BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042039
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEV|A Chain A, Crystal Structure Of The Tpr Domain Of Xanthomonas
Campestris Ybgf
pdb|2XEV|B Chain B, Crystal Structure Of The Tpr Domain Of Xanthomonas
Campestris Ybgf
pdb|2XEV|C Chain C, Crystal Structure Of The Tpr Domain Of Xanthomonas
Campestris Ybgf
Length = 129
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 87 VTFNVIMDELCKNGKMDEASRL----LDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEE 142
+NV D L KNGK D+AS+L L+L PNA + L + + T AE
Sbjct: 4 TAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYW--LGESYYATRNFQLAEA 60
Query: 143 LFGSMESMGCKHDDVSYNIL-----INGYCKNKEVEEAL 176
F + S HD + +L G KN E ++ L
Sbjct: 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTL 99
>pdb|2QYV|A Chain A, Crystal Structure Of Putative Xaa-His Dipeptidase
(Yp_718209.1) From Haemophilus Somnus 129pt At 2.11 A
Resolution
pdb|2QYV|B Chain B, Crystal Structure Of Putative Xaa-His Dipeptidase
(Yp_718209.1) From Haemophilus Somnus 129pt At 2.11 A
Resolution
Length = 487
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 201 LFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVE-AVELFRTLGILKCEL 259
+F + +VE ++F ++ N +G+ +N ++E VE ++G+LK E
Sbjct: 301 IFTLEKVEKPQQVFSSQCTKNI---IHCLNVLPNGVVRNSDVIENVVETSLSIGVLKTED 357
Query: 260 DIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLF 319
+ L+ L +SG+ +A L +SL A + NI + G G ++H
Sbjct: 358 NFVRSTXLVRSLIESGKSYVA-SLLKSL------ASLAQGNINLSG-DYPGWEPQSHSDI 409
Query: 320 LDMEENAVA 328
LD+ + A
Sbjct: 410 LDLTKTIYA 418
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 69 EAKRLFFEMMDQGVQPSVVTFNVIM---------DELCKNGKMDEASRLLDLMVQRDVRP 119
EA RL+ E GVQ S +NV++ E N + + M+ V P
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103
Query: 120 NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175
N T++ A ++ M++ G + SY + G+C+ + ++A
Sbjct: 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
>pdb|2DJ6|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DTT|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|D Chain D, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|E Chain E, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|F Chain F, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
Length = 115
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 209 HALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLI 268
HA+K+ + + DV T I+G KNGY+++ +EL + + + ELD + N +
Sbjct: 15 HAVKVGDHWE--DVHGHTFFLEVAIEGEIKNGYVMDFLELRKIVEEITKELDHRNLNNIF 72
Query: 269 D 269
+
Sbjct: 73 E 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,817,672
Number of Sequences: 62578
Number of extensions: 435721
Number of successful extensions: 906
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 17
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)