Query 042038
Match_columns 187
No_of_seqs 116 out of 696
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 6E-48 1.3E-52 309.6 26.9 186 2-187 32-219 (219)
2 PF03168 LEA_2: Late embryogen 99.6 1.3E-14 2.8E-19 102.0 8.0 98 67-167 1-100 (101)
3 smart00769 WHy Water Stress an 99.0 7.4E-09 1.6E-13 73.3 10.0 86 57-145 10-97 (100)
4 PF07092 DUF1356: Protein of u 98.6 2.2E-06 4.8E-11 69.2 13.6 91 23-117 89-180 (238)
5 COG5608 LEA14-like dessication 97.6 0.0078 1.7E-07 45.5 15.0 109 34-154 30-140 (161)
6 PF12751 Vac7: Vacuolar segreg 96.9 0.0032 6.9E-08 54.3 7.2 36 60-95 346-381 (387)
7 PLN03160 uncharacterized prote 91.9 0.34 7.3E-06 39.0 4.9 30 3-32 30-59 (219)
8 PRK10893 lipopolysaccharide ex 87.3 12 0.00026 29.5 10.4 20 33-52 37-56 (192)
9 PF11906 DUF3426: Protein of u 83.9 13 0.00027 27.6 8.7 76 39-117 48-135 (149)
10 PRK05529 cell division protein 79.9 19 0.00042 29.5 9.1 45 36-80 58-126 (255)
11 KOG3950 Gamma/delta sarcoglyca 74.3 2.2 4.7E-05 35.0 1.9 22 56-77 102-124 (292)
12 PF00927 Transglut_C: Transglu 69.3 35 0.00076 23.6 7.3 60 58-117 11-75 (107)
13 PF04478 Mid2: Mid2 like cell 68.3 5.9 0.00013 30.1 3.0 35 3-38 47-81 (154)
14 PF09865 DUF2092: Predicted pe 67.7 29 0.00063 27.8 7.1 39 57-95 34-74 (214)
15 PF14927 Neurensin: Neurensin 65.9 5.3 0.00012 30.0 2.3 27 12-40 49-75 (140)
16 PF12505 DUF3712: Protein of u 63.8 18 0.0004 26.1 4.8 26 61-86 99-124 (125)
17 PF14874 PapD-like: Flagellar- 62.9 45 0.00098 22.6 10.3 55 60-117 18-72 (102)
18 PF04790 Sarcoglycan_1: Sarcog 60.0 1E+02 0.0022 25.6 14.3 18 58-75 82-100 (264)
19 PF06072 Herpes_US9: Alphaherp 57.0 3 6.4E-05 26.5 -0.4 12 3-14 29-40 (60)
20 PF14155 DUF4307: Domain of un 53.1 81 0.0018 22.5 11.7 55 34-101 29-86 (112)
21 PF11395 DUF2873: Protein of u 52.7 5.1 0.00011 23.0 0.2 20 14-33 14-33 (43)
22 PF09624 DUF2393: Protein of u 51.2 97 0.0021 22.8 7.3 37 60-96 60-96 (149)
23 PTZ00382 Variant-specific surf 49.0 13 0.00029 25.9 1.9 15 21-35 81-95 (96)
24 PF10907 DUF2749: Protein of u 44.4 30 0.00064 22.4 2.7 16 20-35 13-28 (66)
25 PRK06531 yajC preprotein trans 43.9 10 0.00022 27.4 0.6 11 28-38 16-26 (113)
26 COG1580 FliL Flagellar basal b 42.4 1.2E+02 0.0026 23.2 6.3 30 2-32 13-42 (159)
27 COG5353 Uncharacterized protei 41.9 22 0.00049 26.9 2.2 32 2-34 2-33 (161)
28 PRK07021 fliL flagellar basal 41.6 68 0.0015 24.3 4.9 15 78-92 78-92 (162)
29 COG4698 Uncharacterized protei 41.5 21 0.00046 27.9 2.1 26 28-53 30-58 (197)
30 PF10830 DUF2553: Protein of u 38.3 64 0.0014 21.6 3.7 30 73-102 7-36 (76)
31 PF05545 FixQ: Cbb3-type cytoc 37.2 13 0.00028 22.4 0.3 8 29-36 27-34 (49)
32 PF12505 DUF3712: Protein of u 36.6 1.6E+02 0.0034 21.1 6.4 62 93-158 2-65 (125)
33 PF11837 DUF3357: Domain of un 36.3 12 0.00026 26.6 0.0 16 2-17 23-38 (106)
34 COG1862 YajC Preprotein transl 34.9 14 0.0003 25.9 0.2 19 20-38 15-33 (97)
35 PF09911 DUF2140: Uncharacteri 34.4 59 0.0013 25.4 3.7 14 24-37 18-31 (187)
36 PF06919 Phage_T4_Gp30_7: Phag 34.2 1.1E+02 0.0024 21.8 4.6 38 72-109 40-78 (121)
37 PRK15188 fimbrial chaperone pr 33.5 62 0.0014 26.2 3.8 33 68-104 166-198 (228)
38 PRK05886 yajC preprotein trans 33.0 14 0.00031 26.5 -0.0 15 24-38 14-28 (109)
39 PF04573 SPC22: Signal peptida 32.8 75 0.0016 24.7 4.0 13 31-43 31-43 (175)
40 COG4736 CcoQ Cbb3-type cytochr 32.7 17 0.00037 23.2 0.3 9 28-36 26-34 (60)
41 PF06024 DUF912: Nucleopolyhed 32.5 67 0.0014 22.5 3.4 11 24-34 79-89 (101)
42 PF14940 TMEM219: Transmembran 32.0 2.8E+02 0.006 22.5 7.7 36 59-95 81-118 (223)
43 PF07423 DUF1510: Protein of u 31.8 27 0.00058 28.2 1.4 17 2-18 8-24 (217)
44 PF11322 DUF3124: Protein of u 31.7 1.7E+02 0.0038 21.5 5.5 51 60-113 21-74 (125)
45 PF03923 Lipoprotein_16: Uncha 31.3 2.3E+02 0.0049 21.3 6.9 46 35-80 68-116 (159)
46 PF04790 Sarcoglycan_1: Sarcog 30.4 23 0.00051 29.3 0.8 14 2-15 9-22 (264)
47 PRK07718 fliL flagellar basal 30.1 76 0.0017 23.5 3.5 8 28-35 24-31 (142)
48 smart00084 NMU Neuromedin U. N 29.1 34 0.00074 17.9 1.0 9 28-36 17-25 (26)
49 PTZ00116 signal peptidase; Pro 28.9 1.4E+02 0.0031 23.5 4.9 18 34-51 36-53 (185)
50 PF11606 AlcCBM31: Family 31 c 28.8 43 0.00094 22.9 1.7 22 71-92 4-27 (93)
51 PF14055 NVEALA: NVEALA protei 28.2 40 0.00087 21.5 1.5 27 24-50 15-41 (65)
52 COG3121 FimC P pilus assembly 28.1 1.2E+02 0.0027 24.5 4.7 42 67-113 166-207 (235)
53 PF07705 CARDB: CARDB; InterP 27.8 1.8E+02 0.0039 19.0 7.4 55 60-118 17-71 (101)
54 PF15012 DUF4519: Domain of un 27.7 74 0.0016 20.0 2.5 12 24-35 45-56 (56)
55 PF02070 NMU: Neuromedin U; I 27.6 39 0.00084 17.5 1.1 9 28-36 17-25 (25)
56 TIGR00739 yajC preprotein tran 26.8 38 0.00083 22.9 1.3 16 22-37 11-26 (84)
57 PF08113 CoxIIa: Cytochrome c 26.0 25 0.00053 19.7 0.2 12 15-26 10-21 (34)
58 PF11797 DUF3324: Protein of u 25.7 2.7E+02 0.0059 20.4 11.2 91 36-149 27-119 (140)
59 cd01324 cbb3_Oxidase_CcoQ Cyto 25.2 37 0.00081 20.5 0.9 8 29-36 28-35 (48)
60 CHL00031 psbT photosystem II p 24.9 58 0.0013 18.1 1.5 12 28-39 18-29 (33)
61 PF14283 DUF4366: Domain of un 24.7 68 0.0015 25.9 2.5 12 28-39 179-190 (218)
62 KOG4386 Uncharacterized conser 24.5 43 0.00092 30.9 1.4 50 32-86 407-457 (809)
63 PRK13150 cytochrome c-type bio 24.3 1.4E+02 0.003 22.9 4.0 34 66-99 80-115 (159)
64 PRK11875 psbT photosystem II r 24.0 51 0.0011 18.1 1.2 12 28-39 18-29 (31)
65 PF08372 PRT_C: Plant phosphor 23.0 18 0.00039 27.6 -1.0 15 27-41 121-135 (156)
66 PF10633 NPCBM_assoc: NPCBM-as 22.8 2.2E+02 0.0047 18.3 7.1 31 103-144 45-75 (78)
67 PRK05585 yajC preprotein trans 22.8 38 0.00081 24.1 0.6 16 22-37 26-41 (106)
68 PF06835 LptC: Lipopolysacchar 22.3 3.2E+02 0.0069 20.0 9.9 44 60-103 51-94 (176)
69 PRK05696 fliL flagellar basal 21.9 1E+02 0.0023 23.5 3.0 25 66-92 76-100 (170)
70 PF11027 DUF2615: Protein of u 21.7 35 0.00075 24.3 0.3 7 29-35 69-75 (103)
