Query 042038
Match_columns 187
No_of_seqs 116 out of 696
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 23:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.8 1.9E-08 6.5E-13 77.0 9.8 103 35-148 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.6 1.3E-08 4.3E-13 76.5 1.8 102 35-147 20-123 (151)
3 3but_A Uncharacterized protein 98.2 1.3E-05 4.4E-10 58.9 9.9 64 61-124 17-81 (136)
4 3j1r_A Archaeal adhesion filam 63.8 1.8 6.3E-05 21.9 0.4 18 13-30 6-23 (26)
5 3p5s_A CD38 molecule; cyclic A 45.6 4.4 0.00015 32.7 0.0 16 4-19 7-22 (278)
6 3me0_B PAPG protein; immunoglo 45.0 35 0.0012 24.1 4.6 84 32-116 9-105 (128)
7 2rdd_B UPF0092 membrane protei 27.7 9.6 0.00033 20.8 -0.5 12 24-35 13-24 (37)
8 3arc_T Photosystem II reaction 27.3 14 0.00047 19.7 0.1 12 28-39 18-29 (32)
9 2l0d_A Cell surface protein; s 25.0 1.7E+02 0.0057 20.0 10.2 67 36-116 2-69 (114)
10 2l6w_A Beta-type platelet-deri 30.5 16 0.00053 20.4 0.0 12 29-40 28-39 (39)
11 2kj1_A BM2 protein; cytoplasmi 21.6 21 0.00073 22.6 0.2 14 63-76 9-22 (89)
12 3my2_A Lipopolysaccharide expo 21.1 2.4E+02 0.0081 20.3 6.4 52 31-87 18-69 (175)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.84 E-value=1.9e-08 Score=77.04 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=82.4
Q ss_pred CCCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEEecC-ceecCCceeEEE
Q 042038 35 KQPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIEA-ALVPARGKINIS 113 (187)
Q Consensus 35 ~~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~-f~q~~~~t~~i~ 113 (187)
+.|++++.++++.+++.. ..++.+.++++|||...+.+...+.++.-+|..++++..+. +.+++++++.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~--------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~ 114 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD--------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLD 114 (174)
T ss_dssp CCCEEEEEEEEEEEECSS--------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEE
T ss_pred CCCEEEEEEeEEeccccc--------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEE
Confidence 679999999999877653 36677889999999999999999999999999999999865 799999999999
Q ss_pred EEEEEeeeeeccCcccccccc-CCeEEEEEEEEEEE
Q 042038 114 TSADLMADKLLSSPYVLGDIE-SGSLNLTSVANLHG 148 (187)
Q Consensus 114 ~~~~~~~~~v~~~~~l~~d~~-~g~v~l~~~~~v~~ 148 (187)
+++.+....+ ..+.+|+. .+.++.++++++.+
T Consensus 115 Vpv~v~~~~l---~~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 115 VPVKVAYSIA---VSLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp EEEEESHHHH---HHTCCCCCSSEEECEEEEEEEEE
T ss_pred EEEEEEHHHH---HHHHHhcCCCCccceEEEEEEEe
Confidence 9988875433 23445553 45677776655443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.58 E-value=1.3e-08 Score=76.45 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=79.4
Q ss_pred CCCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEEec-CceecCCceeEEE
Q 042038 35 KQPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVPIE-AALVPARGKINIS 113 (187)
Q Consensus 35 ~~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p-~f~q~~~~t~~i~ 113 (187)
+.|++++.++++.+++. ...++.+.++++|||...+.+...+.++.-+|..++++..+ ++..++++++.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~--------~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~ 91 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR--------DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALD 91 (151)
T ss_dssp CSCCCBCSEEEECCCTT--------TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEE
T ss_pred CCCEEEEEEeEEeccCc--------ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEE
Confidence 67999998888876653 34578888999999999999999999999999999999985 5899999999999
Q ss_pred EEEEEeeeeeccCccccccc-cCCeEEEEEEEEEE
Q 042038 114 TSADLMADKLLSSPYVLGDI-ESGSLNLTSVANLH 147 (187)
Q Consensus 114 ~~~~~~~~~v~~~~~l~~d~-~~g~v~l~~~~~v~ 147 (187)
+++.+....+ ..+.+++ ..+.++.++++++.
