Query 042039
Match_columns 376
No_of_seqs 758 out of 1463
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 13:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1E-59 2.2E-64 426.3 45.7 363 13-375 434-798 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.6E-59 1.6E-63 420.7 46.2 368 8-375 464-856 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.6E-53 7.8E-58 380.9 37.8 350 11-375 153-503 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.5E-52 3.2E-57 376.9 36.6 354 11-376 118-472 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.5E-51 5.3E-56 377.4 38.1 354 10-376 216-635 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4.5E-51 9.8E-56 375.7 37.9 355 9-376 180-599 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-27 8.4E-32 221.8 41.2 349 13-373 530-878 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-26 3.9E-31 217.3 43.1 330 17-357 568-897 (899)
9 PRK11788 tetratricopeptide rep 100.0 2.9E-25 6.4E-30 188.5 33.7 307 54-367 38-354 (389)
10 PRK15174 Vi polysaccharide exp 100.0 3.8E-24 8.3E-29 190.1 40.9 334 18-361 44-382 (656)
11 PRK11788 tetratricopeptide rep 100.0 8.5E-25 1.8E-29 185.7 33.3 307 19-332 38-354 (389)
12 KOG4626 O-linked N-acetylgluco 99.9 7.1E-25 1.5E-29 179.8 26.5 336 15-366 115-489 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 9.3E-23 2E-27 181.9 40.0 255 101-360 309-571 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 5.3E-24 1.1E-28 174.8 27.6 324 16-349 150-508 (966)
15 PRK15174 Vi polysaccharide exp 99.9 3.7E-22 8E-27 177.5 40.7 337 15-359 75-419 (656)
16 TIGR00990 3a0801s09 mitochondr 99.9 6.5E-22 1.4E-26 176.5 41.9 337 18-361 129-538 (615)
17 PRK11447 cellulose synthase su 99.9 2E-21 4.4E-26 184.2 42.0 338 15-358 302-738 (1157)
18 PRK11447 cellulose synthase su 99.9 5.9E-21 1.3E-25 181.1 42.4 331 23-360 276-700 (1157)
19 PRK10049 pgaA outer membrane p 99.9 1.3E-19 2.9E-24 164.7 41.7 340 14-360 47-456 (765)
20 PRK10049 pgaA outer membrane p 99.9 1.4E-18 3E-23 158.1 41.4 346 14-367 13-427 (765)
21 KOG2076 RNA polymerase III tra 99.9 5E-17 1.1E-21 139.6 36.3 338 16-358 139-510 (895)
22 PRK14574 hmsH outer membrane p 99.9 2.3E-16 5E-21 141.5 41.4 158 200-358 301-477 (822)
23 PRK09782 bacteriophage N4 rece 99.8 2.6E-16 5.7E-21 144.0 39.0 320 30-360 356-706 (987)
24 PRK10747 putative protoheme IX 99.8 1.2E-16 2.5E-21 134.7 33.4 285 62-359 95-389 (398)
25 PRK09782 bacteriophage N4 rece 99.8 5.2E-16 1.1E-20 142.1 39.5 333 15-359 375-739 (987)
26 TIGR00540 hemY_coli hemY prote 99.8 7.8E-17 1.7E-21 136.4 32.0 296 60-359 93-398 (409)
27 PRK14574 hmsH outer membrane p 99.8 1.1E-15 2.3E-20 137.3 40.5 332 23-360 109-513 (822)
28 PF13429 TPR_15: Tetratricopep 99.8 1.3E-19 2.8E-24 146.0 13.7 262 21-289 13-276 (280)
29 KOG2002 TPR-containing nuclear 99.8 8.2E-17 1.8E-21 139.3 30.5 342 15-360 269-709 (1018)
30 KOG4422 Uncharacterized conser 99.8 1.9E-15 4.2E-20 119.7 34.7 344 13-362 204-592 (625)
31 PF13429 TPR_15: Tetratricopep 99.8 1E-19 2.2E-24 146.6 11.0 261 91-358 13-275 (280)
32 TIGR00540 hemY_coli hemY prote 99.8 2.5E-16 5.5E-21 133.3 32.0 301 19-324 85-398 (409)
33 KOG1126 DNA-binding cell divis 99.8 1.4E-17 3E-22 138.6 23.4 289 66-366 334-626 (638)
34 KOG1126 DNA-binding cell divis 99.8 2.8E-17 6E-22 136.8 24.4 292 30-331 333-626 (638)
35 KOG2003 TPR repeat-containing 99.8 1.9E-16 4.1E-21 126.4 27.4 350 17-375 277-703 (840)
36 PRK10747 putative protoheme IX 99.8 6E-16 1.3E-20 130.3 32.3 285 28-325 96-390 (398)
37 COG2956 Predicted N-acetylgluc 99.8 1.2E-15 2.7E-20 116.3 29.2 291 63-360 47-347 (389)
38 KOG2002 TPR-containing nuclear 99.8 5.5E-16 1.2E-20 134.3 30.4 348 19-372 345-757 (1018)
39 KOG1155 Anaphase-promoting com 99.8 8.6E-16 1.9E-20 122.7 29.0 291 24-322 235-533 (559)
40 KOG1155 Anaphase-promoting com 99.8 7.5E-15 1.6E-19 117.4 33.9 351 12-373 160-547 (559)
41 COG3071 HemY Uncharacterized e 99.8 3.5E-15 7.5E-20 117.2 30.6 292 63-364 96-394 (400)
42 KOG2076 RNA polymerase III tra 99.8 5.7E-15 1.2E-19 127.2 34.1 344 12-359 169-554 (895)
43 COG3071 HemY Uncharacterized e 99.8 1.3E-14 2.7E-19 114.1 30.5 299 22-330 88-395 (400)
44 KOG0547 Translocase of outer m 99.8 5.2E-15 1.1E-19 119.1 28.9 331 18-358 117-564 (606)
45 KOG0495 HAT repeat protein [RN 99.7 7.7E-14 1.7E-18 116.5 33.6 336 16-360 516-880 (913)
46 COG2956 Predicted N-acetylgluc 99.7 2.4E-14 5.2E-19 109.4 27.9 299 19-325 39-347 (389)
47 KOG4422 Uncharacterized conser 99.7 4.7E-14 1E-18 112.0 30.5 321 48-374 204-566 (625)
48 KOG0495 HAT repeat protein [RN 99.7 2.2E-13 4.7E-18 113.8 34.3 315 15-338 549-892 (913)
49 KOG2003 TPR repeat-containing 99.7 1.6E-14 3.4E-19 115.7 23.6 279 25-311 428-709 (840)
50 KOG1173 Anaphase-promoting com 99.7 4E-14 8.7E-19 116.1 26.2 284 50-341 243-532 (611)
51 KOG1129 TPR repeat-containing 99.7 7.7E-15 1.7E-19 112.3 19.9 230 125-360 227-458 (478)
52 PRK12370 invasion protein regu 99.7 9E-14 1.9E-18 122.4 29.0 269 48-325 253-535 (553)
53 KOG1129 TPR repeat-containing 99.7 5.2E-15 1.1E-19 113.2 17.6 231 54-290 226-458 (478)
54 PRK12370 invasion protein regu 99.7 1.4E-13 3.1E-18 121.1 28.9 267 85-361 255-536 (553)
55 TIGR02521 type_IV_pilW type IV 99.7 1.2E-13 2.6E-18 108.9 25.7 198 51-252 31-229 (234)
56 KOG1173 Anaphase-promoting com 99.7 2.5E-13 5.4E-18 111.5 27.0 282 85-374 243-530 (611)
57 KOG1915 Cell cycle control pro 99.7 1.7E-11 3.6E-16 99.1 34.9 341 12-361 170-537 (677)
58 TIGR02521 type_IV_pilW type IV 99.6 3.8E-13 8.2E-18 106.1 23.9 198 158-359 33-231 (234)
59 KOG0547 Translocase of outer m 99.6 3E-12 6.6E-17 103.5 28.3 219 100-324 340-565 (606)
60 PF12569 NARP1: NMDA receptor- 99.6 4.6E-11 9.9E-16 102.1 33.2 295 21-324 9-333 (517)
61 PF12569 NARP1: NMDA receptor- 99.6 1.9E-11 4E-16 104.4 30.5 299 52-359 5-333 (517)
62 KOG1840 Kinesin light chain [C 99.6 1.3E-12 2.9E-17 110.1 23.1 238 121-358 199-477 (508)
63 KOG1915 Cell cycle control pro 99.6 1.5E-10 3.3E-15 93.7 32.6 160 18-183 75-234 (677)
64 KOG3785 Uncharacterized conser 99.6 3.9E-11 8.5E-16 93.5 28.0 224 126-357 156-454 (557)
65 COG3063 PilF Tfp pilus assembl 99.6 1.8E-11 3.9E-16 89.6 23.7 199 52-254 36-235 (250)
66 COG3063 PilF Tfp pilus assembl 99.6 1.3E-11 2.8E-16 90.3 22.7 199 88-290 37-236 (250)
67 KOG1174 Anaphase-promoting com 99.5 8.4E-11 1.8E-15 93.4 28.3 292 27-326 207-501 (564)
68 PRK11189 lipoprotein NlpI; Pro 99.5 2.8E-11 6E-16 97.9 26.5 150 65-218 40-192 (296)
69 PRK11189 lipoprotein NlpI; Pro 99.5 2.7E-11 5.9E-16 98.0 26.3 220 29-257 39-267 (296)
70 KOG1174 Anaphase-promoting com 99.5 2.5E-11 5.4E-16 96.3 24.3 273 10-290 226-500 (564)
71 KOG4162 Predicted calmodulin-b 99.5 2.5E-10 5.5E-15 97.6 31.7 344 12-360 319-783 (799)
72 KOG1840 Kinesin light chain [C 99.5 9.4E-12 2E-16 105.0 23.1 236 88-323 201-477 (508)
73 KOG1156 N-terminal acetyltrans 99.5 1.6E-09 3.4E-14 91.2 32.5 98 263-362 373-470 (700)
74 KOG4340 Uncharacterized conser 99.5 1.6E-10 3.4E-15 88.1 24.2 296 17-322 11-336 (459)
75 cd05804 StaR_like StaR_like; a 99.5 1.7E-09 3.6E-14 91.0 32.3 198 17-219 7-214 (355)
76 KOG2376 Signal recognition par 99.5 7.6E-09 1.6E-13 86.3 34.6 342 21-373 17-499 (652)
77 cd05804 StaR_like StaR_like; a 99.5 2.3E-09 5.1E-14 90.1 32.7 309 48-360 3-336 (355)
78 KOG0624 dsRNA-activated protei 99.5 3.5E-09 7.7E-14 82.5 30.2 304 15-326 37-371 (504)
79 KOG2047 mRNA splicing factor [ 99.4 1.1E-08 2.5E-13 86.2 34.6 27 123-149 250-276 (835)
80 KOG2047 mRNA splicing factor [ 99.4 1.2E-08 2.5E-13 86.1 32.7 345 17-371 249-660 (835)
81 KOG1125 TPR repeat-containing 99.4 8.8E-11 1.9E-15 97.2 19.9 254 93-352 292-563 (579)
82 PF13041 PPR_2: PPR repeat fam 99.4 1E-12 2.2E-17 74.8 6.1 50 14-63 1-50 (50)
83 KOG4318 Bicoid mRNA stability 99.4 5.1E-11 1.1E-15 103.3 18.7 268 10-311 19-286 (1088)
84 KOG4318 Bicoid mRNA stability 99.4 9.5E-11 2.1E-15 101.7 20.3 274 37-346 11-286 (1088)
85 KOG0624 dsRNA-activated protei 99.4 8E-09 1.7E-13 80.6 28.0 305 48-361 35-371 (504)
86 KOG0548 Molecular co-chaperone 99.4 7.3E-09 1.6E-13 85.4 28.2 330 23-361 9-456 (539)
87 PF13041 PPR_2: PPR repeat fam 99.3 5.2E-12 1.1E-16 71.9 5.7 47 329-375 1-47 (50)
88 PF04733 Coatomer_E: Coatomer 99.3 6.4E-10 1.4E-14 88.7 19.3 251 24-290 9-265 (290)
89 PF04733 Coatomer_E: Coatomer 99.3 4.4E-10 9.4E-15 89.7 18.2 252 58-325 8-265 (290)
90 KOG1125 TPR repeat-containing 99.3 1.7E-09 3.7E-14 89.8 21.6 222 25-252 294-524 (579)
91 PRK04841 transcriptional regul 99.3 7.5E-08 1.6E-12 91.4 34.9 336 26-361 384-761 (903)
92 PLN02789 farnesyltranstransfer 99.3 2.1E-08 4.6E-13 81.1 25.6 215 18-238 39-267 (320)
93 KOG1156 N-terminal acetyltrans 99.2 4.3E-08 9.3E-13 82.8 27.0 307 18-334 10-326 (700)
94 KOG4162 Predicted calmodulin-b 99.2 1.1E-08 2.4E-13 88.0 23.4 289 32-325 460-783 (799)
95 KOG4340 Uncharacterized conser 99.2 1.6E-08 3.5E-13 77.4 21.7 294 53-356 12-335 (459)
96 KOG2376 Signal recognition par 99.2 4.2E-07 9.1E-12 76.2 31.5 335 13-358 43-518 (652)
97 PLN02789 farnesyltranstransfer 99.2 7.1E-08 1.5E-12 78.2 26.1 214 54-273 40-267 (320)
98 KOG1128 Uncharacterized conser 99.2 8.9E-09 1.9E-13 88.0 21.2 220 119-359 396-615 (777)
99 KOG1070 rRNA processing protei 99.2 4E-08 8.7E-13 89.9 25.4 234 85-323 1457-1698(1710)
100 KOG3785 Uncharacterized conser 99.2 4.3E-08 9.3E-13 77.0 22.4 327 14-361 119-491 (557)
101 KOG0548 Molecular co-chaperone 99.2 1.6E-07 3.5E-12 77.8 26.5 321 13-342 33-471 (539)
102 KOG1070 rRNA processing protei 99.2 4.8E-08 1E-12 89.4 24.9 251 102-358 1441-1698(1710)
103 TIGR03302 OM_YfiO outer membra 99.2 1.4E-08 3.1E-13 79.9 19.4 187 14-220 31-232 (235)
104 PRK04841 transcriptional regul 99.1 5.2E-07 1.1E-11 85.8 32.1 338 21-360 346-720 (903)
105 PRK14720 transcript cleavage f 99.1 1.2E-07 2.6E-12 85.7 25.3 242 12-307 27-268 (906)
106 KOG1128 Uncharacterized conser 99.1 1.5E-08 3.3E-13 86.7 18.1 221 13-254 395-615 (777)
107 PRK10370 formate-dependent nit 99.1 8.6E-08 1.9E-12 72.4 20.0 152 24-191 24-178 (198)
108 COG5010 TadD Flp pilus assembl 99.1 1E-07 2.2E-12 71.9 19.3 158 125-286 70-227 (257)
109 PRK14720 transcript cleavage f 99.1 1.7E-07 3.7E-12 84.7 24.2 241 48-342 28-268 (906)
110 TIGR03302 OM_YfiO outer membra 99.1 8.9E-08 1.9E-12 75.4 20.4 187 49-255 31-232 (235)
111 KOG1914 mRNA cleavage and poly 99.0 5.9E-06 1.3E-10 68.9 33.9 151 207-359 347-500 (656)
112 COG5010 TadD Flp pilus assembl 99.0 1.8E-07 3.9E-12 70.6 19.7 164 85-253 66-229 (257)
113 KOG3617 WD40 and TPR repeat-co 99.0 1.7E-07 3.7E-12 81.7 22.0 309 15-357 725-1106(1416)
114 PRK10370 formate-dependent nit 99.0 3.3E-08 7.2E-13 74.6 15.7 126 29-158 52-180 (198)
115 KOG3617 WD40 and TPR repeat-co 99.0 9E-07 2E-11 77.4 25.5 192 14-217 755-993 (1416)
116 KOG1127 TPR repeat-containing 99.0 1.5E-07 3.2E-12 83.6 20.6 165 17-184 493-658 (1238)
117 PRK15359 type III secretion sy 99.0 7.9E-08 1.7E-12 68.7 16.0 94 89-184 27-120 (144)
118 PRK15359 type III secretion sy 99.0 7.6E-08 1.7E-12 68.8 15.9 122 36-164 13-134 (144)
119 PRK15179 Vi polysaccharide bio 99.0 1.7E-07 3.6E-12 83.8 21.2 146 48-197 83-228 (694)
120 PRK15179 Vi polysaccharide bio 99.0 3.4E-07 7.3E-12 81.9 23.1 135 153-290 83-217 (694)
121 KOG3060 Uncharacterized conser 99.0 1.9E-06 4.1E-11 64.7 21.8 161 91-255 57-220 (289)
122 KOG3081 Vesicle coat complex C 98.9 1.1E-06 2.4E-11 66.5 20.4 235 24-275 16-255 (299)
123 KOG3081 Vesicle coat complex C 98.9 1.9E-06 4.2E-11 65.2 21.4 251 58-325 15-271 (299)
124 PF12854 PPR_1: PPR repeat 98.9 1.8E-09 4E-14 55.0 3.8 34 10-43 1-34 (34)
125 KOG1127 TPR repeat-containing 98.9 9.3E-07 2E-11 78.7 21.6 183 31-219 473-658 (1238)
126 KOG3060 Uncharacterized conser 98.9 3E-06 6.6E-11 63.7 21.0 189 134-326 25-221 (289)
127 COG4783 Putative Zn-dependent 98.8 1.2E-05 2.7E-10 66.4 25.1 144 196-360 311-454 (484)
128 TIGR02552 LcrH_SycD type III s 98.8 3.2E-07 6.9E-12 65.3 14.6 94 89-184 20-113 (135)
129 TIGR02552 LcrH_SycD type III s 98.8 3.4E-07 7.4E-12 65.1 14.3 111 38-151 5-115 (135)
130 KOG0985 Vesicle coat protein c 98.8 2.2E-05 4.8E-10 70.6 27.0 253 30-316 1089-1374(1666)
131 COG4783 Putative Zn-dependent 98.8 1.8E-05 3.8E-10 65.5 23.6 239 23-290 209-454 (484)
132 KOG3616 Selective LIM binding 98.8 1.7E-05 3.7E-10 69.0 24.3 108 164-284 740-847 (1636)
133 KOG0985 Vesicle coat protein c 98.7 8.3E-05 1.8E-09 67.2 28.5 183 156-358 1104-1306(1666)
134 PF09976 TPR_21: Tetratricopep 98.7 1.6E-06 3.4E-11 62.3 14.5 116 64-181 24-143 (145)
135 PF12854 PPR_1: PPR repeat 98.7 2.9E-08 6.3E-13 50.6 3.6 32 326-357 2-33 (34)
136 KOG3616 Selective LIM binding 98.7 2.5E-05 5.5E-10 68.0 22.9 171 127-322 738-908 (1636)
137 PF09976 TPR_21: Tetratricopep 98.7 2.7E-06 5.9E-11 61.1 14.6 127 17-147 13-144 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.9E-06 6.2E-11 70.4 16.2 127 52-184 170-296 (395)
139 KOG1914 mRNA cleavage and poly 98.6 0.00017 3.7E-09 60.6 31.3 356 13-374 17-480 (656)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.8E-06 6.1E-11 70.5 15.3 127 87-219 170-296 (395)
141 KOG0550 Molecular chaperone (D 98.6 3.3E-05 7.2E-10 62.5 20.4 265 20-290 53-350 (486)
142 KOG2053 Mitochondrial inherita 98.6 0.00036 7.8E-09 62.3 29.0 225 27-256 20-256 (932)
143 TIGR02795 tol_pal_ybgF tol-pal 98.5 1E-05 2.2E-10 56.0 13.1 99 17-115 3-105 (119)
144 PRK15363 pathogenicity island 98.5 4.6E-06 1E-10 58.7 10.9 99 50-150 34-132 (157)
145 KOG0550 Molecular chaperone (D 98.4 6.7E-05 1.5E-09 60.8 17.9 263 56-324 54-349 (486)
146 cd00189 TPR Tetratricopeptide 98.4 5.8E-06 1.3E-10 54.6 10.5 94 19-114 3-96 (100)
147 PRK15363 pathogenicity island 98.4 1.6E-05 3.4E-10 56.1 12.6 98 86-185 35-132 (157)
148 KOG1130 Predicted G-alpha GTPa 98.4 4.1E-06 8.8E-11 67.6 10.7 132 192-323 196-342 (639)
149 PF14938 SNAP: Soluble NSF att 98.4 2.3E-05 5E-10 63.3 14.8 141 228-373 116-275 (282)
150 TIGR02795 tol_pal_ybgF tol-pal 98.4 2.8E-05 6.1E-10 53.8 13.4 98 53-150 4-105 (119)
151 KOG1130 Predicted G-alpha GTPa 98.4 5E-06 1.1E-10 67.1 10.5 278 11-289 10-343 (639)
152 PRK10866 outer membrane biogen 98.4 0.00023 5E-09 55.8 19.5 183 50-252 31-238 (243)
153 PRK10866 outer membrane biogen 98.4 0.00035 7.6E-09 54.8 20.3 58 301-358 180-239 (243)
154 PF12895 Apc3: Anaphase-promot 98.3 1.3E-06 2.9E-11 56.0 5.4 81 29-111 2-83 (84)
155 PF12895 Apc3: Anaphase-promot 98.3 2.1E-06 4.5E-11 55.1 6.3 20 267-286 31-50 (84)
156 PLN03088 SGT1, suppressor of 98.3 2.5E-05 5.4E-10 65.2 14.1 93 22-116 8-100 (356)
157 TIGR00756 PPR pentatricopeptid 98.3 1.1E-06 2.4E-11 45.5 4.0 33 18-50 2-34 (35)
158 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.9E-11 45.2 4.1 33 333-365 2-34 (35)
159 PF13812 PPR_3: Pentatricopept 98.3 1.4E-06 3E-11 44.8 3.9 33 17-49 2-34 (34)
160 PLN03088 SGT1, suppressor of 98.3 4.2E-05 9.1E-10 63.8 14.5 93 57-151 8-100 (356)
161 KOG2053 Mitochondrial inherita 98.3 0.0026 5.7E-08 57.1 32.7 199 19-221 44-256 (932)
162 cd00189 TPR Tetratricopeptide 98.3 2.5E-05 5.4E-10 51.5 11.1 87 93-181 7-93 (100)
163 PF12688 TPR_5: Tetratrico pep 98.3 8.8E-05 1.9E-09 50.5 13.2 108 229-341 4-116 (120)
164 PF14938 SNAP: Soluble NSF att 98.3 0.00037 8.1E-09 56.3 19.1 126 163-289 121-265 (282)
165 CHL00033 ycf3 photosystem I as 98.3 4.1E-05 8.8E-10 56.7 12.6 100 32-132 15-117 (168)
166 PF05843 Suf: Suppressor of fo 98.2 6.3E-05 1.4E-09 60.5 14.0 131 17-150 2-136 (280)
167 PRK02603 photosystem I assembl 98.2 0.00014 3.1E-09 54.0 14.9 93 50-143 34-128 (172)
168 CHL00033 ycf3 photosystem I as 98.2 5.4E-05 1.2E-09 56.0 12.6 95 86-181 35-138 (168)
169 PF13812 PPR_3: Pentatricopept 98.2 2.8E-06 6.1E-11 43.6 4.1 33 332-364 2-34 (34)
170 KOG0553 TPR repeat-containing 98.2 3.4E-05 7.3E-10 59.9 11.4 90 60-151 90-179 (304)
171 KOG0553 TPR repeat-containing 98.2 3.2E-05 6.8E-10 60.0 11.1 98 95-196 90-187 (304)
172 PRK02603 photosystem I assembl 98.2 0.00014 3E-09 54.0 14.3 91 86-177 35-127 (172)
173 PF13414 TPR_11: TPR repeat; P 98.2 7.2E-06 1.6E-10 50.3 6.3 64 15-79 2-66 (69)
174 PRK10153 DNA-binding transcrip 98.2 0.0002 4.4E-09 62.5 16.7 142 48-194 334-489 (517)
175 PF08579 RPM2: Mitochondrial r 98.2 5.3E-05 1.1E-09 49.6 9.8 77 21-97 30-115 (120)
176 PF05843 Suf: Suppressor of fo 98.2 4.5E-05 9.7E-10 61.4 11.6 145 192-341 2-150 (280)
177 PF10037 MRP-S27: Mitochondria 98.1 6.1E-05 1.3E-09 63.1 12.4 123 187-309 62-186 (429)
178 PRK10153 DNA-binding transcrip 98.1 0.00037 8.1E-09 60.9 17.4 137 81-221 332-483 (517)
179 PF10037 MRP-S27: Mitochondria 98.1 0.00012 2.6E-09 61.4 13.5 122 83-204 63-186 (429)
180 PF13525 YfiO: Outer membrane 98.1 0.00072 1.6E-08 51.6 16.7 64 17-80 6-71 (203)
181 COG3898 Uncharacterized membra 98.1 0.0034 7.4E-08 51.0 29.5 297 54-365 85-397 (531)
182 PF13432 TPR_16: Tetratricopep 98.1 2.2E-05 4.7E-10 47.4 6.7 58 22-80 3-60 (65)
183 COG4235 Cytochrome c biogenesi 98.1 0.00049 1.1E-08 53.9 15.3 110 73-185 144-256 (287)
184 PF12688 TPR_5: Tetratrico pep 98.1 0.00041 8.9E-09 47.3 13.3 90 162-251 7-100 (120)
185 PF14559 TPR_19: Tetratricopep 98.1 1.3E-05 2.9E-10 49.0 5.6 53 27-80 2-54 (68)
186 COG4235 Cytochrome c biogenesi 98.1 0.0005 1.1E-08 53.9 15.1 111 108-221 144-257 (287)
187 PF13525 YfiO: Outer membrane 98.1 0.0018 4E-08 49.4 18.2 65 51-115 5-71 (203)
188 PF13414 TPR_11: TPR repeat; P 98.0 3.6E-05 7.7E-10 47.2 7.0 63 121-184 3-66 (69)
189 COG4700 Uncharacterized protei 98.0 0.0023 5E-08 46.3 18.3 126 83-210 86-212 (251)
190 PF08579 RPM2: Mitochondrial r 98.0 8.3E-05 1.8E-09 48.7 8.3 76 301-376 30-114 (120)
191 PF01535 PPR: PPR repeat; Int 98.0 9.4E-06 2E-10 40.5 3.3 29 18-46 2-30 (31)
192 KOG2796 Uncharacterized conser 98.0 0.0013 2.8E-08 50.4 15.5 178 27-220 133-315 (366)
193 KOG2041 WD40 repeat protein [G 98.0 0.005 1.1E-07 54.0 20.3 241 48-324 689-951 (1189)
194 KOG1538 Uncharacterized conser 98.0 0.0025 5.4E-08 55.2 18.3 88 226-324 747-845 (1081)
195 PF13432 TPR_16: Tetratricopep 97.9 6.3E-05 1.4E-09 45.4 6.9 56 128-184 4-59 (65)
196 PF01535 PPR: PPR repeat; Int 97.9 2E-05 4.3E-10 39.3 3.4 30 333-362 2-31 (31)
197 COG4700 Uncharacterized protei 97.8 0.0051 1.1E-07 44.6 18.6 134 117-252 85-219 (251)
198 PRK10803 tol-pal system protei 97.8 0.00066 1.4E-08 53.7 12.6 88 272-360 154-246 (263)
199 PF14559 TPR_19: Tetratricopep 97.8 0.0001 2.2E-09 45.0 6.4 50 134-184 4-53 (68)
200 PRK15331 chaperone protein Sic 97.8 0.0049 1.1E-07 44.1 15.1 91 92-184 43-133 (165)
201 PRK10803 tol-pal system protei 97.8 0.00067 1.4E-08 53.7 12.2 96 19-115 146-246 (263)
202 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.016 3.5E-07 48.3 26.3 201 153-360 299-531 (660)
203 PF03704 BTAD: Bacterial trans 97.8 0.0013 2.8E-08 47.3 12.3 74 298-372 64-142 (146)
204 PRK15331 chaperone protein Sic 97.8 0.0016 3.6E-08 46.4 12.1 93 231-325 42-134 (165)
205 PF13371 TPR_9: Tetratricopept 97.8 0.00023 5E-09 44.1 7.3 57 24-81 3-59 (73)
206 COG3898 Uncharacterized membra 97.7 0.017 3.8E-07 47.2 27.7 290 18-325 84-392 (531)
207 PF13281 DUF4071: Domain of un 97.7 0.021 4.7E-07 47.2 19.1 82 121-202 141-228 (374)
208 PF13281 DUF4071: Domain of un 97.6 0.021 4.5E-07 47.3 18.6 100 86-185 141-255 (374)
209 PF13371 TPR_9: Tetratricopept 97.6 0.00069 1.5E-08 41.9 7.8 54 130-184 4-57 (73)
210 PF03704 BTAD: Bacterial trans 97.5 0.00098 2.1E-08 48.0 9.0 72 52-124 63-139 (146)
211 KOG1585 Protein required for f 97.5 0.023 4.9E-07 43.4 17.8 25 124-148 34-58 (308)
212 PF13424 TPR_12: Tetratricopep 97.5 0.00041 8.9E-09 43.6 6.1 62 297-358 6-73 (78)
213 PF06239 ECSIT: Evolutionarily 97.5 0.0035 7.6E-08 46.9 11.5 86 260-345 46-152 (228)
214 PF07079 DUF1347: Protein of u 97.5 0.043 9.3E-07 45.9 28.9 59 306-371 472-530 (549)
215 PF13424 TPR_12: Tetratricopep 97.5 0.00033 7E-09 44.1 4.9 61 18-78 7-73 (78)
216 KOG2280 Vacuolar assembly/sort 97.4 0.086 1.9E-06 47.0 26.9 325 9-355 425-794 (829)
217 KOG2041 WD40 repeat protein [G 97.4 0.09 1.9E-06 46.7 25.1 309 12-345 688-1071(1189)
218 PF06239 ECSIT: Evolutionarily 97.4 0.0059 1.3E-07 45.7 11.0 84 120-203 46-150 (228)
219 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0042 9.1E-08 52.1 11.3 67 13-80 72-141 (453)
220 KOG0543 FKBP-type peptidyl-pro 97.3 0.0079 1.7E-07 49.3 12.1 92 58-150 215-320 (397)
221 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.08 1.7E-06 44.4 27.6 339 11-359 37-494 (660)
222 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.016 3.4E-07 48.8 13.6 64 85-150 74-141 (453)
223 KOG0543 FKBP-type peptidyl-pro 97.2 0.0084 1.8E-07 49.2 11.6 95 228-324 259-354 (397)
224 COG1729 Uncharacterized protei 97.2 0.0091 2E-07 46.4 11.2 96 263-360 144-244 (262)
225 PF04840 Vps16_C: Vps16, C-ter 97.2 0.09 1.9E-06 43.2 27.3 281 18-353 2-284 (319)
226 KOG1258 mRNA processing protei 97.2 0.13 2.7E-06 44.8 25.9 331 16-351 45-420 (577)
227 KOG2610 Uncharacterized conser 97.2 0.016 3.4E-07 46.4 12.3 113 135-250 117-233 (491)
228 KOG1941 Acetylcholine receptor 97.2 0.016 3.4E-07 46.9 12.4 228 26-253 16-273 (518)
229 PF13512 TPR_18: Tetratricopep 97.2 0.018 3.9E-07 40.3 11.3 81 18-98 12-94 (142)
230 COG1729 Uncharacterized protei 97.2 0.025 5.4E-07 44.1 13.2 97 18-115 144-244 (262)
231 COG3118 Thioredoxin domain-con 97.2 0.075 1.6E-06 42.0 16.6 142 96-240 144-286 (304)
232 COG4105 ComL DNA uptake lipopr 97.2 0.074 1.6E-06 41.2 20.1 55 162-217 173-230 (254)
233 PF10300 DUF3808: Protein of u 97.1 0.056 1.2E-06 47.2 16.5 178 175-358 176-374 (468)
234 PRK11906 transcriptional regul 97.1 0.061 1.3E-06 45.6 15.8 149 206-358 273-434 (458)
235 PRK11906 transcriptional regul 97.1 0.077 1.7E-06 45.0 16.2 118 66-185 273-401 (458)
236 KOG2796 Uncharacterized conser 97.1 0.085 1.8E-06 40.9 22.5 132 158-290 179-315 (366)
237 KOG1585 Protein required for f 97.1 0.085 1.8E-06 40.4 17.6 207 51-284 31-250 (308)
238 PF12921 ATP13: Mitochondrial 97.1 0.012 2.6E-07 40.7 9.5 84 260-343 1-100 (126)
239 PF10300 DUF3808: Protein of u 97.1 0.092 2E-06 45.9 17.0 177 36-219 177-375 (468)
240 PF13428 TPR_14: Tetratricopep 97.0 0.0023 5.1E-08 34.8 4.4 39 18-57 3-41 (44)
241 COG4105 ComL DNA uptake lipopr 97.0 0.12 2.6E-06 40.1 19.3 62 54-115 37-100 (254)
242 KOG1941 Acetylcholine receptor 96.9 0.053 1.2E-06 44.0 12.8 230 60-289 15-274 (518)
243 PF04053 Coatomer_WDAD: Coatom 96.9 0.098 2.1E-06 45.1 15.2 156 166-357 271-428 (443)
244 KOG1538 Uncharacterized conser 96.9 0.3 6.5E-06 43.2 20.3 251 13-286 553-829 (1081)
245 COG3118 Thioredoxin domain-con 96.8 0.17 3.6E-06 40.2 17.6 150 198-350 141-291 (304)
246 PF12921 ATP13: Mitochondrial 96.8 0.043 9.4E-07 37.9 10.5 86 225-310 1-102 (126)
247 KOG2610 Uncharacterized conser 96.8 0.059 1.3E-06 43.3 12.3 154 61-217 113-273 (491)
248 KOG4555 TPR repeat-containing 96.8 0.075 1.6E-06 36.3 11.0 53 26-79 53-105 (175)
249 PF13428 TPR_14: Tetratricopep 96.7 0.006 1.3E-07 33.2 4.7 38 53-91 3-40 (44)
250 PF07079 DUF1347: Protein of u 96.7 0.31 6.7E-06 41.1 28.6 88 242-336 437-530 (549)
251 PF08631 SPO22: Meiosis protei 96.7 0.26 5.5E-06 40.0 23.9 62 123-185 86-150 (278)
252 PF04053 Coatomer_WDAD: Coatom 96.6 0.094 2E-06 45.2 13.4 154 26-215 271-426 (443)
253 KOG4555 TPR repeat-containing 96.6 0.088 1.9E-06 35.9 10.3 93 58-151 50-145 (175)
254 COG0457 NrfG FOG: TPR repeat [ 96.6 0.26 5.7E-06 38.5 27.1 202 122-325 60-265 (291)
255 PF08631 SPO22: Meiosis protei 96.5 0.35 7.6E-06 39.2 24.9 165 26-192 3-193 (278)
256 PF09205 DUF1955: Domain of un 96.5 0.15 3.3E-06 35.0 13.6 66 296-362 86-151 (161)
257 COG0457 NrfG FOG: TPR repeat [ 96.4 0.31 6.6E-06 38.1 27.7 224 134-360 36-265 (291)
258 COG4785 NlpI Lipoprotein NlpI, 96.4 0.26 5.7E-06 37.1 18.4 181 134-327 78-268 (297)
259 KOG1550 Extracellular protein 96.4 0.7 1.5E-05 41.6 26.7 175 32-220 228-426 (552)
260 PF04184 ST7: ST7 protein; In 96.4 0.57 1.2E-05 40.2 17.0 148 162-324 174-323 (539)
261 KOG1258 mRNA processing protei 96.2 0.81 1.8E-05 40.2 27.1 294 20-317 83-421 (577)