71 PF10814 DUF2562: Protein of u 21.6 65 0.0014 23.7 1.7 30 7-37 89-118 (133)
72 PF12321 DUF3634: Protein of u 21.0 39 0.00084 24.2 0.4 14 28-41 13-28 (108)
73 PF07509 DUF1523: Protein of u 20.4 4.2E+02 0.0091 20.7 7.1 28 24-53 18-45 (175)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=6e-48 Score=309.58 Aligned_cols=186 Identities=31% Similarity=0.501 Sum_probs=174.3
Q ss_pred CcccceEeehHHHHHHHHHHHHHHheeeEEeecCCCeEEEEeEEeceEEeeC-CCCceeEeEEEEEEEEEECCCeEeEEE
Q 042038 2 DTRKLKICCGVTAIFLFIFVILITTLSLTIFKPKQPEITAHPVALENITTGG-GYPNVTLNATLRMIVTIDNRNYGSFKY 80 (187)
Q Consensus 2 ~~r~~~~C~~~~~~~~vll~~~~~il~~lv~rP~~P~~~v~~~~l~~~~~~~-~~~~~~ln~~l~~~v~v~NPN~~~i~y 80 (187)
|||+|.+||+|++++++++++++++++|++||||+|+|+++++++++|+++. +.++..+|++++++++++|||+++|+|
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y 111 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKY 111 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEE
Confidence 6788888999998888888888999999999999999999999999999875 234678999999999999999999999
Q ss_pred eCeEEEEEECCeEEEeEEecCceecCCceeEEEEEEEEeeeeeccCccccccccCCeEEEEEEEEEEEEEEEeEEEeeeE
Q 042038 81 RNTTAHVNYRGGIVADVPIEAALVPARGKINISTSADLMADKLLSSPYVLGDIESGSLNLTSVANLHGEVTMLKFLSLHA 160 (187)
Q Consensus 81 ~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~i~~~~~~~~~~v~~~~~l~~d~~~g~v~l~~~~~v~~rv~~~~~~~~~~ 160 (187)
++++++++|+|+.+|++.+|+|+|++|+++.+++++.+.++++.++++|.+|.++|.++|+++++++||+++++++++++
T Consensus 112 ~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v 191 (219)
T PLN03160 112 SNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSVPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHV 191 (219)
T ss_pred cCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccchhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEE
Confidence 99999999999999999999999999999999999998888877678899999999999999999999999999999999
Q ss_pred EEEEEeEEEEEcccceee-ccccceecC
Q 042038 161 RAMSTCDFTLWTKTQKVD-SNCKSKIKL 187 (187)
Q Consensus 161 ~~~v~C~i~v~~~~~~v~-~~C~~~~k~ 187 (187)
+++++|++.++..++.++ ++|+.++|+
T Consensus 192 ~~~v~C~v~V~~~~~~i~~~~C~~~~~~ 219 (219)
T PLN03160 192 VVKMNCTMTVNITSQAIQGQKCKRHVDL 219 (219)
T ss_pred EEEEEeEEEEECCCCEEeccEecccccC
Confidence 999999999999999999 999999885
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.56 E-value=1.3e-14 Score=102.04 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=73.8
Q ss_pred EEEEECCCeEeEEEeCeEEEEEECCeEEE-eEEecCceecCCceeEEEEEEEEeeeeeccCccccccccCCeEEEEEEEE
Q 042038 67 IVTIDNRNYGSFKYRNTTAHVNYRGGIVA-DVPIEAALVPARGKINISTSADLMADKLLSSPYVLGDIESGSLNLTSVAN 145 (187)
Q Consensus 67 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg-~~~~p~f~q~~~~t~~i~~~~~~~~~~v~~~~~l~~d~~~g~v~l~~~~~ 145 (187)
+++++|||.++++|++.+++++|+|+.+| ....++|+|++++++.+.+++.++...+. ..+.++. +|..++++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~--~~l~~~~-~~~~~~~v~~~ 77 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLP--RLLKDLL-AGRVPFDVTYR 77 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHH--HHHHHHH-HTTSCEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHH--HHHHhhh-ccccceEEEEE
Confidence 57999999999999999999999999999 78899999999999999888877765542 3455555 66777888888
Q ss_pred EEEEEEE-eEEEeeeEEEEEEeE
Q 042038 146 LHGEVTM-LKFLSLHARAMSTCD 167 (187)
Q Consensus 146 v~~rv~~-~~~~~~~~~~~v~C~ 167 (187)
++|++++ ......+.+..++|+
T Consensus 78 ~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 78 IRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEcccceeeeEEEeEEeE
Confidence 9999985 333333344445553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.98 E-value=7.4e-09 Score=73.32 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=68.2
Q ss_pred ceeEeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEEec-CceecCCceeEEEEEEEEeeeeeccCccccccccC
Q 042038 57 NVTLNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIE-AALVPARGKINISTSADLMADKLLSSPYVLGDIES 135 (187)
Q Consensus 57 ~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p-~f~q~~~~t~~i~~~~~~~~~~v~~~~~l~~d~~~ 135 (187)
...++.++.+++.++|||.+.+.|++++..++|+|..+|++..+ ++.+++++++.+++++.+. .... ..+..++.+
T Consensus 10 ~~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~~--~~~~~~l~~ 86 (100)
T smart00769 10 VSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFLA--EALIWHIAN 86 (100)
T ss_pred ccceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhHh--HHHHHhhcc
Confidence 34688999999999999999999999999999999999999996 7999999999999988873 2221 345556655
Q ss_pred Ce-EEEEEEEE
Q 042038 136 GS-LNLTSVAN 145 (187)
Q Consensus 136 g~-v~l~~~~~ 145 (187)
|. ++++++++
T Consensus 87 ~~~~~y~l~g~ 97 (100)
T smart00769 87 GEEIPYRLDGK 97 (100)
T ss_pred CCCccEEEEEE
Confidence 53 55544433
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.58 E-value=2.2e-06 Score=69.17 Aligned_cols=91 Identities=12% Similarity=0.155 Sum_probs=69.6
Q ss_pred HHHheeeEEeecCCCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEEecCc
Q 042038 23 LITTLSLTIFKPKQPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIEAA 102 (187)
Q Consensus 23 ~~~il~~lv~rP~~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f 102 (187)
..++++||+ ||.-.++-.++......++. ...+...++.-.+++.|||++.+.-.+.++++.|....+|.+.....
T Consensus 89 ~~L~iFFLf--PRsV~v~~~gv~s~~V~f~~--~~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~ 164 (238)
T PF07092_consen 89 SGLVIFFLF--PRSVTVSPVGVKSVTVSFNP--DKSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNI 164 (238)
T ss_pred HHheEEEEe--CcEEEEecCcEEEEEEEEeC--CCCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecce
Confidence 344455555 98776666665555555553 34567778888999999999999999999999999999999987655
Q ss_pred -eecCCceeEEEEEEE
Q 042038 103 -LVPARGKINISTSAD 117 (187)
Q Consensus 103 -~q~~~~t~~i~~~~~ 117 (187)
.++|++.+.+..++.