T Consensus 92 vpv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 92 IPVVVPYSIL---FNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp ECCCEEHHHH---HHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEHHHH---HHHHHhcccCCcccEEEEEEEE
Confidence 8877774333 2344444 34678887655554
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.19 E-value=1.3e-05 Score=58.88 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=55.6
Q ss_pred eEEEEEEEEEECCCeEeEEEeCeEEEEEECCeEEEeEE-ecCceecCCceeEEEEEEEEeeeeec
Q 042038 61 NATLRMIVTIDNRNYGSFKYRNTTAHVNYRGGIVADVP-IEAALVPARGKINISTSADLMADKLL 124 (187)
Q Consensus 61 n~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~-~p~f~q~~~~t~~i~~~~~~~~~~v~ 124 (187)
.+.+.+.+.++|||.+.+.++..+.+++..|..+|++. ...+..++.+++.+.+++.++-.++.
T Consensus 17 ~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~ 81 (136)
T 3but_A 17 QTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLR 81 (136)
T ss_dssp EEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHT
T ss_pred EEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhH
Confidence 45677889999999999999999999999999999988 57889999999998888887755443
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=63.82 E-value=1.8 Score=21.85 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHheeeE
Q 042038 13 TAIFLFIFVILITTLSLT 30 (187)
Q Consensus 13 ~~~~~vll~~~~~il~~l 30 (187)
+.+++++++++++++.|+
T Consensus 6 A~~lLIviav~aaVllyl 23 (26)
T 3j1r_A 6 ATLLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555556555554454
No 5
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=45.61 E-value=4.4 Score=32.69 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=0.0
Q ss_pred ccceEeehHHHHHHHH
Q 042038 4 RKLKICCGVTAIFLFI 19 (187)
Q Consensus 4 r~~~~C~~~~~~~~vl 19 (187)
|++.+|++++++++++
T Consensus 7 ~~~~~~l~~~~~~l~~ 22 (278)
T 3p5s_A 7 PRKKLCWCVLLFFLVA 22 (278)
T ss_dssp ----------------
T ss_pred CceEEeehHHHHHHHH
Confidence 4555666555444433
No 6
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=45.03 E-value=35 Score=24.10 Aligned_cols=84 Identities=8% Similarity=0.079 Sum_probs=42.5
Q ss_pred eecCCCeEEEEeEEeceEEeeCC--CCceeE--eEEEEEEEEE-EC--C-----CeEeEEE-eCeEEEEEECCeEEEeEE
Q 042038 32 FKPKQPEITAHPVALENITTGGG--YPNVTL--NATLRMIVTI-DN--R-----NYGSFKY-RNTTAHVNYRGGIVADVP 98 (187)
Q Consensus 32 ~rP~~P~~~v~~~~l~~~~~~~~--~~~~~l--n~~l~~~v~v-~N--P-----N~~~i~y-~~~~~~v~Y~g~~lg~~~ 98 (187)
.||..|.++++.=.++.=.+..- ..+.++ +...++.+.+ .| | .++.+-- +..+..++-+|+..++..