262 COG3629 DnrI DNA-binding trans 96.1 0.094 2E-06 41.7 9.6 79 51-130 153-236 (280)
263 PF04184 ST7: ST7 protein; In 96.0 0.86 1.9E-05 39.2 18.4 63 122-184 260-323 (539)
264 COG3629 DnrI DNA-binding trans 96.0 0.11 2.5E-06 41.2 9.8 79 261-340 153-236 (280)
265 COG4649 Uncharacterized protei 95.9 0.42 9E-06 34.7 13.5 124 62-185 69-196 (221)
266 PF10602 RPN7: 26S proteasome 95.8 0.21 4.6E-06 37.1 10.2 98 51-148 36-140 (177)
267 KOG1920 IkappaB kinase complex 95.7 2.1 4.6E-05 41.1 19.0 81 232-324 945-1027(1265)
268 PF09613 HrpB1_HrpK: Bacterial 95.7 0.51 1.1E-05 33.9 12.1 54 26-80 20-73 (160)
269 PF13431 TPR_17: Tetratricopep 95.7 0.012 2.5E-07 29.8 2.3 30 41-71 4-33 (34)
270 KOG0890 Protein kinase of the 95.7 3.2 6.9E-05 43.1 24.5 321 21-360 1388-1731(2382)
271 COG4785 NlpI Lipoprotein NlpI, 95.7 0.67 1.4E-05 35.1 16.2 28 262-289 238-265 (297)
272 PF10602 RPN7: 26S proteasome 95.6 0.26 5.7E-06 36.6 10.1 63 87-149 37-101 (177)
273 PF13431 TPR_17: Tetratricopep 95.6 0.014 3E-07 29.5 2.4 31 145-176 3-33 (34)
274 smart00299 CLH Clathrin heavy 95.6 0.51 1.1E-05 33.5 15.5 44 20-64 11-54 (140)
275 PRK15180 Vi polysaccharide bio 95.5 1.4 3E-05 37.8 14.7 130 19-151 292-421 (831)
276 smart00299 CLH Clathrin heavy 95.5 0.59 1.3E-05 33.2 15.6 40 128-168 14-53 (140)
277 COG4649 Uncharacterized protei 95.5 0.66 1.4E-05 33.7 13.7 122 203-324 70-195 (221)
278 PF13176 TPR_7: Tetratricopept 95.4 0.035 7.5E-07 28.5 3.5 23 19-41 2-24 (36)
279 PF13176 TPR_7: Tetratricopept 95.4 0.043 9.3E-07 28.2 3.8 25 159-183 2-26 (36)
280 PF04840 Vps16_C: Vps16, C-ter 95.3 1.4 3.1E-05 36.4 25.6 108 194-321 180-287 (319)
281 PF09205 DUF1955: Domain of un 95.3 0.61 1.3E-05 32.1 13.5 65 262-327 87-151 (161)
282 KOG3941 Intermediate in Toll s 95.2 0.25 5.4E-06 38.9 8.7 94 260-356 66-180 (406)
283 PF09613 HrpB1_HrpK: Bacterial 95.1 0.86 1.9E-05 32.8 12.3 53 237-290 21-73 (160)
284 COG2976 Uncharacterized protei 95.0 1 2.2E-05 33.5 14.1 93 232-326 95-189 (207)
285 PF13512 TPR_18: Tetratricopep 95.0 0.8 1.7E-05 32.3 13.8 57 128-184 17-75 (142)
286 KOG2280 Vacuolar assembly/sort 95.0 2.7 5.8E-05 38.2 24.2 303 44-358 425-771 (829)
287 KOG1550 Extracellular protein 94.8 3 6.5E-05 37.8 27.1 272 67-361 228-539 (552)
288 KOG2114 Vacuolar assembly/sort 94.7 1.5 3.4E-05 40.2 13.4 119 54-182 337-457 (933)
289 KOG4234 TPR repeat-containing 94.7 1.2 2.5E-05 33.4 10.6 91 164-256 103-198 (271)
290 PF00515 TPR_1: Tetratricopept 94.5 0.1 2.3E-06 26.1 3.9 27 298-324 3-29 (34)
291 TIGR03504 FimV_Cterm FimV C-te 94.5 0.091 2E-06 28.3 3.6 23 302-324 5-27 (44)
292 PF11207 DUF2989: Protein of u 94.4 0.63 1.4E-05 34.9 9.0 79 61-141 117-198 (203)
293 KOG3941 Intermediate in Toll s 94.4 0.56 1.2E-05 37.0 8.9 69 68-136 89-173 (406)
294 KOG4234 TPR repeat-containing 94.4 0.89 1.9E-05 34.0 9.4 91 60-151 104-198 (271)
295 PF00515 TPR_1: Tetratricopept 94.3 0.14 3E-06 25.7 4.1 26 54-79 4-29 (34)
296 PF07719 TPR_2: Tetratricopept 94.3 0.12 2.7E-06 25.8 3.9 27 298-324 3-29 (34)
297 KOG2114 Vacuolar assembly/sort 94.3 4.4 9.6E-05 37.5 16.8 252 89-367 337-595 (933)
298 KOG4648 Uncharacterized conser 94.2 0.21 4.5E-06 40.4 6.6 90 24-115 105-194 (536)
299 COG2976 Uncharacterized protei 94.2 1.7 3.7E-05 32.4 14.1 56 128-185 133-188 (207)
300 KOG2471 TPR repeat-containing 94.2 3.4 7.3E-05 35.7 16.3 109 234-343 248-381 (696)
301 PF10345 Cohesin_load: Cohesin 94.2 4.6 9.9E-05 37.2 28.6 66 306-371 371-452 (608)
302 PF02259 FAT: FAT domain; Int 94.1 3.1 6.8E-05 35.0 24.1 66 189-254 144-212 (352)
303 PF07575 Nucleopor_Nup85: Nup8 94.1 4.6 9.9E-05 36.8 17.2 32 343-374 507-538 (566)
304 PF02259 FAT: FAT domain; Int 93.8 3.5 7.7E-05 34.7 23.5 193 22-220 4-213 (352)
305 TIGR02561 HrpB1_HrpK type III 93.7 1.7 3.7E-05 30.8 11.0 53 27-80 21-73 (153)
306 PF07719 TPR_2: Tetratricopept 93.7 0.21 4.5E-06 24.9 4.1 26 54-79 4-29 (34)
307 PF02284 COX5A: Cytochrome c o 93.7 1.3 2.7E-05 29.0 8.7 44 316-359 30-73 (108)
308 PF07035 Mic1: Colon cancer-as 93.6 2.1 4.5E-05 31.3 15.2 100 73-182 16-115 (167)
309 PF13170 DUF4003: Protein of u 93.4 3.7 8.1E-05 33.6 20.3 137 173-311 79-232 (297)
310 COG4455 ImpE Protein of avirul 93.2 0.99 2.1E-05 34.3 8.0 77 18-95 3-81 (273)
311 PF11207 DUF2989: Protein of u 93.1 2 4.3E-05 32.3 9.6 73 278-351 123-198 (203)
312 KOG4648 Uncharacterized conser 93.0 1 2.2E-05 36.7 8.5 90 93-184 104-193 (536)
313 KOG4570 Uncharacterized conser 92.9 2.6 5.6E-05 34.1 10.3 104 46-151 59-165 (418)
314 PF06552 TOM20_plant: Plant sp 92.8 1.2 2.7E-05 32.7 8.0 31 32-63 7-37 (186)
315 PF13170 DUF4003: Protein of u 92.8 4.6 0.0001 33.0 21.0 133 102-236 78-227 (297)
316 PRK11619 lytic murein transgly 92.8 8 0.00017 35.7 29.6 250 92-358 105-373 (644)
317 PF13374 TPR_10: Tetratricopep 92.7 0.32 7E-06 25.6 4.0 26 53-78 4-29 (42)
318 PF06552 TOM20_plant: Plant sp 92.4 2.6 5.6E-05 31.1 9.1 41 172-220 96-136 (186)
319 PF13374 TPR_10: Tetratricopep 92.4 0.39 8.5E-06 25.3 4.1 26 298-323 4-29 (42)
320 KOG1920 IkappaB kinase complex 92.4 11 0.00025 36.5 21.9 56 232-288 971-1026(1265)
321 KOG2396 HAT (Half-A-TPR) repea 92.3 7.2 0.00016 33.9 28.4 92 265-359 464-558 (568)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 92.2 2.1 4.6E-05 27.7 8.6 44 315-358 26-69 (103)
323 PRK15180 Vi polysaccharide bio 92.2 7.1 0.00015 33.8 12.7 121 62-185 300-420 (831)
324 PF07163 Pex26: Pex26 protein; 91.9 5.5 0.00012 31.7 12.7 125 20-144 39-181 (309)
325 KOG4642 Chaperone-dependent E3 91.8 3.3 7.2E-05 32.1 9.4 85 201-287 20-104 (284)
326 COG1747 Uncharacterized N-term 91.8 8.4 0.00018 33.7 20.5 178 15-200 65-248 (711)
327 COG2909 MalT ATP-dependent tra 91.6 12 0.00026 35.1 25.4 227 95-321 424-684 (894)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 91.3 2.3 5E-05 27.5 6.9 38 109-146 30-67 (103)
329 PF13181 TPR_8: Tetratricopept 91.3 0.66 1.4E-05 23.0 4.0 27 53-79 3-29 (34)
330 PF13181 TPR_8: Tetratricopept 91.3 0.7 1.5E-05 22.9 4.1 27 298-324 3-29 (34)
331 COG2909 MalT ATP-dependent tra 91.2 13 0.00029 34.9 27.5 225 129-356 423-684 (894)
332 PF13174 TPR_6: Tetratricopept 91.2 0.35 7.6E-06 23.8 2.9 23 57-79 6-28 (33)
333 PF02284 COX5A: Cytochrome c o 91.2 2 4.3E-05 28.2 6.6 40 108-147 32-71 (108)
334 TIGR02561 HrpB1_HrpK type III 91.2 4.1 8.9E-05 29.0 11.3 51 239-290 23-73 (153)
335 TIGR03504 FimV_Cterm FimV C-te 91.0 0.77 1.7E-05 24.8 4.1 28 337-364 5-32 (44)
336 COG0790 FOG: TPR repeat, SEL1 90.9 7.8 0.00017 31.7 19.8 83 133-221 53-143 (292)
337 KOG0276 Vesicle coat complex C 90.7 11 0.00024 33.8 12.5 163 15-217 580-747 (794)
338 PF13174 TPR_6: Tetratricopept 90.6 0.49 1.1E-05 23.2 3.1 23 302-324 6-28 (33)
339 PF07721 TPR_4: Tetratricopept 90.4 0.61 1.3E-05 21.7 3.1 16 268-283 8-23 (26)
340 KOG2066 Vacuolar assembly/sort 90.3 15 0.00033 34.0 23.5 150 23-184 363-533 (846)
341 KOG4507 Uncharacterized conser 90.1 2.4 5.3E-05 37.4 8.3 88 97-185 618-705 (886)
342 PF00637 Clathrin: Region in C 90.0 0.15 3.3E-06 36.4 1.2 52 23-74 14-65 (143)
343 KOG4507 Uncharacterized conser 89.9 1.6 3.6E-05 38.4 7.1 102 224-326 605-706 (886)
344 KOG1308 Hsp70-interacting prot 89.4 0.33 7.1E-06 39.4 2.6 87 63-152 126-213 (377)
345 KOG0276 Vesicle coat complex C 89.4 8.1 0.00018 34.5 10.8 99 202-321 648-746 (794)
346 PRK09687 putative lyase; Provi 88.9 11 0.00024 30.6 27.0 235 48-307 34-278 (280)
347 PF00637 Clathrin: Region in C 88.6 0.28 6.1E-06 35.0 1.7 84 57-147 13-96 (143)
348 COG4455 ImpE Protein of avirul 88.5 6.9 0.00015 30.0 8.6 59 91-150 6-64 (273)
349 PF07035 Mic1: Colon cancer-as 88.2 8.5 0.00018 28.3 15.3 135 36-184 14-148 (167)
350 PF04097 Nic96: Nup93/Nic96; 88.1 22 0.00047 32.9 20.8 155 162-324 264-442 (613)
351 KOG4077 Cytochrome c oxidase, 88.1 3.7 8.1E-05 28.1 6.4 46 279-324 67-112 (149)
352 PRK11619 lytic murein transgly 88.0 23 0.00049 33.0 32.2 115 135-252 255-372 (644)
353 KOG1586 Protein required for f 87.9 11 0.00024 29.3 18.8 14 99-112 27-40 (288)
354 KOG0890 Protein kinase of the 87.8 42 0.00091 35.8 23.8 288 19-325 1423-1731(2382)
355 COG1747 Uncharacterized N-term 87.7 19 0.0004 31.7 23.6 61 157-220 67-127 (711)
356 KOG4570 Uncharacterized conser 87.3 15 0.00032 30.1 12.3 48 276-323 115-162 (418)
357 PF10345 Cohesin_load: Cohesin 87.3 24 0.00053 32.6 31.0 168 15-183 58-252 (608)
358 COG3947 Response regulator con 87.3 14 0.00031 29.8 15.2 59 159-218 282-340 (361)
359 COG3947 Response regulator con 86.7 15 0.00033 29.6 16.9 72 298-370 281-357 (361)
360 KOG4642 Chaperone-dependent E3 86.6 14 0.00029 28.9 11.1 79 65-147 24-104 (284)
361 PF08424 NRDE-2: NRDE-2, neces 86.5 18 0.00038 30.2 16.3 82 48-131 16-109 (321)
362 KOG1464 COP9 signalosome, subu 86.5 15 0.00032 29.3 18.3 50 29-78 40-92 (440)
363 PRK12798 chemotaxis protein; R 85.6 22 0.00048 30.4 20.9 152 133-289 124-285 (421)
364 PRK09687 putative lyase; Provi 85.5 18 0.0004 29.4 25.9 58 295-359 205-262 (280)
365 PF08424 NRDE-2: NRDE-2, neces 85.3 21 0.00044 29.9 17.2 135 85-221 18-184 (321)
366 smart00028 TPR Tetratricopepti 84.9 1.9 4.1E-05 20.3 3.3 22 56-77 6-27 (34)
367 PF11848 DUF3368: Domain of un 84.9 4.1 8.8E-05 22.5 4.6 34 341-374 12-45 (48)
368 COG0790 FOG: TPR repeat, SEL1 84.9 20 0.00043 29.3 23.4 25 241-265 252-276 (292)
369 PRK10941 hypothetical protein; 84.6 15 0.00032 29.7 9.3 60 265-325 185-244 (269)
370 KOG1464 COP9 signalosome, subu 84.3 19 0.00042 28.7 17.5 203 81-284 21-254 (440)
371 PRK10941 hypothetical protein; 83.5 22 0.00048 28.7 10.1 76 54-130 184-260 (269)
372 PF10579 Rapsyn_N: Rapsyn N-te 83.4 5.7 0.00012 24.7 5.1 46 308-353 18-65 (80)
373 PF13929 mRNA_stabil: mRNA sta 83.1 23 0.0005 28.7 13.3 185 13-200 86-287 (292)
374 PF09670 Cas_Cas02710: CRISPR- 82.9 17 0.00038 31.1 9.7 57 23-80 138-198 (379)
375 PF14689 SPOB_a: Sensor_kinase 82.7 5.5 0.00012 23.5 4.8 30 330-359 22-51 (62)
376 COG4259 Uncharacterized protei 82.7 11 0.00024 24.6 6.9 59 137-197 53-111 (121)
377 KOG3364 Membrane protein invol 82.2 15 0.00032 25.8 7.5 68 258-325 29-100 (149)
378 PF04190 DUF410: Protein of un 82.2 24 0.00053 28.3 16.8 28 259-286 88-115 (260)
379 KOG3364 Membrane protein invol 82.2 15 0.00032 25.8 8.5 67 49-115 30-100 (149)
380 PF07163 Pex26: Pex26 protein; 82.1 25 0.00054 28.3 12.8 21 59-79 43-63 (309)
381 KOG0686 COP9 signalosome, subu 80.9 34 0.00075 29.2 14.1 62 53-114 152-215 (466)
382 KOG1586 Protein required for f 80.7 25 0.00054 27.5 20.3 54 135-188 128-186 (288)
383 KOG0545 Aryl-hydrocarbon recep 80.2 25 0.00055 27.7 8.6 62 263-325 232-293 (329)
384 KOG1308 Hsp70-interacting prot 80.2 1.8 4E-05 35.3 2.9 119 236-359 124-243 (377)
385 KOG0376 Serine-threonine phosp 80.1 5.9 0.00013 34.2 5.8 106 21-130 9-114 (476)
386 PF12862 Apc5: Anaphase-promot 80.1 12 0.00027 24.2 6.4 54 26-79 8-69 (94)
387 PF14561 TPR_20: Tetratricopep 79.8 14 0.0003 23.9 8.1 33 48-80 19-51 (90)
388 PF10255 Paf67: RNA polymerase 79.6 40 0.00086 29.1 13.0 62 123-184 124-192 (404)
389 PF12862 Apc5: Anaphase-promot 79.4 14 0.00031 23.9 6.6 23 337-359 47-69 (94)
390 KOG0376 Serine-threonine phosp 79.2 8.2 0.00018 33.3 6.4 102 58-164 11-113 (476)
391 PF04910 Tcf25: Transcriptiona 79.0 40 0.00086 28.7 17.1 31 188-218 37-67 (360)
392 PF10579 Rapsyn_N: Rapsyn N-te 78.7 8.4 0.00018 24.0 4.7 17 63-79 18-34 (80)
393 PF09986 DUF2225: Uncharacteri 78.5 29 0.00063 26.9 9.9 27 299-325 168-194 (214)
394 PRK10564 maltose regulon perip 78.4 5.7 0.00012 32.1 5.0 36 14-49 254-290 (303)
395 KOG2471 TPR repeat-containing 78.3 47 0.001 29.2 19.8 109 93-202 247-380 (696)
396 KOG4077 Cytochrome c oxidase, 78.3 20 0.00042 24.8 6.8 31 152-182 80-110 (149)
397 PF14689 SPOB_a: Sensor_kinase 77.9 5.3 0.00012 23.5 3.7 23 91-113 28-50 (62)
398 COG0735 Fur Fe2+/Zn2+ uptake r 76.8 23 0.0005 25.4 7.4 61 39-100 9-69 (145)
399 TIGR02508 type_III_yscG type I 76.8 19 0.0004 23.8 8.2 52 59-116 47-98 (115)
400 KOG3807 Predicted membrane pro 76.0 44 0.00095 27.7 9.3 55 23-80 191-245 (556)
401 PF13929 mRNA_stabil: mRNA sta 76.0 41 0.00089 27.3 16.7 116 171-286 143-263 (292)
402 PF00244 14-3-3: 14-3-3 protei 75.2 39 0.00085 26.7 11.0 57 21-77 6-63 (236)
403 PF11846 DUF3366: Domain of un 75.1 20 0.00044 27.1 7.3 32 293-324 141-172 (193)
404 cd00280 TRFH Telomeric Repeat 73.8 21 0.00045 26.7 6.4 19 270-288 120-138 (200)
405 KOG0545 Aryl-hydrocarbon recep 73.7 43 0.00093 26.5 9.6 62 193-255 232-293 (329)
406 KOG0686 COP9 signalosome, subu 72.9 60 0.0013 27.8 14.1 64 17-80 151-216 (466)
407 KOG4521 Nuclear pore complex, 72.7 1.1E+02 0.0023 30.6 14.0 115 162-278 926-1071(1480)
408 cd00280 TRFH Telomeric Repeat 72.4 38 0.00083 25.3 9.1 20 130-149 120-139 (200)
409 PF09670 Cas_Cas02710: CRISPR- 72.3 63 0.0014 27.8 11.0 57 163-220 138-198 (379)
410 PF11817 Foie-gras_1: Foie gra 72.3 28 0.00061 27.7 7.6 58 89-146 181-243 (247)
411 PF11817 Foie-gras_1: Foie gra 72.0 31 0.00067 27.5 7.8 60 298-357 180-244 (247)
412 PF09986 DUF2225: Uncharacteri 71.0 47 0.001 25.8 11.5 27 124-150 168-194 (214)
413 PF14853 Fis1_TPR_C: Fis1 C-te 70.7 17 0.00037 20.6 5.3 26 300-325 5-30 (53)
414 COG0735 Fur Fe2+/Zn2+ uptake r 70.4 37 0.0008 24.4 7.2 62 73-135 8-69 (145)
415 PF14853 Fis1_TPR_C: Fis1 C-te 69.5 18 0.0004 20.5 5.5 23 162-184 7-29 (53)
416 PF14561 TPR_20: Tetratricopep 69.3 28 0.0006 22.5 8.6 33 153-185 19-51 (90)
417 KOG2422 Uncharacterized conser 69.2 89 0.0019 28.3 17.6 158 28-185 250-448 (665)
418 KOG1839 Uncharacterized protei 69.0 1E+02 0.0022 31.0 11.3 125 95-219 941-1085(1236)
419 PF04910 Tcf25: Transcriptiona 68.7 74 0.0016 27.2 20.1 31 48-78 37-67 (360)
420 PF11846 DUF3366: Domain of un 68.6 27 0.00057 26.5 6.6 34 82-115 140-173 (193)
421 PF10255 Paf67: RNA polymerase 68.2 80 0.0017 27.4 12.4 60 159-218 125-191 (404)
422 PF09454 Vps23_core: Vps23 cor 68.0 17 0.00037 21.7 4.2 49 13-62 5-53 (65)
423 PRK10564 maltose regulon perip 67.4 15 0.00032 29.9 4.9 37 158-194 259-295 (303)
424 PF15297 CKAP2_C: Cytoskeleton 67.3 53 0.0012 27.5 8.1 64 276-341 118-185 (353)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 66.8 41 0.00088 23.4 8.4 43 139-181 81-124 (126)
426 KOG4521 Nuclear pore complex, 66.7 1.4E+02 0.0031 29.8 14.7 124 158-284 985-1125(1480)
427 smart00386 HAT HAT (Half-A-TPR 65.9 13 0.00029 17.6 3.7 15 31-45 2-16 (33)
428 COG5191 Uncharacterized conser 65.6 24 0.00052 28.9 5.7 78 13-92 104-182 (435)
429 COG5159 RPN6 26S proteasome re 64.7 76 0.0016 25.8 14.6 200 21-220 8-235 (421)
430 KOG0551 Hsp90 co-chaperone CNS 64.6 76 0.0017 26.5 8.3 87 94-181 89-178 (390)
431 KOG1839 Uncharacterized protei 64.5 1.1E+02 0.0025 30.7 10.8 156 200-355 941-1123(1236)
432 COG5159 RPN6 26S proteasome re 64.3 77 0.0017 25.8 14.8 54 56-109 8-68 (421)
433 PF10366 Vps39_1: Vacuolar sor 63.0 26 0.00056 23.6 4.9 27 53-79 41-67 (108)
434 KOG2422 Uncharacterized conser 62.5 1.2E+02 0.0027 27.5 15.5 79 268-346 349-431 (665)
435 PF09477 Type_III_YscG: Bacter 62.2 45 0.00098 22.4 9.1 93 29-129 19-111 (116)
436 KOG0551 Hsp90 co-chaperone CNS 61.9 94 0.002 26.0 8.4 93 54-147 84-179 (390)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 61.5 52 0.0011 22.9 9.9 44 314-357 81-125 (126)
438 KOG2066 Vacuolar assembly/sort 61.5 1.5E+02 0.0032 28.1 18.4 151 58-218 363-532 (846)
439 COG5108 RPO41 Mitochondrial DN 61.1 77 0.0017 29.3 8.4 74 21-97 33-114 (1117)
440 PF11663 Toxin_YhaV: Toxin wit 60.7 12 0.00026 26.1 3.0 20 66-85 110-129 (140)
441 COG5187 RPN7 26S proteasome re 59.4 97 0.0021 25.3 11.8 97 86-184 115-220 (412)
442 KOG4567 GTPase-activating prot 59.1 63 0.0014 26.6 6.9 43 282-324 264-306 (370)
443 TIGR02508 type_III_yscG type I 57.7 53 0.0012 21.8 7.9 50 130-185 48-97 (115)
444 PF11848 DUF3368: Domain of un 57.5 31 0.00067 19.0 4.7 29 28-56 14-42 (48)
445 KOG2300 Uncharacterized conser 56.7 1.4E+02 0.0031 26.5 29.1 339 17-357 89-511 (629)
446 KOG0991 Replication factor C, 56.6 98 0.0021 24.5 11.5 102 236-341 169-282 (333)
447 KOG0403 Neoplastic transformat 56.2 1.4E+02 0.0031 26.2 15.8 74 229-307 512-585 (645)
448 PF04190 DUF410: Protein of un 55.3 1.1E+02 0.0024 24.7 19.9 25 225-249 89-113 (260)
449 KOG0991 Replication factor C, 55.2 1E+02 0.0023 24.3 11.7 90 203-295 171-272 (333)
450 PF00244 14-3-3: 14-3-3 protei 54.3 1.1E+02 0.0023 24.3 12.7 40 57-96 7-46 (236)
451 PF05944 Phage_term_smal: Phag 53.9 76 0.0016 22.4 8.6 26 126-151 53-78 (132)
452 KOG3677 RNA polymerase I-assoc 53.8 1.2E+02 0.0027 26.2 8.1 58 56-113 240-299 (525)
453 PF10475 DUF2450: Protein of u 53.5 1.3E+02 0.0028 24.8 9.4 114 55-182 102-223 (291)
454 KOG0128 RNA-binding protein SA 53.3 2.1E+02 0.0046 27.4 27.9 97 15-114 112-218 (881)
455 KOG2063 Vacuolar assembly/sort 53.0 2.3E+02 0.005 27.7 17.5 248 89-354 507-776 (877)
456 cd07153 Fur_like Ferric uptake 52.2 53 0.0012 22.2 5.2 41 60-100 9-49 (116)
457 PRK09462 fur ferric uptake reg 51.3 90 0.0019 22.4 7.6 45 57-101 22-67 (148)
458 KOG2396 HAT (Half-A-TPR) repea 51.0 1.8E+02 0.004 26.0 22.8 100 223-324 456-558 (568)
459 cd07153 Fur_like Ferric uptake 50.3 61 0.0013 21.9 5.3 48 21-68 5-52 (116)
460 PRK09857 putative transposase; 49.9 1.5E+02 0.0032 24.5 8.5 64 301-365 211-274 (292)
461 PF10963 DUF2765: Protein of u 49.9 53 0.0012 20.8 4.3 35 10-44 10-44 (83)
462 PF01475 FUR: Ferric uptake re 49.1 49 0.0011 22.6 4.7 45 56-100 12-56 (120)
463 PF02847 MA3: MA3 domain; Int 48.7 80 0.0017 21.2 7.1 62 20-83 6-69 (113)
464 PF07720 TPR_3: Tetratricopept 48.7 37 0.00081 17.3 3.7 18 301-318 6-23 (36)
465 COG5108 RPO41 Mitochondrial DN 48.6 2.1E+02 0.0047 26.7 9.1 72 56-130 33-112 (1117)
466 COG4259 Uncharacterized protei 48.6 77 0.0017 20.9 6.3 21 91-111 77-97 (121)
467 PRK11639 zinc uptake transcrip 48.5 1.1E+02 0.0024 22.7 7.1 45 57-101 31-75 (169)
468 KOG2582 COP9 signalosome, subu 48.1 1.7E+02 0.0038 24.8 14.9 251 13-291 72-346 (422)
469 PF12926 MOZART2: Mitotic-spin 47.8 72 0.0016 20.4 7.2 43 37-79 29-71 (88)
470 cd08819 CARD_MDA5_2 Caspase ac 47.7 74 0.0016 20.4 6.9 14 100-113 50-63 (88)
471 cd08819 CARD_MDA5_2 Caspase ac 47.5 74 0.0016 20.4 6.1 14 240-253 50-63 (88)
472 PF02184 HAT: HAT (Half-A-TPR) 47.4 37 0.0008 16.9 3.5 22 172-195 3-24 (32)
473 KOG3677 RNA polymerase I-assoc 47.4 1.8E+02 0.004 25.2 8.1 59 21-79 240-300 (525)
474 PF04097 Nic96: Nup93/Nic96; 47.2 2.5E+02 0.0053 26.3 18.7 90 196-290 263-356 (613)
475 PF01475 FUR: Ferric uptake re 47.0 57 0.0012 22.3 4.7 47 20-66 11-57 (120)
476 KOG3636 Uncharacterized conser 47.0 2E+02 0.0043 25.2 13.7 86 116-202 178-271 (669)
477 PF09454 Vps23_core: Vps23 cor 46.6 63 0.0014 19.3 4.4 30 87-116 9-38 (65)
478 smart00777 Mad3_BUB1_I Mad3/BU 46.0 1E+02 0.0022 21.5 8.9 43 313-355 80-123 (125)
479 PF11663 Toxin_YhaV: Toxin wit 46.0 19 0.00042 25.2 2.1 24 343-366 107-130 (140)
480 PF07575 Nucleopor_Nup85: Nup8 45.4 2.5E+02 0.0055 25.9 18.1 63 295-359 404-466 (566)
481 KOG2659 LisH motif-containing 44.5 1.5E+02 0.0033 23.2 9.0 97 50-148 25-130 (228)
482 PF03745 DUF309: Domain of unk 43.7 69 0.0015 18.9 5.9 48 306-353 9-61 (62)
483 PRK11639 zinc uptake transcrip 43.6 1.3E+02 0.0029 22.2 7.6 58 78-136 18-75 (169)
484 COG2256 MGS1 ATPase related to 42.9 2.3E+02 0.0049 24.7 14.2 187 13-216 142-349 (436)
485 PF15297 CKAP2_C: Cytoskeleton 42.1 2.1E+02 0.0046 24.2 9.3 41 124-164 143-183 (353)
486 PF02607 B12-binding_2: B12 bi 42.0 57 0.0012 20.1 3.8 39 307-345 12-50 (79)
487 KOG0128 RNA-binding protein SA 41.8 3.3E+02 0.0071 26.3 24.3 135 48-185 110-260 (881)
488 COG4976 Predicted methyltransf 41.7 1.1E+02 0.0025 24.0 5.7 52 63-115 7-58 (287)
489 COG4976 Predicted methyltransf 41.4 93 0.002 24.5 5.2 54 131-185 5-58 (287)
490 PF10516 SHNi-TPR: SHNi-TPR; 41.4 54 0.0012 17.1 3.5 26 158-183 3-28 (38)
491 KOG2659 LisH motif-containing 41.3 1.7E+02 0.0038 22.9 10.4 98 187-286 22-128 (228)
492 KOG3807 Predicted membrane pro 41.0 2.2E+02 0.0047 23.9 12.4 20 130-149 284-303 (556)
493 KOG0687 26S proteasome regulat 40.6 2.2E+02 0.0048 23.9 11.9 136 46-185 65-210 (393)
494 KOG0687 26S proteasome regulat 40.6 2.2E+02 0.0048 23.9 13.3 25 228-252 106-130 (393)
495 PF04090 RNA_pol_I_TF: RNA pol 40.4 1.7E+02 0.0036 22.5 7.1 28 18-45 43-70 (199)
496 PF05944 Phage_term_smal: Phag 39.9 1.3E+02 0.0029 21.2 8.2 23 199-221 56-78 (132)
497 KOG2062 26S proteasome regulat 39.7 3.4E+02 0.0074 25.8 20.4 48 173-220 192-239 (929)
498 PRK13184 pknD serine/threonine 39.4 4E+02 0.0087 26.5 24.2 281 32-324 535-868 (932)
499 PRK09462 fur ferric uptake reg 39.2 1.4E+02 0.0031 21.4 7.4 57 78-135 9-66 (148)
500 COG5191 Uncharacterized conser 38.6 1.8E+02 0.0039 24.2 6.6 68 153-221 104-172 (435)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-59 Score=426.34 Aligned_cols=363 Identities=21% Similarity=0.373 Sum_probs=355.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHccC
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMES--MGCKHDDVSYNILINGYCKNK 170 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ 170 (376)
+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.|+..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999976 578899999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 042039 171 EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFR 250 (376)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (376)
++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 042039 251 TLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN 330 (376)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (376)
.|.+.+..|+..+|+.++.+|++.|++++|.++|++|...+..||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHHHhh
Q 042039 331 VIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMVVDL 375 (376)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 375 (376)
..+|+.++.+|.+.|+.++|.+++++|.+.|+.||..+|++++..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998753
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-59 Score=420.70 Aligned_cols=368 Identities=23% Similarity=0.378 Sum_probs=353.8
Q ss_pred cccccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchH
Q 042039 8 IGVVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVV 87 (376)
Q Consensus 8 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (376)
...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQ--RDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILING 165 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (376)
+|+.++.+|++.|++++|.+++++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.+++|+..+|+.++.+
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 999999999999999999999999986 578999999999999999999999999999999999999999999999999
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHH
Q 042039 166 YCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEA 245 (376)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (376)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++++.|.+.+..|+..+|+.++.+|++.|++++|
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 246 VELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
.++|+.|...+..|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|++++|.+++++|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHhh----c-------------------CChhhHHHHHHHHHhCCCCCchHHHHHHHhh
Q 042039 326 AVAPNVIIFVTLIHGFVR----I-------------------NKPSKVIELLHKMKEKKVMPDASIVSMVVDL 375 (376)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 375 (376)
|+.||..+|+.++..|.+ . +..+.|..+|++|.+.|+.||..||+.+|.+
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 999999999999865432 1 2246799999999999999999999999865
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-53 Score=380.87 Aligned_cols=350 Identities=22% Similarity=0.359 Sum_probs=267.5
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHH
Q 042039 11 VCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFN 90 (376)
Q Consensus 11 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (376)
|+.||+.+|+.++..|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|.