T Consensus 165 ~~I~Prs~~q~~~tV~ 180 (238)
T PF07092_consen 165 TVIGPRSSKQVNYTVK 180 (238)
T ss_pred EEecccCCceEEEEee
Confidence 688888888777654
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.63 E-value=0.0078 Score=45.49 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=74.9
Q ss_pred cCCCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEEe-cCceecCCceeEE
Q 042038 34 PKQPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPI-EAALVPARGKINI 112 (187)
Q Consensus 34 P~~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~-p~f~q~~~~t~~i 112 (187)
.+.|.+.--.+..-... .....+-.++.++|||-+.+--.+.+..++-+|..+|.+.. .++..+|++..++
T Consensus 30 ~~~p~ve~~ka~wGkvt--------~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tv 101 (161)
T COG5608 30 VKKPGVESMKAKWGKVT--------NSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETV 101 (161)
T ss_pred cCCCCceEEEEEEEEEe--------ccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEE
Confidence 35666655555444332 23456777899999999999999999999999999999886 6689999999999
Q ss_pred EEEEEEeeeeeccCccccccccCCeE-EEEEEEEEEEEEEEeE
Q 042038 113 STSADLMADKLLSSPYVLGDIESGSL-NLTSVANLHGEVTMLK 154 (187)
Q Consensus 113 ~~~~~~~~~~v~~~~~l~~d~~~g~v-~l~~~~~v~~rv~~~~ 154 (187)
.+++.++-.+.- ..+...+.+|+= +. +.++.+.+++++
T Consensus 102 dv~l~~d~~~~k--e~w~~hi~ngErs~I--r~~i~~~v~vg~ 140 (161)
T COG5608 102 DVPLRLDNSKIK--EWWVTHIENGERSTI--RVRIKGVVKVGG 140 (161)
T ss_pred EEEEEEehHHHH--HHHHHHhhccCcccE--EEEEEEEEEEcc
Confidence 988877754432 223345666642 22 233444455444
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=96.93 E-value=0.0032 Score=54.26 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=30.0
Q ss_pred EeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEE
Q 042038 60 LNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVA 95 (187)
Q Consensus 60 ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg 95 (187)
-..-|+++|.+.|||.+.|.-+++++++|-+-..+|
T Consensus 346 qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 346 QELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred ceEEEeeEEEEECCCeEEEEeccceeeeEecCCccC
Confidence 445677889999999999999999999987665554
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=91.85 E-value=0.34 Score=39.03 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=17.9
Q ss_pred cccceEeehHHHHHHHHHHHHHHheeeEEe
Q 042038 3 TRKLKICCGVTAIFLFIFVILITTLSLTIF 32 (187)
Q Consensus 3 ~r~~~~C~~~~~~~~vll~~~~~il~~lv~ 32 (187)
+++.+.|+.||.+++.++.++++++..++|
T Consensus 30 ~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~ 59 (219)
T PLN03160 30 KTRRRNCIKCCGCITATLLILATTILVLVF 59 (219)
T ss_pred ccccccceEEHHHHHHHHHHHHHHHHheee
Confidence 345555666666666666666666655554
No 8
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=87.34 E-value=12 Score=29.46 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=16.9
Q ss_pred ecCCCeEEEEeEEeceEEee
Q 042038 33 KPKQPEITAHPVALENITTG 52 (187)
Q Consensus 33 rP~~P~~~v~~~~l~~~~~~ 52 (187)
.++.|.|.+++++...|+.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46789999999999888865
No 9
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=83.92 E-value=13 Score=27.59 Aligned_cols=76 Identities=13% Similarity=0.005 Sum_probs=48.8
Q ss_pred EEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCCeEeEEEeCeEEEEE-ECCeEEEeEEe-c----------CceecC
Q 042038 39 ITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRNYGSFKYRNTTAHVN-YRGGIVADVPI-E----------AALVPA 106 (187)
Q Consensus 39 ~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~-Y~g~~lg~~~~-p----------~f~q~~ 106 (187)
-.++.+++++..+.. ...-+-.+.++.+++|.......|-..+++++ -+|+.+++-.+ | ....++
T Consensus 48 ~~~~~l~i~~~~~~~---~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~p 124 (149)
T PF11906_consen 48 RDIDALKIESSDLRP---VPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPP 124 (149)
T ss_pred cCcceEEEeeeeEEe---ecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCC
Confidence 344555554444332 11223445667789999999999999999988 67888887766 4 234666
Q ss_pred CceeEEEEEEE
Q 042038 107 RGKINISTSAD 117 (187)
Q Consensus 107 ~~t~~i~~~~~ 117 (187)
+++..+.+.+.
T Consensus 125 g~~~~~~~~~~ 135 (149)
T PF11906_consen 125 GESVPFRLRLE 135 (149)
T ss_pred CCeEEEEEEee
Confidence 66666555443
No 10
>PRK05529 cell division protein FtsQ; Provisional
Probab=79.91 E-value=19 Score=29.49 Aligned_cols=45 Identities=4% Similarity=-0.065 Sum_probs=27.9
Q ss_pred CCeEEEEeEEeceEEeeC--------C--CCceeEeEEE--------------EEEEEEECCCeEeEEE
Q 042038 36 QPEITAHPVALENITTGG--------G--YPNVTLNATL--------------RMIVTIDNRNYGSFKY 80 (187)
Q Consensus 36 ~P~~~v~~~~l~~~~~~~--------~--~~~~~ln~~l--------------~~~v~v~NPN~~~i~y 80 (187)
.|.|.+.++.+++-...+ + ...+.+..+. +++++-+.||.+.|+-
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~tl~I~V 126 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGTIVVRV 126 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCEEEEEE
Confidence 599999999998765321 0 0111222221 6788999999666555
No 11
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=74.32 E-value=2.2 Score=34.96 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=17.4
Q ss_pred CceeEeEEEEEEEEEECCC-eEe
Q 042038 56 PNVTLNATLRMIVTIDNRN-YGS 77 (187)
Q Consensus 56 ~~~~ln~~l~~~v~v~NPN-~~~ 77 (187)
++.++..+=+++++++||| .+.
T Consensus 102 ~~l~~~S~rnvtvnarn~~g~v~ 124 (292)
T KOG3950|consen 102 SPLYLQSARNVTVNARNPNGKVT 124 (292)
T ss_pred CceEEEeccCeeEEccCCCCcee
Confidence 3457777778999999999 764
No 12
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=69.27 E-value=35 Score=23.63 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=38.5
Q ss_pred eeEeEEEEEEEEEECCC--e-EeEEEeCeEEEEEECCeEEE--eEEecCceecCCceeEEEEEEE
Q 042038 58 VTLNATLRMIVTIDNRN--Y-GSFKYRNTTAHVNYRGGIVA--DVPIEAALVPARGKINISTSAD 117 (187)
Q Consensus 58 ~~ln~~l~~~v~v~NPN--~-~~i~y~~~~~~v~Y~g~~lg--~~~~p~f~q~~~~t~~i~~~~~ 117 (187)
..+.-++.+.+++.||. . -.+...=....++|.|.... .........+|+++..+...+.
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 34566778889999998 3 23555446667789998653 3445667888888888666544
No 13
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=68.27 E-value=5.9 Score=30.11 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=20.4
Q ss_pred cccceEeehHHHHHHHHHHHHHHheeeEEeecCCCe
Q 042038 3 TRKLKICCGVTAIFLFIFVILITTLSLTIFKPKQPE 38 (187)
Q Consensus 3 ~r~~~~C~~~~~~~~vll~~~~~il~~lv~rP~~P~ 38 (187)
.|+..+.|++-+...+++++ +++++|+..|+|.-+
T Consensus 47 nknIVIGvVVGVGg~ill~i-l~lvf~~c~r~kktd 81 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGI-LALVFIFCIRRKKTD 81 (154)
T ss_pred CccEEEEEEecccHHHHHHH-HHhheeEEEecccCc
Confidence 45566666665545555543 444467777887643
No 14
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=67.69 E-value=29 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=31.8
Q ss_pred ceeEeEEEEEEEEEECCCeEeEEE--eCeEEEEEECCeEEE
Q 042038 57 NVTLNATLRMIVTIDNRNYGSFKY--RNTTAHVNYRGGIVA 95 (187)
Q Consensus 57 ~~~ln~~l~~~v~v~NPN~~~i~y--~~~~~~v~Y~g~~lg 95 (187)
...+..+-+.++.++=|||+.+.+ +..+..++|+|..+.
