No 394
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=20.02 E-value=1.9e+02 Score=18.99 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEcCC
Q 042035 94 EALLEAAIKKCRTRTVLRITLHVDPF 119 (158)
Q Consensus 94 ~~l~~~~~~~~~~~g~~~i~~~~~~~ 119 (158)
+.++.+.++.+...|++.+.+.+...
T Consensus 29 ~~li~~~l~~l~~~gi~~i~vv~~~~ 54 (229)
T cd02523 29 KPLLERQIETLKEAGIDDIVIVTGYK 54 (229)
T ss_pred EEHHHHHHHHHHHCCCceEEEEeccC
Confidence 46777777777777888888776653
Done!