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 445555555555555555555555555555554 2455555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 042039 91 VIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK 170 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (376)
.++.++...|..+.+.+++..+.+.|..||..+++.++.+|++.|++++|.++|+.|. +++..+|+.++.+|++.|
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCC
Confidence 5555555555555555555555566666667777778888888888888888888775 357788888888888888
Q ss_pred cHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 042039 171 EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFR 250 (376)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (376)
++++|+++|++|.+.|+.||..+|..++.+|++.|+++.|.+++..|.+.+.+|+..+++.++.+|++.|++++|.++|+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-cCCCC
Q 042039 251 TLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE-NAVAP 329 (376)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~ 329 (376)
.|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|
T Consensus 385 ~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 385 RMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred hCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 8763 577788888888888888888888888888888888888888888888888888888888888875 57888
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHHHhh
Q 042039 330 NVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMVVDL 375 (376)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 375 (376)
+..+|+.++.+|.+.|+.++|.+++++| ++.|+..+|++++.+
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA 503 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 8888888888888888888888887765 678888888888765
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-52 Score=376.91 Aligned_cols=354 Identities=23% Similarity=0.342 Sum_probs=332.1
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHH
Q 042039 11 VCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFN 90 (376)
Q Consensus 11 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (376)
+..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|.+.|++++|.++|++|. .||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence 45788999999999999999999999999999998988999999999999999999999999998885 36888999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 042039 91 VIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK 170 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (376)
.++.+|++.|++++|.++|++|.+.|..|+..+|..++.+++..|..+.+.+++..+.+.|..++..+++.++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999988899999999999999999999999999999999998999999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 042039 171 EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFR 250 (376)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (376)
++++|.++|+.|.. ++..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999854 58899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 042039 251 TLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN 330 (376)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (376)
.+.+.+..|+..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999965 5889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHh-CCCCCchHHHHHHHhhC
Q 042039 331 VIIFVTLIHGFVRINKPSKVIELLHKMKE-KKVMPDASIVSMVVDLL 376 (376)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~l 376 (376)
..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|++++++|
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999986 59999999999999875
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-51 Score=377.42 Aligned_cols=354 Identities=24% Similarity=0.369 Sum_probs=217.2
Q ss_pred cccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhH
Q 042039 10 VVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTF 89 (376)
Q Consensus 10 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (376)
.|+.||+.+|+.++..|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|.++|++|...|+.||..+|
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 3556666666666666666666666666666665 345556666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
+.++.++.+.|+.+.+.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|.+.
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhC
Confidence 66666666666666666666666666666666666666666666666666666665553 24555566666666666
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHH
Q 042039 170 KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELF 249 (376)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (376)
|++++|+++|++|.+.|+.|+..+|..++.++++.|+++.+.++++.+.+.|..++..+++.++.+|.+.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666665555555555555555555555555555555555555555555555555555555555555544444
Q ss_pred HHhccc------------------------------CCCchHHHHHHHH-------------------------------
Q 042039 250 RTLGIL------------------------------KCELDIQAYNCLI------------------------------- 268 (376)
Q Consensus 250 ~~~~~~------------------------------~~~~~~~~~~~l~------------------------------- 268 (376)
+.|.+. +..||..+|..++
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 443221 2355555544433
Q ss_pred ----HHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 042039 269 ----DGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRI 344 (376)
Q Consensus 269 ----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (376)
.+|.+.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 4445555555555555544 3566677777777777777777777777777777777777777777777777
Q ss_pred CChhhHHHHHHHHH-hCCCCCchHHHHHHHhhC
Q 042039 345 NKPSKVIELLHKMK-EKKVMPDASIVSMVVDLL 376 (376)
Q Consensus 345 g~~~~a~~~~~~~~-~~~~~p~~~~~~~ll~~l 376 (376)
|++++|.++|+.|. +.|+.|+..+|++++++|
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 77777777777777 457777777777776653
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-51 Score=375.68 Aligned_cols=355 Identities=21% Similarity=0.274 Sum_probs=328.5
Q ss_pred ccccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHh
Q 042039 9 GVVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVT 88 (376)
Q Consensus 9 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (376)
..|++||..+|+.++.+|...+++..+.+++..+.+.|..||..+++.++.+|.+.|++++|.++|++|. .||..+
T Consensus 180 ~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s 255 (857)
T PLN03077 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCIS 255 (857)
T ss_pred HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcch
Confidence 4589999999999999999999999999999999999999999999999999999999999999999986 468899
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCK 168 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (376)
|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+...|+.|+..+|+.++.+|.+
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHH
Q 042039 169 NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVEL 248 (376)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (376)
.|++++|.++|++|. .|+..+|+.++.+|.+.|++++|.++|++|.+.++.|+..+|..++.+|++.|++++|.++
T Consensus 336 ~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 336 LGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred cCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999986 3688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC-
Q 042039 249 FRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAV- 327 (376)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 327 (376)
++.+.+.|..|+..+++.++.+|.+.|++++|.++|++|.+. |..+|+.++.+|.+.|+.++|..+|++|... +
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~ 486 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LK 486 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999999999999999999998653 5566666666666666666666666666532 3
Q ss_pred ----------------------------------------------------------------CCcHHHHHHHHHHHhh
Q 042039 328 ----------------------------------------------------------------APNVIIFVTLIHGFVR 343 (376)
Q Consensus 328 ----------------------------------------------------------------~~~~~~~~~l~~~~~~ 343 (376)
.||..+|+.++.+|.+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~ 566 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVA 566 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 3456678888899999
Q ss_pred cCChhhHHHHHHHHHhCCCCCchHHHHHHHhhC
Q 042039 344 INKPSKVIELLHKMKEKKVMPDASIVSMVVDLL 376 (376)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~l 376 (376)
.|+.++|+++|++|.+.|+.||..||+.+|.++
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.9e-27 Score=221.82 Aligned_cols=349 Identities=12% Similarity=0.069 Sum_probs=264.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
+.+..++..+...+.+.|++++|...++++...+ +.+...+..++..+...|++++|.++++++.+.. +.+...|..+
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 3456778888888888888888888888887765 5567777788888888888888888888887653 3366778888
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
+.++...|++++|...++.+.+.. +.+...+..++.++...|++++|..+++++.... |.+..++..++..+...|++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 888888888888888888887764 3456677778888888888888888888887765 55677788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 173 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
++|.++++.+.... +.+...+..+...+...|++++|.+.+..+.... |+..++..++.++.+.|++++|...++.+
T Consensus 686 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 686 ESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888887763 4466677777788888888888888888887764 34466777778888888888888888887
Q ss_pred cccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH
Q 042039 253 GILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVI 332 (376)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (376)
.... +.+...+..++..|...|++++|...|+++.+. .++++.++..++..+...|+ .+|+.+++++.+... .+..
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~ 838 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPA 838 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcH
Confidence 7655 346777788888888888888888888887766 45567777788888888888 778888888776532 2455
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHHH
Q 042039 333 IFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMVV 373 (376)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 373 (376)
++..+...+...|++++|.++++++.+.+.. +..++..+.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 878 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLA 878 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHH
Confidence 6667777778888888888888888876543 555555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.8e-26 Score=217.34 Aligned_cols=330 Identities=15% Similarity=0.104 Sum_probs=152.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
..+..++..+.+.|++++|..+++.+.+.. +.+..+|..++.++...|++++|...|+++.+... .+...+..+..++
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 344444444445555555555555444332 33444444445555555555555555554444321 1333444444444
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHH
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEAL 176 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (376)
...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.... +.+...+..++.++...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 44555555555555444432 2234444444444455555555555555444443 333444444444444555555555
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC
Q 042039 177 SLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK 256 (376)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (376)
..|+.+... .|+..++..++.++...|++++|.+.++.+.+.. +.+...+..++..|...|++++|..+|+++....
T Consensus 724 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 724 QAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 555544443 2222344444444444555555555554444432 3334444444444444555555555555444433
Q ss_pred CCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHH
Q 042039 257 CELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVT 336 (376)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (376)
+.++..+..++..+...|+ .+|+.+++++... .+.+..++..++..+...|++++|...++++.+.+.. +..++..
T Consensus 801 -p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~ 876 (899)
T TIGR02917 801 -PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYH 876 (899)
T ss_pred -CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHH
Confidence 2244444444444444444 4455554444433 2223344444444444455555555555555444322 4444444
Q ss_pred HHHHHhhcCChhhHHHHHHHH
Q 042039 337 LIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~ 357 (376)
++.++.+.|++++|.+++++|
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=2.9e-25 Score=188.46 Aligned_cols=307 Identities=16% Similarity=0.146 Sum_probs=225.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHH
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN---AFTYSTLMDG 130 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 130 (376)
....+..+...|++++|...|+++.+.++ .+..++..+...+...|++++|..+++.++.....++ ...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 33345556677888888888888887643 2556777777888888888888888888776432211 2456677888
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhccc
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT----VVTYNTLFLGLFEIHQ 206 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 206 (376)
|...|++++|..+|+++.+.. +.+..++..++.++...|++++|.+.++.+.+.+..+. ...+..++..+...|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 888888888888888887654 45667788888888888888888888888877543222 1234556677778888
Q ss_pred hHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhc
Q 042039 207 VEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRS 286 (376)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (376)
+++|...++++.+.. +.+...+..++..+.+.|++++|.++++++...+......++..++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887764 4455677778888888888888888888887654333345677888888888899999888888
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh---cCChhhHHHHHHHHHhCCCC
Q 042039 287 LPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR---INKPSKVIELLHKMKEKKVM 363 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~ 363 (376)
+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.++++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 7765 355566678888888889999999988888775 5777777777766554 45888888888888887666
Q ss_pred CchH
Q 042039 364 PDAS 367 (376)
Q Consensus 364 p~~~ 367 (376)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 6553
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=3.8e-24 Score=190.09 Aligned_cols=334 Identities=11% Similarity=0.028 Sum_probs=278.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
-...++..+.+.|++++|..+++...... +.+...+..++.+....|++++|...++++....+. +...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34556778889999999999999998875 666778888888889999999999999999987443 6778888999999
Q ss_pred hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHH
Q 042039 98 KNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALS 177 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (376)
..|++++|...++++++.. +.+...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999999863 4457788899999999999999999999887764 3444455444 34788999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHH----HHHHHHHhc
Q 042039 178 LYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVE----AVELFRTLG 253 (376)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~ 253 (376)
.++.+.+....++......+...+...|++++|...++++.... +.+...+..++..+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99998876433445555566788889999999999999999875 5567788889999999999986 899999998
Q ss_pred ccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-H
Q 042039 254 ILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNV-I 332 (376)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 332 (376)
...+ .+...+..++..+...|++++|...++++... .+.+...+..++.++.+.|++++|+..++++.+.+ |+. .
T Consensus 278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 8763 37889999999999999999999999998876 45567788889999999999999999999998763 443 3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 333 IFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
.+..+..++...|++++|...|++..+..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34445678899999999999999988653
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=8.5e-25 Score=185.65 Aligned_cols=307 Identities=14% Similarity=0.095 Sum_probs=254.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc---hHhHHHHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS---VVTFNVIMDE 95 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 95 (376)
.......+...|++++|+..|+++.+.+ +.+..++..++..+...|++++|..+++.+...+..++ ...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3334456678899999999999999886 66778999999999999999999999999987643222 2467888999
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCc
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHD----DVSYNILINGYCKNKE 171 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 171 (376)
+...|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+...+..+. ...+..++..+.+.|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999863 45678899999999999999999999999987652222 1245677888899999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHH
Q 042039 172 VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRT 251 (376)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (376)
+++|...++++.+.. +.+...+..++..+...|++++|.+.++++...+......++..++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998863 3356678888999999999999999999998765333346678899999999999999999999
Q ss_pred hcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHc---cCChhHHHHHHHHHHHcCCC
Q 042039 252 LGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCN---DGQMDKAHDLFLDMEENAVA 328 (376)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 328 (376)
+.... |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.++.
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 88764 45556688999999999999999999998875 5777788877777664 56899999999999987776
Q ss_pred CcHH
Q 042039 329 PNVI 332 (376)
Q Consensus 329 ~~~~ 332 (376)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 6665
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=7.1e-25 Score=179.81 Aligned_cols=336 Identities=18% Similarity=0.164 Sum_probs=256.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchH-------
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVV------- 87 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 87 (376)
-..+|..+...+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 35789999999999999999999999999875 567889999999999999999999998888775 33222
Q ss_pred ----------------------------hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCcHH
Q 042039 88 ----------------------------TFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN-AFTYSTLMDGFCLTGKIN 138 (376)
Q Consensus 88 ----------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 138 (376)
.|..|...+-.+|+...|+..|++.++. .|+ ...|..+...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 2333333344455555555555555553 333 556667777777777777
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhccchHHHHHHHHHH
Q 042039 139 RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT-VVTYNTLFLGLFEIHQVEHALKLFEEM 217 (376)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (376)
.|...|.++.... |....++.++...|...|+.+-|+..|++.++. .|+ +..|+.+..++-..|++.+|.+.+.+.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 7777777766654 455666777777777777788888888877774 343 678888888888888888888888888
Q ss_pred HhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCC-H
Q 042039 218 QRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVAD-V 296 (376)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 296 (376)
+... +......+.++..|...|.+++|..+|....+.... -...++.|+..|.++|++++|+..|+++++. .|+ .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 8774 556777888888888888899998888887765422 3567888888999999999999999988874 444 5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCch
Q 042039 297 VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN-VIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDA 366 (376)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 366 (376)
..++.++..|-..|+.+.|+..+.+++.. .|. ...++.|...|...|+..+|+.-++...+ +.||.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 68888999999999999999999988874 444 56788899999999999999999999885 45554
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=9.3e-23 Score=181.89 Aligned_cols=255 Identities=14% Similarity=0.031 Sum_probs=160.7
Q ss_pred ChHHHHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHH
Q 042039 101 KMDEASRLLDLMVQRD-VRP-NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSL 178 (376)
Q Consensus 101 ~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (376)
++++|...|+..++.+ ..| ....+..+...+...|++++|...+++..... |.....|..++.++...|++++|+..
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4445555555555432 112 23445556666666777777777777776654 34455666777777777777777777
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCC
Q 042039 179 YREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCE 258 (376)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (376)
++++++.. +.+..++..+...+...|++++|...|++.++.. +.+...+..++.++.+.|++++|+..++++.... +
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P 464 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-P 464 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 77776642 3346667777777777777777777777777664 4455566667777777777777777777766543 3
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCH------HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH
Q 042039 259 LDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADV------VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVI 332 (376)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (376)
.++..+..++.++...|++++|+..|+++.......+. ..+...+..+...|++++|..+++++.+... .+..
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~ 543 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDI 543 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHH
Confidence 35666777777777777777777777776553211111 0111122223345777777777777766532 2344
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 333 IFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
.+..+...+.+.|++++|++.|++..+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6677777788888888888888777654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=5.3e-24 Score=174.76 Aligned_cols=324 Identities=13% Similarity=0.078 Sum_probs=262.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCC---------------------------------CCChhhHHHHHHHHh
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENI---------------------------------NPDVVTYNSLIHGLC 62 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~ 62 (376)
+..|..+..++...|+.+.|.+.|.+.++.+. +--..+|..|...+-
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFN 229 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHh
Confidence 45566666666666666666666666555431 111334556666666
Q ss_pred cCCChHHHHHHHHHHHhcCCCCc-hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHH
Q 042039 63 HANDWNEAKRLFFEMMDQGVQPS-VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAE 141 (376)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 141 (376)
.+|+...|++.|++..+. .|+ ...|..|...|...+.+++|...|.+..... +.....+..+...|..+|.++.|+
T Consensus 230 ~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred hcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHH
Confidence 777888888888887775 444 5689999999999999999999999998863 334778889999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 042039 142 ELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
..|++..+.. |.-+.+|++|..++-..|+..+|.+.|.+.+.. .+....+.+.+..++...|.++.|..+|....+-.
T Consensus 307 ~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 307 DTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred HHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 9999999886 667789999999999999999999999999986 33457889999999999999999999999998764
Q ss_pred CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHH
Q 042039 222 VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNI 301 (376)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (376)
+.-...++.++..|-++|++++|+..|+++.+.. +.-...++.++..|...|+...|++.+.+++.. .|.-...++.
T Consensus 385 -p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~-nPt~AeAhsN 461 (966)
T KOG4626|consen 385 -PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI-NPTFAEAHSN 461 (966)
T ss_pred -hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-CcHHHHHHhh
Confidence 4456789999999999999999999999998775 224689999999999999999999999998875 2334678899
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCChhh
Q 042039 302 MIHGLCNDGQMDKAHDLFLDMEENAVAPN-VIIFVTLIHGFVRINKPSK 349 (376)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 349 (376)
|...|-..|+..+|+.-++..++. +|| +..+..++.+..-..+|..
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999999999999985 555 5667777776544444444
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=3.7e-22 Score=177.51 Aligned_cols=337 Identities=12% Similarity=0.066 Sum_probs=267.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
+...+..++.++...|++++|+..++++.... |.+...+..+...+...|++++|...++++....+. +...+..++.
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~ 152 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLR 152 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45567777788888999999999999999886 677889999999999999999999999999986433 6778888999
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE 174 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (376)
++...|++++|...++.+..... .+...+..+ ..+...|++++|...++.+......++......++..+...|++++
T Consensus 153 ~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 153 TLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 99999999999999998877642 233344333 3478899999999999998876533444455666788999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHH----HHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 042039 175 ALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEH----ALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFR 250 (376)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (376)
|+..++++.... +.+...+..+...+...|++++ |...++++.+.. +.+...+..++..+...|++++|...++
T Consensus 231 A~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 231 AIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999863 4467788889999999999985 899999998875 5577889999999999999999999999
Q ss_pred HhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 042039 251 TLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN 330 (376)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (376)
++....+. ++..+..++.++...|++++|...++.+... .+.+...+..++.++...|++++|...|+++.+....-.
T Consensus 309 ~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 309 QSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99887633 6778888999999999999999999998875 222334455567889999999999999999987532211
Q ss_pred HH----HHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 331 VI----IFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 331 ~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.. ....+-.++...+.+++...+..++.-
T Consensus 387 ~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 387 PQSFEEGLLALDGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred hhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence 22 233333444445555555456666543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=6.5e-22 Score=176.49 Aligned_cols=337 Identities=15% Similarity=0.049 Sum_probs=266.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
.+......+.+.|++++|+..|++.+.. .|+...|..+..+|...|++++|++.+++.++..+. +...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3556778899999999999999999876 567889999999999999999999999999987433 6778899999999
Q ss_pred hCCChHHHHHHHHHHHhcCC-----------------------------CCChhhHHHHHHH------------------
Q 042039 98 KNGKMDEASRLLDLMVQRDV-----------------------------RPNAFTYSTLMDG------------------ 130 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~------------------ 130 (376)
..|++++|...+..+...+. +++...+..+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999876654432110 0110011111000
Q ss_pred ------------H------HhcCcHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 042039 131 ------------F------CLTGKINRAEELFGSMESMG--CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT 190 (376)
Q Consensus 131 ------------~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 190 (376)
. ...+++++|.+.|+.....+ .+.....+..++.++...|++++|+..+++.+... +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 0 12257889999999998764 23455678889999999999999999999999852 234
Q ss_pred HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHH
Q 042039 191 VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDG 270 (376)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (376)
...|..+...+...|++++|...++.+++.+ +.+..++..++..+...|++++|...|+++....+ .+...+..++.+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHH
Confidence 6688899999999999999999999998875 56778999999999999999999999999988763 367788899999
Q ss_pred HHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH------HHHHHHHHHHhhc
Q 042039 271 LCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNV------IIFVTLIHGFVRI 344 (376)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~ 344 (376)
+.+.|++++|+..+++..+. .+.+...+..++.++...|++++|++.|+++.+.....+. ..+......+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999998876 4567889999999999999999999999999875322111 1122222334457
Q ss_pred CChhhHHHHHHHHHhCC
Q 042039 345 NKPSKVIELLHKMKEKK 361 (376)
Q Consensus 345 g~~~~a~~~~~~~~~~~ 361 (376)
|++++|..++++..+..
T Consensus 522 ~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 522 QDFIEAENLCEKALIID 538 (615)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999999988654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2e-21 Score=184.22 Aligned_cols=338 Identities=15% Similarity=0.087 Sum_probs=180.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-ChhhH------------HHHHHHHhcCCChHHHHHHHHHHHhcC
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINP-DVVTY------------NSLIHGLCHANDWNEAKRLFFEMMDQG 81 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (376)
+..++..+...+.+.|++++|+..|++..+..... ....| ......+...|++++|+..|+++++..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44455555555555555555555555555442111 10111 112334445555555555555555542
Q ss_pred CCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH----------------------------------
Q 042039 82 VQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL---------------------------------- 127 (376)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------------------------- 127 (376)
+. +...+..+..++...|++++|++.|+++++.. +.+...+..+
T Consensus 382 P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 382 NT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 22 34445555556666666666666666665542 1122222111
Q ss_pred --------HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042039 128 --------MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFL 199 (376)
Q Consensus 128 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 199 (376)
...+...|++++|.+.|+++.+.. |.+...+..++.+|.+.|++++|...++++.+.. +.+...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 222334455666666666655543 3344555556666666666666666666655431 112222222222
Q ss_pred HHHhccchHHHHHHHHHHHhc---------------------------------------CCCCCcchHHHHHHHHHhCC
Q 042039 200 GLFEIHQVEHALKLFEEMQRD---------------------------------------DVAADTSTYNTFIDGLCKNG 240 (376)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~~ 240 (376)
.+...++.++|...++.+... ..+.+...+..++..+.+.|
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 222233333333322221000 01334445556666677777
Q ss_pred CHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 042039 241 YIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFL 320 (376)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (376)
++++|+..|+.+.... +.++..+..++..+...|++++|++.++.+.+. .+.+......+..++...|++++|.++++
T Consensus 618 ~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 618 DYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7777777777776665 335677777777777777777777777766654 23345566667777777777777777777
Q ss_pred HHHHcCCC--C---cHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 321 DMEENAVA--P---NVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 321 ~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
++.+.... | +...+..+...+...|++++|+..|++..
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77654221 1 22345555667777777888877777765
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=5.9e-21 Score=181.10 Aligned_cols=331 Identities=14% Similarity=0.064 Sum_probs=248.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc-hHhH------------
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS-VVTF------------ 89 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------ 89 (376)
...+...|++++|+..|++..+.. |.+..++..+..++.+.|++++|+..|++.++...... ...|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 566778999999999999999875 66889999999999999999999999999998644321 1111
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHH------
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILI------ 163 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------ 163 (376)
......+.+.|++++|...|+++++.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 123456778999999999999999874 4467788889999999999999999999998765 33444433332
Q ss_pred ------------------------------------HHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccch
Q 042039 164 ------------------------------------NGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQV 207 (376)
Q Consensus 164 ------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (376)
..+...|++++|++.|+++++.. +.+...+..+...+.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33456788888888888888752 33566777888889999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc--------------------------------
Q 042039 208 EHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL-------------------------------- 255 (376)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 255 (376)
++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999887754 334444443333344444444444444432111
Q ss_pred -------CCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 042039 256 -------KCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVA 328 (376)
Q Consensus 256 -------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (376)
..+.++..+..++..+.+.|++++|+..|+++.+. .|.+...+..++..+...|++++|++.++.+.+.. +
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 01334556677888888889999999999988876 45677888889999999999999999999887643 2
Q ss_pred CcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 329 PNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 329 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
.+...+..+..++...|++++|.++++++.+.
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 24566777788888899999999999998765
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.3e-19 Score=164.67 Aligned_cols=340 Identities=12% Similarity=0.033 Sum_probs=245.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
.+...+..+...+.+.|++++|.++|++..+.. |.+...+..++.++...|++++|+..++++++..+. +.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHH
Confidence 344568888899999999999999999988775 667778888889999999999999999999887333 555 88888
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHH----------------------------
Q 042039 94 DELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFG---------------------------- 145 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------- 145 (376)
.++...|+.++|+..++++.+.. +.+...+..++.++...+..+.|.+.++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 88999999999999999999874 3345555666666666566554443333
Q ss_pred ------------------HHHhc-CCCCChh-hH----HHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCHhHHHHHHHH
Q 042039 146 ------------------SMESM-GCKHDDV-SY----NILINGYCKNKEVEEALSLYREMVSKGIK-PTVVTYNTLFLG 200 (376)
Q Consensus 146 ------------------~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 200 (376)
.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+ .....+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHH
Confidence 33322 0111111 11 11122345668889999999998876422 22 122335678
Q ss_pred HHhccchHHHHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC-----------Cch---HHH
Q 042039 201 LFEIHQVEHALKLFEEMQRDDVAA---DTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC-----------ELD---IQA 263 (376)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~ 263 (376)
+...|++++|...|+.+.+..... .......+..++...|++++|..+++.+....+ .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 888999999999999887653111 123455666678889999999999888865531 122 234
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 042039 264 YNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR 343 (376)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (376)
+..++..+...|++++|+++++++... .|.+...+..++..+...|++++|++.++++.+.. +.+...+...+..+.+
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHH
Confidence 566777888889999999999988776 56678888888999999999999999999988854 2245666677778888
Q ss_pred cCChhhHHHHHHHHHhC
Q 042039 344 INKPSKVIELLHKMKEK 360 (376)
Q Consensus 344 ~g~~~~a~~~~~~~~~~ 360 (376)
.|++++|..+++++.+.
T Consensus 440 ~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 89999999999998864
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.4e-18 Score=158.09 Aligned_cols=346 Identities=10% Similarity=0.029 Sum_probs=261.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
-++....-.+......|+.++|+++|++..... +.+...+..++..+...|++++|.++|+++++..+ .+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344455566677889999999999999998643 56677899999999999999999999999988733 3567778888
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHH
Q 042039 94 DELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVE 173 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (376)
.++...|++++|...++++++.. +.+.. +..+..++...|+.++|...++++.... |.+...+..++.++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 89999999999999999999873 44566 8889999999999999999999999886 556667777777777666666
Q ss_pred HHHHHHH----------------------------------------------HHHHC-CCCCCHh-HHH----HHHHHH
Q 042039 174 EALSLYR----------------------------------------------EMVSK-GIKPTVV-TYN----TLFLGL 201 (376)
Q Consensus 174 ~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~ 201 (376)
+|+..++ .+.+. ...|+.. .+. ..+..+
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 5554444 33321 1112111 111 113345
Q ss_pred HhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCc---hHHHHHHHHHHHHhCCChH
Q 042039 202 FEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCEL---DIQAYNCLIDGLCKSGRLE 278 (376)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 278 (376)
...+++++|+..|+.+.+.+.+........+..+|...|++++|+..|+++....... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 6778999999999999887522112233346778999999999999999987654221 1345666777889999999
Q ss_pred HHHHHHhcccccCC-----------CCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 042039 279 IALELFRSLPRRVL-----------VAD---VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRI 344 (376)
Q Consensus 279 ~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (376)
+|...++.+..... .|+ ...+..++..+...|++++|+++++++.... +.+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99999998876421 122 2345677888999999999999999998864 33678888999999999
Q ss_pred CChhhHHHHHHHHHhCCCCCchH
Q 042039 345 NKPSKVIELLHKMKEKKVMPDAS 367 (376)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~p~~~ 367 (376)
|++++|++.+++..+. .|+..
T Consensus 407 g~~~~A~~~l~~al~l--~Pd~~ 427 (765)
T PRK10049 407 GWPRAAENELKKAEVL--EPRNI 427 (765)
T ss_pred CCHHHHHHHHHHHHhh--CCCCh
Confidence 9999999999999864 46653
No 21
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=5e-17 Score=139.58 Aligned_cols=338 Identities=15% Similarity=0.132 Sum_probs=261.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
....-.....+...|++++|.+++.++++.. +.+...|..|..+|-+.|+.+++...+-.+...+++ |...|..+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3444444555666799999999999999886 778899999999999999999999998777665444 67899999999
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHccCc
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDV----SYNILINGYCKNKE 171 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 171 (376)
..+.|+++.|.-+|.++++.. +++......-+..|-+.|+...|...|.++.....+.+.. .-...+..+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999985 5566666777889999999999999999998875322322 23345667777888
Q ss_pred HHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC---------------------------CC
Q 042039 172 VEEALSLYREMVSK-GIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD---------------------------VA 223 (376)
Q Consensus 172 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~ 223 (376)
-+.|.+.++..... +-..+...++.++..+....+++.+......+.... ..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 89999999988773 223355667788888889999999988887776511 11
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC--CCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHH
Q 042039 224 ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK--CELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNI 301 (376)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (376)
++..+ ..+..++......+....+........ +.-+...+..+..++...|++.+|+.+|..+.......+...|..
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 12222 123333444444444444444444444 334578899999999999999999999999987755566789999
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 302 MIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
++.+|...|.+++|.+.|++++... +.+...-..|...+.+.|++++|.+.+..+.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999863 2255666677788999999999999999875
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=2.3e-16 Score=141.46 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=93.6
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC-----CchHHHHHHHHHHHHhC
Q 042039 200 GLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC-----ELDIQAYNCLIDGLCKS 274 (376)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 274 (376)
++...++..++++.++.+...+.+....+...++.+|...+.+++|..+++.+..... +++......|..++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 3444555566666666665555443444566666677777777777777776644321 12233345666677777
Q ss_pred CChHHHHHHHhcccccCC-----------CCCH---HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 042039 275 GRLEIALELFRSLPRRVL-----------VADV---VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHG 340 (376)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (376)
+++++|..+++++.+... .||+ ..+..++..+...|++.+|++.++++.... +-|......+...
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 777777777776654211 1111 233445556666777777777777776543 2366666666777
Q ss_pred HhhcCChhhHHHHHHHHH
Q 042039 341 FVRINKPSKVIELLHKMK 358 (376)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~ 358 (376)
+...|.+..|...++...
T Consensus 460 ~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 460 YLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 777777777777775554
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=2.6e-16 Score=143.99 Aligned_cols=320 Identities=10% Similarity=0.019 Sum_probs=192.4
Q ss_pred CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-C-CCCchHhHHHHHHHHHhCCC---hHH
Q 042039 30 GFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ-G-VQPSVVTFNVIMDELCKNGK---MDE 104 (376)
Q Consensus 30 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~ 104 (376)
+...++.+.+..+.+.. +-+......+.....+.|+.++|.++|+..... + ..++......++..|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 55555666666555542 345566666666667777777777777776652 1 11223333355555555544 222
Q ss_pred HHHH----------------------HHHHHhc-C-CCC--ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhh
Q 042039 105 ASRL----------------------LDLMVQR-D-VRP--NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVS 158 (376)
Q Consensus 105 a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (376)
+..+ +...... + .++ +...+..+..++.. ++.++|...+.+..... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 2111 1111111 0 123 45566666666665 66777777666666553 34333
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 042039 159 YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK 238 (376)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (376)
...++..+...|++++|...++++... +|+...+..+...+...|+.+.|...++..++.+ +.....+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 333444445677777777777776553 3444445566666777777777777777776654 2233333333334445
Q ss_pred CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 042039 239 NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDL 318 (376)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 318 (376)
.|++++|...++++.... |+...+..++.++.+.|++++|+..++++... .|.+...+..+..++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777777777776654 34666777777777777777777777777665 345566777777777777777777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 319 FLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
++++.+..+ .+...+..+..++...|++++|+..+++..+.
T Consensus 666 l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777776532 25566777777777777777777777777643
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=1.2e-16 Score=134.65 Aligned_cols=285 Identities=11% Similarity=0.071 Sum_probs=223.4
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCchHh-HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCcHH
Q 042039 62 CHANDWNEAKRLFFEMMDQGVQPSVVT-FNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTY--STLMDGFCLTGKIN 138 (376)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 138 (376)
...|++++|.+.+....+.. +++.. +.....+..+.|+++.|..++.++.+. .|+.... ......+...|+++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 34699999998888766542 22333 333355558999999999999999875 4444322 24477889999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHHhccchHHHH
Q 042039 139 RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTV-------VTYNTLFLGLFEIHQVEHAL 211 (376)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 211 (376)
.|...++++.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999887 778889999999999999999999999999987554322 12333344344445556666
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccC
Q 042039 212 KLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV 291 (376)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (376)
++++.+.+. .+.++.....++..+...|+.++|...+++..+. ++++.... +.+....++.+++.+..+...+.