T Consensus 34 gqklq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CceEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEE
Confidence 356777777899999999888777 688889999998765
No 15
>PF14927 Neurensin: Neurensin
Probab=65.89 E-value=5.3 Score=29.97 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHheeeEEeecCCCeEE
Q 042038 12 VTAIFLFIFVILITTLSLTIFKPKQPEIT 40 (187)
Q Consensus 12 ~~~~~~vll~~~~~il~~lv~rP~~P~~~ 40 (187)
.+.+++++++++++++.|++ |++++..
T Consensus 49 i~g~l~Ll~Gi~~l~vgY~v--P~~~e~~ 75 (140)
T PF14927_consen 49 ISGLLLLLLGIVALTVGYLV--PPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHHHhhccc--CCcceec
Confidence 34445566677777788887 8666655
No 16
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=63.81 E-value=18 Score=26.06 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=19.6
Q ss_pred eEEEEEEEEEECCCeEeEEEeCeEEE
Q 042038 61 NATLRMIVTIDNRNYGSFKYRNTTAH 86 (187)
Q Consensus 61 n~~l~~~v~v~NPN~~~i~y~~~~~~ 86 (187)
..++..++.+.||..+++..++...+
T Consensus 99 g~~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 99 GINLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred cEEEEEEEEEcCCCeEEEEeccEEEe
Confidence 34556778899999988888777665
No 17
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=62.92 E-value=45 Score=22.63 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=30.2
Q ss_pred EeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEEecCceecCCceeEEEEEEE
Q 042038 60 LNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIEAALVPARGKINISTSAD 117 (187)
Q Consensus 60 ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~i~~~~~ 117 (187)
........++++|......+|.=..-. ..+..+ ...-+++...|+.+..+.+++.
T Consensus 18 ~g~~~~~~v~l~N~s~~p~~f~v~~~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 18 VGQTYSRTVTLTNTSSIPARFRVRQPE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred cCCEEEEEEEEEECCCCCEEEEEEeCC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 444556678899988555444311000 011112 2233566788888888777665
No 18
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=60.00 E-value=1e+02 Score=25.64 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=11.5
Q ss_pred eeEeEEEEEEEEEECCC-e
Q 042038 58 VTLNATLRMIVTIDNRN-Y 75 (187)
Q Consensus 58 ~~ln~~l~~~v~v~NPN-~ 75 (187)
..+..+=+++++++|+| .
T Consensus 82 l~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 82 LVIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEEecCceEEEEecCCCc
Confidence 34444445677788888 5
No 19
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=56.96 E-value=3 Score=26.52 Aligned_cols=12 Identities=8% Similarity=0.362 Sum_probs=5.1
Q ss_pred cccceEeehHHH
Q 042038 3 TRKLKICCGVTA 14 (187)
Q Consensus 3 ~r~~~~C~~~~~ 14 (187)
||+|.+|.++.+
T Consensus 29 rRrc~~~v~~v~ 40 (60)
T PF06072_consen 29 RRRCRLAVAIVF 40 (60)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 20
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=53.05 E-value=81 Score=22.48 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=26.9
Q ss_pred cCCCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCC-eEeEEEeCeEEEEEECCeEEEeEE--ecC
Q 042038 34 PKQPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRN-YGSFKYRNTTAHVNYRGGIVADVP--IEA 101 (187)
Q Consensus 34 P~~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN-~~~i~y~~~~~~v~Y~g~~lg~~~--~p~ 101 (187)
...|.++-+.+ +|.... ......+|+ ++-. |. ..-=.-. ...|++..+|.-. +||
T Consensus 29 ~~~~~v~~~~~---gf~vv~---d~~v~v~f~--Vtr~-~~~~a~C~Vr----A~~~d~aeVGrreV~vp~ 86 (112)
T PF14155_consen 29 FGSPPVSAEVI---GFEVVD---DSTVEVTFD--VTRD-PGRPAVCIVR----ALDYDGAEVGRREVLVPP 86 (112)
T ss_pred ccCCCceEEEE---EEEECC---CCEEEEEEE--EEEC-CCCCEEEEEE----EEeCCCCEEEEEEEEECC
Confidence 55666644444 566542 234444443 3333 66 2221111 2257788888644 565
No 21
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=52.73 E-value=5.1 Score=22.98 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHheeeEEee
Q 042038 14 AIFLFIFVILITTLSLTIFK 33 (187)
Q Consensus 14 ~~~~vll~~~~~il~~lv~r 33 (187)
+++++.+.++.++++|+++-
T Consensus 14 l~~llflv~imliif~f~le 33 (43)
T PF11395_consen 14 LSFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444555666676653
No 22
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=51.22 E-value=97 Score=22.85 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=27.9
Q ss_pred EeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEe
Q 042038 60 LNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVAD 96 (187)
Q Consensus 60 ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~ 96 (187)
.+-++.+..+++|-.+..+..=..++++..+++..+.
T Consensus 60 ~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 60 YSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred eccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCc
Confidence 3445666789999999889888889998886654444
No 23
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=49.00 E-value=13 Score=25.86 Aligned_cols=15 Identities=7% Similarity=-0.170 Sum_probs=8.1
Q ss_pred HHHHHheeeEEeecC
Q 042038 21 VILITTLSLTIFKPK 35 (187)
Q Consensus 21 ~~~~~il~~lv~rP~ 35 (187)
+++.++++|+++|-|
T Consensus 81 ~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 81 GLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHhheeEEeec
Confidence 344445566666643
No 24
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=44.36 E-value=30 Score=22.44 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=11.5
Q ss_pred HHHHHHheeeEEeecC
Q 042038 20 FVILITTLSLTIFKPK 35 (187)
Q Consensus 20 l~~~~~il~~lv~rP~ 35 (187)
+++.+.+..|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4455566678889998
No 25
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=43.91 E-value=10 Score=27.44 Aligned_cols=11 Identities=0% Similarity=0.138 Sum_probs=7.6
Q ss_pred eeEEeecCCCe
Q 042038 28 SLTIFKPKQPE 38 (187)
Q Consensus 28 ~~lv~rP~~P~ 38 (187)
+|+.+||+.=+
T Consensus 16 ~yf~iRPQkKr 26 (113)
T PRK06531 16 IFFMQRQQKKQ 26 (113)
T ss_pred HHheechHHHH
Confidence 45679997654
No 26
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=42.39 E-value=1.2e+02 Score=23.20 Aligned_cols=30 Identities=10% Similarity=-0.136 Sum_probs=12.3
Q ss_pred CcccceEeehHHHHHHHHHHHHHHheeeEEe
Q 042038 2 DTRKLKICCGVTAIFLFIFVILITTLSLTIF 32 (187)
Q Consensus 2 ~~r~~~~C~~~~~~~~vll~~~~~il~~lv~ 32 (187)
+|++.++-.+..+++++++++ .+..+|+..