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~ 88 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETT 88 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEE
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeEEEEEECCeecccee
Confidence 58999999998865542222110 001111 1122233333 22 1 2333444 377777888999888877
Q ss_pred ecCceecCCceeEEEEEE
Q 042038 99 IEAALVPARGKINISTSA 116 (187)
Q Consensus 99 ~p~f~q~~~~t~~i~~~~ 116 (187)
+ .|+..+.++..+..++
T Consensus 89 ~-~~~~~~s~tvtV~S~L 105 (128)
T 3me0_B 89 M-RWYKAGTQNLTIGSRL 105 (128)
T ss_dssp E-EESSSEEEEEEEEEEE
T ss_pred E-EEEecCCcEEEEEEEE
Confidence 7 4444333443333333
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=27.66 E-value=9.6 Score=20.84 Aligned_cols=12 Identities=17% Similarity=0.359 Sum_probs=7.2
Q ss_pred HHheeeEEeecC
Q 042038 24 ITTLSLTIFKPK 35 (187)
Q Consensus 24 ~~il~~lv~rP~ 35 (187)
+++.+|+..||+
T Consensus 13 ~~ifYFl~iRPQ 24 (37)
T 2rdd_B 13 GLIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHhhhH
Confidence 344456677885
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=27.32 E-value=14 Score=19.71 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=5.9
Q ss_pred eeEEeecCCCeE
Q 042038 28 SLTIFKPKQPEI 39 (187)
Q Consensus 28 ~~lv~rP~~P~~ 39 (187)
++.++-..+|++
T Consensus 18 FFAI~FRePPri 29 (32)
T 3arc_T 18 FFAIFFREPPRI 29 (32)
T ss_dssp HHHHHTSCCCCC
T ss_pred HHhhhhcCCCCC
Confidence 344444555654
No 9
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=25.03 E-value=1.7e+02 Score=19.95 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=40.7
Q ss_pred CCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCC-eEeEEEeCeEEEEEECCeEEEeEEecCceecCCceeEEEE
Q 042038 36 QPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRN-YGSFKYRNTTAHVNYRGGIVADVPIEAALVPARGKINIST 114 (187)
Q Consensus 36 ~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN-~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~i~~ 114 (187)
.|+..+.+++-. .+.-+-...++++++|.- ... ....+.++-+|..++...+++ ..++.++.+.+
T Consensus 2 ~PDL~vt~itP~---------~~~~~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~ 67 (114)
T 2l0d_A 2 IPDLVPVSLTPV---------TVVPNTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTS--LESENSTNVDF 67 (114)
T ss_dssp CCCEEEEEEECS---------EECTTSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESC--BCBTCEEEEEE
T ss_pred CCCcEEEeccCC---------CcCCCCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceeccc--ccCCCEEEEEE
Confidence 366666665321 223344456677999987 332 456677777999999888775 34455555554
Q ss_pred EE
Q 042038 115 SA 116 (187)
Q Consensus 115 ~~ 116 (187)
+.
T Consensus 68 ~w 69 (114)
T 2l0d_A 68 HW 69 (114)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 10
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=30.50 E-value=16 Score=20.40 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=7.5
Q ss_pred eEEeecCCCeEE
Q 042038 29 LTIFKPKQPEIT 40 (187)
Q Consensus 29 ~lv~rP~~P~~~ 40 (187)
..+.+-+.|+++
T Consensus 28 Li~~w~qKPrYe 39 (39)
T 2l6w_A 28 LIMLWQKKPRYE 39 (39)
Confidence 344567778764
No 11
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=21.56 E-value=21 Score=22.63 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=3.9
Q ss_pred EEEEEEEEECCCeE
Q 042038 63 TLRMIVTIDNRNYG 76 (187)
Q Consensus 63 ~l~~~v~v~NPN~~ 76 (187)
..++.+.++|||+-
T Consensus 9 gv~lki~ir~pnke 22 (89)
T 2kj1_A 9 GVNMKIRIKGPNKE 22 (89)
T ss_dssp ---------CCCHH
T ss_pred cCceEEEecCCCHH
Confidence 34567899999953
No 12
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} PDB: 4b54_A
Probab=21.08 E-value=2.4e+02 Score=20.32 Aligned_cols=52 Identities=6% Similarity=-0.047 Sum_probs=12.3
Q ss_pred EeecCCCeEEEEeEEeceEEeeCCCCceeEeEEEEEEEEEECCCeEeEEEeCeEEEE
Q 042038 31 IFKPKQPEITAHPVALENITTGGGYPNVTLNATLRMIVTIDNRNYGSFKYRNTTAHV 87 (187)
Q Consensus 31 v~rP~~P~~~v~~~~l~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v 87 (187)
..+++.|.|.+.+++...++-. +.+...+...=..+.|+.-...++.-.+.+
T Consensus 18 ~~~~~~Pdy~~~~~~~~~~d~~-----G~l~~~l~A~~~~hy~~~~~t~~~~P~~~~ 69 (175)
T 3my2_A 18 VVNNNDPTYKSEHTDTLVYNPE-----GALSYRLIAQHVEYYSDQAVSWFTQPVLTT 69 (175)
T ss_dssp ------------------------------CEEEECSSEEEETTTTEEEEESCEEEE
T ss_pred cCCCCCCcEEEEeeEEEEECCC-----CCEEEEEEeeeEEEecCCCCEEEeccEEEE
Confidence 4578999999999988887754 344444444444555552223444444443
Done!