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhh-
Confidence 666666443 3567888999999999999999999999998774 44554332 33334569999999999998876
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 292 LVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.|.|+..+..++..+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888999999999999999999999999985 68989989999999999999999999998764
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=5.2e-16 Score=142.08 Aligned_cols=333 Identities=13% Similarity=-0.008 Sum_probs=254.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhC-C-CCCChhhHHHHHHHHhcCCC---hHHHHHH----------------
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGE-N-INPDVVTYNSLIHGLCHAND---WNEAKRL---------------- 73 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~---------------- 73 (376)
+......+.-...+.|+.++|.++++..... + ...+......++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 4444455555677899999999999998763 1 12344455577777777765 3333222
Q ss_pred ------HHHHHhc-CC-CC--chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHH
Q 042039 74 ------FFEMMDQ-GV-QP--SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEEL 143 (376)
Q Consensus 74 ------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 143 (376)
++..... +. ++ +...|..+..++.. +++++|...+.+.... .|+......++..+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 2222221 11 23 56678888887776 8999999988888876 35555555556666789999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 042039 144 FGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVA 223 (376)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (376)
|+++... +|+...+..++.++.+.|++++|...+++.++.. +.....+..+.......|++++|...+++.++..
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 9998665 4555667788889999999999999999999863 3333444444445556699999999999999875
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHH
Q 042039 224 ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMI 303 (376)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (376)
|+...+..++.++.+.|++++|+..++++....+ .+...+..++.++...|++++|+..++++.+. .|.+...+..+.
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA 684 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLA 684 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 4678899999999999999999999999998874 37889999999999999999999999999886 456788999999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 304 HGLCNDGQMDKAHDLFLDMEENAVAPN-VIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.++...|++++|+..++++.+.. |+ ..+.........+..+++.+.+-+++...
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999864 43 35555566667777778888887777654
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=7.8e-17 Score=136.43 Aligned_cols=296 Identities=10% Similarity=0.033 Sum_probs=219.4
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCc-hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHH
Q 042039 60 GLCHANDWNEAKRLFFEMMDQGVQPS-VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKIN 138 (376)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (376)
.....|+++.|.+.+.+..+.. |+ ...+-....+....|+++.|..++.+..+....+...........+...|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 3456799999999999887753 44 33445556788899999999999999987532222234445688899999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHH---HHhccchHHHHHHHH
Q 042039 139 RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLG---LFEIHQVEHALKLFE 215 (376)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~ 215 (376)
.|...++.+.+.. |.++.++..+...+...|++++|.+.+..+.+.+..+..........+ ....+..+.+.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999886 678889999999999999999999999999998654332221111111 133333344444555
Q ss_pred HHHhcCC---CCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHH-HHHHHHHHhCCChHHHHHHHhcccccC
Q 042039 216 EMQRDDV---AADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAY-NCLIDGLCKSGRLEIALELFRSLPRRV 291 (376)
Q Consensus 216 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (376)
.+..... +.+...+..++..+...|+.++|.+.+++..+..+......+ ..........++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 5554421 247788899999999999999999999999886533221111 11122223457888899999887765
Q ss_pred CCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 292 LVADV--VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 292 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.|.|+ .....++..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566 677899999999999999999999654444578888888999999999999999999998653
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.1e-15 Score=137.26 Aligned_cols=332 Identities=12% Similarity=0.044 Sum_probs=236.7
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCCh
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKM 102 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (376)
...+...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 446667788888888888887775 556677777777778888888888888887765 34444444444444445556
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHH--------------------------------------
Q 042039 103 DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELF-------------------------------------- 144 (376)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-------------------------------------- 144 (376)
.+|+..++++.+.. +.+...+..+..++.+.|-...|.++.
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 56888888887763 334555555555554444333332222
Q ss_pred ----------HHHHhc-C-CCCChhh----HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchH
Q 042039 145 ----------GSMESM-G-CKHDDVS----YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVE 208 (376)
Q Consensus 145 ----------~~~~~~-~-~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (376)
+.+... + .|+.... ..-.+-++...+++.++++.|+.+...+.+....+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 222221 0 1111111 12334566778889999999999998876656668888999999999999
Q ss_pred HHHHHHHHHHhcCC-----CCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC-----------Cch---HHHHHHHHH
Q 042039 209 HALKLFEEMQRDDV-----AADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC-----------ELD---IQAYNCLID 269 (376)
Q Consensus 209 ~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~ 269 (376)
+|..++..+..... +++......|.-++...+++++|..+++.+....+ .|+ ......++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999977531 22233357789999999999999999999876322 122 234455677
Q ss_pred HHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhh
Q 042039 270 GLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSK 349 (376)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 349 (376)
.+...|++.+|++.++.+... .|-|......+...+...|.+.+|+..++.+.... +-+..+....+.++...|++++
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 788999999999999999776 67799999999999999999999999998877653 2256677788888999999999
Q ss_pred HHHHHHHHHhC
Q 042039 350 VIELLHKMKEK 360 (376)
Q Consensus 350 a~~~~~~~~~~ 360 (376)
|..+.+++.+.
T Consensus 503 A~~~~~~l~~~ 513 (822)
T PRK14574 503 MELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhh
Confidence 99999888764
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=1.3e-19 Score=146.01 Aligned_cols=262 Identities=18% Similarity=0.201 Sum_probs=106.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhC
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGEN-INPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKN 99 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (376)
.+...+.+.|++++|++++++..... .+.+...|..+.......++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778888899999999986554443 2456667777777888888999999999988876544 56667777776 688
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCcHHHHHHH
Q 042039 100 GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMG-CKHDDVSYNILINGYCKNKEVEEALSL 178 (376)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (376)
+++++|..++....+.. +++..+..++..+...++++++.++++.+.... .+.+...|..++.++.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899888888776653 455667778888888899999988888876532 245667788888888889999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCC
Q 042039 179 YREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCE 258 (376)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (376)
++++++.. +.+......++..+...|+.+++..++....+.. +.++..+..++.++...|+.++|..++++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99988852 3357777888888888888888888888877664 5666777888888888899999999988887765 4
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 259 LDIQAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
.|+.....++.++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4788888888888888998888888877654
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=8.2e-17 Score=139.34 Aligned_cols=342 Identities=16% Similarity=0.165 Sum_probs=168.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENI--NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
|+.+.+.|...+.-.|++..++.+.+.+..... ..-...|..++++|...|++++|...|.+..+....-....+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 455566666666666666666666665554421 112334556666666666666666666555554222113334445
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----cHHHH----------------------------
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG----KINRA---------------------------- 140 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a---------------------------- 140 (376)
.+.+.+.|+++.+...|+.+.+.. +.+..+...++..|...+ ..+.|
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 556666666666666665555542 223344444444444332 22233
Q ss_pred -----HHHHHHH----HhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC---CCCCC------HhHHHHHHHHHH
Q 042039 141 -----EELFGSM----ESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK---GIKPT------VVTYNTLFLGLF 202 (376)
Q Consensus 141 -----~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~ 202 (376)
+.+|..+ ...+.++.+...|+++..+...|++++|...|...... ...++ ..+-..+...+-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 3333322 22333455566666666667777777777777666543 11111 122333444444
Q ss_pred hccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC--------------------------
Q 042039 203 EIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK-------------------------- 256 (376)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------------- 256 (376)
..++.+.|.+.|..+.+.. |.-...|..++......+...+|...++.+...+
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 4445555555555544432 1112222222212222233333333333331111
Q ss_pred ---------CCchHHHHHHHHHHHHh------------CCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHH
Q 042039 257 ---------CELDIQAYNCLIDGLCK------------SGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKA 315 (376)
Q Consensus 257 ---------~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 315 (376)
..+|+.+...|+..|.+ .+..++|+++|.++++. .|.|...-+-++-+++..|++.+|
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A 665 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEA 665 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHH
Confidence 01233333444443321 23355666666666554 344555555566666666666666
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 316 HDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
..+|.++.+... ....+|..+.++|..+|++..|+++|+...++
T Consensus 666 ~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 666 RDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665432 24455666666666666666666666665543
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.9e-15 Score=119.70 Aligned_cols=344 Identities=17% Similarity=0.232 Sum_probs=260.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
+.+..+|..+|.++++-...++|.+++++......+.+..+|+.+|.+-.-. ...++..+|......||..|+|.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4567899999999999999999999999998887788999999998765433 237899999999999999999999
Q ss_pred HHHHHhCCChHH----HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHH-HHHHHHHHHhc----C----CCCChhhH
Q 042039 93 MDELCKNGKMDE----ASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINR-AEELFGSMESM----G----CKHDDVSY 159 (376)
Q Consensus 93 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~----~~~~~~~~ 159 (376)
+.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+++.++..+ +..++.++... . .+.+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56678889999999999999999999998887644 45555555332 1 23344567
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCC----CCCC---HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHH
Q 042039 160 NILINGYCKNKEVEEALSLYREMVSKG----IKPT---VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTF 232 (376)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (376)
...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....++....+.....|+.+...-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888889999999988876655421 3333 334666777788889999999999999988788899999999
Q ss_pred HHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCC-Ch--------H-----HHHHHHh-------cccccC
Q 042039 233 IDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSG-RL--------E-----IALELFR-------SLPRRV 291 (376)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~~-------~~~~~~ 291 (376)
+++....|.++-.-+++.+++..|..........+...+++.+ .. . -|..+++ ++.+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999988877765544444444444444433 11 0 0111111 1222
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC----CCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 042039 292 LVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENA----VAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKV 362 (376)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 362 (376)
........+..+-.+.+.|+.++|.+++..+.+.+ ..|.......++..-.+.+++..|...++-|.+.+.
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 33456677888888999999999999999986542 234444555777777888999999999999876543
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=1e-19 Score=146.64 Aligned_cols=261 Identities=15% Similarity=0.146 Sum_probs=85.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 91 VIMDELCKNGKMDEASRLLDLMVQRD-VRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
.+...+...|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34555666666666666665443332 12234444555555566666666666666666554 3344555555555 566
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhCCCHHHHHHH
Q 042039 170 KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD-VAADTSTYNTFIDGLCKNGYIVEAVEL 248 (376)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (376)
+++++|.+++....+. .+++..+..++..+...++++++..+++.+.... .+.+...+..++..+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6667777666665543 2344555566666666677777777666655432 234455566666667777777777777
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 042039 249 FRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVA 328 (376)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (376)
++++....+. ++.....++..+...|+.+++..++....+. .+.|+..+..++.++...|++++|...|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7777666422 5666666777777777777766666665554 24455566667777777777777777777776643 2
Q ss_pred CcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 329 PNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 329 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
.|+.....+..++.+.|+.++|.++.+++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 266666667777777777777777666654
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.82 E-value=2.5e-16 Score=133.35 Aligned_cols=301 Identities=12% Similarity=0.045 Sum_probs=222.3
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 19 YNTIIDGL--CKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 19 ~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
...+.++. ...|+++.|.+.+.+..+.. +.....+.....+..+.|+++.|.+.+.+..+....+...........+
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 34444443 45799999999999887763 2234455566788899999999999999988764333333444468888
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHH-HHHHHH---HccCcH
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYN-ILINGY---CKNKEV 172 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~ 172 (376)
...|+++.|...++.+.+.. +-+..+...+...+...|++++|.+.+..+.+.+.. +...+. .-...+ ...+..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 446788899999999999999999999999988643 333332 111221 233333
Q ss_pred HHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchH--HHHHHHHHhCCCHHHHHH
Q 042039 173 EEALSLYREMVSKGI---KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTY--NTFIDGLCKNGYIVEAVE 247 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~ 247 (376)
+++.+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+... .+.... ..........++.+.+.+
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-d~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-DDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CcccchhHHHHHhhhcCCCChHHHHH
Confidence 444445555555421 23788889999999999999999999999998752 222211 112222334578889999
Q ss_pred HHHHhcccCCCchH--HHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 248 LFRTLGILKCELDI--QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 248 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
.++...+.. +-++ .....++..+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++...
T Consensus 321 ~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 321 LIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998887765 3366 778899999999999999999999544433568888889999999999999999999998754
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.4e-17 Score=138.59 Aligned_cols=289 Identities=13% Similarity=0.072 Sum_probs=162.7
Q ss_pred ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCcHHHHHHH
Q 042039 66 DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDV--RPNAFTYSTLMDGFCLTGKINRAEEL 143 (376)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 143 (376)
+..+|+..|.++... +.-+..+...+.++|...+++++|.++|+.+.+... --+..+|.+.+..+-+ +-+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345666666664433 222334555566666666666666666666655320 0123444444433211 112222
Q ss_pred H-HHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 042039 144 F-GSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP-TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 144 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
+ +.+.+.. +..+.+|-.++++|.-+++.+.|++.|+++++. .| ...+|+.+..-+.....+|.|...|+..+..+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 2222222 455566666666666666666666666666653 33 45566666666666666666666666665543
Q ss_pred CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHH
Q 042039 222 VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNI 301 (376)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (376)
+-+..+|..++..|.+.++++.|+-.|+.+...++. +......++..+.+.|+.++|+++++++... .+.|+..-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchhHHH
Confidence 334455566666666666666666666666665532 5556666666666666666666666666554 2334555555
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCch
Q 042039 302 MIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDA 366 (376)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 366 (376)
.+..+...+++++|+..++++.+. ++.+...+..+.+.|.+.|+.+.|+.-|--+.+...+++.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 566666666666666666666664 2224455556666666666666666666666654444333
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.8e-17 Score=136.80 Aligned_cols=292 Identities=13% Similarity=0.060 Sum_probs=239.0
Q ss_pred CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC--CCchHhHHHHHHHHHhCCChHHHHH
Q 042039 30 GFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV--QPSVVTFNVIMDELCKNGKMDEASR 107 (376)
Q Consensus 30 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 107 (376)
-+.++|+..|+.+... +..+.++...++.+|...+++++|.++|+.+.+..+ -.+..+|...+..+- +.-+---
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHH
Confidence 4578999999995544 355668889999999999999999999999988632 125667776665432 2222223
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 042039 108 LLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGI 187 (376)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 187 (376)
+-+.+.+.+ +-.+.+|..++.+|..+++.+.|++.|+++.+.+ +....+|..++.-+....++|.|...|+.++...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 334455443 4468999999999999999999999999999986 5578899999999999999999999999988752
Q ss_pred CCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHH
Q 042039 188 KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCL 267 (376)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (376)
+.+-.+|.-++..|.+.++++.|.-.|+++.+.+ |.+......++..+.+.|+.++|+++++++...+.. ++-.-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2245667778899999999999999999999887 667778888899999999999999999999888744 66666777
Q ss_pred HHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH
Q 042039 268 IDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNV 331 (376)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (376)
+..+...+++++|+..++++.+. ++.+...|..++..|.+.|+.+.|+.-|--+.+...++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88888999999999999999886 6667788999999999999999999999988886554433
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.9e-16 Score=126.43 Aligned_cols=350 Identities=17% Similarity=0.148 Sum_probs=238.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC------------C
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ------------P 84 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~ 84 (376)
...+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+.++...|+-++..+.|.+++..... |
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 34555555677889999999999988776 567766667777777888888888889888764222 2
Q ss_pred chHhHHHHH-----HHHHhCC--ChHHHHHHHHHHHhcCCCCCh---------------------hhHHHHHHHHHhcCc
Q 042039 85 SVVTFNVIM-----DELCKNG--KMDEASRLLDLMVQRDVRPNA---------------------FTYSTLMDGFCLTGK 136 (376)
Q Consensus 85 ~~~~~~~l~-----~~~~~~~--~~~~a~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~ 136 (376)
+....+..+ +-.-+.+ +-++++..--+++.--+.|+- ..-..-..-+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 222221111 1111111 111121111111111111110 000112335667777
Q ss_pred HHHHHHHHHHHHhcCCC------------------------------------CChhhHHHHHHHHHccCcHHHHHHHHH
Q 042039 137 INRAEELFGSMESMGCK------------------------------------HDDVSYNILINGYCKNKEVEEALSLYR 180 (376)
Q Consensus 137 ~~~a~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (376)
++.|.+++.-..+..-+ .++.....-.......|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 77777777665443211 111111222222344788999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCch
Q 042039 181 EMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELD 260 (376)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 260 (376)
+.+..+.. .......+...+...|+.++|++.|-++... ...+..++..+...|....++.+|++++-++...- +.|
T Consensus 515 eal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sli-p~d 591 (840)
T KOG2003|consen 515 EALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI-PND 591 (840)
T ss_pred HHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-CCC
Confidence 98876322 3444445556677889999999999887654 24577888889999999999999999999886553 558
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 042039 261 IQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHG 340 (376)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (376)
+..+..++..|-+.|+-.+|.+.+-.--+. +|.+..+...|..-|....-+++++.+|+++.- +.|+..-|..++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 999999999999999999999987765554 778999999999999999999999999999865 68999999988865
Q ss_pred -HhhcCChhhHHHHHHHHHhCCCCCchHHHHHHHhh
Q 042039 341 -FVRINKPSKVIELLHKMKEKKVMPDASIVSMVVDL 375 (376)
Q Consensus 341 -~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 375 (376)
+.+.|++++|.+++++..++ ++-|...+..+++.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri 703 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRI 703 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHH
Confidence 46689999999999998764 66677777766653
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=6e-16 Score=130.34 Aligned_cols=285 Identities=12% Similarity=0.045 Sum_probs=221.7
Q ss_pred hcCChhHHHHHHHHhhhCCCCCChhh-HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhH--HHHHHHHHhCCChHH
Q 042039 28 KEGFVDKAKALFLQMKGENINPDVVT-YNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTF--NVIMDELCKNGKMDE 104 (376)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 104 (376)
-.|++++|.+.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+.... ......+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766542 23333 333355658999999999999999875 4444322 244678899999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHccCcHHHHHH
Q 042039 105 ASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDV-------SYNILINGYCKNKEVEEALS 177 (376)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~ 177 (376)
|...++++.+.. +-++.....+...|.+.|++++|.+++..+.+....++.. +|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999875 4468888999999999999999999999999876432221 22333333344455566666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC
Q 042039 178 LYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC 257 (376)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (376)
+++.+.+. .+.++.....+...+...|+.++|.+.+++..+. +++.... ++.+....++++++.+..+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66665443 3557888899999999999999999999999874 4444322 23344466999999999999887764
Q ss_pred CchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 258 ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
-|+..+..++..+.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++....
T Consensus 326 -~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 -DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 47888999999999999999999999999874 689999999999999999999999999988653
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.2e-15 Score=116.28 Aligned_cols=291 Identities=16% Similarity=0.195 Sum_probs=229.2
Q ss_pred cCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCcHHH
Q 042039 63 HANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN---AFTYSTLMDGFCLTGKINR 139 (376)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 139 (376)
-.++.++|.+.|-+|.+.... +..+...|.+.+.+.|..+.|+++.+.+.++..-+. ......+.+-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 356889999999999885322 566677888999999999999999999987521111 3355677888999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhccchHHHHHHHH
Q 042039 140 AEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT----VVTYNTLFLGLFEIHQVEHALKLFE 215 (376)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (376)
|+.+|..+.+.+ ..-..+...|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....++++|...+.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998865 45667888899999999999999999999988654443 3456777777778889999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCC
Q 042039 216 EMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVAD 295 (376)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (376)
+..+.+ +....+-..+++.....|+++.|++.++.+.+.++..-+.+...+..+|.+.|+.++...++..+.+.. +.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 998886 556777778889999999999999999999988776667888999999999999999999999988753 34
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh---cCChhhHHHHHHHHHhC
Q 042039 296 VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR---INKPSKVIELLHKMKEK 360 (376)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 360 (376)
...-..+...-....-.+.|...+.+-+.. +|+...+..++..... -|...+-+..+++|...
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444455555555556667777666665553 6899999999886654 34567777888888754
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=5.5e-16 Score=134.31 Aligned_cols=348 Identities=13% Similarity=0.057 Sum_probs=222.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCC----ChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAN----DWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
+.-+...+.+.|+++.+...|+.+.... |.+..+...|+..|...+ ..+.|..++.+..+.- +.|...|..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4456677888888888888888877765 556677777777776664 4455555555555442 224555555554
Q ss_pred HHHhCCChHHHHHHHHHHH----hcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCC------CChhhHHH
Q 042039 95 ELCKNGKMDEASRLLDLMV----QRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESM---GCK------HDDVSYNI 161 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~ 161 (376)
.+....-+.. +.+|..+. ..+..+.+...+.++..+...|++..|...|...... ... ++..+-.+
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 4443332222 44444333 2222344455555555555556655555555555433 001 11112333
Q ss_pred HHHHHHccCcHHHHHHHHH----------------------------------HHHHCCCCCCHhHHHHHHHHHHhccch
Q 042039 162 LINGYCKNKEVEEALSLYR----------------------------------EMVSKGIKPTVVTYNTLFLGLFEIHQV 207 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~----------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (376)
+..++-..++.+.|.+.|. ..... ...++..+..+...+.....+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhh
Confidence 4444444444444444444 44433 222444455555556666666
Q ss_pred HHHHHHHHHHHhcC-CCCCcchHHHHHHHHHh------------CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhC
Q 042039 208 EHALKLFEEMQRDD-VAADTSTYNTFIDGLCK------------NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKS 274 (376)
Q Consensus 208 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (376)
..|.+-|..+.+.- ..+|+.+...|+..|.+ .+..++|+++|.++.... +.+...-+.++.+++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 66666555554431 12344445555554442 345788999999988876 34788889999999999
Q ss_pred CChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCChhhHHHH
Q 042039 275 GRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN-AVAPNVIIFVTLIHGFVRINKPSKVIEL 353 (376)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 353 (376)
|++.+|..+|.+..+. ......+|..++++|..+|+|..|+++|+...+. ....+..+...|.+++.+.|++.+|.+.
T Consensus 660 g~~~~A~dIFsqVrEa-~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREA-TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHH-HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999876 3346778999999999999999999999998765 4455788899999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHH
Q 042039 354 LHKMKEKKVMPDASIVSMV 372 (376)
Q Consensus 354 ~~~~~~~~~~p~~~~~~~l 372 (376)
+.......+.-....++..
T Consensus 739 ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHhCCccchHHhHHH
Confidence 9998877665555566543
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.6e-16 Score=122.67 Aligned_cols=291 Identities=12% Similarity=0.070 Sum_probs=179.2
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--CchHhHHHHHHHHHhCCC
Q 042039 24 DGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 101 (376)
.++....+.++++.-.+.....|.+.+...-+..+.+.....++++|+.+|+++.+..+- .|..+|..++- .+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 344445566666666666676666655555555566666667777777777777765221 13445554432 22211
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 042039 102 MDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYRE 181 (376)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (376)
..+.++.+-.-.-.+-.+.|+..+++-|.-.++.++|...|++..+.+ |....+|..+++-|....+...|++.|+.
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 112222221111112234566667777777777777777777777776 55666777777777777777777777777
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchH
Q 042039 182 MVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDI 261 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 261 (376)
+++- .+.|-..|-.++++|.-.+.+.=|+-.|++..... |.|+..+..++.+|.+.++.++|++.|+++...+ ..+.
T Consensus 390 Avdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 7775 34466777777777777777777777777777664 5667777777777777777777777777776655 2255
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhccccc----C-CCC-CHHHHHHHHHHHHccCChhHHHHHHHHH
Q 042039 262 QAYNCLIDGLCKSGRLEIALELFRSLPRR----V-LVA-DVVTYNIMIHGLCNDGQMDKAHDLFLDM 322 (376)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (376)
..+..++..|.+.++.++|.+.|.+.++. | ..| .......|..-+.+.+++++|.......
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 67777777777777777777777665432 1 111 1222333555556666666665544433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.5e-15 Score=117.42 Aligned_cols=351 Identities=12% Similarity=0.055 Sum_probs=224.1
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHH-----------------------------HHh
Q 042039 12 CKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIH-----------------------------GLC 62 (376)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----------------------------~~~ 62 (376)
...|+..+......+.+.|....|++.|......- |-.-.+|..|.. ++.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 34455566666666778888888888888776542 333333333222 222
Q ss_pred cCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCcHHHH
Q 042039 63 HANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVR--PNAFTYSTLMDGFCLTGKINRA 140 (376)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 140 (376)
...+.+++.+-.+.....|.+-+...-+..+.+.....++++|+..|+++.+.++- .|..+|..++-.-... .+.
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~---skL 315 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK---SKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh---HHH
Confidence 22344444444455555555444444444445555566666666666666655210 1233444333221111 111
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 141 EELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
.-+-+.....+ +-.+.+...+++.|.-.++.++|...|++.++.+ +.....|..++.-|....+...|+..++.+++.
T Consensus 316 s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 316 SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 11111111111 2344555666777777888888999998888853 224677888888888888888999999888887
Q ss_pred CCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHH
Q 042039 221 DVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYN 300 (376)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (376)
+ |.|...|..++++|.-.+.+.-|.-.|+++.... +-|+..|..|+.+|.+.++.++|++.|..+...+. .+...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHH
Confidence 6 6688888889999988888888888888888776 44788889999999999999999999988877643 3567888
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc----C-CCC-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHHH
Q 042039 301 IMIHGLCNDGQMDKAHDLFLDMEEN----A-VAP-NVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMVV 373 (376)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 373 (376)
.++..|-+.++..+|...|++.++. | +.| ......-|..-+.+.+++++|.......... .+...--+.++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~Ll 547 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 8888888888988888888877652 2 223 2223333556677788888887766655433 44444444443
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=3.5e-15 Score=117.23 Aligned_cols=292 Identities=13% Similarity=0.126 Sum_probs=237.1
Q ss_pred cCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHH
Q 042039 63 HANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEE 142 (376)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 142 (376)
..|+|.+|++...+..+.+.. ....|..-+++.-..|+.+.+-.++.++-+....++........+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 468999999999998877655 3455666677888899999999999999886445567777788889999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-------HhHHHHHHHHHHhccchHHHHHHHH
Q 042039 143 LFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT-------VVTYNTLFLGLFEIHQVEHALKLFE 215 (376)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (376)
-+.++...+ +.++.+......+|.+.|++.....++..+.+.+.-.+ ..+|..++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999887 77888999999999999999999999999999876555 3455666666666666666566666
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCC
Q 042039 216 EMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVAD 295 (376)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (376)
...+. .+.++..-..++.-+.++|+.++|.++.++..+....|. . .....+.+.++.+.-++..++..+. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 66544 356777888889999999999999999999988876554 2 2223456778888888888776655 5567
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCC
Q 042039 296 VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMP 364 (376)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 364 (376)
+..+..++..|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|++.+|.+..++....-..|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999988874 7899999999999999999999999999876443333
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=5.7e-15 Score=127.24 Aligned_cols=344 Identities=16% Similarity=0.135 Sum_probs=269.9
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH
Q 042039 12 CKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV 91 (376)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (376)
.+.+...|..|...|-+.|+.+++...+-.+...+ |.|...|..+.....+.|.+++|.-+|.++++..+. +...+..
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~e 246 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYE 246 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHH
Confidence 35677899999999999999999999988777665 678899999999999999999999999999998543 6666666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCChhhHHHHHHHH
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQRDVRPNA----FTYSTLMDGFCLTGKINRAEELFGSMESMG-CKHDDVSYNILINGY 166 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 166 (376)
-...|-+.|+...|.+.|.++.+...+.+. .....++..+...++-+.|.+.++.....+ -..+...++.++..+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 778899999999999999999987532222 233445667777888899999998887632 234556788999999
Q ss_pred HccCcHHHHHHHHHHHHHCC---------------------------CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHh
Q 042039 167 CKNKEVEEALSLYREMVSKG---------------------------IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQR 219 (376)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (376)
.+...++.+........... ..++..+ ..+.-++.+.+..+....+......
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHH
Confidence 99999999999888877621 1222222 2344455666666666666666666
Q ss_pred cC--CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHH
Q 042039 220 DD--VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVV 297 (376)
Q Consensus 220 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 297 (376)
.+ +..+...|..+..++...|++.+|+.++..+......-+...|..++++|...|.+++|.+.|+.++.. .|.+..
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D 484 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-APDNLD 484 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCchh
Confidence 65 334566899999999999999999999999987655556789999999999999999999999999876 455677
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH--------cCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEE--------NAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.-..|...+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+.++-+..-..|+.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 777888999999999999999998542 23556666666677788889998886666555543
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=1.3e-14 Score=114.13 Aligned_cols=299 Identities=12% Similarity=0.079 Sum_probs=238.9
Q ss_pred HHHHHH--hcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhC
Q 042039 22 IIDGLC--KEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKN 99 (376)
Q Consensus 22 l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (376)
+.++.. -.|+|.+|+++..+..+.+ +.....|..-+.+.-+.|+.+.+-.++.++.+....++....-...+.....
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 444444 3699999999999988776 4445667777788889999999999999998875566777778888899999
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHccCcH
Q 042039 100 GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDV-------SYNILINGYCKNKEV 172 (376)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~ 172 (376)
|+...|..-+.++.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+.. +|..++.-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999886 4467888999999999999999999999999988655543 566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 173 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
+.-...++...++ .+-++..-..++.-+.++|+.+.|.++..+..+.+..+. . .....+.+.++...-++..+..
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHH
Confidence 6655566665544 455677778888999999999999999999998865554 2 2223456778888877777776
Q ss_pred cccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 042039 253 GILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN 330 (376)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (376)
.... +.++..+..++..|.+.+.|.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++....-.+|+
T Consensus 321 l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 321 LKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 6554 33678999999999999999999999998776 478999999999999999999999999998875433333
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.2e-15 Score=119.10 Aligned_cols=331 Identities=17% Similarity=0.149 Sum_probs=185.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc-hHhHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPD-VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS-VVTFNVIMDE 95 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 95 (376)
.+-...+-|.++|++++|++.|.+.+.. .|+ +..|.....+|...|+|+++.+...+.++. .|+ +..+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 4555667789999999999999999987 566 888999999999999999999988888775 333 3344444555
Q ss_pred HHhCCChHHHHHHH------------------HHHH------------h-cC--CCCChhhHHHHHHHH-----------
Q 042039 96 LCKNGKMDEASRLL------------------DLMV------------Q-RD--VRPNAFTYSTLMDGF----------- 131 (376)
Q Consensus 96 ~~~~~~~~~a~~~~------------------~~~~------------~-~~--~~~~~~~~~~l~~~~----------- 131 (376)
+-..|++.+|+.-. ++.+ + .+ +-|......+....+
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 55556655543211 1111 0 01 111211111111111
Q ss_pred ----------------------------------------------------------------HhcCcHHHHHHHHHHH
Q 042039 132 ----------------------------------------------------------------CLTGKINRAEELFGSM 147 (376)
Q Consensus 132 ----------------------------------------------------------------~~~~~~~~a~~~~~~~ 147 (376)
.-.|+.-.|.+-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 1123333333444444
Q ss_pred HhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcc
Q 042039 148 ESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTS 227 (376)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 227 (376)
+... +.+...|..+..+|...++.++....|....+.+ +-++.+|..-.+...-.++++.|..-|++.+..+ +.+..
T Consensus 353 I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~ 429 (606)
T KOG0547|consen 353 IKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAY 429 (606)
T ss_pred HhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhH
Confidence 4332 2222235555555666666666666666655542 2245556556666666666666666666665553 33444
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCC-----CCHHH--HH
Q 042039 228 TYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLV-----ADVVT--YN 300 (376)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~--~~ 300 (376)
.|..+.-+..+.+.++++...|+.....- +..+..|+..+..+...+++++|.+.|+..++.... .++.. .-
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 45555555556666666666666655442 324556666666666666666666666655442100 01111 11
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 301 IMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
.++ .+.-.+++..|..++.++.+.+.+ ....+..|...-.+.|+.++|+++|++..
T Consensus 509 a~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 509 ALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 111235666666666666664322 34556777777777788888888877654
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=7.7e-14 Score=116.46 Aligned_cols=336 Identities=13% Similarity=0.057 Sum_probs=261.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
-.+|+.-.+.|.+.+-++-|+.+|...++.- +.+...|......--..|..++-..+++++...- +-....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Confidence 4578888888888888888888888888764 5567778877777777888888888888888763 3245566666677
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
+-..|+...|..++.+..+.. +.+...|...+..-....+++.|..+|.+.... .++..+|..-+....-.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 777899999999998888864 336778888888888888999999999888775 57778888878887888889999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 176 LSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
++++++.++. ++.-...|..+.+.+-+.++.+.|...|..-.+. .|.....+..+...--+.|.+-.|..++++....
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9999888885 4444677888888888888888888888877665 3556667777778778888899999999988777
Q ss_pred CCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc----C-------------------------CCCCHHHHHHHHHHH
Q 042039 256 KCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR----V-------------------------LVADVVTYNIMIHGL 306 (376)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-------------------------~~~~~~~~~~l~~~~ 306 (376)
++. +...|...+++-.+.|+.+.|..++.++++. | ...|+.+...+...|
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 643 7888888899989999988888877665443 0 223555666677777
Q ss_pred HccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 307 CNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
....++++|.+.|.+.++.+.. +..+|..+...+.++|.-+.-.+++++....