T Consensus 13 ~~k~~~~I~liv~ivl~~~a~-~~~~~~~~~ 42 (159)
T COG1580 13 KKKKSLWILLIVLIVLLALAG-AGYFFWFGS 42 (159)
T ss_pred CCCceeehHHHHHHHHHHHHH-HHHHHhhhc
Confidence 344444444343333333333 334455553
No 27
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.86 E-value=22 Score=26.94 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=13.6
Q ss_pred CcccceEeehHHHHHHHHHHHHHHheeeEEeec
Q 042038 2 DTRKLKICCGVTAIFLFIFVILITTLSLTIFKP 34 (187)
Q Consensus 2 ~~r~~~~C~~~~~~~~vll~~~~~il~~lv~rP 34 (187)
|+|...+..++..+++++++.+++ .+|....|
T Consensus 2 Rkk~~~~i~ii~viflai~~s~~~-~~~~s~~P 33 (161)
T COG5353 2 RKKHLIIIIIILVIFLAIILSIAL-FFWKSMKP 33 (161)
T ss_pred CceEeeeehhHHHHHHHHHHHHHH-HHhHhcCc
Confidence 443344444444444443333333 34555555
No 28
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=41.58 E-value=68 Score=24.32 Aligned_cols=15 Identities=0% Similarity=-0.188 Sum_probs=8.0
Q ss_pred EEEeCeEEEEEECCe
Q 042038 78 FKYRNTTAHVNYRGG 92 (187)
Q Consensus 78 i~y~~~~~~v~Y~g~ 92 (187)
-+|=...+.+-+.+.
T Consensus 78 ~rylkv~i~L~~~~~ 92 (162)
T PRK07021 78 DRVLYVGLTLRLPDE 92 (162)
T ss_pred ceEEEEEEEEEECCH
Confidence 355555555555544
No 29
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.55 E-value=21 Score=27.94 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=18.2
Q ss_pred eeEEeecCCCeEEEEeEEe-c--eEEeeC
Q 042038 28 SLTIFKPKQPEITAHPVAL-E--NITTGG 53 (187)
Q Consensus 28 ~~lv~rP~~P~~~v~~~~l-~--~~~~~~ 53 (187)
+..++.|+.|..++.+++= + .|.+++
T Consensus 30 ~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 30 ALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred heeeccCCCCCchhhccCcccceeEEEEc
Confidence 4568899998888887765 2 455543
No 30
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=38.32 E-value=64 Score=21.56 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=24.3
Q ss_pred CCeEeEEEeCeEEEEEECCeEEEeEEecCc
Q 042038 73 RNYGSFKYRNTTAHVNYRGGIVADVPIEAA 102 (187)
Q Consensus 73 PN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f 102 (187)
.|++.=+|.+....+|+.+..||...++..
T Consensus 7 Td~V~gkf~ng~l~LY~~~e~IG~~~~~~~ 36 (76)
T PF10830_consen 7 TDKVTGKFKNGGLELYHDNEMIGEIYMTEE 36 (76)
T ss_pred ecceEEEecCCcEEEEeccceeeeEccCCC
Confidence 356777888899999999999998777643
No 31
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=37.19 E-value=13 Score=22.35 Aligned_cols=8 Identities=13% Similarity=0.721 Sum_probs=5.5
Q ss_pred eEEeecCC
Q 042038 29 LTIFKPKQ 36 (187)
Q Consensus 29 ~lv~rP~~ 36 (187)
+.+++|+.
T Consensus 27 ~w~~~~~~ 34 (49)
T PF05545_consen 27 IWAYRPRN 34 (49)
T ss_pred HHHHcccc
Confidence 44688874
No 32
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=36.61 E-value=1.6e+02 Score=21.06 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=35.1
Q ss_pred EEEeEEecCceecCCceeEE-EEEEEEeeeeeccCccccccc-cCCeEEEEEEEEEEEEEEEeEEEee
Q 042038 93 IVADVPIEAALVPARGKINI-STSADLMADKLLSSPYVLGDI-ESGSLNLTSVANLHGEVTMLKFLSL 158 (187)
Q Consensus 93 ~lg~~~~p~f~q~~~~t~~i-~~~~~~~~~~v~~~~~l~~d~-~~g~v~l~~~~~v~~rv~~~~~~~~ 158 (187)
++|...+|+......++..+ +.++.+...... .+|.+++ .+..+.+.++++. +++++++..+
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d~~~f--~~f~~~~~~~~~~~l~l~g~~--~~~~g~l~~~ 65 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITDQDAF--TQFVTALLFNEEVTLTLRGKT--DTHLGGLPFS 65 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecCHHHH--HHHHHHHHhCCcEEEEEEEee--eEEEccEEEE
Confidence 57888899998833333332 223332221111 4455664 4566888887773 6777776444
No 33
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=36.34 E-value=12 Score=26.60 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred CcccceEeehHHHHHH
Q 042038 2 DTRKLKICCGVTAIFL 17 (187)
Q Consensus 2 ~~r~~~~C~~~~~~~~ 17 (187)
+|||..+|+..+++-+
T Consensus 23 ~~rR~~k~~~~i~~s~ 38 (106)
T PF11837_consen 23 RRRRPLKCLAAIFSSL 38 (106)
T ss_dssp ----------------
T ss_pred CcCCcchhHHHHHHHH
Confidence 3455456665544433
No 34
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=34.86 E-value=14 Score=25.95 Aligned_cols=19 Identities=16% Similarity=0.543 Sum_probs=11.8
Q ss_pred HHHHHHheeeEEeecCCCe
Q 042038 20 FVILITTLSLTIFKPKQPE 38 (187)
Q Consensus 20 l~~~~~il~~lv~rP~~P~ 38 (187)
+.+++++.+|+++||+.=+
T Consensus 15 ~vl~~~ifyFli~RPQrKr 33 (97)
T COG1862 15 LVLIFAIFYFLIIRPQRKR 33 (97)
T ss_pred HHHHHHHHHHhhcCHHHHH
Confidence 3344555567789997644
No 35
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=34.39 E-value=59 Score=25.44 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=9.8
Q ss_pred HHheeeEEeecCCC
Q 042038 24 ITTLSLTIFKPKQP 37 (187)
Q Consensus 24 ~~il~~lv~rP~~P 37 (187)
++++++.+++|+.|
T Consensus 18 ~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 18 VIVVFFRLFQPSEP 31 (187)
T ss_pred HhheeeEEEccCCC
Confidence 33346778999977
No 36
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=34.20 E-value=1.1e+02 Score=21.81 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=28.1
Q ss_pred CCCeEeEEE-eCeEEEEEECCeEEEeEEecCceecCCce
Q 042038 72 NRNYGSFKY-RNTTAHVNYRGGIVADVPIEAALVPARGK 109 (187)
Q Consensus 72 NPN~~~i~y-~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t 109 (187)
|||++-+.| ...++++-|.|..+.-+.=..++++--+|
T Consensus 40 ~pNYvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~RDLgT 78 (121)
T PF06919_consen 40 TPNYVFMRFENGITVSVTYNGSIFKIGLDDDHRERDLGT 78 (121)
T ss_pred CCCEEEEEecCCCEEEEEecCcEEEEEecCchhhcccCC
Confidence 999998999 58899999999876655555555544443
No 37
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=33.54 E-value=62 Score=26.19 Aligned_cols=33 Identities=12% Similarity=0.000 Sum_probs=18.8
Q ss_pred EEEECCCeEeEEEeCeEEEEEECCeEEEeEEecCcee
Q 042038 68 VTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIEAALV 104 (187)
Q Consensus 68 v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q 104 (187)
+.+.||..+-+.+.+.. .+|..+....++||.+
T Consensus 166 l~v~NpTPyyvtl~~l~----v~~~~~~~~mi~P~s~ 198 (228)
T PRK15188 166 LTITNPSPYYVSMVELY----SAGKKLPNTMVPPKGA 198 (228)
T ss_pred EEEECCCCcEEEEEEEE----ECCcccCCceECCCCc
Confidence 89999995555554433 3555553334555543
No 38
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=33.01 E-value=14 Score=26.46 Aligned_cols=15 Identities=0% Similarity=-0.013 Sum_probs=9.2
Q ss_pred HHheeeEEeecCCCe
Q 042038 24 ITTLSLTIFKPKQPE 38 (187)
Q Consensus 24 ~~il~~lv~rP~~P~ 38 (187)
+++++|+.+||+.=+
T Consensus 14 ~~i~yF~~iRPQkKr 28 (109)
T PRK05886 14 MGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHccHHHHH
Confidence 334456778997544
No 39
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=32.79 E-value=75 Score=24.66 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=7.7
Q ss_pred EeecCCCeEEEEe
Q 042038 31 IFKPKQPEITAHP 43 (187)
Q Consensus 31 v~rP~~P~~~v~~ 43 (187)
++.|..|..++.-
T Consensus 31 ~~~~~~~~~~i~v 43 (175)
T PF04573_consen 31 YFHPPSPSVSISV 43 (175)
T ss_pred hccCCCCceEEEE
Confidence 3667777665543
No 40
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.67 E-value=17 Score=23.20 Aligned_cols=9 Identities=11% Similarity=0.408 Sum_probs=6.7
Q ss_pred eeEEeecCC
Q 042038 28 SLTIFKPKQ 36 (187)
Q Consensus 28 ~~lv~rP~~ 36 (187)
+|.+|||+.
