BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042038
         (187 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q24UT2|SYA_DESHY Alanine--tRNA ligase OS=Desulfitobacterium hafniense (strain Y51)
           GN=alaS PE=3 SV=1
          Length = 875

 Score = 33.5 bits (75), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 94  VADVPIEAALVPARGKINISTSADLMADKLLSSPYVLGDIESGSLNLTSVANLHGEVTML 153
           V  VP+ AA V A+    +  +ADL+ DK+     VLG    G +N  +V      VT +
Sbjct: 767 VEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGVLVLGAAVEGKVNWVTV------VTPV 820

Query: 154 KFLSLHA 160
               LHA
Sbjct: 821 GLRGLHA 827


>sp|Q5BK83|T106A_RAT Transmembrane protein 106A OS=Rattus norvegicus GN=Tmem106a PE=2
           SV=1
          Length = 261

 Score = 31.6 bits (70), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 14  AIFLFIFVILITTLSLTIFKPKQPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNR 73
           ++FL + + L+   SLTIF      I  HPV L + T      +V LN T   ++ I N 
Sbjct: 94  SVFLAVTICLLI-FSLTIFFLYPRNIVVHPVGLNSSTVAFDETHVQLNMT--NVLNITNS 150

Query: 74  NYGSFKYRNTTAHVNYRGGIVADV 97
           N+        TA V ++  +V  V
Sbjct: 151 NFYPVTVTQLTAEVLHQTSVVGQV 174


>sp|P78036|ATCL_MYCPN Probable cation-transporting P-type ATPase OS=Mycoplasma pneumoniae
           (strain ATCC 29342 / M129) GN=pacL PE=3 SV=1
          Length = 872

 Score = 31.6 bits (70), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 12  VTAIFLFIFVILITTLSLTIFKPKQPEITAHPVALENITTGGGYPNVTLNATLRMIVTID 71
           +++IF+F+ +I I  L L     K  ++TAHPV +     G  +  V L  T+  +V + 
Sbjct: 813 LSSIFVFLLIIFINPLGLVFSTLK--DLTAHPVLI-----GYSFGGVLLYMTINEVVKLI 865

Query: 72  NRNYGS 77
             +YGS
Sbjct: 866 RLSYGS 871


>sp|Q5NZ93|GCSP_AROAE Glycine dehydrogenase [decarboxylating] OS=Aromatoleum aromaticum
           (strain EbN1) GN=gcvP PE=3 SV=1
          Length = 972

 Score = 31.2 bits (69), Expect = 4.2,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 25/123 (20%)

Query: 88  NYRGGIVADVPIEAALVPARGKINISTSADLMADKLLSSPYVLG-DIESGSLN------- 139
           N RG I+ D+    A + A+G + ++ ++DLMA  LL SP  +G DI  GS         
Sbjct: 228 NERGEII-DLSGTVAALKAKGAV-VAIASDLMALVLLKSPGTMGADIALGSAQRFGVPMG 285

Query: 140 ---------LTSVANLHGEVTMLKFLSLHARAMSTCDFTLWTKTQ-----KVDSN-CKSK 184
                     T  AN+      +  +S  AR  +    TL T+ Q     K +SN C S+
Sbjct: 286 FGGPHAAFFATREANVRAMPGRIIGVSKDARGKTALRMTLQTREQHIRREKANSNICTSQ 345

Query: 185 IKL 187
           + L
Sbjct: 346 VLL 348


>sp|Q046D1|RPOC_LACGA DNA-directed RNA polymerase subunit beta' OS=Lactobacillus gasseri
           (strain ATCC 33323 / DSM 20243) GN=rpoC PE=3 SV=1
          Length = 1223

 Score = 30.8 bits (68), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 80  YRNTTAHVNYRG-GIVADVPIEAALVPARGKINISTSADLMADKLLSSPYVLG 131
           Y  T A     G G++ D P EAA+  A G I+  T   L AD +   P+  G
Sbjct: 500 YWLTQAERGREGEGMIFDSPAEAAIAYANGDIHYHTRIGLAADSMPEKPWPKG 552


>sp|Q74L94|RPOC_LACJO DNA-directed RNA polymerase subunit beta' OS=Lactobacillus
           johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpoC
           PE=3 SV=1
          Length = 1224

 Score = 30.8 bits (68), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 80  YRNTTAHVNYRG-GIVADVPIEAALVPARGKINISTSADLMADKLLSSPYVLG 131
           Y  T A     G G++ D P EAA+  A G I+  T   L AD +   P+  G
Sbjct: 500 YWLTQAERGREGEGMIFDSPAEAAIAYANGDIHYHTRIGLAADSMPEKPWPKG 552


>sp|A4J2K4|SYA_DESRM Alanine--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1)
           GN=alaS PE=3 SV=1
          Length = 878

 Score = 30.8 bits (68), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 96  DVPIEAALVPARGKINISTSADLMADKLLSSPYVLGDIESGSLNLTSVA--NLHGE 149
           +VP+ A++V A    N+    D++ DK+ S   +LG      +NL +    +LHG+
Sbjct: 771 EVPVLASVVAAPDMDNLRGMVDMLRDKMGSGVILLGSTAGEKVNLVAAVTKDLHGQ 826


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,349,266
Number of Sequences: 539616
Number of extensions: 2411699
Number of successful extensions: 5342
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5338
Number of HSP's gapped (non-prelim): 14
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)