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 7788888888888888876432 5678888888888888888888888887653
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.4e-14 Score=109.42 Aligned_cols=299 Identities=15% Similarity=0.146 Sum_probs=228.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc---hHhHHHHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS---VVTFNVIMDE 95 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 95 (376)
|..=++.+ -+.+.++|.++|-+|.+.. +.+.++...|...+.+.|..+.|+.+.+.+.++..-+. ......|.+-
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 44434433 4568999999999999865 66778889999999999999999999999987521111 2345567788
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCc
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDD----VSYNILINGYCKNKE 171 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 171 (376)
|...|-++.|+.+|..+.+.+ .--......++..|-...+|++|+++-+++...+..+.. ..|--+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999998864 334677889999999999999999999999887633321 244556666667889
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHH
Q 042039 172 VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRT 251 (376)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (376)
.+.|...+.+..+.+ +.+...-..+.......|+++.|.+.++.+.+.+..--+.+...+..+|.+.|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999863 3345556677888999999999999999999988666778899999999999999999999999
Q ss_pred hcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHc---cCChhHHHHHHHHHHHc
Q 042039 252 LGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCN---DGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 325 (376)
+.+.... ...-..+........-.+.|...+.+-+++ .|+...+..++..-.. .|...+-..++++|...
T Consensus 275 ~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 275 AMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8876433 334444444444445566666666555543 6899999999887654 34466667777777643
No 47
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=4.7e-14 Score=112.03 Aligned_cols=321 Identities=17% Similarity=0.233 Sum_probs=241.0
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL 127 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (376)
|.+..++..+|.++++--..+.|.+++++......+.+..+||.++.+..-... .+++.+|......||..|++.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 556789999999999999999999999999888788899999999886543322 7889999999999999999999
Q ss_pred HHHHHhcCcHHH----HHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHH-HHHHHHHHHHC----CC----CCCHhHH
Q 042039 128 MDGFCLTGKINR----AEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE-ALSLYREMVSK----GI----KPTVVTY 194 (376)
Q Consensus 128 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~ 194 (376)
+.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+.+.++..+ +..++.++... .+ +.+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56778889999999999999999999999888754 55555555442 12 2245567
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcC----CCCC---cchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHH
Q 042039 195 NTLFLGLFEIHQVEHALKLFEEMQRDD----VAAD---TSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCL 267 (376)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (376)
...+..|.+..+.+.|.++..-..... +.++ ..-|..+..+.++....+.-..+|+.++..-.-|++.+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 777888889999998888776654331 1222 123556677778888899999999999988888899999999
Q ss_pred HHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccC-Ch--------hH-----HHHHHH-------HHHHcC
Q 042039 268 IDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDG-QM--------DK-----AHDLFL-------DMEENA 326 (376)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~~-------~~~~~~ 326 (376)
+++..-.+.++-..++|..+...|...+...-..+...+++.+ .. .. |..+++ ++..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999988775555555555555555544 11 11 111211 1222
Q ss_pred CCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC-CCCCchHHHHHHHh
Q 042039 327 VAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK-KVMPDASIVSMVVD 374 (376)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~ 374 (376)
........+..+-.+.+.|..++|.+++.-+.++ .-.|-....+++++
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 2334555667777788999999999999999655 34455555554443
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=2.2e-13 Score=113.84 Aligned_cols=315 Identities=11% Similarity=0.018 Sum_probs=222.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
+...|...+..--..|..++-..+|+++...- |.....|......+-..|+...|..++.++.+.... +...|...+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44556666665556677777777777777552 445556666666677778888888888777776444 6667777777
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE 174 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (376)
......++++|..+|.+.... .|+..+|..-+..-...+..++|.+++++..+. +|.-...|..++..+-+.++.+.
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHH
Confidence 777777788888887777664 456677776666666777778888887777765 24445567777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 042039 175 ALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGI 254 (376)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (376)
|...|..-.+. ++-....|..+...--+.|++-+|..++++..-.+ |.+...|...+++-.+.|..+.|..+..++..
T Consensus 704 aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 704 AREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777766654 45456666666666667777777777777776665 55667777777777777777777766655522
Q ss_pred cC-----------------------------CCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHH
Q 042039 255 LK-----------------------------CELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHG 305 (376)
Q Consensus 255 ~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (376)
.- +.-|+.+...++..+....++++|.+.|.+..+. .+.+..+|..+...
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~-d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK-DPDNGDAWAWFYKF 860 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCccchHHHHHHHH
Confidence 11 1235666777888888889999999999999887 45567899999999
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 042039 306 LCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLI 338 (376)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (376)
+...|.-+.-.+++.+.....+. ....|..+-
T Consensus 861 el~hG~eed~kev~~~c~~~EP~-hG~~W~avS 892 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETAEPT-HGELWQAVS 892 (913)
T ss_pred HHHhCCHHHHHHHHHHHhccCCC-CCcHHHHHh
Confidence 99999999999999988875322 234454443
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.6e-14 Score=115.69 Aligned_cols=279 Identities=13% Similarity=0.136 Sum_probs=210.8
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhc--CCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCCh
Q 042039 25 GLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCH--ANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKM 102 (376)
Q Consensus 25 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (376)
.+.++|+++.|++++.-+.+.+.+....+-+.|-..+.- -.++.+|.++-+..+... .-+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 477899999999998887766534333344444333333 347888888887776542 22444444444555677899
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 103 DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
++|.+.|++.+..+. ........+...+-..|++++|+++|-++...- ..+..+...+...|....++.+|++++-+.
T Consensus 507 dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999987642 233444555666778899999999998876542 457778888899999999999999999887
Q ss_pred HHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHH
Q 042039 183 VSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQ 262 (376)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (376)
... ++.++.+...+...|-+.|+..+|.+.+-+--+. ++.+..+...+...|....-+++++.+|+++.-. .|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHH
Confidence 775 6667888999999999999999999887766554 4778888999999999999999999999987544 67877
Q ss_pred HHHHHHHHH-HhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC
Q 042039 263 AYNCLIDGL-CKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ 311 (376)
Q Consensus 263 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (376)
-|..++..| .+.|++.+|.++|+...+. +|.|......|++.+...|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 787776554 5679999999999998776 78888888888888877663
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4e-14 Score=116.05 Aligned_cols=284 Identities=14% Similarity=0.096 Sum_probs=206.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (376)
+.........-+...+++.+..++.+.+.+. .+++...+..-+.++...|+..+-..+=.++++.. +..+.+|..++-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 4445555566677778888888888888776 34456666666667888888887777777777763 445778888888
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHH
Q 042039 130 GFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEH 209 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (376)
.|.-.|..++|.++|.+....+ +.-...|..++..|.-.+..++|...|..+-+. ++-...-+.-+..-|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 8888888888888888887765 445567888888888888888888888877764 22222223344556777888888
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc----CC--CchHHHHHHHHHHHHhCCChHHHHHH
Q 042039 210 ALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL----KC--ELDIQAYNCLIDGLCKSGRLEIALEL 283 (376)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (376)
|.+.|....... |.++..++.++......+.+.+|..+|+..... .. ..-..+++.++.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888888887764 667777788877777788888888888776511 00 11345678888888888888888888
Q ss_pred HhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 042039 284 FRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF 341 (376)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (376)
+++.+.. .+.+..++..++-.|...|+++.|++.|.+.+- +.|+-.+...++..+
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 8887766 566788888888888888888888888888776 456665555555543
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=7.7e-15 Score=112.33 Aligned_cols=230 Identities=13% Similarity=0.044 Sum_probs=203.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 042039 125 STLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI 204 (376)
Q Consensus 125 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (376)
..+.++|.+.|.+.+|.+.++..... .|-+.+|..|...|.+..+++.|+.++.+-++. .+.+........+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57899999999999999999998876 577889999999999999999999999999886 555666667788889999
Q ss_pred cchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 042039 205 HQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELF 284 (376)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (376)
++.++|.++++.+.+.+ +.+.+....+...|.-.++++-|...|+++...|.. ++..|+.++-+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999886 667888888888899999999999999999999976 8999999999999999999999999
Q ss_pred hcccccCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 285 RSLPRRVLVAD--VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 285 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
+++...-..|+ ..+|..+.......|++..|.+.|+-.+.++.. +...++.|.-.-.+.|+.++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 98876533343 568999999999999999999999999887533 6788999988889999999999999998754
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.69 E-value=9e-14 Score=122.36 Aligned_cols=269 Identities=13% Similarity=0.059 Sum_probs=191.6
Q ss_pred CCChhhHHHHHHHHhc-----CCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH---------hCCChHHHHHHHHHHH
Q 042039 48 NPDVVTYNSLIHGLCH-----ANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC---------KNGKMDEASRLLDLMV 113 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 113 (376)
+.+...|...+.+... .+++++|...|++.++..+. +...|..+..++. ..+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3455555555544321 23577999999999986433 4556666665544 2245899999999999
Q ss_pred hcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhH
Q 042039 114 QRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVT 193 (376)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (376)
+.+ +.+...+..+...+...|++++|...|+++.+.+ |.+...+..++.++...|++++|+..++++.+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 4467888888999999999999999999999886 667788999999999999999999999999986322 2333
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHh
Q 042039 194 YNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCK 273 (376)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (376)
+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...+.++.... +.+......+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 344455577789999999999998876433355567888889999999999999999876543 2244555666667777
Q ss_pred CCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 274 SGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
.| ++|...++.+.+.. .-.......+...+.-.|+.+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESE-QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHh-hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77 47777777765431 11111122244556666777776666 777764
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=5.2e-15 Score=113.23 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=167.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL 133 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (376)
-+.+..+|.+.|-+.+|.+.++..++. .|.+.||..|.+.|.+..+++.|+.++.+.++. .+-++.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356777888888888888888777765 556677777778888888888888888777765 23345445567777777
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHH
Q 042039 134 TGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKL 213 (376)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (376)
.++.++|.++|+...+.. +.++.+...+...|.-.++++-|+.+|+++++.|+. ++..|..+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 788888888888777664 556666666777777778888888888888887765 667777777777778888888777
Q ss_pred HHHHHhcCCCC--CcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 214 FEEMQRDDVAA--DTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 214 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
|.+....-..| ...+|..+.......||+..|.+.|+-....+.. +...++.++..-.+.|+.++|..+++.+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77776543222 3446777777777778888888888777766533 5677777777777888888888888776543
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=1.4e-13 Score=121.13 Aligned_cols=267 Identities=15% Similarity=0.089 Sum_probs=192.3
Q ss_pred chHhHHHHHHHHHh-----CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH---------hcCcHHHHHHHHHHHHhc
Q 042039 85 SVVTFNVIMDELCK-----NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFC---------LTGKINRAEELFGSMESM 150 (376)
Q Consensus 85 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 150 (376)
+...|...+++... .+++++|..++++.++.+ +.+...+..+..++. ..+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555554322 234679999999999874 334566666665554 234589999999999988
Q ss_pred CCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHH
Q 042039 151 GCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYN 230 (376)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 230 (376)
+ |.+..++..+..++...|++++|...++++++.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHH
Confidence 6 6788889999999999999999999999999863 3357778888999999999999999999999875 33333444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccC
Q 042039 231 TFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDG 310 (376)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (376)
.++..+...|++++|+..++++.....+.++..+..++.++...|++++|...+.++... .+.+....+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH
Confidence 455567778999999999999876543335666788888999999999999999887654 2334445566666777777
Q ss_pred ChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 311 QMDKAHDLFLDMEENA-VAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 311 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
++|...++.+.+.. ..+....+ +...|.-.|+.+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47777777766431 12222222 33445557787777776 8887653
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=1.2e-13 Score=108.89 Aligned_cols=198 Identities=13% Similarity=0.020 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+..++..+...|++++|.+.++++++... .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455555555555555555555555554321 134444555555555555555555555555442 2233444455555
Q ss_pred HHhcCcHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHH
Q 042039 131 FCLTGKINRAEELFGSMESMGC-KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEH 209 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (376)
+...|++++|.+.++++..... +.....+..++.++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555544311 1223344445555555566666666665555531 2234445555555555566666
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 210 ALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
|...+++..... +.+...+..++..+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666555555442 333444444555555556666665555544
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.5e-13 Score=111.54 Aligned_cols=282 Identities=12% Similarity=0.035 Sum_probs=231.9
Q ss_pred chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 85 SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILIN 164 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (376)
++........-+...+++.+..++.+.+.+.. ++....+..-+.++...|+..+-..+=.++.+.- |..+.+|..++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44445555667778899999999999999875 6666777777778889999888888888888764 778889999999
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHH
Q 042039 165 GYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVE 244 (376)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (376)
.|...|+.++|.+.|.+....+. .-...|..++..+.-.+..++|+..+..+.+.- +-....+..++.-|.+.+..+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 99999999999999999877422 125678889999999999999999998887652 3344445666777889999999
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccC------CCCCHHHHHHHHHHHHccCChhHHHHH
Q 042039 245 AVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV------LVADVVTYNIMIHGLCNDGQMDKAHDL 318 (376)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 318 (376)
|.+.|..+.... |.|+...+.++-+....+.+.+|..+|+..+..- .+....+++.++++|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999988766 4588999999999889999999999998865210 112455789999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHHHh
Q 042039 319 FLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMVVD 374 (376)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 374 (376)
+++.+... +.+..++..+.-.|...|+++.|.+.|.+.. .+.|+..+.+.+|+
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 99999874 3488999999999999999999999999987 57899888777765
No 57
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.7e-11 Score=99.07 Aligned_cols=341 Identities=9% Similarity=0.078 Sum_probs=231.1
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-CC-CCchHhH
Q 042039 12 CKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ-GV-QPSVVTF 89 (376)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~ 89 (376)
..|+..+|.+.|..=.+...++.|..++++..-. .|++.+|...+..=-+.|...-|..+|+.+++. |- ..+...+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4566666666666666666666666666666544 466666666666666666666666666666553 10 0112233
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCcHHHHHHH--------HHHHHhcCCCCChhhH
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQRDVRPN--AFTYSTLMDGFCLTGKINRAEEL--------FGSMESMGCKHDDVSY 159 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~ 159 (376)
...+..-..+..++.|..+|+-.++. ++.+ ...|..+...--+.|+....... ++.....+ |.+-.+|
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsW 325 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHH
Confidence 33333334455666666666666654 2222 23344444433444554433332 33444444 5677788
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH--hHHHHHH-----HHH---HhccchHHHHHHHHHHHhcCCCCCcchH
Q 042039 160 NILINGYCKNKEVEEALSLYREMVSKGIKPTV--VTYNTLF-----LGL---FEIHQVEHALKLFEEMQRDDVAADTSTY 229 (376)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~-----~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (376)
...+..-...|+.+...++|++++.. ++|-. ..|...+ .++ ....+.+.+.++++..++. +|....++
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 88888888899999999999999986 55531 1222222 111 3567899999999998884 45555665
Q ss_pred HHHHHH----HHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHH
Q 042039 230 NTFIDG----LCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHG 305 (376)
Q Consensus 230 ~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (376)
..+-.. -.++.+...|.+++..++.. -|...+|...+..-.+.++++.+..++++.++. .|.+..+|...+..
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-SPENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-ChHhhHHHHHHHHH
Confidence 554444 45788999999999997654 567788999999999999999999999999987 45577888888888
Q ss_pred HHccCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 306 LCNDGQMDKAHDLFLDMEENA-VAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
=...|+.+.|..+|.-+++.. .......|...+..-...|.+++|..+++++.+..
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 889999999999999998752 22234556777777778999999999999998764
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.64 E-value=3.8e-13 Score=106.07 Aligned_cols=198 Identities=12% Similarity=0.046 Sum_probs=110.4
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLC 237 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (376)
.+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..++..+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555544431 2233444444555555555555555555554443 223344455555555
Q ss_pred hCCCHHHHHHHHHHhcccCC-CchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHH
Q 042039 238 KNGYIVEAVELFRTLGILKC-ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAH 316 (376)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 316 (376)
..|++++|...++++..... +.....+..++..+...|++++|...+.+.... .+.+...+..++..+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHHHH
Confidence 55666666665555543221 112344555666666777777777777766654 2334556666777777777777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 317 DLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
..++++.+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777776665 233455555566666677777777777666543
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3e-12 Score=103.51 Aligned_cols=219 Identities=17% Similarity=0.169 Sum_probs=175.5
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHH
Q 042039 100 GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLY 179 (376)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 179 (376)
|+.-.|..-|+..++.... +...|..+..+|....+.++..+.|..+.+.+ |.++.+|..-+..+.-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554322 23347778889999999999999999999987 778899999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCC-
Q 042039 180 REMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCE- 258 (376)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 258 (376)
++.++.. +.+...|..+.-+..+.+.++++...|++.++. .|..+..|+..+..+...+++++|.+.|+.+.+....
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 9999852 335777888888889999999999999999887 5778899999999999999999999999998766432
Q ss_pred ------chHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 259 ------LDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 259 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
+.+.+.-.++. +.-.+++..|..+++++.+. .|.....+..|+..-.+.|+.++|+++|++...
T Consensus 496 ~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~-Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL-DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc-CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11222222222 22458999999999999886 344567899999999999999999999998865
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=4.6e-11 Score=102.10 Aligned_cols=295 Identities=17% Similarity=0.114 Sum_probs=213.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhC-
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKN- 99 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 99 (376)
-....+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.++. +..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhc
Confidence 3446678899999999999876544 3445677788899999999999999999999998543 455555555555222
Q ss_pred ----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHH
Q 042039 100 ----GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKIN-RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE 174 (376)
Q Consensus 100 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (376)
.+.+....+|+++...- |.......+.-.+.....+. .+..++......|+| .+|..+-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 35778888999887753 44444333333333333343 455666777777754 457777777776655555
Q ss_pred HHHHHHHHHHC----C----------CCCCH--hHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 042039 175 ALSLYREMVSK----G----------IKPTV--VTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK 238 (376)
Q Consensus 175 a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (376)
..+++...... + -+|+. .++..+...|...|++++|..++++.+... |..+..|..-++.+-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 55666655432 1 12333 244566788889999999999999999875 4457788999999999
Q ss_pred CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHH------HH--HHHHHHHHccC
Q 042039 239 NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVV------TY--NIMIHGLCNDG 310 (376)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~~ 310 (376)
.|++.+|.+.++.+...+.. |...-+..+..+.+.|+.++|.+++..+.+.+..|... .| ...+.+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888744 77888888899999999999999999987765433221 22 34567899999
Q ss_pred ChhHHHHHHHHHHH
Q 042039 311 QMDKAHDLFLDMEE 324 (376)
Q Consensus 311 ~~~~a~~~~~~~~~ 324 (376)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999888877654
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=1.9e-11 Score=104.44 Aligned_cols=299 Identities=16% Similarity=0.110 Sum_probs=211.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
+........+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.+ +.|..-|..+..+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 34444566778999999999999886554 44456677788899999999999999999999985 33444455555554
Q ss_pred Hhc-----CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcc
Q 042039 132 CLT-----GKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV-EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH 205 (376)
Q Consensus 132 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (376)
... .+.+...++|+++...- |...+...+.-.+.....+ ..+..++..++.+|+|+ +|..+-..|....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 222 35778888998887653 3333333333333332333 34555667777777653 4555555555555
Q ss_pred chHHHHHHHHHHHhc----C----------CCCCc--chHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHH
Q 042039 206 QVEHALKLFEEMQRD----D----------VAADT--STYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLID 269 (376)
Q Consensus 206 ~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (376)
...-..+++...... + -+|.. .++..+...|...|++++|..+++.++... |..+..|..-++
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 555555555554332 1 12222 355777888999999999999999998886 335889999999
Q ss_pred HHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH------H--HHHHHHHH
Q 042039 270 GLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVI------I--FVTLIHGF 341 (376)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~--~~~l~~~~ 341 (376)
.+.+.|++.+|...++.+... ..-|...-+..+..+.+.|+.++|.+++......+..|... . ......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~L-D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEAREL-DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhC-ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876 33466667778888999999999999999987765433221 2 24446789
Q ss_pred hhcCChhhHHHHHHHHHh
Q 042039 342 VRINKPSKVIELLHKMKE 359 (376)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~ 359 (376)
.+.|++..|++.|..+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999988877654
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.59 E-value=1.3e-12 Score=110.05 Aligned_cols=238 Identities=18% Similarity=0.146 Sum_probs=180.0
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-----C-C
Q 042039 121 AFTYSTLMDGFCLTGKINRAEELFGSMESM-------GCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK-----G-I 187 (376)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~ 187 (376)
..+...+...|...|+++.|+.+++...+. ..+.=....+.+...|...+++++|..+|++++.. | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 556777999999999999999999988765 21212223455888999999999999999998763 2 1
Q ss_pred CC-CHhHHHHHHHHHHhccchHHHHHHHHHHHhc-----CC-CC-CcchHHHHHHHHHhCCCHHHHHHHHHHhcccC---
Q 042039 188 KP-TVVTYNTLFLGLFEIHQVEHALKLFEEMQRD-----DV-AA-DTSTYNTFIDGLCKNGYIVEAVELFRTLGILK--- 256 (376)
Q Consensus 188 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 256 (376)
.| -..++..|...|.+.|++++|...++.+.+. +. .+ -...+..++..+...+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2567788888999999999999888876543 10 11 12346777788889999999999888763311
Q ss_pred CC----chHHHHHHHHHHHHhCCChHHHHHHHhcccccC-------CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 257 CE----LDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV-------LVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 257 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
+. .-..++..++..|...|++++|.+++++++... ..-....++.+...|.+.+++.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11 125688999999999999999999999876431 1222457788999999999999999999887532
Q ss_pred ----CCC-C-cHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 326 ----AVA-P-NVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 326 ----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
|+. | ...+|..|...|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 321 2 34679999999999999999999988876
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.5e-10 Score=93.67 Aligned_cols=160 Identities=9% Similarity=0.062 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
.|-.....=..++++..|.++|++.+..+ ..+...|...+.+=.+......|..++++++..=+. -...|...+.+--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHH
Confidence 34444444444555666666666666544 345555555555555555555555555555543111 1223333333333
Q ss_pred hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHH
Q 042039 98 KNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALS 177 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (376)
..|++..|.++|++-.+. .|+...|.+.+..-.+...++.|..++++..-. .|+...|......-.+.|+...|..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 445555555555554443 445555555555555555555555555554433 2444444444444444444444444
Q ss_pred HHHHHH
Q 042039 178 LYREMV 183 (376)
Q Consensus 178 ~~~~~~ 183 (376)
+|+.+.
T Consensus 229 VyerAi 234 (677)
T KOG1915|consen 229 VYERAI 234 (677)
T ss_pred HHHHHH
Confidence 444443
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3.9e-11 Score=93.49 Aligned_cols=224 Identities=13% Similarity=0.135 Sum_probs=114.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 042039 126 TLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYN-ILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI 204 (376)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (376)
+++......-++++|++++.++...+ |.-...+ .+.-+|.+..-++-+.+++.-.++. ++.++...+..+....+.
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhh
Confidence 34445555557888888888887653 3333333 4556677777778888888777664 232333333222222221
Q ss_pred cchHHHHH--------------HHHHHHhcC-----------------CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhc
Q 042039 205 HQVEHALK--------------LFEEMQRDD-----------------VAADTSTYNTFIDGLCKNGYIVEAVELFRTLG 253 (376)
Q Consensus 205 ~~~~~a~~--------------~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (376)
=.-..|.+ ..+.+.+.+ ...-+..-..++..|.+.++..+|..+.+++.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 11011111 111111111 00112334445556777888888887777653
Q ss_pred ccCCCchHHHHHHHHHHHH-------------------------------------------hCCChHHHHHHHhccccc
Q 042039 254 ILKCELDIQAYNCLIDGLC-------------------------------------------KSGRLEIALELFRSLPRR 290 (376)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~-------------------------------------------~~~~~~~a~~~~~~~~~~ 290 (376)
.. ++.-|..-+.... -..++++++.++..+...
T Consensus 313 Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 313 PT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred CC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 2222221111122 222233333333333322
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 291 VLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
+..|...-..+.++.+..|++.+|+++|-++....++.+......|.++|.+.++++-|.+++-++
T Consensus 389 -F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 389 -FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred -hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 222222223466777778888888888877765545533334455567888888888777665544
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.56 E-value=1.8e-11 Score=89.60 Aligned_cols=199 Identities=14% Similarity=0.022 Sum_probs=128.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
.+...|...|.+.|++..|..-+++.++..+. +..+|..+...|.+.|+.+.|.+.|++.++.. +.+..+.+.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34555666777777777777777777765332 45566666777777777777777777777653 33566667777777
Q ss_pred HhcCcHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHH
Q 042039 132 CLTGKINRAEELFGSMESMG-CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHA 210 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 210 (376)
|..|++++|...|++..... .+....+|.+++-|..+.|+++.|...|++.++.. +-...+...+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 77777777777777766542 12234566777777777777777777777777652 22345566666677777777777
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 042039 211 LKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGI 254 (376)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (376)
...++.....+ .++...+-..++.--..|+-+.+-++=..+..
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777766655 35666666666666666776666665555443
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.55 E-value=1.3e-11 Score=90.32 Aligned_cols=199 Identities=14% Similarity=0.045 Sum_probs=162.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYC 167 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (376)
+...+.-.|...|+...|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..+.. |.+..+.|+.+..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567778899999999999999999875 4467888899999999999999999999998886 677888999999999
Q ss_pred ccCcHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHH
Q 042039 168 KNKEVEEALSLYREMVSKGI-KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAV 246 (376)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (376)
..|++++|...|++...... .....+|..+.-+..+.|+.+.|...|++.++.+ +..+.....+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887532 2236788888888888999999999999888876 556677788888888889998898
Q ss_pred HHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 247 ELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
..++.....+. ++..++...++.-...|+-+.+.++=.++.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888877664 67777777777778888888777766665553
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.4e-11 Score=93.45 Aligned_cols=292 Identities=13% Similarity=0.051 Sum_probs=210.0
Q ss_pred HhcCChhHHHHHHHHhhhC-CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHH
Q 042039 27 CKEGFVDKAKALFLQMKGE-NINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEA 105 (376)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 105 (376)
+..++-..|...+-.+... -.+.|+.....+..++...|+..+|+..|++....++. +..........+...|+.+..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 3345544554444433322 24667888888999999999999999999888765322 333444455566778888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 106 SRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
..+...+.... +.+...|..-+.......++..|+.+-++.++.+ +.+...+..-+..+...+++++|.-.|+.+...
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 88877776643 2344555555666667788889998888888876 567777777788888899999999999888774
Q ss_pred CCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHH-HHH-HhCCCHHHHHHHHHHhcccCCCchHHH
Q 042039 186 GIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFI-DGL-CKNGYIVEAVELFRTLGILKCELDIQA 263 (376)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~ 263 (376)
-+.+...|.-++.+|...|.+.+|.-.-....+. .+.+..++..+. ..+ ....--++|.++++......+. -...
T Consensus 364 -ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~A 440 (564)
T KOG1174|consen 364 -APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPA 440 (564)
T ss_pred -chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHH
Confidence 2346788999999999999998888777766554 244555555553 222 2233457888888887766422 3556
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 042039 264 YNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENA 326 (376)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (376)
...++..+...|..+.++.++++... ..||....+.|+..+...+.+++|.+.|..+...+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 77788888888999999999988776 36788888889999999999999999888887754
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.54 E-value=2.8e-11 Score=97.92 Aligned_cols=150 Identities=10% Similarity=-0.100 Sum_probs=82.1
Q ss_pred CChHHHHHHHHHHHhcCC-CC--chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHH
Q 042039 65 NDWNEAKRLFFEMMDQGV-QP--SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAE 141 (376)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 141 (376)
++.+.++.-+.+++.... .| ....|..+...+...|++++|...|++.++.. +.+...|..++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344555666656554311 11 12345555666666666666666666666653 234566666666666666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 042039 142 ELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (376)
..|++..+.. |.+..++..++.++...|++++|++.+++..+. .|+..............++.++|...+.+..
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666554 344556666666666666666666666666653 2222111111122233455666666665443
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.54 E-value=2.7e-11 Score=97.97 Aligned_cols=220 Identities=12% Similarity=0.039 Sum_probs=158.8
Q ss_pred cCChhHHHHHHHHhhhCCC-C--CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHH
Q 042039 29 EGFVDKAKALFLQMKGENI-N--PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEA 105 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 105 (376)
.+..+.++..+.+++.... . .....|..++..+...|++++|...|++.++..+. +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 4566778888888886431 1 12466888999999999999999999999997544 688999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 106 SRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
...|++.++.. +.+..++..++.++...|++++|.+.+++..... |.+. ........+...+++++|...+.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999864 3357788889999999999999999999999875 3333 2233333455678899999999776643
Q ss_pred CCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc---CC---CCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC
Q 042039 186 GIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD---DV---AADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC 257 (376)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (376)
..|+...+ .......|+...+ ..+..+.+. .+ +.....|..++..+.+.|++++|+..|+++...++
T Consensus 195 -~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 -LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23332221 2333345555443 344444322 10 12335678888888888888888888888877653
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.5e-11 Score=96.34 Aligned_cols=273 Identities=15% Similarity=0.077 Sum_probs=218.9
Q ss_pred cccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhH
Q 042039 10 VVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTF 89 (376)
Q Consensus 10 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (376)
...+-|+.....+...+...|+.++|+..|++..-.+ +-+..........+.+.|+.++...+...+.... +-+...|
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 4557788899999999999999999999999988775 4455556666677788899999988888887652 2245556
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
..-+.......+++.|+.+-++.++.+ +.+...+..-+..+...++.++|.-.|+.+.... |.+..+|..|+.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 555666777889999999999998864 3456677777888899999999999999998875 67889999999999999
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHH-HhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHH
Q 042039 170 KEVEEALSLYREMVSKGIKPTVVTYNTLF-LGL-FEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVE 247 (376)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (376)
|.+.+|.-.-+...+. .+.+..+...+. ..+ .....-++|.++++..++.. |.-......++..+...|..+.++.
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHH
Confidence 9999999888777664 344555555553 222 23344678999999988764 3445567788889999999999999
Q ss_pred HHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 248 LFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
++++.... .||......++..+...+.+.+|...|..+.+.
T Consensus 460 LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 460 LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99998755 678899999999999999999999999998875
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=2.5e-10 Score=97.64 Aligned_cols=344 Identities=14% Similarity=0.067 Sum_probs=209.0
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc-hHhHH
Q 042039 12 CKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS-VVTFN 90 (376)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 90 (376)
+.-|+..|..+.-++...|+++.+.+.|++....- -...+.|+.+...+...|.-..|+.+++........|+ +..+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34577888888888888899999988888876442 33456777777777777777777777776655432232 22222
Q ss_pred HHHHHHH-hCCChHHHHHHHHHHHh--------------------------------------------------cCCCC
Q 042039 91 VIMDELC-KNGKMDEASRLLDLMVQ--------------------------------------------------RDVRP 119 (376)
Q Consensus 91 ~l~~~~~-~~~~~~~a~~~~~~~~~--------------------------------------------------~~~~~ 119 (376)
.....|. +.+..++++.+-.+++. .+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 2222222 23444444444444433 32 22
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-CCCC---------
Q 042039 120 NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK-GIKP--------- 189 (376)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------- 189 (376)
|+.+...+.--|+..++++.|.+..++..+.+...+...|..+..++...+++.+|+.+.+..... |...
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 333333444445555666666666666655543555566666666666666666666666655543 1000
Q ss_pred ---------CHhHHHHHHHHHHh-----------------------ccchHHHHHHHHHHH--------hcC--------
Q 042039 190 ---------TVVTYNTLFLGLFE-----------------------IHQVEHALKLFEEMQ--------RDD-------- 221 (376)
Q Consensus 190 ---------~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~-------- 221 (376)
...|...++..+-. .++..++.+....+. ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 01111111111110 001111111111100 000
Q ss_pred -CCCCc--------chHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCC
Q 042039 222 -VAADT--------STYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVL 292 (376)
Q Consensus 222 -~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (376)
..|.. ..+......+.+.+..++|...+.++.... +.....|...+..+...|++++|.+.|...... .
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-d 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-D 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-C
Confidence 00010 123344556667777788877777766554 446777888888888999999999999988775 3
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHH--HHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 293 VADVVTYNIMIHGLCNDGQMDKAHD--LFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
|.++.....++.++.+.|+..-|.. ++..+.+.+.. +...|..+...+.+.|+.+.|.+.|....+-
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 5567788899999999998888887 99999987644 8899999999999999999999999988754
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=9.4e-12 Score=104.98 Aligned_cols=236 Identities=18% Similarity=0.136 Sum_probs=115.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhc-----C-CCCChhh-HHHHHHHHHhcCcHHHHHHHHHHHHhc-----C--CC
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQR-----D-VRPNAFT-YSTLMDGFCLTGKINRAEELFGSMESM-----G--CK 153 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 153 (376)
+...+...|...|+++.|..+++..++. | ..|...+ ...++..|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333444555555555555554444432 1 0122221 222444555555555555555554321 1 11
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-----CC-CCC-HhHHHHHHHHHHhccchHHHHHHHHHHHhc---CCC
Q 042039 154 HDDVSYNILINGYCKNKEVEEALSLYREMVSK-----GI-KPT-VVTYNTLFLGLFEIHQVEHALKLFEEMQRD---DVA 223 (376)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 223 (376)
.-..+++.|..+|.+.|++++|...++.+.+- +. .|. ...+..+...+...+++++|..++....+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 12234445555555555555555555444321 11 111 223344444555555555555555543322 011
Q ss_pred ----CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC-------CCchHHHHHHHHHHHHhCCChHHHHHHHhcccc---
Q 042039 224 ----ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK-------CELDIQAYNCLIDGLCKSGRLEIALELFRSLPR--- 289 (376)
Q Consensus 224 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 289 (376)
.-..++..+...|...|++++|.++++.++... .......++.++..|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 123456666666666666666666666653211 111234556666666666666666666655321
Q ss_pred -cC--CCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 042039 290 -RV--LVADVVTYNIMIHGLCNDGQMDKAHDLFLDME 323 (376)
Q Consensus 290 -~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (376)
.| .+....+|..|+.+|...|+++.|+++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 22234567777777777777777777776665
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=1.6e-09 Score=91.21 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 042039 263 AYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFV 342 (376)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (376)
++..++..+-..|+++.|..+++.+..+ .|.-+..|..-.+.+...|++++|..+++++.+.+ .+|...-..-+....