T Consensus 26 i~~ayr~~~ 34 (60)
T COG4736 26 IYFAYRPGK 34 (60)
T ss_pred HHHHhcccc
Confidence 466899975
No 41
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.55 E-value=67 Score=22.47 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=4.9
Q ss_pred HHheeeEEeec
Q 042038 24 ITTLSLTIFKP 34 (187)
Q Consensus 24 ~~il~~lv~rP 34 (187)
.++.+|.++|=
T Consensus 79 y~IyYFVILRe 89 (101)
T PF06024_consen 79 YAIYYFVILRE 89 (101)
T ss_pred hhheEEEEEec
Confidence 34444444443
No 42
>PF14940 TMEM219: Transmembrane 219
Probab=32.05 E-value=2.8e+02 Score=22.50 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=17.3
Q ss_pred eEeEEEEEEEEEE--CCCeEeEEEeCeEEEEEECCeEEE
Q 042038 59 TLNATLRMIVTID--NRNYGSFKYRNTTAHVNYRGGIVA 95 (187)
Q Consensus 59 ~ln~~l~~~v~v~--NPN~~~i~y~~~~~~v~Y~g~~lg 95 (187)
..+.++.+.+.+. +|| .++.+.....+..-+|.++|
T Consensus 81 ~~~vsl~i~l~l~p~~~~-~g~~~n~t~l~a~v~G~qlG 118 (223)
T PF14940_consen 81 PHNVSLAITLPLDPITPF-DGFSRNITHLYATVRGRQLG 118 (223)
T ss_pred ceEEeEEEEEEecccccC-CCccccceeEEEEEEhhccc
Confidence 3455555555554 444 22222333344555677776
No 43
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=31.78 E-value=27 Score=28.18 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=7.7
Q ss_pred CcccceEeehHHHHHHH
Q 042038 2 DTRKLKICCGVTAIFLF 18 (187)
Q Consensus 2 ~~r~~~~C~~~~~~~~v 18 (187)
||||.-+.+-+++++++
T Consensus 8 KrRK~N~iLNiaI~IV~ 24 (217)
T PF07423_consen 8 KRRKTNKILNIAIGIVS 24 (217)
T ss_pred HhhhhhhhHHHHHHHHH
Confidence 34444445545444333
No 44
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=31.70 E-value=1.7e+02 Score=21.47 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=28.8
Q ss_pred EeEEEEEEEEEECCC-eEeEEEeCeEEEEEE--CCeEEEeEEecCceecCCceeEEE
Q 042038 60 LNATLRMIVTIDNRN-YGSFKYRNTTAHVNY--RGGIVADVPIEAALVPARGKINIS 113 (187)
Q Consensus 60 ln~~l~~~v~v~NPN-~~~i~y~~~~~~v~Y--~g~~lg~~~~p~f~q~~~~t~~i~ 113 (187)
...+|++++++||.+ .-.+.-.+.+ || +|..+-.--=.|.+.+|-++..+-
T Consensus 21 ~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~v 74 (125)
T PF11322_consen 21 RPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFV 74 (125)
T ss_pred ceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEE
Confidence 445566788999999 6555543221 34 334444333355666666665543
No 45
>PF03923 Lipoprotein_16: Uncharacterized lipoprotein; InterPro: IPR005619 The function of this presumed lipoprotein is unknown. The family includes Escherichia coli YajG P36671 from SWISSPROT.
Probab=31.27 E-value=2.3e+02 Score=21.25 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=28.9
Q ss_pred CCCeEEEEeEEeceEEeeC--CCCceeEeEEEEEEEEEECCC-eEeEEE
Q 042038 35 KQPEITAHPVALENITTGG--GYPNVTLNATLRMIVTIDNRN-YGSFKY 80 (187)
Q Consensus 35 ~~P~~~v~~~~l~~~~~~~--~~~~~~ln~~l~~~v~v~NPN-~~~i~y 80 (187)
..+.-.--.+.+..|..+. +......++.+.+.+.++|+| .+.=.|
T Consensus 68 ~~~~~~~v~v~I~~l~~~v~~~~~~~~~~~~i~i~v~~~~~~~~~tK~y 116 (159)
T PF03923_consen 68 GPNANNNVTVQINELYADVKQGSLRYNATAKIQIEVTAQNGNGTFTKNY 116 (159)
T ss_pred CCCCceEEEEEehheEEEeccceEEEEEEEEEEEEEEEEcCCCEEEEEE
Confidence 3333334456666766643 333456788888899999999 554444
No 46
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=30.37 E-value=23 Score=29.35 Aligned_cols=14 Identities=0% Similarity=-0.225 Sum_probs=6.0
Q ss_pred CcccceEeehHHHH
Q 042038 2 DTRKLKICCGVTAI 15 (187)
Q Consensus 2 ~~r~~~~C~~~~~~ 15 (187)
|||+|.+||.+.++
T Consensus 9 wrk~cly~~vllL~ 22 (264)
T PF04790_consen 9 WRKRCLYLFVLLLF 22 (264)
T ss_pred hhhhhHHHHHHHHH
Confidence 34444444444433
No 47
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.14 E-value=76 Score=23.53 Aligned_cols=8 Identities=0% Similarity=-0.068 Sum_probs=4.2
Q ss_pred eeEEeecC
Q 042038 28 SLTIFKPK 35 (187)
Q Consensus 28 ~~lv~rP~ 35 (187)
+|++.++.
T Consensus 24 ~~~~~~~~ 31 (142)
T PRK07718 24 LVLVMGFS 31 (142)
T ss_pred HhhhcccC
Confidence 45555553
No 48
>smart00084 NMU Neuromedin U. Neuromedin U (NmU) is a vertebrate peptide which stimulates uterine smooth muscle contraction and causes selective vasoconstriction. Like most other active peptides, it is proteolytically processed from a larger precursor protein. The mature peptides are 8 (NmU-8) to 25 (NmU-25) residues long and C- terminally amidated. The sequence of the C-terminal extremity of NmU is extremely well conserved in mammals, birds and amphibians.
Probab=29.10 E-value=34 Score=17.88 Aligned_cols=9 Identities=22% Similarity=0.803 Sum_probs=6.9
Q ss_pred eeEEeecCC
Q 042038 28 SLTIFKPKQ 36 (187)
Q Consensus 28 ~~lv~rP~~ 36 (187)
-|++||||.
T Consensus 17 gyFLfRPRN 25 (26)
T smart00084 17 GYFLFRPRN 25 (26)
T ss_pred ceEEeccCC
Confidence 367899985
No 49
>PTZ00116 signal peptidase; Provisional
Probab=28.87 E-value=1.4e+02 Score=23.46 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=9.8
Q ss_pred cCCCeEEEEeEEeceEEe
Q 042038 34 PKQPEITAHPVALENITT 51 (187)
Q Consensus 34 P~~P~~~v~~~~l~~~~~ 51 (187)
+.+|..+++=-.+.++..
T Consensus 36 ~~~~~~~i~v~~V~~~~~ 53 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVY 53 (185)
T ss_pred CCCceeeEEEeecccccc
Confidence 455656655444556654
No 50
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=28.80 E-value=43 Score=22.90 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=17.6
Q ss_pred ECCC-eEeEEE-eCeEEEEEECCe
Q 042038 71 DNRN-YGSFKY-RNTTAHVNYRGG 92 (187)
Q Consensus 71 ~NPN-~~~i~y-~~~~~~v~Y~g~ 92 (187)
+||+ -++++| ++.++.+++.+.