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 3345566666777777777777776665 22223444445566777777777777777777653 234433334455556
Q ss_pred hcCChhhHHHHHHHHHhCCC
Q 042039 343 RINKPSKVIELLHKMKEKKV 362 (376)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~ 362 (376)
+.++.++|.++.....+.|.
T Consensus 451 rAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HccccHHHHHHHHHhhhccc
Confidence 67777777777777766653
No 74
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.6e-10 Score=88.06 Aligned_cols=296 Identities=14% Similarity=0.085 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH-HHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV-IMDE 95 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 95 (376)
--+.+++..+.+..++..|++++..-.++. +.+......|..+|....++..|-+.|+++... .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 347778888889999999999999888775 557888999999999999999999999999775 455444433 3567
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
+.+.+.+..|+++...|.... ..-......-.......+++..+..+.++....+ +..+.+..+....+.|+++.|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 788899999999998886531 1112222222333456788888888888876533 556677777788899999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcc----------------------------
Q 042039 176 LSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTS---------------------------- 227 (376)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------------- 227 (376)
.+-|+...+-+---....| .+.-+..+.++++.|.+...++++.|++..+.
T Consensus 164 vqkFqaAlqvsGyqpllAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9999998885333233444 44556778899999999999988876443211
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhcccC-CCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHH
Q 042039 228 TYNTFIDGLCKNGYIVEAVELFRTLGILK-CELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGL 306 (376)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (376)
.++.-...+.+.++++.|.+.+..|.... ...|+.+...+.-.-. .+++....+-++-+... .|....||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~-nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ-NPFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc-CCCChHHHHHHHHHH
Confidence 12333334567889999998888875432 2456777766654432 33444444444444443 234578899999999
Q ss_pred HccCChhHHHHHHHHH
Q 042039 307 CNDGQMDKAHDLFLDM 322 (376)
Q Consensus 307 ~~~~~~~~a~~~~~~~ 322 (376)
++..-++-|.+++.+-
T Consensus 321 CKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAEN 336 (459)
T ss_pred hhhHHHhHHHHHHhhC
Confidence 9999999888887653
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.46 E-value=1.7e-09 Score=91.03 Aligned_cols=198 Identities=15% Similarity=0.059 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPD---VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
..|..+...+...|+.+.+...+....+.. +++ ..........+...|++++|.+.+++.....+. +...+.. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 445666666666777777766666655443 222 222333445566778888888888887765322 3333332 1
Q ss_pred HHHH----hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 94 DELC----KNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 94 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
..+. ..+....+.+.+.... ...+........+...+...|++++|...+++..+.. |.+...+..+..++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222 2344444444444311 1112223344455667777788888888888877765 55566677777778888
Q ss_pred CcHHHHHHHHHHHHHCCC-CCC--HhHHHHHHHHHHhccchHHHHHHHHHHHh
Q 042039 170 KEVEEALSLYREMVSKGI-KPT--VVTYNTLFLGLFEIHQVEHALKLFEEMQR 219 (376)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (376)
|++++|...+++...... .|+ ...|..+...+...|++++|..++++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888877766421 122 12344566777777777777777777643
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.6e-09 Score=86.28 Aligned_cols=342 Identities=13% Similarity=0.028 Sum_probs=183.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
+=++.+.+.|++++|.....+++..+ +.+..++..-+.++++.+++++|+.+.+.-... ..+...+..-+.+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 33466777888999999999888776 667778888888888888888888655432211 101111112223344556
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC---------------------------
Q 042039 101 KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCK--------------------------- 153 (376)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------- 153 (376)
..++|+..++-+. +.+..+...-...+.+.|++++|..+|+.+.+.+.+
T Consensus 94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 6666666665111 112334445555566666666666666665332110
Q ss_pred -C--ChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-------CCCCC-------HhHHHHHHHHHHhccchHHHHHHHHH
Q 042039 154 -H--DDVSYNILINGYCKNKEVEEALSLYREMVSK-------GIKPT-------VVTYNTLFLGLFEIHQVEHALKLFEE 216 (376)
Q Consensus 154 -~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (376)
| +-..+.+....+...|++.+|+++++...+. +-.-+ ...-..+..++...|+..+|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 0 1112223344455566666666666665221 00000 11123334445556666666666665
Q ss_pred HHhcCCCCCcc---------------------------------------------------------------------
Q 042039 217 MQRDDVAADTS--------------------------------------------------------------------- 227 (376)
Q Consensus 217 ~~~~~~~~~~~--------------------------------------------------------------------- 227 (376)
.++.+. +|..
T Consensus 250 ~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 250 IIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 555431 1110
Q ss_pred ------------hHHHHHHHHHh--CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHh--------
Q 042039 228 ------------TYNTFIDGLCK--NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFR-------- 285 (376)
Q Consensus 228 ------------~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------- 285 (376)
.+..++..+.+ ...+.++..++.........-...+....+......|+++.|.+++.
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 11111111111 11233344444443333222223445556666778899999999888
Q ss_pred cccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 286 SLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN------AVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.+.+.+. .+.+...+...+.+.++-+.|..++.+++.. +-.--..++..++..-.+.|+.++|..+++++.+
T Consensus 409 s~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 409 SILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 4444333 3445556677777777777777777776542 1111123445555556678999999999999987
Q ss_pred CCCCCchHHHHHHH
Q 042039 360 KKVMPDASIVSMVV 373 (376)
Q Consensus 360 ~~~~p~~~~~~~ll 373 (376)
.. ++|..+...++
T Consensus 487 ~n-~~d~~~l~~lV 499 (652)
T KOG2376|consen 487 FN-PNDTDLLVQLV 499 (652)
T ss_pred hC-CchHHHHHHHH
Confidence 53 44555554444
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.46 E-value=2.3e-09 Score=90.13 Aligned_cols=309 Identities=10% Similarity=0.002 Sum_probs=195.8
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCch-HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV-QPSV-VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYS 125 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (376)
|.....|..+...+...|+.+.+.+.+.+..+... .++. .........+...|++++|..++++..+.. +.+...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 33466778888888888999998888877765422 1222 223333446678899999999999998863 33444443
Q ss_pred HHHHHHH----hcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042039 126 TLMDGFC----LTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGL 201 (376)
Q Consensus 126 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (376)
. ...+. ..+..+.+.+.++.... ..+........+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 2 22222 24555556666554211 123334455567788999999999999999999963 44567788889999
Q ss_pred HhccchHHHHHHHHHHHhcCCC-CCc--chHHHHHHHHHhCCCHHHHHHHHHHhcccCC-CchHHHH-H--HHHHHHHhC
Q 042039 202 FEIHQVEHALKLFEEMQRDDVA-ADT--STYNTFIDGLCKNGYIVEAVELFRTLGILKC-ELDIQAY-N--CLIDGLCKS 274 (376)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~ 274 (376)
...|++++|...+++....... +.. ..+..++..+...|++++|..+++++..... .+..... . .++..+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 9999999999999998876421 222 2345688889999999999999999864432 1111111 1 223333444
Q ss_pred CChHHHHHH---Hhccccc-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC------C--cHHHHHHHHHHHh
Q 042039 275 GRLEIALEL---FRSLPRR-VLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVA------P--NVIIFVTLIHGFV 342 (376)
Q Consensus 275 ~~~~~a~~~---~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~ 342 (376)
|....+.+. ....... ..............++...|+.++|..+++.+...... . ..........++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433333322 1111111 00111222235677788999999999999988653211 0 1122222334567
Q ss_pred hcCChhhHHHHHHHHHhC
Q 042039 343 RINKPSKVIELLHKMKEK 360 (376)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~ 360 (376)
..|++++|.+.+......
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 899999999999988754
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.45 E-value=3.5e-09 Score=82.47 Aligned_cols=304 Identities=12% Similarity=0.049 Sum_probs=220.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHh-HHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVT-FNVIM 93 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 93 (376)
++.--.-+...+...|++..|+.-|....+-+ |.+-.++..-...|...|+-..|+.-+.+.++. +||-.. -..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444556777888899999999998888654 445556666678888999999999999998875 666432 22344
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCC--hh------------hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhH
Q 042039 94 DELCKNGKMDEASRLLDLMVQRDVRPN--AF------------TYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSY 159 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (376)
..+.++|.++.|..-|+.+++.....+ .. .....+..+...|+...|+.....+.+.. +.+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 567889999999999999988742211 11 12233455667789999999999998876 7788888
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchH----HHH---
Q 042039 160 NILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTY----NTF--- 232 (376)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l--- 232 (376)
..-..+|...|++..|+.-++...+. ...+...+..+...+...|+.+.++...++.++.+ |+.... ..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHH
Confidence 88899999999999999888887765 23466777778888889999999998888887764 333221 111
Q ss_pred ------HHHHHhCCCHHHHHHHHHHhcccCCCch---HHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHH
Q 042039 233 ------IDGLCKNGYIVEAVELFRTLGILKCELD---IQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMI 303 (376)
Q Consensus 233 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (376)
+......+++.++.+..+...+..+... ...+..+-.++...+++.+|++.-.++++. .+.|..++..-.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHH
Confidence 1223456677777777777665543311 233445556677788899999988888775 344588888888
Q ss_pred HHHHccCChhHHHHHHHHHHHcC
Q 042039 304 HGLCNDGQMDKAHDLFLDMEENA 326 (376)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~ 326 (376)
.+|.-...++.|+.-|+.+.+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC
Confidence 89999999999999999887754
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=1.1e-08 Score=86.16 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 042039 123 TYSTLMDGFCLTGKINRAEELFGSMES 149 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 149 (376)
.|..|+..|.+.|++++|..+|++...
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 355666666666666666666665443
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=1.2e-08 Score=86.13 Aligned_cols=345 Identities=14% Similarity=0.168 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcC----------------C------ChHHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHA----------------N------DWNEAKRLF 74 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~ 74 (376)
..|++|.+.|.+.|.+++|.++|++..+. ..++.-|..+...|++- + +++-...-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 46889999999999999999999988765 22333344444433321 1 122333444
Q ss_pred HHHHhcCC-----------CCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHhcCcH
Q 042039 75 FEMMDQGV-----------QPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN------AFTYSTLMDGFCLTGKI 137 (376)
Q Consensus 75 ~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 137 (376)
+.+..... +.++..|..-. -+..|+..+....|.++++. +.|. ...|..+...|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 44433211 11333343322 23456677777888887764 2222 34577888888999999
Q ss_pred HHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-----------------CHhHHHHH
Q 042039 138 NRAEELFGSMESMGCKHD---DVSYNILINGYCKNKEVEEALSLYREMVSKGIKP-----------------TVVTYNTL 197 (376)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l 197 (376)
+.|..+|++......+.- ..+|...+..-.+..+++.|+++++.+....-.| +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999887653322 3466667777778888899999888776431111 23345555
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchH-HHHHHHHHHHHh---
Q 042039 198 FLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDI-QAYNCLIDGLCK--- 273 (376)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--- 273 (376)
+...-..|-++....++++++...+ .++......+..+..+..++++.+.|++-+..-..|+. ..|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 5555567788888888888887753 34555555555666777788888888887665544443 455555444433
Q ss_pred CCChHHHHHHHhcccccCCCCCHH-H-HHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCChhh
Q 042039 274 SGRLEIALELFRSLPRRVLVADVV-T-YNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN--VIIFVTLIHGFVRINKPSK 349 (376)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 349 (376)
...++.|..+|+++++ +.||... + |......=-+.|-...|..+++++... +++. ...|+..+.--...--...
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3468888888888887 4555432 2 222222223456677777787776543 2222 2345555543333333444
Q ss_pred HHHHHHHHHhCCCCCchHHHHH
Q 042039 350 VIELLHKMKEKKVMPDASIVSM 371 (376)
Q Consensus 350 a~~~~~~~~~~~~~p~~~~~~~ 371 (376)
...+|++.++. -|+...-..
T Consensus 641 TR~iYekaIe~--Lp~~~~r~m 660 (835)
T KOG2047|consen 641 TREIYEKAIES--LPDSKAREM 660 (835)
T ss_pred cHHHHHHHHHh--CChHHHHHH
Confidence 55555555543 444444333
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=8.8e-11 Score=97.23 Aligned_cols=254 Identities=18% Similarity=0.130 Sum_probs=194.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
..-+.+.|++.+|.-.|+..++.+ +.+...|..|+......++-..|+..++++.+.. |.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345678899999999999999875 4478899999999999999999999999999987 67888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-------HhHHHHHHHHHHhccchHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhCCCHHH
Q 042039 173 EEALSLYREMVSKGIKPT-------VVTYNTLFLGLFEIHQVEHALKLFEEMQRD-DVAADTSTYNTFIDGLCKNGYIVE 244 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 244 (376)
.+|+..++..+....+-- ...+.. -........+....++|-++... +..+++.+...|...|.-.|++++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999876421100 000000 01112222334455555555444 434788899999999999999999
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 042039 245 AVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVAD-VVTYNIMIHGLCNDGQMDKAHDLFLDME 323 (376)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (376)
|++.|+.+.... +-|..+|+.|+..++...+.++|+..|+++++. .|+ +.+.+.|+-.|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999998876 448899999999999999999999999999885 444 5677889999999999999999988776
Q ss_pred Hc---------CCCCcHHHHHHHHHHHhhcCChhhHHH
Q 042039 324 EN---------AVAPNVIIFVTLIHGFVRINKPSKVIE 352 (376)
Q Consensus 324 ~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 352 (376)
.. ...++..+|..|=.++.-.++.|-+..
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 42 112234577777777777777765444
No 82
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=1e-12 Score=74.84 Aligned_cols=50 Identities=54% Similarity=0.950 Sum_probs=42.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCH 63 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 63 (376)
||+.+||.+|++|++.|++++|.++|++|.+.|++||..+|+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
No 83
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=5.1e-11 Score=103.30 Aligned_cols=268 Identities=15% Similarity=0.138 Sum_probs=164.7
Q ss_pred cccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhH
Q 042039 10 VVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTF 89 (376)
Q Consensus 10 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (376)
.|+.||.++|..+|..|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+. .|...+|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 466777777777777777777777777 7777776666667777777777777777666554 4567777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
..+..+|...|+... |+...+ ....+...+...|--.....++..+.-. +.....-.+.+....-.
T Consensus 87 t~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVLE 152 (1088)
T ss_pred HHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHHH
Confidence 777777777777655 222221 1122233344444444444444443221 12222233344445556
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHH
Q 042039 170 KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELF 249 (376)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (376)
|-++.+++++..+...... .+... +++-... ++....++........-.+++.++..++.+-...|+.+.|..++
T Consensus 153 glwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHhhCCccccc-chHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 6677776666554332110 11111 2332222 22223333333322222578888888888888889999999999
Q ss_pred HHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC
Q 042039 250 RTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ 311 (376)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (376)
..|.+.|.+.++.-|..++-. .++..-+..++..|...|+.|+..|+...+..+..+|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999888887776666666544 77777888888888888888888888888877777555
No 84
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=9.5e-11 Score=101.67 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=169.6
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 042039 37 ALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRD 116 (376)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (376)
.++-.+...|+.|+..+|..++.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34455566677777777777777777777777766 6666665555556666666666666666655544
Q ss_pred CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH-CCCCCCHhHHH
Q 042039 117 VRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS-KGIKPTVVTYN 195 (376)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 195 (376)
.|-+.+|..+..+|...||... |+...+ ....+...+...|.-.....++..+.- .+.-|+. .
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~ 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---E 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---H
Confidence 4566677777777777777655 222221 111223333344443443344433221 1122333 2
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCC-CHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhC
Q 042039 196 TLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNG-YIVEAVELFRTLGILKCELDIQAYNCLIDGLCKS 274 (376)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (376)
..+......|-++.+.+++..+..... ..+... +++-+.... .+++-..+.+.... .|++.++..++.+-...
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 334444556677777777665533321 111111 233333322 34444444444443 46888899999888889
Q ss_pred CChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC
Q 042039 275 GRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINK 346 (376)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 346 (376)
|+.+.|..++.+|.+.|++.+.+.|..++.+ .++...++.+++.|.+.|+.|+..|+...+-.+..+|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999988888888887765 78888888889999999999999998888777777554
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.38 E-value=8e-09 Score=80.56 Aligned_cols=305 Identities=11% Similarity=0.051 Sum_probs=229.0
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChh-hHHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAF-TYST 126 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 126 (376)
+.++.-..-+...+...|++.+|+.-|...++.++. +-.++..-...|...|+-..|+.-+.++++. +||-. .-..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 345666777888999999999999999999875322 3334445566889999999999999999885 67733 3334
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCC--hhh------------HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHh
Q 042039 127 LMDGFCLTGKINRAEELFGSMESMGCKHD--DVS------------YNILINGYCKNKEVEEALSLYREMVSKGIKPTVV 192 (376)
Q Consensus 127 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (376)
-...+.++|.++.|..-|+.+.+...... ..+ ....+..+...|+...|+..+..+++. .+-+..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhH
Confidence 56678899999999999999988752111 111 122344566789999999999999986 344788
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHH----HHHH-
Q 042039 193 TYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQA----YNCL- 267 (376)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l- 267 (376)
.+..-..+|...|++..|+.-+..+.+.. ..+...+..+...+...|+.+.++...++..+.+ |+... |-.+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHH
Confidence 88888999999999999999988887764 5577788888899999999999999999887764 33221 1111
Q ss_pred --------HHHHHhCCChHHHHHHHhcccccCCC---CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHHHH
Q 042039 268 --------IDGLCKSGRLEIALELFRSLPRRVLV---ADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAP-NVIIFV 335 (376)
Q Consensus 268 --------~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 335 (376)
+......++|.+++...+...+.... .....+..+-.++...+++.+|+....++++. .| |..++.
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~ 345 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHH
Confidence 22334567788888887776664221 11234566677888899999999999999885 44 488888
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 336 TLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
.-..+|.-...++.|+.-|++..+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 88899999999999999999988653
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.3e-09 Score=85.44 Aligned_cols=330 Identities=13% Similarity=0.072 Sum_probs=224.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc-hHhHHHHHHHHHhCCC
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS-VVTFNVIMDELCKNGK 101 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 101 (376)
..+.+..|+++.|+.+|.+.+... |+|...|..-..+|...|++++|++--.+-++. .|+ ..-|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 345678899999999999988887 668888989999999999999998877776665 444 4578888888888999
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---C-------------------------c-----------------
Q 042039 102 MDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLT---G-------------------------K----------------- 136 (376)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-------------------------~----------------- 136 (376)
+++|...|.+-++.. +.|...+..+..++... + .
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999888764 33455555555544111 0 0
Q ss_pred ------HHHHHHHHHHHH-----hc-------CCCC---------C-------------hhhHHHHHHHHHccCcHHHHH
Q 042039 137 ------INRAEELFGSME-----SM-------GCKH---------D-------------DVSYNILINGYCKNKEVEEAL 176 (376)
Q Consensus 137 ------~~~a~~~~~~~~-----~~-------~~~~---------~-------------~~~~~~l~~~~~~~~~~~~a~ 176 (376)
+..+...+.... .. ...| . ..-...+++...+..+++.|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 000100000000 00 0001 0 012345667777777888888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcc-------hHHHHHHHHHhCCCHHHHHHHH
Q 042039 177 SLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTS-------TYNTFIDGLCKNGYIVEAVELF 249 (376)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 249 (376)
+.+....... .+..-++....++...|.+..+........+.|. .... .+..+..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 8888887753 4555666677778888887777777666655541 1112 2233444666778888899888
Q ss_pred HHhcccCCCchHHH-------------------------HHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHH
Q 042039 250 RTLGILKCELDIQA-------------------------YNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIH 304 (376)
Q Consensus 250 ~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (376)
.+.......|+... ...-+..+.+.|++..|...|.+++.+ .|.|...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-~P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-DPEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCchhHHHHHHHH
Confidence 88765444433211 112245567789999999999998887 4778899999999
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 305 GLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
+|.+.|.+..|+.-.+..++.+ ++....|..=..++....++++|++.|++..+..
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999888888863 2234455555666777788999999999888654
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.2e-12 Score=71.86 Aligned_cols=47 Identities=26% Similarity=0.593 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHHHhh
Q 042039 329 PNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMVVDL 375 (376)
Q Consensus 329 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 375 (376)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45555555555555555555566666655555555665555555554
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=6.4e-10 Score=88.72 Aligned_cols=251 Identities=13% Similarity=0.045 Sum_probs=141.8
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChH
Q 042039 24 DGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMD 103 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (376)
+.+.-.|++..++.-.+ ......+.+......+.+++...|+++.++. ++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence 44556788888776555 3333222334455566777777777665443 22222 2555555555544443334444
Q ss_pred HHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 104 EASRLLDLMVQRDVR-PNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 104 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
.+..-+++....... .+.......+.++...|++++|++++... .+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444443333222 12233333445556667788777776542 34566666777777788888888888777
Q ss_pred HHCCCCCCHhHHHHHHHHHHh----ccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCC
Q 042039 183 VSKGIKPTVVTYNTLFLGLFE----IHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCE 258 (376)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (376)
.+. . +..+...+..++.. .+.+..|..+|+++... .++++.+.+.++.++...|++++|.+++.++...+.
T Consensus 158 ~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~- 232 (290)
T PF04733_consen 158 QQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP- 232 (290)
T ss_dssp HCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-
T ss_pred Hhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 764 2 23344445444433 23577777777776554 355666777777777777777777777777766553
Q ss_pred chHHHHHHHHHHHHhCCCh-HHHHHHHhccccc
Q 042039 259 LDIQAYNCLIDGLCKSGRL-EIALELFRSLPRR 290 (376)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 290 (376)
-++.++..++.+....|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3666666777766666766 5566677766653
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=4.4e-10 Score=89.67 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=153.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcH
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKI 137 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (376)
++-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888886665 223222223445666778888888876543 3333332 55655555555555443445
Q ss_pred HHHHHHHHHHHhcCCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHH
Q 042039 138 NRAEELFGSMESMGCK-HDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEE 216 (376)
Q Consensus 138 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (376)
+.+..-++........ .+.........++...|++++|++++... .+.......+.++.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555444333222 22333344456667788888888877652 3556666777888888888888888888
Q ss_pred HHhcCCCCCcchHHHHHHHHHh----CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCC
Q 042039 217 MQRDDVAADTSTYNTFIDGLCK----NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVL 292 (376)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (376)
|.+.+ +..+...++.++.. .+.+.+|..+|+++... ..+++.+.+.++.+....|++++|.+++.+.... .
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~ 231 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-D 231 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-c
Confidence 87653 34555556555543 23578888888887654 3457777788888888888888888888887665 3
Q ss_pred CCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHHc
Q 042039 293 VADVVTYNIMIHGLCNDGQM-DKAHDLFLDMEEN 325 (376)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 325 (376)
+.++.+...++.+....|+. +.+.+++.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 45667777777777777776 5566677776654
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.7e-09 Score=89.85 Aligned_cols=222 Identities=14% Similarity=0.110 Sum_probs=142.8
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHH
Q 042039 25 GLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDE 104 (376)
Q Consensus 25 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 104 (376)
.+.+.|++.+|.-.|+...+.+ |.+..+|..|+......++-..|+..+++..+..+. +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4567777888888888777765 667778888888877777777788887777776433 56677777777777777777
Q ss_pred HHHHHHHHHhcCCC--------CChhhHHHHHHHHHhcCcHHHHHHHHHHH-HhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 105 ASRLLDLMVQRDVR--------PNAFTYSTLMDGFCLTGKINRAEELFGSM-ESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 105 a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
|+..++.-+...++ ++...-.. ..+.....+....++|-++ ...+...|+.+...|+-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777776553211 00000000 1111122233444444443 3333346677777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 176 LSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
+..|+.++... +-|...|+.|...+....+.++|+..|.++++.. |.-.++...++..|...|.+.+|...|-.+
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 77777777742 3356677777777777777777777777777653 334556667777777777777777766554
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=7.5e-08 Score=91.44 Aligned_cols=336 Identities=13% Similarity=0.035 Sum_probs=210.9
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC------CCc--hHhHHHHHHHHH
Q 042039 26 LCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV------QPS--VVTFNVIMDELC 97 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 97 (376)
....|+++.+...++.+.......++.........+...|++++|...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666655542211112233334455666778899999999887754311 111 112223345567
Q ss_pred hCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHc
Q 042039 98 KNGKMDEASRLLDLMVQRDVRPNA----FTYSTLMDGFCLTGKINRAEELFGSMESMGC---KH--DDVSYNILINGYCK 168 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 168 (376)
..|++++|...+++........+. .....+...+...|++++|...+++...... .+ ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 889999999999988763211121 2345566677889999999999988764311 11 12345567778888
Q ss_pred cCcHHHHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHHhccchHHHHHHHHHHHhcC--CCC--CcchHHHHHHHHH
Q 042039 169 NKEVEEALSLYREMVSK----GIK--P-TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD--VAA--DTSTYNTFIDGLC 237 (376)
Q Consensus 169 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 237 (376)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998887652 211 1 12334455667778899999999988875531 111 2234455667788
Q ss_pred hCCCHHHHHHHHHHhcccCC--CchHH--HH--HHHHHHHHhCCChHHHHHHHhcccccCCCCC---HHHHHHHHHHHHc
Q 042039 238 KNGYIVEAVELFRTLGILKC--ELDIQ--AY--NCLIDGLCKSGRLEIALELFRSLPRRVLVAD---VVTYNIMIHGLCN 308 (376)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~--~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 308 (376)
..|++++|...+..+..... ..... .. ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 89999999998888743211 10110 10 1122444568899999999877554211111 1123467778889
Q ss_pred cCChhHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 309 DGQMDKAHDLFLDMEEN----AVAP-NVIIFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 309 ~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
.|++++|...++++... +..+ ...+...+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988753 2222 23456667788899999999999999988653
No 92
>PLN02789 farnesyltranstransferase
Probab=99.26 E-value=2.1e-08 Score=81.15 Aligned_cols=215 Identities=10% Similarity=0.002 Sum_probs=140.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAN-DWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
++..+-..+...++.++|+.+.+++++.+ |.+..+|+....++...| ++++++..++++++.+.+ +..+|+....++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 44455555666788888888888888775 556677777777777777 578888888888877554 556677665555
Q ss_pred HhCCCh--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc---Cc
Q 042039 97 CKNGKM--DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN---KE 171 (376)
Q Consensus 97 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 171 (376)
.+.|+. +++..+++++++.+ +-|..+|.....++...|+++++++.++++++.+ +.+..+|+....++.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 566653 56777787887765 3467778777777778888888888888888776 55666777666555443 22
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc----cchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 042039 172 ----VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI----HQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK 238 (376)
Q Consensus 172 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (376)
.++.+....+++.. .+-+...|..+...+... +...+|.+.+.+....+ +.+...+..++..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 23556666566654 233556666666555552 23345666666655543 3344555566666553
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=4.3e-08 Score=82.84 Aligned_cols=307 Identities=16% Similarity=0.081 Sum_probs=197.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
.|...+. |...+++...++..+.+.+. .+...++....+-.+...|+-++|........+..+. +...|+.+.-.+.
T Consensus 10 lF~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 3444444 44678888888888888874 3556677777777778888889998888887776544 7778888888888
Q ss_pred hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHH
Q 042039 98 KNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALS 177 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (376)
...++++|+..|..++..+ +.|...+..+.-.-++.++++..........+.. +.....|..++.++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999988875 4567788888888888888888888877777764 4455677777888888888999998
Q ss_pred HHHHHHHCC-CCCCHhHHHHHHHHH------HhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 042039 178 LYREMVSKG-IKPTVVTYNTLFLGL------FEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFR 250 (376)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (376)
+++...+.. ..|+...+......+ ...|..+.|.+.+..-... +......-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 888887753 246666655544332 3456666666666554433 22223334445566778888888888888
Q ss_pred HhcccCCCchHH-HHHHHHHHHHhCCChHHHH-HHHhcccccCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHHcCC
Q 042039 251 TLGILKCELDIQ-AYNCLIDGLCKSGRLEIAL-ELFRSLPRRVLVADVVTYNIMIHGLCNDGQM-DKAHDLFLDMEENAV 327 (376)
Q Consensus 251 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~ 327 (376)
.+.... ||.. .|..+..++.+..+..++. .+|....+. .|....-..+........++ +..-+++....+.|+
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 887764 3433 3444444443333333333 556555443 22222222222222222333 333455666666666
Q ss_pred CCcHHHH
Q 042039 328 APNVIIF 334 (376)
Q Consensus 328 ~~~~~~~ 334 (376)
++-...+
T Consensus 320 p~vf~dl 326 (700)
T KOG1156|consen 320 PSVFKDL 326 (700)
T ss_pred Cchhhhh
Confidence 5443333
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=1.1e-08 Score=87.97 Aligned_cols=289 Identities=13% Similarity=-0.004 Sum_probs=198.5
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHH
Q 042039 32 VDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDL 111 (376)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 111 (376)
..++++.+++..+.+ +.|+.+...+..-|+..++.+.|.+...+..+.+...+...|..++..+...+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 457888889888876 5566666777778888999999999999999987777899999999999999999999999998
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCCh-------hhHHHHHHHHHccCcHHHHHHHHHHH-
Q 042039 112 MVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGC-KHDD-------VSYNILINGYCKNKEVEEALSLYREM- 182 (376)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~- 182 (376)
....- ..|-.....-+..-...++.+++......+...-- .+.. .....-........+..+|.+....+
T Consensus 539 al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 87642 11222222222223334555555544433322100 0000 00000000000011112222211111
Q ss_pred ----------------HHCCCCC--C------HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 042039 183 ----------------VSKGIKP--T------VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK 238 (376)
Q Consensus 183 ----------------~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (376)
......| + ...|......+...+..+++...+.+..... +.....|...+..+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 1111111 2 2234455666778888899998888887764 5677788888889999
Q ss_pred CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHH--HHhcccccCCCCCHHHHHHHHHHHHccCChhHHH
Q 042039 239 NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALE--LFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAH 316 (376)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 316 (376)
.|..++|.+.|..+...++ .++.....++.++.+.|+..-|.. ++..+.+. .+.+...|..++..+.+.|+.++|.
T Consensus 697 ~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccchHHHH
Confidence 9999999999999887763 367889999999999998888877 99999887 4678999999999999999999999
Q ss_pred HHHHHHHHc
Q 042039 317 DLFLDMEEN 325 (376)
Q Consensus 317 ~~~~~~~~~ 325 (376)
+.|+...+.
T Consensus 775 ecf~aa~qL 783 (799)
T KOG4162|consen 775 ECFQAALQL 783 (799)
T ss_pred HHHHHHHhh
Confidence 999988764
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.6e-08 Score=77.41 Aligned_cols=294 Identities=12% Similarity=0.044 Sum_probs=204.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHH-HHHHHH
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYS-TLMDGF 131 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 131 (376)
-+...+..+++..++++|++++..-.+...+ +......+..+|....++..|...|+++-.. .|...-|. .-...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3566677778889999999999988877443 7778888999999999999999999999876 44444443 346677
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHH
Q 042039 132 CLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHAL 211 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (376)
.+.+.+..|..+...+.+.. .....+...-.......+++..+..+.++.... .+..+.....-...+.|+++.|.
T Consensus 89 Y~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 78899999999998886531 111122222233445678888888888876543 24556666667778999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCc-------------hH---------------HH
Q 042039 212 KLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCEL-------------DI---------------QA 263 (376)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~ 263 (376)
+-|+...+-+.-.....| .++-+..+.++++.|.+...++++.|++. |. ..
T Consensus 165 qkFqaAlqvsGyqpllAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 999999887533333344 45556778899999999998886665431 11 12
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcccccC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 042039 264 YNCLIDGLCKSGRLEIALELFRSLPRRV-LVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFV 342 (376)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (376)
++.-...+.+.|+++.|.+.+..|..+. ...|+.|...+.-.-. .+++.+..+-++-+.+.++ -...||..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 2333444567899999999999886432 3456777666554332 3445555555555555543 35678888888899
Q ss_pred hcCChhhHHHHHHH
Q 042039 343 RINKPSKVIELLHK 356 (376)
Q Consensus 343 ~~g~~~~a~~~~~~ 356 (376)
+..-++-|-+++-+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 98888877776643
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.2e-07 Score=76.25 Aligned_cols=335 Identities=13% Similarity=0.073 Sum_probs=198.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
+-|...+..-+-++.+.++|++|+.+.+.-... ..+...+..-+.+..+.+..++|+..++-.. +.+..+...-
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~ 116 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELR 116 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHH
Confidence 455667778888888999999998655433211 1111122344566677788888888877221 1133356666
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCC-------------------------C--ChhhH---HHHHHHHHhcCcHHHHHH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVR-------------------------P--NAFTY---STLMDGFCLTGKINRAEE 142 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------~--~~~~~---~~l~~~~~~~~~~~~a~~ 142 (376)
...+.+.+++++|..+|+.+.+.+.+ | ...+| ....-.+...|++.+|++
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e 196 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIE 196 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence 67778888888888888887654210 0 01122 223344556788888888
Q ss_pred HHHHHHhcC-------CCCCh-------hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhH---------------
Q 042039 143 LFGSMESMG-------CKHDD-------VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVT--------------- 193 (376)
Q Consensus 143 ~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------- 193 (376)
+++.....+ -..+. ..-..+.-++...|+.++|..+|...++.... |...
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhcccc
Confidence 888772211 00000 12234455666788888888888877765321 1100
Q ss_pred ------------------------------------------------------------------HHHHHHHHH--hcc
Q 042039 194 ------------------------------------------------------------------YNTLFLGLF--EIH 205 (376)
Q Consensus 194 ------------------------------------------------------------------~~~l~~~~~--~~~ 205 (376)
+..++.... +..
T Consensus 276 ~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~ 355 (652)
T KOG2376|consen 276 NYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREK 355 (652)
T ss_pred ccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHH
Confidence 000000000 001
Q ss_pred chHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHH--------HhcccCCCchHHHHHHHHHHHHhCCCh
Q 042039 206 QVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFR--------TLGILKCELDIQAYNCLIDGLCKSGRL 277 (376)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (376)
.+..+..++....+........+....+......|+++.|.+++. .+...+. .+.+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 122333333333333211123355566777889999999999998 5544443 345666777778888877
Q ss_pred HHHHHHHhcccccC--CCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHH
Q 042039 278 EIALELFRSLPRRV--LVAD----VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVI 351 (376)
Q Consensus 278 ~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 351 (376)
+.|..++.++...- ..+. ..++..++..-.+.|+-++|..+++++.+.+ +++..+...++.+|++. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 77777776654320 0111 2234444445557799999999999999864 46888899999999876 788888
Q ss_pred HHHHHHH
Q 042039 352 ELLHKMK 358 (376)
Q Consensus 352 ~~~~~~~ 358 (376)
.+-+.+.
T Consensus 512 ~l~k~L~ 518 (652)
T KOG2376|consen 512 SLSKKLP 518 (652)
T ss_pred HHhhcCC
Confidence 8766653
No 97
>PLN02789 farnesyltranstransferase
Probab=99.21 E-value=7.1e-08 Score=78.17 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=145.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG-KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFC 132 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (376)
+..+-..+...++.++|+.+..++++.++. +..+|+....++...| ++++++..++++++.+ +.+..+|+....++.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 334444455567888999999998886433 5566776666777777 5789999999988875 335566776666666
Q ss_pred hcCcH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---cch
Q 042039 133 LTGKI--NRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI---HQV 207 (376)
Q Consensus 133 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 207 (376)
+.|+. +++..+++++.+.. +.+..+|.....++...|+++++++.++++++.+.. +..+|......+.+. +..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66653 67788888888776 677888888888888889999999999999887543 566666666555443 222
Q ss_pred ----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC----CCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHh
Q 042039 208 ----EHALKLFEEMQRDDVAADTSTYNTFIDGLCKN----GYIVEAVELFRTLGILKCELDIQAYNCLIDGLCK 273 (376)
Q Consensus 208 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (376)
+.......+++... +.+...++.+...+... +...+|...+..+...+ +.++..+..++..|..
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 35566666666654 56677777777777652 33455666666655544 2255566666666654
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=8.9e-09 Score=88.04 Aligned_cols=220 Identities=14% Similarity=0.064 Sum_probs=175.2
Q ss_pred CChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042039 119 PNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLF 198 (376)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 198 (376)
|--..-..+...+...|-...|..++++... |...+.+|...|+..+|..+..+..+ -+|++..|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 3333445677888889999999999987653 56678899999999999999988887 367888888888
Q ss_pred HHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChH
Q 042039 199 LGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLE 278 (376)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (376)
.......-+++|.++.+..... +-..+.....+.++++++.+.++...+.+ +....+|..++.+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8777777788888887665332 22223333445789999999999887766 447789999999999999999
Q ss_pred HHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 279 IALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
.|.+.|...... -|.+...|+.+..+|.+.++-.+|...+.++.+.+ ..+..+|...+......|.+++|.+.+.++.
T Consensus 537 ~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999999988765 45567899999999999999999999999999887 4466778777778889999999999999887
Q ss_pred h
Q 042039 359 E 359 (376)
Q Consensus 359 ~ 359 (376)
+
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 4
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.18 E-value=4e-08 Score=89.92 Aligned_cols=234 Identities=14% Similarity=0.088 Sum_probs=150.0
Q ss_pred chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhH
Q 042039 85 SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN-----AFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSY 159 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (376)
+...|-..+......++.++|.++.++++.. +.+. ...|..+++.-...|.-+...++|+++.+.. ..-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4456666777777777777777777777653 2111 3456666666666677777777777776652 234566
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHh
Q 042039 160 NILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVA-ADTSTYNTFIDGLCK 238 (376)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 238 (376)
..|...|.+.+.+++|.++++.|.++ ..-....|...+..+.+.++-+.|..++.++++.-.+ .........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777777777777777777777775 3345667777777777777777777777777665211 133445556666677
Q ss_pred CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCH--HHHHHHHHHHHccCChhHHH
Q 042039 239 NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADV--VTYNIMIHGLCNDGQMDKAH 316 (376)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~ 316 (376)
.|+.+.+..+|+......++ ....|+..++.-.+.|+.+.++.+|+++...++++-. ..|...+..=-..|+-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 77777777777777665432 5667777777777777777777777777766655432 23344444334455555444
Q ss_pred HHHHHHH
Q 042039 317 DLFLDME 323 (376)
Q Consensus 317 ~~~~~~~ 323 (376)
.+=.++.
T Consensus 1692 ~VKarA~ 1698 (1710)
T KOG1070|consen 1692 YVKARAK 1698 (1710)
T ss_pred HHHHHHH
Confidence 4444443
No 100
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=4.3e-08 Score=76.98 Aligned_cols=327 Identities=12% Similarity=0.123 Sum_probs=183.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH-H
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV-I 92 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 92 (376)
.++-.-..+.....+.++-++-....+.+... .+--.+|.......-.+++|+++|.+.+.. .|.-...+. +
T Consensus 119 k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ 191 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYM 191 (557)
T ss_pred CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHH
Confidence 33344444455556667766666665555432 233445566666666788999999888775 334444443 3
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHh--cCcHH-------------------------------
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPN-AFTYSTLMDGFCL--TGKIN------------------------------- 138 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~------------------------------- 138 (376)
.-+|.+..-++-+.+++.-.++. .|| ....+..+....+ .|+..
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 44667777788888888777765 233 3333322222221 12211
Q ss_pred --HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcc-------chHH
Q 042039 139 --RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH-------QVEH 209 (376)
Q Consensus 139 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 209 (376)
.|++++-.+.+ .-+.+...|+-.|.+.++.++|..+.+++.. . ++.-|..-.-.....| ...-
T Consensus 270 gEgALqVLP~L~~----~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--t--tP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 270 GEGALQVLPSLMK----HIPEARLNLIIYYLNQNDVQEAISLCKDLDP--T--TPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred CccHHHhchHHHh----hChHhhhhheeeecccccHHHHHHHHhhcCC--C--ChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 11111111111 1233455677778889999999888776432 1 2222222222222223 3445
Q ss_pred HHHHHHHHHhcCCCCC-cchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccc
Q 042039 210 ALKLFEEMQRDDVAAD-TSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 210 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (376)
|.+.|+.+-.++..-| ..--..++.++.-..++++.+..+..+..--.. |......++++++..|++.+|.++|-++.
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 6666655544432222 223344555555566778877777776543322 33444567788888888888888887776
Q ss_pred ccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 289 RRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVII-FVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
...++.+..-...+.++|.+.+.++.|.+++-++.. +.+..+ ...+..-|.+.+++--|-+.|+.+....
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 554443344445567788888888888777655432 223333 3333456777777777777777776543
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.6e-07 Score=77.75 Aligned_cols=321 Identities=14% Similarity=0.049 Sum_probs=219.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
++|...|..-..+|...|++++|++=-.+-.+.+ |.=+..|...+.++.-.|++++|+..|.+-++.... +...+..+
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl 110 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGL 110 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhH
Confidence 4577888888889999999999988777666653 333678889999999999999999999888775322 44444444
Q ss_pred HHHHHhC---C---------------------------------------------ChHHHHHHHHHHHh--------c-
Q 042039 93 MDELCKN---G---------------------------------------------KMDEASRLLDLMVQ--------R- 115 (376)
Q Consensus 93 ~~~~~~~---~---------------------------------------------~~~~a~~~~~~~~~--------~- 115 (376)
..++... + +........-.+.. .
T Consensus 111 ~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 111 AQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred HHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 4443111 0 00000000000000 0
Q ss_pred ------CCCCC---------h-------------hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042039 116 ------DVRPN---------A-------------FTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYC 167 (376)
Q Consensus 116 ------~~~~~---------~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (376)
+..|. . .-...+++...+..++..|.+.+....... .+..-++....+|.
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~ 268 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYL 268 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHH
Confidence 01110 0 113456677777888999999999988875 56667788888999
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCHhH-------HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcch------------
Q 042039 168 KNKEVEEALSLYREMVSKGIKPTVVT-------YNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTST------------ 228 (376)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------ 228 (376)
..|.+.+.........+.|.. ...- +..+..++.+.++++.++..|.+.+.....|+...
T Consensus 269 e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~ 347 (539)
T KOG0548|consen 269 ERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEA 347 (539)
T ss_pred hccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Confidence 999988888888777665422 2222 23344566677888888888887765543332211
Q ss_pred -------------HHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCC
Q 042039 229 -------------YNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVAD 295 (376)
Q Consensus 229 -------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (376)
...-+..+.+.|++..|+..|.+++... +-|...|...+.+|.+.|.+..|++-.+...+. .++.
T Consensus 348 e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~ 425 (539)
T KOG0548|consen 348 ERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNF 425 (539)
T ss_pred HHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchH
Confidence 1222455778999999999999999887 448999999999999999999999988887776 4556
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-HHHHHHHHHHh
Q 042039 296 VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNV-IIFVTLIHGFV 342 (376)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 342 (376)
...|..=+.++....+|++|.+.|++.++.+ |+. .....+.++..
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 6777777888888899999999999999864 443 33344444333
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.16 E-value=4.8e-08 Score=89.41 Aligned_cols=251 Identities=12% Similarity=0.042 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCC---ChhhHHHHHHHHHccCcHHHHHH
Q 042039 102 MDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESM-GCKH---DDVSYNILINGYCKNKEVEEALS 177 (376)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 177 (376)
.+.|.++-+.++.. +.....|...+..+...++.++|.++.+++... ++.- -...|.++++.-..-|.-+...+
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 33444444444332 334677888899999999999999999988653 1111 12356677777777777788889
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC
Q 042039 178 LYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC 257 (376)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (376)
+|+++.+. ......|..|...|.+.+.+++|.++++.|.+.- ......|...+..+.++++-+.|..++.++...-+
T Consensus 1519 VFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1519 VFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 99998884 3345678889999999999999999999998873 35678899999999999999999999999876432
Q ss_pred C-chHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH--HHH
Q 042039 258 E-LDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNV--IIF 334 (376)
Q Consensus 258 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 334 (376)
. -........+..-.+.|+.+.+..+|+..+.. .|--...|+.++..-.+.|+.+.++.+|+++.+.++.|-. ..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 2 13445555666778899999999999988876 5556788999999999999999999999999988777643 456
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHH
Q 042039 335 VTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
...+..--+.|+-..+..+=.++.
T Consensus 1675 KkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHH
Confidence 666665556677665554444433
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.15 E-value=1.4e-08 Score=79.91 Aligned_cols=187 Identities=9% Similarity=-0.019 Sum_probs=115.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCh---hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCch--Hh
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDV---VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSV--VT 88 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 88 (376)
.....+..+...+...|++++|...|+++.... |.+. .++..++.++...|++++|...++++.+..+.... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345566777777777788888888887776653 2222 45667777777778888888888877765332111 13
Q ss_pred HHHHHHHHHhC--------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHH
Q 042039 89 FNVIMDELCKN--------GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYN 160 (376)
Q Consensus 89 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (376)
+..+..++... |+.++|.+.++.+.+... .+......+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 44445555543 567777777777776531 12222211111100 000 00 01123
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 161 ILINGYCKNKEVEEALSLYREMVSKGI--KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
.+...+.+.|++++|+..++.+.+... +.....+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778888999999999988887521 123567888888899999999999888877654
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=5.2e-07 Score=85.79 Aligned_cols=338 Identities=12% Similarity=-0.044 Sum_probs=204.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
.....+...|++.+|...+...... ..-..............|+++.+..+++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344455566666555544333211 00011222233445566787777777766522111112223344455667889
Q ss_pred ChHHHHHHHHHHHhcCC------CCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHc
Q 042039 101 KMDEASRLLDLMVQRDV------RPN--AFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDD----VSYNILINGYCK 168 (376)
Q Consensus 101 ~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 168 (376)
+++++..++......-. .+. ......+...+...|+++.|...++.........+. .....+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999988765311 111 122233445567889999999999998763211121 244567777888
Q ss_pred cCcHHHHHHHHHHHHHCCC---CC--CHhHHHHHHHHHHhccchHHHHHHHHHHHhc----CCCC---CcchHHHHHHHH
Q 042039 169 NKEVEEALSLYREMVSKGI---KP--TVVTYNTLFLGLFEIHQVEHALKLFEEMQRD----DVAA---DTSTYNTFIDGL 236 (376)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~ 236 (376)
.|++++|...+++...... .+ ...+...+...+...|+++.|...+++.... +... ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 9999999999998875311 11 1234556677888999999999998876553 2111 122344556667
Q ss_pred HhCCCHHHHHHHHHHhccc----CCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccC--CCCCHH--HH--HHHHHHH
Q 042039 237 CKNGYIVEAVELFRTLGIL----KCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV--LVADVV--TY--NIMIHGL 306 (376)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~ 306 (376)
...|++++|...+...... +.......+..++..+...|+++.|...+..+.... ...... .. ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7889999999998887442 111123455567778889999999999988764321 111111 00 1122344
Q ss_pred HccCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 307 CNDGQMDKAHDLFLDMEENAVAPN---VIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
...|+.+.|...+........... ...+..+..++...|++++|...+++..+.
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 568899999998877654221111 112445677888999999999999988753
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.11 E-value=1.2e-07 Score=85.70 Aligned_cols=242 Identities=10% Similarity=0.115 Sum_probs=136.8
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH
Q 042039 12 CKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV 91 (376)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (376)
-+.+...|..|+..+...+++++|.++.+...+.. |.....|..++..+.+.++..++.-+ .+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-------------- 89 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL-------------- 89 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh--------------
Confidence 34556677777777777777777777777665553 43445555555566666665544433 22
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE 171 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (376)
+.......++.-...++..+... .-+..++..++.+|-+.|+.++|..+|+++.+.. +.++.+.+.++..|... +
T Consensus 90 -l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 -IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22222233333333344444442 2244567777777777888888888888887776 66777777777777777 7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHH
Q 042039 172 VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRT 251 (376)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (376)
.++|.+++.++... +...+++..+..+|.++.... +.+...+..+.+.....-
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~----------- 217 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR----------- 217 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh-----------
Confidence 77777777776653 444556666666666666553 222222222222111110
Q ss_pred hcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHH
Q 042039 252 LGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLC 307 (376)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (376)
+..--..++..+-..|...++++++..+++.+.+. .+.|......++.+|.
T Consensus 218 ----~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ----EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH-DNKNNKAREELIRFYK 268 (906)
T ss_pred ----ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-CCcchhhHHHHHHHHH
Confidence 11112334444555556666666666666666655 2334445555555554
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=1.5e-08 Score=86.67 Aligned_cols=221 Identities=11% Similarity=0.109 Sum_probs=169.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
+|--..=..+.+.+...|-...|+.+|++.. .|..++.+|...|+..+|..+..+.++. +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444556778888899999999988765 4666788888899889998888887773 6677777777
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
+......--+++|.++.+..-. .+-..+.......++++++.+.|+.-...+ +....+|..++.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 7766555556777776655432 233344444555788999999998888776 66778888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 173 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
+.|.+.|...... -+.+...|+++..+|.+.++..+|...+.+..+.+ ..+...+...+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999888874 23357789999999999999999999999998887 566777777788888899999999988887
Q ss_pred cc
Q 042039 253 GI 254 (376)
Q Consensus 253 ~~ 254 (376)
..
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 54
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.08 E-value=8.6e-08 Score=72.39 Aligned_cols=152 Identities=11% Similarity=0.125 Sum_probs=103.5
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChH
Q 042039 24 DGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMD 103 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (376)
-.|...|+++......+.+... .. .+...++.+++...+++.++.++. +...|..+...+...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~---~~---------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP---LH---------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc---cc---------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHH
Confidence 3577778877765444322211 00 111255667777777777776433 6777888888888888888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCc--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 042039 104 EASRLLDLMVQRDVRPNAFTYSTLMDGF-CLTGK--INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYR 180 (376)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (376)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..++..+.+.|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888764 33566777777653 56666 478888888888776 5677778888888888888888888888
Q ss_pred HHHHCCCCCCH
Q 042039 181 EMVSKGIKPTV 191 (376)
Q Consensus 181 ~~~~~~~~~~~ 191 (376)
++++. .+|+.
T Consensus 169 ~aL~l-~~~~~ 178 (198)
T PRK10370 169 KVLDL-NSPRV 178 (198)
T ss_pred HHHhh-CCCCc
Confidence 88775 33443
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.07 E-value=1e-07 Score=71.90 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 042039 125 STLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI 204 (376)
Q Consensus 125 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (376)
..+...+...|+-+....+........ +.+......++....+.|++..|+..++++... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 344444444455444444444433221 333334444555555555555555555555443 234455555555555555
Q ss_pred cchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 042039 205 HQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELF 284 (376)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (376)
|+++.|..-|.+..+.. +.++..++.++..+.-.|+.+.|..++........ -+..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555554442 33444455555555555555555555555444331 24444455555555555555555544
Q ss_pred hc
Q 042039 285 RS 286 (376)
Q Consensus 285 ~~ 286 (376)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 33
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.07 E-value=1.7e-07 Score=84.74 Aligned_cols=241 Identities=14% Similarity=0.111 Sum_probs=173.2
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL 127 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (376)
+.+...+..|+..+...+++++|.++.+..++..+. ....|..++..+.+.++...+..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 446788999999999999999999999987776322 344555555567777775554444 23
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccch
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQV 207 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (376)
+.......++....-++..+... +.+..++..++.+|-+.|+.++|..+|+++++.. +-++.+.+.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33333344454444444455543 3455688899999999999999999999999975 55788999999999988 99
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcc
Q 042039 208 EHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSL 287 (376)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (376)
++|.+++.++... +...+++.++.++|..+....+. +...+..+.+.....-.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~---------- 219 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREF---------- 219 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhcc----------
Confidence 9999999888664 66677899999999999877533 444444444433222111
Q ss_pred cccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 042039 288 PRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFV 342 (376)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (376)
.--..++..+...|...++++++..+++.+++.... |......++.+|.
T Consensus 220 -----~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 -----TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -----chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 113445667778888999999999999999987544 6667777888776
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=8.9e-08 Score=75.38 Aligned_cols=187 Identities=12% Similarity=0.018 Sum_probs=131.8
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-C-chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCh---hh
Q 042039 49 PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ-P-SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNA---FT 123 (376)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 123 (376)
.....+..++..+...|++++|...|++++...+. | ...++..+..++...|++++|...++++++.... +. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHH
Confidence 45677888889999999999999999999876332 1 1246677888999999999999999999876421 22 24
Q ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHH
Q 042039 124 YSTLMDGFCLT--------GKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYN 195 (376)
Q Consensus 124 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 195 (376)
+..+..++... |+++.|.+.++.+.... |.+...+..+..... .... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR-------L-------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH-------H-------HHHHH
Confidence 55666666554 67888888888887764 333223322211111 0000 0 01123
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 196 TLFLGLFEIHQVEHALKLFEEMQRDDV--AADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
.+...+.+.|++++|...+..+..... +.....+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778999999999999999987631 223568899999999999999999999887654
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.05 E-value=5.9e-06 Score=68.95 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCc-hHHHHHHHHHHHHhCCChHHHHHHHh
Q 042039 207 VEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCEL-DIQAYNCLIDGLCKSGRLEIALELFR 285 (376)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (376)
.+....++++++......-.-+|..++..-.+..-...|..+|.++.+.+..+ +..+..+++..++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45556666666554333344567778888888888999999999998877666 5666777777665 688999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 286 SLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN--VIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.-.+. ...++......+.-+...++-..|..+|++....++.|+ ..+|..++..-..-|+...+.++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 86665 455566667788888899999999999999998865554 57899999988889999999999888764
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=1.8e-07 Score=70.59 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=122.3
Q ss_pred chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 85 SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILIN 164 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (376)
|... ..+...+...|+-+....+........ +.+.......+....+.|++..|...+++..... |+|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 556667777777777777777655432 3345555667888888888888888888887776 778888888888
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHH
Q 042039 165 GYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVE 244 (376)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (376)
+|.+.|++++|..-|.+..+. .+-++...+.+...+.-.|+.+.|..++....... +-+..+-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 888888888888888888875 23356677888888888888888888888877664 4467777888888888888888
Q ss_pred HHHHHHHhc
Q 042039 245 AVELFRTLG 253 (376)
Q Consensus 245 a~~~~~~~~ 253 (376)
|.++...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 888766543
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.7e-07 Score=81.69 Aligned_cols=309 Identities=15% Similarity=0.101 Sum_probs=175.0
Q ss_pred ChhhHHHHHH--HHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-C--------CC
Q 042039 15 NTVTYNTIID--GLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ-G--------VQ 83 (376)
Q Consensus 15 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 83 (376)
|..+-.++++ .|...|+.+.|.+-.+.++ +...|..+...|.+..+++-|.-.+-.|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555553 4667899999988877666 4468899999999998888777666555331 0 11
Q ss_pred CchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 042039 84 PSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILI 163 (376)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 163 (376)
|+ .+-....-.....|.+++|..+|++..+. ..+-..|...|.+++|.++-+.-.... -..+|....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 21 22233344556788899999999887654 234455667788888888766543322 123566666
Q ss_pred HHHHccCcHHHHHHHHHHHH----------HCC---------CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC
Q 042039 164 NGYCKNKEVEEALSLYREMV----------SKG---------IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA 224 (376)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (376)
..+...+|.+.|++.|++.. ... -..+...|......+...|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 66677778888887776431 110 112344555556666667777777777766543
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc----------CC--
Q 042039 225 DTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR----------VL-- 292 (376)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~-- 292 (376)
|..+++..+-.|+.++|-++-++- .|......+++.|...|++.+|..+|.++... +.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD 1010 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 233333444445555555444431 13344445555555555555555555443210 00
Q ss_pred ----------CCC-----------HHHHHHHHHHHHccCChhHHHHHHHH--------HHHc--CCCCcHHHHHHHHHHH
Q 042039 293 ----------VAD-----------VVTYNIMIHGLCNDGQMDKAHDLFLD--------MEEN--AVAPNVIIFVTLIHGF 341 (376)
Q Consensus 293 ----------~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~~~ 341 (376)
+.| ..-+...+..|-+.|.+.+|+++.=+ ++.. ....|+...+.-...+
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFF 1090 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 000 00112233345566666666554211 1111 2234566666666777
Q ss_pred hhcCChhhHHHHHHHH
Q 042039 342 VRINKPSKVIELLHKM 357 (376)
Q Consensus 342 ~~~g~~~~a~~~~~~~ 357 (376)
....++++|..++-..
T Consensus 1091 ~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 7777777777665444
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.03 E-value=3.3e-08 Score=74.60 Aligned_cols=126 Identities=10% Similarity=0.104 Sum_probs=107.8
Q ss_pred cCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH-HhCCC--hHHH
Q 042039 29 EGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL-CKNGK--MDEA 105 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 105 (376)
.++.++++..++...+.+ |.+...|..++..|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566788888888888776 889999999999999999999999999999997544 778888888864 67777 5999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhh
Q 042039 106 SRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVS 158 (376)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (376)
..++++.++.+ +.+..++..++..+...|++++|...|+++.+.. +|+..-
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 99999999985 4478899999999999999999999999999886 454433
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=9e-07 Score=77.36 Aligned_cols=192 Identities=16% Similarity=0.056 Sum_probs=121.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC--------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGEN--------INPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS 85 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (376)
.+...|..+.+.|.+..+++-|.-.+-.|.... ...+...=..........|-+++|..+|.+-.+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 345689999999999999888876666654321 011112223344445677889999999988755
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHh----------cC----
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMES----------MG---- 151 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~---- 151 (376)
|..+=..|-..|.+++|.++-+.--+. . =..||...+..+-..++.+.|++.|++... ..
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 234445677788888888776533221 1 135677777777778888888888776321 11
Q ss_pred -----CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC--------------------CCCCHhHHHHHHHHHHhccc
Q 042039 152 -----CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKG--------------------IKPTVVTYNTLFLGLFEIHQ 206 (376)
Q Consensus 152 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~ 206 (376)
...+...|.-.+...-..|+.+.|+.+|..+.+.- -..|......+.+.|...|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 12345566667777778888899988888776520 01133444556666666667
Q ss_pred hHHHHHHHHHH
Q 042039 207 VEHALKLFEEM 217 (376)
Q Consensus 207 ~~~a~~~~~~~ 217 (376)
+.+|..+|.+.
T Consensus 983 v~~Av~FfTrA 993 (1416)
T KOG3617|consen 983 VVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHH
Confidence 77776666554
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.00 E-value=1.5e-07 Score=83.56 Aligned_cols=165 Identities=11% Similarity=0.068 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCchHhHHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV-QPSVVTFNVIMDE 95 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 95 (376)
..|..|...|....+...|...|+..-+.+ +.+..........|++..+++.|..+.-..-+... ..-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 357777777777777778888888777765 55677777788888888888888777333222110 0012233344445
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
|.+.++...+..-|+...+.+ +.|...|..++.+|..+|++..|.++|.++.... |.+...-.......+..|.+.+|
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHH
Confidence 667777777887777777664 3467788888888888888888888888877664 33333333344455667777777
Q ss_pred HHHHHHHHH
Q 042039 176 LSLYREMVS 184 (376)
Q Consensus 176 ~~~~~~~~~ 184 (376)
+..+...+.
T Consensus 650 ld~l~~ii~ 658 (1238)
T KOG1127|consen 650 LDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH
Confidence 777766543
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=7.9e-08 Score=68.68 Aligned_cols=94 Identities=9% Similarity=-0.047 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCK 168 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (376)
+..+...+...|++++|...|+.++... +.+...+..++.++...|++++|...|+++.... |.+...+..++.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555555566666666666655543 3345555556666666666666666666665554 4455555566666666
Q ss_pred cCcHHHHHHHHHHHHH
Q 042039 169 NKEVEEALSLYREMVS 184 (376)
Q Consensus 169 ~~~~~~a~~~~~~~~~ 184 (376)
.|++++|+..|+..++
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666555
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=7.6e-08 Score=68.75 Aligned_cols=122 Identities=14% Similarity=0.011 Sum_probs=87.3
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 36 KALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
..++++..+.+ | ..+..+...+...|++++|...|+.+....+. +...|..+..++...|++++|...|+.....
T Consensus 13 ~~~~~~al~~~--p--~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--P--ETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34556665542 2 23556677778888888888888888776433 6777788888888888888888888888876
Q ss_pred CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 116 DVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILIN 164 (376)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (376)
+ +.+...+..++.++...|++++|...|+...... |.++..+.....
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~ 134 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQN 134 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4 4467778888888888888888888888887765 445555544443
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=1.7e-07 Score=83.81 Aligned_cols=146 Identities=9% Similarity=0.050 Sum_probs=119.4
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL 127 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (376)
+.++..+..|.....+.|++++|..+++.+.+..+. +......++..+.+.+++++|...+++.+... +-+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 556888889999999999999999999999886433 56678888889999999999999999999875 3357778888
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTL 197 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (376)
..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+. ..+....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 889999999999999999998843 566888999999999999999999999998875 23334444433
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=3.4e-07 Score=81.91 Aligned_cols=135 Identities=12% Similarity=0.097 Sum_probs=81.2
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHH
Q 042039 153 KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTF 232 (376)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (376)
+.++..+..|..+..+.|.+++|..+++.+.+. .+-+......++..+.+.+++++|...+++..... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 344566666666666666666666666666663 12234555556666666666666666666666554 4455556666
Q ss_pred HHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 233 IDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
+.++.+.|++++|..+|+++...+ +-+..++..++.++...|+.++|...|+.+.+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666666533 224556666666666666666666666665544
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.9e-06 Score=64.75 Aligned_cols=161 Identities=15% Similarity=0.063 Sum_probs=75.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 042039 91 VIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK 170 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (376)
.++-+....|+.+-|...++++...- +-+..+-..-+-.+-..|++++|.++++.+.+.+ |.+..++-.-+.+.-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33444445555555555555554442 2222222222223334455555555555555544 334444444444444444
Q ss_pred cHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCC---CHHHHHH
Q 042039 171 EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNG---YIVEAVE 247 (376)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 247 (376)
+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++-.. |.++..+..+...+.-.| +...+.+
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555555555544 34455555555555555555555555555554442 333334444444333222 3344455
Q ss_pred HHHHhccc
Q 042039 248 LFRTLGIL 255 (376)
Q Consensus 248 ~~~~~~~~ 255 (376)
+|.+..+.
T Consensus 213 yy~~alkl 220 (289)
T KOG3060|consen 213 YYERALKL 220 (289)
T ss_pred HHHHHHHh
Confidence 55554443
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.1e-06 Score=66.47 Aligned_cols=235 Identities=12% Similarity=0.033 Sum_probs=99.7
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChH
Q 042039 24 DGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMD 103 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (376)
+-+.-.|++..++..-+..... +.+...-..+.++|...|++.....-. ... -.|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI---~~~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEI---KEG-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccc---ccc-cCChHHHHHHHHHHhhCcchhH
Confidence 3444456666665554444332 123334444555555555544433222 111 1223333333333222233333
Q ss_pred HHHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 104 EASR-LLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 104 ~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
+... +.+.+.......+......-+..|++.|++++|++...... +..+...=..++.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22223222222222222333444555555555555554411 2222222233444455555555555555
Q ss_pred HHCCCCCCHhHHHHHHHHHHh----ccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCC
Q 042039 183 VSKGIKPTVVTYNTLFLGLFE----IHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCE 258 (376)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (376)
.+. .+..+.+.|..++.+ .+....|.-+|+++.+. .+|++.+.+..+.++...|++++|..+++.+......
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 542 133444444444432 23344555555555443 2445555555555555555555555555555444322
Q ss_pred chHHHHHHHHHHHHhCC
Q 042039 259 LDIQAYNCLIDGLCKSG 275 (376)
Q Consensus 259 ~~~~~~~~l~~~~~~~~ 275 (376)
++.+...++..-...|
T Consensus 240 -dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLG 255 (299)
T ss_pred -CHHHHHHHHHHHHHhC
Confidence 3444444443333333
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.9e-06 Score=65.23 Aligned_cols=251 Identities=13% Similarity=0.051 Sum_probs=174.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcH
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKI 137 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (376)
++-+.-.|.+..++..-....... .+...-..+.++|...|++.....- +... -.|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchh
Confidence 455556788888877766654432 3555566677888888887654332 2222 234444555555544444554
Q ss_pred HHHH-HHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHH
Q 042039 138 NRAE-ELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEE 216 (376)
Q Consensus 138 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (376)
+.-. ++.+.+.......+......-+..|.+.+++++|++...... +......-...+.+..+.+.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 444445444333444455556678999999999999988722 344445556677788999999999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHh----CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCC
Q 042039 217 MQRDDVAADTSTYNTFIDGLCK----NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVL 292 (376)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (376)
|...+ +..+.+.++.++.+ .+....|.-+|+++.+.- +|++.+.+..+.++...|++++|..+++.+... .
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-d 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-D 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-c
Confidence 98754 66778878888765 456899999999998744 679999999999999999999999999999877 4
Q ss_pred CCCHHHHHHHHHHHHccCChhH-HHHHHHHHHHc
Q 042039 293 VADVVTYNIMIHGLCNDGQMDK-AHDLFLDMEEN 325 (376)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 325 (376)
..++.+...++.+-...|...+ ..+.+.++...
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 5577888777777777776654 45666666654
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.92 E-value=1.8e-09 Score=55.03 Aligned_cols=34 Identities=59% Similarity=0.960 Sum_probs=29.1
Q ss_pred cccCCChhhHHHHHHHHHhcCChhHHHHHHHHhh
Q 042039 10 VVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMK 43 (376)
Q Consensus 10 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 43 (376)
.|++||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678999999999999999999999999988874
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.90 E-value=9.3e-07 Score=78.74 Aligned_cols=183 Identities=12% Similarity=0.037 Sum_probs=137.4
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHH
Q 042039 31 FVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLD 110 (376)
Q Consensus 31 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 110 (376)
+...|+..|-+..+.. +.=...|..|+..|....+...|.+.|+++.+.... +...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3777777777777664 334568899999999888999999999999886433 67788889999999999999999954
Q ss_pred HHHhcCC-CCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 042039 111 LMVQRDV-RPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP 189 (376)
Q Consensus 111 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (376)
..-+... ......|....-.|...++...|...|+...... |.|...|..++.+|.+.|.+..|+++|.++... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 4433211 1113344456667788899999999999998876 778899999999999999999999999998874 44
Q ss_pred CHhHHHHH--HHHHHhccchHHHHHHHHHHHh
Q 042039 190 TVVTYNTL--FLGLFEIHQVEHALKLFEEMQR 219 (376)
Q Consensus 190 ~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 219 (376)
+ .+|... ....+..|.+.++...+..+..
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 223222 2334566777777777766544
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=3e-06 Score=63.69 Aligned_cols=189 Identities=13% Similarity=0.068 Sum_probs=138.0
Q ss_pred cCcHHHHHHHHHHHHhc---C-CCCChh-hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchH
Q 042039 134 TGKINRAEELFGSMESM---G-CKHDDV-SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVE 208 (376)
Q Consensus 134 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (376)
..+.++..+++..+... + ..++.. .|..++-+....|+.+.|...++++... ++-+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 45678888888887543 2 223332 4556666777788889999999998876 3444444444444456678899
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccc
Q 042039 209 HALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (376)
+|+++++.++..+ |.+..++-.-+...-..|+.-+|++-+....+.- ..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998887 6667777777777777888888888877776654 4488999999999999999999999999887
Q ss_pred ccCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHcC
Q 042039 289 RRVLVADVVTYNIMIHGLCNDG---QMDKAHDLFLDMEENA 326 (376)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 326 (376)
-. .|.++..+..+...+.-.| +.+.|.++|.+.++..