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~d~ 27 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHKDN 27 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE--
T ss_pred CCcchhhCeeeecCceEEEEEecC
Confidence 4788 899999 899999998765
No 51
>PF14055 NVEALA: NVEALA protein
Probab=28.22 E-value=40 Score=21.53 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=19.8
Q ss_pred HHheeeEEeecCCCeEEEEeEEeceEE
Q 042038 24 ITTLSLTIFKPKQPEITAHPVALENIT 50 (187)
Q Consensus 24 ~~il~~lv~rP~~P~~~v~~~~l~~~~ 50 (187)
+++..|-+++.+.-+..+++..+.|..
T Consensus 15 ~~~ag~~~~~~~~~~~~lsdL~L~NVE 41 (65)
T PF14055_consen 15 AAVAGYNVYQSQNKEVNLSDLALANVE 41 (65)
T ss_pred hhheeeeEEEeccCccccchHHHHhHH
Confidence 445567788887777788888777765
No 52
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.13 E-value=1.2e+02 Score=24.45 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=26.6
Q ss_pred EEEEECCCeEeEEEeCeEEEEEECCeEEEeEEecCceecCCceeEEE
Q 042038 67 IVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIEAALVPARGKINIS 113 (187)
Q Consensus 67 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~i~ 113 (187)
.++++||-..-+.+.+..+.. +|..++ ....++.|+++..+.
T Consensus 166 ~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~ 207 (235)
T COG3121 166 LLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFP 207 (235)
T ss_pred EEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceee
Confidence 588999996666666666665 666665 344455555554433
No 53
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=27.76 E-value=1.8e+02 Score=19.00 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=32.7
Q ss_pred EeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEEecCceecCCceeEEEEEEEE
Q 042038 60 LNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIEAALVPARGKINISTSADL 118 (187)
Q Consensus 60 ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~i~~~~~~ 118 (187)
..-.+.+++.++|.-... -++..+.++.+|..++...++ ..+++++..+.++...
T Consensus 17 ~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i~--~L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTIP--SLAPGESETVTFTWTP 71 (101)
T ss_dssp TTSEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEES--EB-TTEEEEEEEEEE-
T ss_pred CCCEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEEC--CcCCCcEEEEEEEEEe
Confidence 334556677889975322 334566677888888777774 4456666666555443
No 54
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=27.72 E-value=74 Score=19.99 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=6.8
Q ss_pred HHheeeEEeecC
Q 042038 24 ITTLSLTIFKPK 35 (187)
Q Consensus 24 ~~il~~lv~rP~ 35 (187)
+++++|+.-||+
T Consensus 45 Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 45 IVVFVYLKTRPR 56 (56)
T ss_pred HhheeEEeccCC
Confidence 333456666774
No 55
>PF02070 NMU: Neuromedin U; InterPro: IPR008199 Neuromedin U (NmU) [, ] is a vertebrate peptide which stimulates uterine smooth muscle contraction and causes selective vasoconstriction. Like most other active peptides, it is proteolytically processed from a larger precursor protein. The mature peptides are 8 (NmU-8) to 25 (NmU-25) residues long and C-terminally amidated. The sequence of the C-terminal extremity of NmU is extremely well conserved.; GO: 0006940 regulation of smooth muscle contraction
Probab=27.62 E-value=39 Score=17.49 Aligned_cols=9 Identities=22% Similarity=0.803 Sum_probs=6.7
Q ss_pred eeEEeecCC
Q 042038 28 SLTIFKPKQ 36 (187)
Q Consensus 28 ~~lv~rP~~ 36 (187)
-|++||||.
T Consensus 17 gyFlfRPRN 25 (25)
T PF02070_consen 17 GYFLFRPRN 25 (25)
T ss_pred cEEEeccCC
Confidence 367899974
No 56
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=26.78 E-value=38 Score=22.92 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=9.6
Q ss_pred HHHHheeeEEeecCCC
Q 042038 22 ILITTLSLTIFKPKQP 37 (187)
Q Consensus 22 ~~~~il~~lv~rP~~P 37 (187)
+++++.+|+..||+.=
T Consensus 11 v~~~i~yf~~~rpqkK 26 (84)
T TIGR00739 11 LIFLIFYFLIIRPQRK 26 (84)
T ss_pred HHHHHHHHheechHHH
Confidence 3344446677888653
No 57
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=26.01 E-value=25 Score=19.68 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHh
Q 042038 15 IFLFIFVILITT 26 (187)
Q Consensus 15 ~~~vll~~~~~i 26 (187)
+++.++++.|++
T Consensus 10 ~vv~iLt~~ILv 21 (34)
T PF08113_consen 10 GVVMILTAFILV 21 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeHHHHHHHHHH
Confidence 344445555555
No 58
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=25.66 E-value=2.7e+02 Score=20.38 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=54.7
Q ss_pred CCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCCeEeEEEeCeEEEEEECCe--EEEeEEecCceecCCceeEEE
Q 042038 36 QPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGG--IVADVPIEAALVPARGKINIS 113 (187)
Q Consensus 36 ~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~--~lg~~~~p~f~q~~~~t~~i~ 113 (187)
.|.+.+.++..... |..-.+.+.++||...-+.==.+++.++..|. .+.......+...|.+.-.+
T Consensus 27 ~p~L~l~~v~~~~~-----------n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~- 94 (140)
T PF11797_consen 27 PPKLKLGKVKPGQI-----------NGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNF- 94 (140)
T ss_pred CcccEEeeeeeeEE-----------CCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEe-
Confidence 45666665554433 33344667889999544444456777778774 67777777788877775443
Q ss_pred EEEEEeeeeeccCccccccccCCeEEEEEEEEEEEE
Q 042038 114 TSADLMADKLLSSPYVLGDIESGSLNLTSVANLHGE 149 (187)
Q Consensus 114 ~~~~~~~~~v~~~~~l~~d~~~g~v~l~~~~~v~~r 149 (187)
.+...+ +.+..|...+++.++-..+
T Consensus 95 -~i~~~~----------~~lk~G~Y~l~~~~~~~~~ 119 (140)
T PF11797_consen 95 -PIPLGG----------KKLKPGKYTLKITAKSGKK 119 (140)
T ss_pred -EecCCC----------cCccCCEEEEEEEEEcCCc
Confidence 222211 2467888877765544333
No 59
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=25.22 E-value=37 Score=20.48 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=5.7
Q ss_pred eEEeecCC
Q 042038 29 LTIFKPKQ 36 (187)
Q Consensus 29 ~lv~rP~~ 36 (187)
+.+|+|+.
T Consensus 28 ~wa~~p~~ 35 (48)
T cd01324 28 VWAFRPGR 35 (48)
T ss_pred HHHhCCCc
Confidence 34789976
No 60
>CHL00031 psbT photosystem II protein T
Probab=24.94 E-value=58 Score=18.12 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.8
Q ss_pred eeEEeecCCCeE
Q 042038 28 SLTIFKPKQPEI 39 (187)
Q Consensus 28 ~~lv~rP~~P~~ 39 (187)
++.++--.+|++
T Consensus 18 FFAI~FRePPri 29 (33)
T CHL00031 18 FFAIFFREPPKV 29 (33)
T ss_pred HHhheecCCCCC
Confidence 444444455654
No 61
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=24.68 E-value=68 Score=25.86 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=6.6
Q ss_pred eeEEeecCCCeE
Q 042038 28 SLTIFKPKQPEI 39 (187)
Q Consensus 28 ~~lv~rP~~P~~ 39 (187)
+|-++|||....
T Consensus 179 YfK~~K~K~~~~ 190 (218)
T PF14283_consen 179 YFKFYKPKQEEK 190 (218)
T ss_pred EEEEeccccccc
Confidence 344567766544
No 62
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.48 E-value=43 Score=30.87 Aligned_cols=50 Identities=10% Similarity=-0.080 Sum_probs=35.2
Q ss_pred eecCCCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCC-eEeEEEeCeEEE
Q 042038 32 FKPKQPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRN-YGSFKYRNTTAH 86 (187)
Q Consensus 32 ~rP~~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN-~~~i~y~~~~~~ 86 (187)
=+|+.|+..++++.....++.+ ..-.++++.....||| +...+-.-..+.
T Consensus 407 ~~~n~~q~~~~tv~~~t~~l~~-----a~~~NIe~~~~~~~~~~~~E~~~~~lki~ 457 (809)
T KOG4386|consen 407 DLKNAKQNWIVTVTKVTLDLGN-----AIRGNIEFDENALNRNCHVENIIGFLKIG 457 (809)
T ss_pred hccccccceEEEeeehhhhhhh-----hccCcceeccccCCcccchheEEEEEEee
Confidence 4799999999998877666543 3455666778899999 776555533333
No 63
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.32 E-value=1.4e+02 Score=22.92 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=17.0
Q ss_pred EEEEEECCC-eEeEEEeCeEEEEEECCe-EEEeEEe
Q 042038 66 MIVTIDNRN-YGSFKYRNTTAHVNYRGG-IVADVPI 99 (187)
Q Consensus 66 ~~v~v~NPN-~~~i~y~~~~~~v~Y~g~-~lg~~~~ 99 (187)
+.+.+...+ .+.+.|...-=++|=.|+ .+..+.+
T Consensus 80 v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~ 115 (159)
T PRK13150 80 VNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTL 115 (159)
T ss_pred EEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEE
Confidence 344444444 555555555555554554 3455555
No 64
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=24.04 E-value=51 Score=18.05 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=5.4
Q ss_pred eeEEeecCCCeE
Q 042038 28 SLTIFKPKQPEI 39 (187)
Q Consensus 28 ~~lv~rP~~P~~ 39 (187)
++.++--.+|++
T Consensus 18 FFAIfFRepPri 29 (31)
T PRK11875 18 FFAIAFRDPPKI 29 (31)
T ss_pred HHhhhccCCCCC
Confidence 344443444543
No 65
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=22.96 E-value=18 Score=27.62 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=9.3
Q ss_pred eeeEEeecCCCeEEE
Q 042038 27 LSLTIFKPKQPEITA 41 (187)
Q Consensus 27 l~~lv~rP~~P~~~v 41 (187)
++|.++.-++|.+.-
T Consensus 121 l~~gly~~r~P~~R~ 135 (156)
T PF08372_consen 121 LIWGLYKLRHPRFRN 135 (156)
T ss_pred HHHHHHHhcCccccC
Confidence 345566667777754
No 66
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=22.83 E-value=2.2e+02 Score=18.28 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=16.5
Q ss_pred eecCCceeEEEEEEEEeeeeeccCccccccccCCeEEEEEEE
Q 042038 103 LVPARGKINISTSADLMADKLLSSPYVLGDIESGSLNLTSVA 144 (187)
Q Consensus 103 ~q~~~~t~~i~~~~~~~~~~v~~~~~l~~d~~~g~v~l~~~~ 144 (187)
..+++++..+++.+.+.. |...|..++++.+
T Consensus 45 ~l~pG~s~~~~~~V~vp~-----------~a~~G~y~v~~~a 75 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVPA-----------DAAPGTYTVTVTA 75 (78)
T ss_dssp -B-TTSEEEEEEEEEE-T-----------T--SEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEECCC-----------CCCCceEEEEEEE
Confidence 677778777776666443 3456666665543
No 67
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=22.80 E-value=38 Score=24.08 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=9.5
Q ss_pred HHHHheeeEEeecCCC
Q 042038 22 ILITTLSLTIFKPKQP 37 (187)
Q Consensus 22 ~~~~il~~lv~rP~~P 37 (187)
+++++.+|+.+||+.=
T Consensus 26 ii~~i~yf~~~RpqkK 41 (106)
T PRK05585 26 VFFAIFYFLIIRPQQK 41 (106)
T ss_pred HHHHHHHHHhccHHHH
Confidence 3444445677898653
No 68
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=22.33 E-value=3.2e+02 Score=19.95 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=18.3
Q ss_pred EeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEEecCce
Q 042038 60 LNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIEAAL 103 (187)
Q Consensus 60 ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~ 103 (187)
+...+...=.-++||.-.++..+..+.++-.+..--......+.
T Consensus 51 ~~~~l~A~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~i~A~~g~ 94 (176)
T PF06835_consen 51 LQWKLTAERAEHYPNSDTVELEDPSLIIYDDDGPEWTITADRGT 94 (176)
T ss_dssp --EEEE-SSEEEETTTTEEEEES-EEEEE-TT-EEEEEE-SEEE
T ss_pred EEEEEEEeEEEEecCCCcEEEeccEEEEEeCCCceEEEEeCEEE
Confidence 44444444445666622345566666655555433333334333
No 69
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.85 E-value=1e+02 Score=23.47 Aligned_cols=25 Identities=8% Similarity=0.222 Sum_probs=11.5
Q ss_pred EEEEEECCCeEeEEEeCeEEEEEECCe
Q 042038 66 MIVTIDNRNYGSFKYRNTTAHVNYRGG 92 (187)
Q Consensus 66 ~~v~v~NPN~~~i~y~~~~~~v~Y~g~ 92 (187)
++++...++ +-+|=...+.+.+++.
T Consensus 76 fvvNl~~~~--~~ryLkv~i~l~~~d~ 100 (170)
T PRK05696 76 FVFNVPGNG--RDRLVQIKVQLMVRGS 100 (170)
T ss_pred EEEEecCCC--CceEEEEEEEEEECCH
Confidence 334444444 2345555555555443
No 70
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.67 E-value=35 Score=24.25 Aligned_cols=7 Identities=29% Similarity=0.823 Sum_probs=4.9
Q ss_pred eEEeecC
Q 042038 29 LTIFKPK 35 (187)
Q Consensus 29 ~lv~rP~ 35 (187)
.+++||+
T Consensus 69 ly~~RP~ 75 (103)
T PF11027_consen 69 LYLLRPS 75 (103)
T ss_pred HHHcCch
Confidence 3468996
No 71
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=21.56 E-value=65 Score=23.70 Aligned_cols=30 Identities=3% Similarity=-0.013 Sum_probs=13.1
Q ss_pred eEeehHHHHHHHHHHHHHHheeeEEeecCCC
Q 042038 7 KICCGVTAIFLFIFVILITTLSLTIFKPKQP 37 (187)
Q Consensus 7 ~~C~~~~~~~~vll~~~~~il~~lv~rP~~P 37 (187)
++-+.++.+...+|++.++. |.++=|+..|
T Consensus 89 rRplliagv~~~vLagGavA-fsivRRs~~~ 118 (133)
T PF10814_consen 89 RRPLLIAGVAVAVLAGGAVA-FSIVRRSSRP 118 (133)
T ss_pred ccchHHHHHHHHHHhccceE-EEEeecCCCC
Confidence 34444444434444443433 3444455444
No 72
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=21.03 E-value=39 Score=24.22 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=7.0
Q ss_pred eeEEeecC--CCeEEE
Q 042038 28 SLTIFKPK--QPEITA 41 (187)
Q Consensus 28 ~~lv~rP~--~P~~~v 41 (187)
+||++-=+ .|.|.+
T Consensus 13 ~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 13 FWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHccccCceEEEE
Confidence 45554333 366654
No 73
>PF07509 DUF1523: Protein of unknown function (DUF1523); InterPro: IPR011088 This entry is represented by Bacteriophage phiNM3, A0EWY4 from SWISSPROT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are restricted to the Gammaproteobacteria and Epsilonproteobacteria, the function of these proteins is unknown.
Probab=20.45 E-value=4.2e+02 Score=20.65 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=20.1
Q ss_pred HHheeeEEeecCCCeEEEEeEEeceEEeeC
Q 042038 24 ITTLSLTIFKPKQPEITAHPVALENITTGG 53 (187)
Q Consensus 24 ~~il~~lv~rP~~P~~~v~~~~l~~~~~~~ 53 (187)
++.+=|. -|+.=...+.+..+.+.+++.
T Consensus 18 ~~~lhY~--lP~~dvvrItgtevkR~d~~~ 45 (175)
T PF07509_consen 18 AAFLHYT--LPQYDVVRITGTEVKRMDLDK 45 (175)
T ss_pred HHHeecc--CCcceEEEEeceEEEEecCCc
Confidence 3333444 499989999999999886653
Done!