T Consensus 182 l~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred Hc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 65 4556677777777765554 5667888888888753
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=1.2e-05 Score=66.36 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=107.1
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCC
Q 042039 196 TLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSG 275 (376)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (376)
-....+...|+++.|+..+..+++.. |.++.........+.+.++.++|.+.++++....+. .......++.++.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcC
Confidence 33445567788888888888877763 566777777778888888888888888888776532 3667778888888888
Q ss_pred ChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHH
Q 042039 276 RLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLH 355 (376)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (376)
++.+|+.+++..... .+.|+..|..|.++|...|+..++.....+ .|...|++++|...+.
T Consensus 389 ~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHH
Confidence 888888888887765 567888888888888888887777655443 3445667777777666
Q ss_pred HHHhC
Q 042039 356 KMKEK 360 (376)
Q Consensus 356 ~~~~~ 360 (376)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 66554
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.85 E-value=3.2e-07 Score=65.28 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCK 168 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (376)
...+...+...|++++|...++.+...+ +.+...+..+..++...|++++|..+++.....+ +.+...+..+..++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3344444444555555555555544432 2234444445555555555555555555544443 3344444445555555
Q ss_pred cCcHHHHHHHHHHHHH
Q 042039 169 NKEVEEALSLYREMVS 184 (376)
Q Consensus 169 ~~~~~~a~~~~~~~~~ 184 (376)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.83 E-value=3.4e-07 Score=65.12 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=69.6
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 042039 38 LFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDV 117 (376)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 117 (376)
.++++...+ +.+......++..+...|++++|.+.++.+...+.. +...+..+..++...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344444443 334455566666666777777777777776665322 55666666667777777777777777666653
Q ss_pred CCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 042039 118 RPNAFTYSTLMDGFCLTGKINRAEELFGSMESMG 151 (376)
Q Consensus 118 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 151 (376)
+.+...+..+..++...|++++|...|+...+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3345666666667777777777777777666653
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.2e-05 Score=70.60 Aligned_cols=253 Identities=13% Similarity=0.174 Sum_probs=129.4
Q ss_pred CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHH
Q 042039 30 GFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLL 109 (376)
Q Consensus 30 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 109 (376)
++.++|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44455544444332 2344555555555555555555544221 14445555555555555555555555
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChh--------------------------hHHHHH
Q 042039 110 DLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDV--------------------------SYNILI 163 (376)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------------~~~~l~ 163 (376)
....+..-+|... ..++-+|++.++..+.++++. .|+.. -|..|.
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La 1227 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLA 1227 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHH
Confidence 5554443333322 244555555555544444331 12222 344455
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHH
Q 042039 164 NGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIV 243 (376)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (376)
..+...|++..|...-+++ .+..+|..+..+|...+.+..| +|-..++.....-+..++..|...|.++
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 5555555555555444332 2445666666666555444332 2222233344555677888888888888
Q ss_pred HHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc-CCC------CCHHHHHHHHHHHHccCChhHHH
Q 042039 244 EAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR-VLV------ADVVTYNIMIHGLCNDGQMDKAH 316 (376)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 316 (376)
+.+.+++...... ......|..++-.|.+- ++++..+.++-.-.+ +++ .....|..+...|.+-..++.|.
T Consensus 1297 ElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 8888888765443 23455666676666543 233333333222111 011 12456777777777766666553
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=1.8e-05 Score=65.50 Aligned_cols=239 Identities=13% Similarity=0.118 Sum_probs=144.1
Q ss_pred HHHHHhcCC-hhHHHHHHHHhhh---CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCCchHhHHHHHHHH
Q 042039 23 IDGLCKEGF-VDKAKALFLQMKG---ENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQG--VQPSVVTFNVIMDEL 96 (376)
Q Consensus 23 ~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 96 (376)
+..+.+.|. ...-.+.|+++.. .+-.|... +...=.-..++.++...-+++...+ ..|+...+...+...
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 344556663 4445677777763 22222221 1111122334555555555554332 133444445445444
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHH
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEAL 176 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (376)
.....-..+..++.+..+ +.-..........+...|+++.|+..++.+.... |.++..+......+.+.++.++|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 285 YEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred hccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Confidence 433333333333332222 1123344455556667788888888888877654 566666777778888888888888
Q ss_pred HHHHHHHHCCCCCC-HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 177 SLYREMVSKGIKPT-VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 177 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
+.++++... .|+ ......+..++.+.|++.+|+.+++...... +.++..|..+.++|...|+..++..-..+..
T Consensus 361 e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~-- 435 (484)
T COG4783 361 ERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY-- 435 (484)
T ss_pred HHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH--
Confidence 888888875 333 5666777788888888888888888877765 6778888888888888888777776655432
Q ss_pred CCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 256 KCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
...|++++|...+....+.
T Consensus 436 ----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 ----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ----------------HhCCCHHHHHHHHHHHHHh
Confidence 2356777777776666554
No 132
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.76 E-value=1.7e-05 Score=68.99 Aligned_cols=108 Identities=21% Similarity=0.213 Sum_probs=46.9
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHH
Q 042039 164 NGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIV 243 (376)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (376)
.+.....+|.+|+.+++.+.... .-..-|..+...|...|+++.|.++|.+. ..+...+.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 33344455555555555444431 12223444445555555555555554432 11233344555555555
Q ss_pred HHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 042039 244 EAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELF 284 (376)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (376)
.|.++-.+.. ++......|..-..-+-..|++.+|.++|
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 5555544432 11222333333333344444444444433
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=8.3e-05 Score=67.16 Aligned_cols=183 Identities=12% Similarity=0.065 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 042039 156 DVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDG 235 (376)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (376)
+.+|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+++....+....| ..-..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHH
Confidence 345666666666666666666555331 245556666666666666666666665555543222 223455556
Q ss_pred HHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc--------------------CCCCC
Q 042039 236 LCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR--------------------VLVAD 295 (376)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~ 295 (376)
|.+.++..+-++.+. .|+......++.-|...|.++.|.-+|...... ....+
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 666666555444321 234444444455555555555554444321110 00113
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 296 VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
..+|..+..+|...+.+.-| ++...++-....-...++..|...|-+++.+.+++...
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 34444444444444433322 22222233345567778888888888888888777654
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=1.6e-06 Score=62.30 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHHHHhcCCCC--chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCcHHH
Q 042039 64 ANDWNEAKRLFFEMMDQGVQP--SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN--AFTYSTLMDGFCLTGKINR 139 (376)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 139 (376)
.++...+...++.+.+..... .......+...+...|++++|...|+.+......++ ......+..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555555555542211 012223344455555555555555555555431111 1233344555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 042039 140 AEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYRE 181 (376)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (376)
|...++..... +..+..+...+.++.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555443222 23334445555566666666666655554
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=2.9e-08 Score=50.58 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=21.1
Q ss_pred CCCCcHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 326 AVAPNVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
|+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
No 136
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=2.5e-05 Score=67.98 Aligned_cols=171 Identities=20% Similarity=0.206 Sum_probs=107.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccc
Q 042039 127 LMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ 206 (376)
Q Consensus 127 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (376)
.+.+.....+|.+|+.+++.+.... .....|..+..-|...|+++.|.++|.+.- .+...+..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3445556677888888888777653 344566777788888888888888876532 23445677888888
Q ss_pred hHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhc
Q 042039 207 VEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRS 286 (376)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (376)
|+.|.++-.+... .......|..-..-.-++|++.+|.++|-.+. .|+ ..+.+|-+.|..+..+++..+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 8888877666532 23344455555556667778877777765443 333 235667777777777776665
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 042039 287 LPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDM 322 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (376)
-... .-..|...+..-+-..|+.+.|...|-++
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3221 11234445555666666666666555443
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=2.7e-06 Score=61.10 Aligned_cols=127 Identities=19% Similarity=0.232 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCch--HhHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPD---VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSV--VTFNV 91 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 91 (376)
..|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......|+. .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3455555555 3666666666666666553 222 233444556666667777777777776665422221 23344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSM 147 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 147 (376)
+...+...|++++|+..++..... ......+...+.++...|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566666677777777776553322 223445556666677777777777766653
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=2.9e-06 Score=70.44 Aligned_cols=127 Identities=15% Similarity=0.129 Sum_probs=101.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
..-..|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++..+|.+++++.++.. +.+.......+..+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556677777889999999999988763 33 44557788888888889999999888763 44667777778888
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 132 CLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
...++++.|.++.+++.... |.+..+|..|+.+|...|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 89999999999999998875 56667999999999999999999988887653
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.65 E-value=0.00017 Score=60.62 Aligned_cols=356 Identities=12% Similarity=0.136 Sum_probs=207.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
+-|..+|+.||+-+..+ .++++.+.++++...- +..+..|..-+..-...++++....+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45788999999988766 9999999999998663 6678899999999999999999999999988763 345566655
Q ss_pred HHHHHh-CCChHH----HHHHHHHHHh-cCCCCC-hhhHHHHHHHH---------HhcCcHHHHHHHHHHHHhcCCCCCh
Q 042039 93 MDELCK-NGKMDE----ASRLLDLMVQ-RDVRPN-AFTYSTLMDGF---------CLTGKINRAEELFGSMESMGCKHDD 156 (376)
Q Consensus 93 ~~~~~~-~~~~~~----a~~~~~~~~~-~~~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~ 156 (376)
+.--.+ .++... ..+.|+-.+. .|+.+- ...|...+..+ ....+++...++|+++....+..-.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 553322 233332 2333333332 343332 33455555433 3344677788888888764322111
Q ss_pred hhHHHH------HHH-------HHccCcHHHHHHHHHHHHH--CCC-------CCC--------HhHHHHHHHH------
Q 042039 157 VSYNIL------ING-------YCKNKEVEEALSLYREMVS--KGI-------KPT--------VVTYNTLFLG------ 200 (376)
Q Consensus 157 ~~~~~l------~~~-------~~~~~~~~~a~~~~~~~~~--~~~-------~~~--------~~~~~~l~~~------ 200 (376)
..|+-. ++. --+...+..|.++++++.. .|. +|. ...|..++.-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 222211 111 1123456667777766643 121 111 0112222111
Q ss_pred -------------------------------------------HHhccc-------hHHHHHHHHHHHhcCCCCCcchHH
Q 042039 201 -------------------------------------------LFEIHQ-------VEHALKLFEEMQRDDVAADTSTYN 230 (376)
Q Consensus 201 -------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 230 (376)
+...|+ .+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 223333333333221111222222
Q ss_pred HHHHHHHhCC---CHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCC-CHHHHHHHHHHH
Q 042039 231 TFIDGLCKNG---YIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVA-DVVTYNIMIHGL 306 (376)
Q Consensus 231 ~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 306 (376)
.+...--..- ..+....++.++......--.-+|..++....+..-.+.|..+|.++.+.+..+ ++.+..+++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 2222111111 234444455554432222123467777777778888999999999998776655 566667777665
Q ss_pred HccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCch--HHHHHHHh
Q 042039 307 CNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDA--SIVSMVVD 374 (376)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~ 374 (376)
+ .++..-|.++|+--+.. ...++......+..+...|+-..+..+|++....++.||. .+|..+|+
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 5 57889999999877664 2234455566677778889999999999999988666654 46666553
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=2.8e-06 Score=70.49 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=106.5
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 87 VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGY 166 (376)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (376)
.....++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..... |.+..........+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556777778899999999999999874 44 45568888888999999999999998764 66777888888999
Q ss_pred HccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHh
Q 042039 167 CKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQR 219 (376)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (376)
.+.++++.|+.+.+++... .+.+-.+|..|..+|...|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999986 344567999999999999999999999987643
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.3e-05 Score=62.48 Aligned_cols=265 Identities=11% Similarity=0.001 Sum_probs=174.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhC
Q 042039 20 NTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKN 99 (376)
Q Consensus 20 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (376)
......+.+..++..|+..+...++.. +.++..|..-+..+...|++++|.--.++-++.... .........+++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhh
Confidence 334456777788999999999988876 556777777778888888888887777665553211 122333334444444
Q ss_pred CChHHHHHHHHHH---------------HhcC-CCCChhhHHHH-HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 100 GKMDEASRLLDLM---------------VQRD-VRPNAFTYSTL-MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNIL 162 (376)
Q Consensus 100 ~~~~~a~~~~~~~---------------~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (376)
++..+|.+.++.- .... -+|....+..+ ..++.-.|++++|.+.--.+.+.+ +.+......-
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhc
Confidence 4444444433321 1111 12333333333 345667789999998888877765 3444444444
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCHh-------------HHHHHHHHHHhccchHHHHHHHHHHHhcC---CCCCc
Q 042039 163 INGYCKNKEVEEALSLYREMVSKGIKPTVV-------------TYNTLFLGLFEIHQVEHALKLFEEMQRDD---VAADT 226 (376)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 226 (376)
..++.-.++.+.+...|++.+.. .|+.. .+..-..-..+.|.+..|.+.+.+.+..+ ..++.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 55666788899999999998875 34322 22233445678899999999999988764 34455
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 227 STYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
..|........+.|+..+|+.--+.+...+.. -...+..-+.++...++|++|.+-+++..+.
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777778888999999999988887765411 2344555566777789999999999887654
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.00036 Score=62.30 Aligned_cols=225 Identities=14% Similarity=0.036 Sum_probs=139.0
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHH
Q 042039 27 CKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEAS 106 (376)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 106 (376)
...+++.+|++..+++.+.. |....+-..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 45678888888888887663 222323333344567788888888888777665544 7778888888888888888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc----------HHHHH
Q 042039 107 RLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE----------VEEAL 176 (376)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~ 176 (376)
.+|+...+. .|+......+..+|.+-+.+.+-.+.--++-+. .|..+..+-.+++.....-. ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 888888875 455667777777888877776655544444332 34555555556665544211 12344
Q ss_pred HHHHHHHHCC-CCCCHhHHHHHHHHHHhccchHHHHHHHHH-HHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 042039 177 SLYREMVSKG-IKPTVVTYNTLFLGLFEIHQVEHALKLFEE-MQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGI 254 (376)
Q Consensus 177 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (376)
+.++.+.+.+ .--+..-.......+...+.+++|..++.. ....-...+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4555555543 111222233333445566778888877733 33322233333444556667777788887777777776
Q ss_pred cC
Q 042039 255 LK 256 (376)
Q Consensus 255 ~~ 256 (376)
.+
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 65
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=1e-05 Score=56.01 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--CchHhHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENI--NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PSVVTFNVI 92 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 92 (376)
.++..++..+.+.|++++|.+.|+.+.+... +.....+..++.++...|++++|.+.|+.+....+. .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455666666777777777777777665431 111345556667777777777777777776654222 123455566
Q ss_pred HHHHHhCCChHHHHHHHHHHHhc
Q 042039 93 MDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
..++...|++++|...++++++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 66666677777777777766665
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.47 E-value=4.6e-06 Score=58.73 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=76.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (376)
+......+...+...|++++|.++|+-+....+. +..-|..|..++-..|++++|+..|......+ +.++..+..+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4556667777778888888888888888776433 56667777778888888888888888888775 346778888888
Q ss_pred HHHhcCcHHHHHHHHHHHHhc
Q 042039 130 GFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~ 150 (376)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877665
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.7e-05 Score=60.79 Aligned_cols=263 Identities=13% Similarity=0.028 Sum_probs=122.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 56 SLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
.....+.+..++..|+..+...++..+. +..-|..-+..+...++++++..-.+.-++.. +-.........+++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 3444566677888888888888887544 45566666667777788888777776665532 112334444455555555
Q ss_pred cHHHHHHHHHHHH---------------hcCC-CCChhhHHHH-HHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042039 136 KINRAEELFGSME---------------SMGC-KHDDVSYNIL-INGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLF 198 (376)
Q Consensus 136 ~~~~a~~~~~~~~---------------~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 198 (376)
+..+|.+.++... .... +|.-..+..+ ..++...|++++|.+.--..++.+ ..+......-.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg 210 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcc
Confidence 5555555444211 0000 0111112111 234444555555555555554431 11222222222
Q ss_pred HHHHhccchHHHHHHHHHHHhcCCCCCcchH---HHHHH----------HHHhCCCHHHHHHHHHHhcccC---CCchHH
Q 042039 199 LGLFEIHQVEHALKLFEEMQRDDVAADTSTY---NTFID----------GLCKNGYIVEAVELFRTLGILK---CELDIQ 262 (376)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~----------~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 262 (376)
.++...++.+.+...|++.++.+ |+.... ..... -..+.|++..|.+.|...+..+ ..++..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 33344555556666665555543 221111 11111 1223455555555555544322 122333
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 263 AYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
.|.....+..+.|+.++|+.--+.+.... +.-...+..-..++...++|++|.+-++++.+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444555555555555444444320 00011222223344444555555555555544
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.42 E-value=5.8e-06 Score=54.61 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHh
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCK 98 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (376)
|..+...+...|++++|...++++.+.. +.+...+..+..++...+++++|.+.++........ +...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4445555556666666666666665543 333455555566666666666666666665554322 33445555555555
Q ss_pred CCChHHHHHHHHHHHh
Q 042039 99 NGKMDEASRLLDLMVQ 114 (376)
Q Consensus 99 ~~~~~~a~~~~~~~~~ 114 (376)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5666666555555543
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.42 E-value=1.6e-05 Score=56.10 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=67.4
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILING 165 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (376)
......+...+...|++++|.++|+.+...+ +-+..-|..|..++-..|++.+|+..|....... +.++..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344455556667777777777777776654 3355666677777777777777777777777766 5666777777777
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 042039 166 YCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~ 185 (376)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776664
No 148
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.41 E-value=4.1e-06 Score=67.59 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHhc----C-CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhc----ccCC-CchH
Q 042039 192 VTYNTLFLGLFEIHQVEHALKLFEEMQRD----D-VAADTSTYNTFIDGLCKNGYIVEAVELFRTLG----ILKC-ELDI 261 (376)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~ 261 (376)
..|..+...|.-.|+++.|+...+.-+.. | -......+..+..+++-.|+++.|.+.|+... +.+- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34555555566666777666555432221 1 11123455666667777777777777666542 1221 1234
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhccccc----C-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 042039 262 QAYNCLIDGLCKSGRLEIALELFRSLPRR----V-LVADVVTYNIMIHGLCNDGQMDKAHDLFLDME 323 (376)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (376)
.+..+++..|.-..++++|+.++.+-+.. + ..-....+..|..+|...|..++|+.+.+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566677777777777777776552211 0 11234566777777777777777776665544
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.39 E-value=2.3e-05 Score=63.28 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhC-CCHHHHHHHHHHhccc----CCC-chHHHHHHHHHHHHhCCChHHHHHHHhcccccCCC-----CCH
Q 042039 228 TYNTFIDGLCKN-GYIVEAVELFRTLGIL----KCE-LDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLV-----ADV 296 (376)
Q Consensus 228 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 296 (376)
.+..++..|... |++++|++.|+++... +.+ .-...+..++..+.+.|++++|.++|+++...... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455566666 7888888888776432 211 11345667788888888999999988876543221 122
Q ss_pred -HHHHHHHHHHHccCChhHHHHHHHHHHHcC--CC--CcHHHHHHHHHHHhhcCChh---hHHHHHHHHHhCCCCCchHH
Q 042039 297 -VTYNIMIHGLCNDGQMDKAHDLFLDMEENA--VA--PNVIIFVTLIHGFVRINKPS---KVIELLHKMKEKKVMPDASI 368 (376)
Q Consensus 297 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~p~~~~ 368 (376)
..+...+-++...|++..|.+.+++..... .. ........|+.++- .|+.+ .++.-|+.+ .+.|.--
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d~~----~~ld~w~ 270 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVAEYDSI----SRLDNWK 270 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHTTS----S---HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHccc----CccHHHH
Confidence 233445556777888888888888887542 21 12445666777664 34444 444444433 2344444
Q ss_pred HHHHH
Q 042039 369 VSMVV 373 (376)
Q Consensus 369 ~~~ll 373 (376)
...|+
T Consensus 271 ~~~l~ 275 (282)
T PF14938_consen 271 TKMLL 275 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.38 E-value=2.8e-05 Score=53.79 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=49.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--CchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CChhhHHHHH
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVR--PNAFTYSTLM 128 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 128 (376)
++..++..+.+.|++++|.+.|+++...... .....+..+..++...|+++.|...++.+...... .....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555555566666666666665543211 01234444555555556666666666655543211 1123444555
Q ss_pred HHHHhcCcHHHHHHHHHHHHhc
Q 042039 129 DGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
.++...|+.++|...++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 151
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.38 E-value=5e-06 Score=67.08 Aligned_cols=278 Identities=14% Similarity=0.084 Sum_probs=179.0
Q ss_pred ccCCChhhHHHHH--HHHHhcCChhHHHHHHHHhhhCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHh----c
Q 042039 11 VCKPNTVTYNTII--DGLCKEGFVDKAKALFLQMKGENINPD----VVTYNSLIHGLCHANDWNEAKRLFFEMMD----Q 80 (376)
Q Consensus 11 ~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 80 (376)
+...+...+...+ +-+++.|+....+.+|+..++.| ..| ..+|..|..+|.-.+++++|+++...=+. .
T Consensus 10 ~~~q~~SCleLalEGERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l 88 (639)
T KOG1130|consen 10 RYMQDRSCLELALEGERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL 88 (639)
T ss_pred hhhhhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh
Confidence 3344445555554 45899999999999999999988 334 34577788888888999999887543211 1
Q ss_pred CCCC-chHhHHHHHHHHHhCCChHHHHHHHHHHH----hcCC-CCChhhHHHHHHHHHhcCc------------------
Q 042039 81 GVQP-SVVTFNVIMDELCKNGKMDEASRLLDLMV----QRDV-RPNAFTYSTLMDGFCLTGK------------------ 136 (376)
Q Consensus 81 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~------------------ 136 (376)
|-+. ...+-..|...+--.|.+++|.....+-+ +.|. ......+..+...|...|+
T Consensus 89 gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~ 168 (639)
T KOG1130|consen 89 GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT 168 (639)
T ss_pred cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHH
Confidence 1110 11222344555556677888766544332 2221 1234566677777765553
Q ss_pred --HHHHHHHHHHHHh----cCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHH----CCC-CCCHhHHHHHHHHHHhc
Q 042039 137 --INRAEELFGSMES----MGC-KHDDVSYNILINGYCKNKEVEEALSLYREMVS----KGI-KPTVVTYNTLFLGLFEI 204 (376)
Q Consensus 137 --~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~ 204 (376)
++.|.++|..-.+ .|- -.-..+|..|.+.|.-.|+++.|+..-+.-+. -|- ......+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 3444555543222 110 11234677888888889999999987654332 221 12356778889999999
Q ss_pred cchHHHHHHHHHHHhc----C-CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcc----cC-CCchHHHHHHHHHHHHhC
Q 042039 205 HQVEHALKLFEEMQRD----D-VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGI----LK-CELDIQAYNCLIDGLCKS 274 (376)
Q Consensus 205 ~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~ 274 (376)
|+++.|.+.|...... + -.........+...|.-..++++|+.++.+-.. .+ ..-....+.+++.++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999998765432 2 123455677788888888899999988876422 11 112456788999999999
Q ss_pred CChHHHHHHHhcccc
Q 042039 275 GRLEIALELFRSLPR 289 (376)
Q Consensus 275 ~~~~~a~~~~~~~~~ 289 (376)
|..++|+.+.+..++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999988876543
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.37 E-value=0.00023 Score=55.80 Aligned_cols=183 Identities=9% Similarity=-0.010 Sum_probs=102.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHh---HHHHHHHHHhCCChHHHHHHHHHHHhcCCCC-C-hhhH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVT---FNVIMDELCKNGKMDEASRLLDLMVQRDVRP-N-AFTY 124 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~ 124 (376)
+...+...+..+...|++++|.+.|+++....+.+ ... ...++.++.+.+++++|...++++++..... + ..++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44445556666677888888888888887763332 222 2456677788888888888888888753221 1 2222
Q ss_pred HHHHHHHHhcC---------------c---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 042039 125 STLMDGFCLTG---------------K---INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKG 186 (376)
Q Consensus 125 ~~l~~~~~~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 186 (376)
..++.++...+ + ...|...|+.+++.- |+ ..-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~-------------S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PN-------------SQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cC-------------ChhHHHHHHHHHHHHHH-
Confidence 22222211111 1 234445555555441 22 22234444444333321
Q ss_pred CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 187 IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD--DVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
-...-..+.+.|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+...+
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0111124556677777777777777777765 22334455666777777777777777766554
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.36 E-value=0.00035 Score=54.78 Aligned_cols=58 Identities=3% Similarity=-0.000 Sum_probs=42.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc--CCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 301 IMIHGLCNDGQMDKAHDLFLDMEEN--AVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
.++..|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5666788888888888888888865 223345566777788888888888888776654
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=1.3e-06 Score=56.01 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=39.0
Q ss_pred cCChhHHHHHHHHhhhCCCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHH
Q 042039 29 EGFVDKAKALFLQMKGENIN-PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASR 107 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 107 (376)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|..++++ .+.+.. +......++.++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35556666666665554311 1333444455666666666666666655 222111 22333344555556666666655
Q ss_pred HHHH
Q 042039 108 LLDL 111 (376)
Q Consensus 108 ~~~~ 111 (376)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=2.1e-06 Score=55.09 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=8.8
Q ss_pred HHHHHHhCCChHHHHHHHhc
Q 042039 267 LIDGLCKSGRLEIALELFRS 286 (376)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~ 286 (376)
++.++.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=2.5e-05 Score=65.15 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=74.9
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 22 IIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
-...+...|++++|++.|+++++.+ +.+...|..+..+|...|++++|+..+++++..... +...|..+..++...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3456777888888888888888776 667788888888888888888888888888886433 56678888888888888
Q ss_pred hHHHHHHHHHHHhcC
Q 042039 102 MDEASRLLDLMVQRD 116 (376)
Q Consensus 102 ~~~a~~~~~~~~~~~ 116 (376)
+++|...|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888763
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.1e-06 Score=45.51 Aligned_cols=33 Identities=58% Similarity=0.953 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPD 50 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 50 (376)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777776665
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.3e-06 Score=45.22 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCc
Q 042039 333 IFVTLIHGFVRINKPSKVIELLHKMKEKKVMPD 365 (376)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 365 (376)
+|+.++.+|.+.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777888888888888888888887777776
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.4e-06 Score=44.79 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINP 49 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 49 (376)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466677777777777777777777776666554
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.29 E-value=4.2e-05 Score=63.82 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 042039 57 LIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK 136 (376)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (376)
.+..+...|++++|++.|+++++.... +...|..+..++...|++++|+..++++++.. +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345555667777777777777665433 45566666666777777777777777776653 2345566666666777777
Q ss_pred HHHHHHHHHHHHhcC
Q 042039 137 INRAEELFGSMESMG 151 (376)
Q Consensus 137 ~~~a~~~~~~~~~~~ 151 (376)
+++|...|+++....
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777766654
No 161
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.29 E-value=0.0026 Score=57.09 Aligned_cols=199 Identities=13% Similarity=0.107 Sum_probs=132.3
Q ss_pred HHHHHHH--HHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 19 YNTIIDG--LCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 19 ~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
|..++.+ +.+.|+.++|..+++.....+ +.|..+...+-.+|...++.++|..+|++.... .|+......++.+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 4444444 457789999998888777665 347788888888999999999999999988875 56677777888888
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc----------HHHHHHHHHHHHhcC-CCCChhhHHHHHHH
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK----------INRAEELFGSMESMG-CKHDDVSYNILING 165 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 165 (376)
.+.+++.+-.+.--++.+. .+-+...+-.++....+.-. ..-|...++.+...+ .-.+..-.......
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 8888877666655555553 34455666666666554321 234555666665543 11122222333455
Q ss_pred HHccCcHHHHHHHHH-HHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 042039 166 YCKNKEVEEALSLYR-EMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 166 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
+...|++++|+.++. ...+.-.+.+...-+.-+..+...++|.+..++..++...+
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 567888999998884 33333233344444566677788888998888888888776
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=2.5e-05 Score=51.47 Aligned_cols=87 Identities=26% Similarity=0.281 Sum_probs=32.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
+..+...|++++|...++++.+.. +.+...+..++.++...+++++|.+.++...... +.+..++..++.++...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 333334444444444444443321 1122333333334444444444444444433332 22223333333344444444
Q ss_pred HHHHHHHHH
Q 042039 173 EEALSLYRE 181 (376)
Q Consensus 173 ~~a~~~~~~ 181 (376)
++|...+..
T Consensus 85 ~~a~~~~~~ 93 (100)
T cd00189 85 EEALEAYEK 93 (100)
T ss_pred HHHHHHHHH
Confidence 444444333
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=8.8e-05 Score=50.52 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcccCCCch--HHHHHHHHHHHHhCCChHHHHHHHhcccccCCCC---CHHHHHHHH
Q 042039 229 YNTFIDGLCKNGYIVEAVELFRTLGILKCELD--IQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVA---DVVTYNIMI 303 (376)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 303 (376)
......++-..|+.++|+.+|++....+.... ...+..++..+...|++++|..++++.... .+. +......+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHH
Confidence 44566677778888888888888877664433 456677778888888888888888877654 222 223333445
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 042039 304 HGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF 341 (376)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (376)
.++...|+.++|+..+-.... ++...|..-+..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 567778888888887766554 2333455555444
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.26 E-value=0.00037 Score=56.33 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=50.5
Q ss_pred HHHHHcc-CcHHHHHHHHHHHHHC----CCCC--CHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC-----Cc-chH
Q 042039 163 INGYCKN-KEVEEALSLYREMVSK----GIKP--TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA-----DT-STY 229 (376)
Q Consensus 163 ~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~ 229 (376)
+..|... |++++|++.|++..+. + .+ -...+..+...+.+.|++++|.++|+++....... +. ..+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3344444 4555555555544431 1 10 12334444455555555555555555554431110 01 112
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhcccCC----CchHHHHHHHHHHHHh--CCChHHHHHHHhcccc
Q 042039 230 NTFIDGLCKNGYIVEAVELFRTLGILKC----ELDIQAYNCLIDGLCK--SGRLEIALELFRSLPR 289 (376)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~ 289 (376)
...+.++...||+..|...+++.....+ .........++.++-. ...+..+..-|+.+.+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 2333344455555555555555543321 1112334444444432 2234555555555443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.26 E-value=4.1e-05 Score=56.66 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=53.4
Q ss_pred hhHHHHHHHHhh-hCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC--chHhHHHHHHHHHhCCChHHHHHH
Q 042039 32 VDKAKALFLQMK-GENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQP--SVVTFNVIMDELCKNGKMDEASRL 108 (376)
Q Consensus 32 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 108 (376)
+..+...+..+. ..+.......|..++..+...|++++|+..|++.+.....+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444443 22212234455666666666777777777777766543222 123566666666667777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHH
Q 042039 109 LDLMVQRDVRPNAFTYSTLMDGFC 132 (376)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~ 132 (376)
+++..... +.....+..+...+.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 76666542 222334444444444
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.23 E-value=6.3e-05 Score=60.51 Aligned_cols=131 Identities=10% Similarity=0.132 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhc-CCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCH-ANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
.+|..++...-+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777766443 3344455544444222 44555577777766665 33355566666666
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNA---FTYSTLMDGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
+...++.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666667777777666654 22221 25555555555566666666666555543
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.23 E-value=0.00014 Score=53.97 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=66.1
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc--hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS--VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL 127 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (376)
....+..++..+...|++++|...|++.++....+. ...+..+..++.+.|++++|...+++.++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 355677788888888888888888888876543322 3567778888888888888888888888753 3345666677
Q ss_pred HHHHHhcCcHHHHHHH
Q 042039 128 MDGFCLTGKINRAEEL 143 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~ 143 (376)
+.++...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777765554433
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.23 E-value=5.4e-05 Score=56.02 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=60.7
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRP--NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILI 163 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 163 (376)
...+..++..+...|++++|...+++.+.....+ ...++..+..++...|++++|...+++..... +.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666777777788888888888777653222 23467777777778888888888887777653 34445555666
Q ss_pred HHHH-------ccCcHHHHHHHHHH
Q 042039 164 NGYC-------KNKEVEEALSLYRE 181 (376)
Q Consensus 164 ~~~~-------~~~~~~~a~~~~~~ 181 (376)
.++. ..|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 6655 55555544444433
No 169
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.8e-06 Score=43.60 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCC
Q 042039 332 IIFVTLIHGFVRINKPSKVIELLHKMKEKKVMP 364 (376)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 364 (376)
.+|+.++.+|.+.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356777777777777777777777777777665
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=3.4e-05 Score=59.90 Aligned_cols=90 Identities=18% Similarity=0.208 Sum_probs=61.1
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHH
Q 042039 60 GLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINR 139 (376)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 139 (376)
-+.+.+++++|+..|.+++...+. |...|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++.+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777777775333 56666667777777777777777777776653 2235677777777777777777
Q ss_pred HHHHHHHHHhcC
Q 042039 140 AEELFGSMESMG 151 (376)
Q Consensus 140 a~~~~~~~~~~~ 151 (376)
|.+.|++..+..
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 777777777663
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=3.2e-05 Score=60.04 Aligned_cols=98 Identities=23% Similarity=0.295 Sum_probs=67.5
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE 174 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (376)
-..+.+++++|+..|.+.++.. +-|...|..-..+|++.|.++.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3456677777777777777763 3356666677777777777777777777777665 4556677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHH
Q 042039 175 ALSLYREMVSKGIKPTVVTYNT 196 (376)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~ 196 (376)
|++.|++.++ +.|+..+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 7777777776 4566555543
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.20 E-value=0.00014 Score=54.00 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=69.1
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN--AFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILI 163 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 163 (376)
...+..+...+...|++++|...+++.++....+. ...+..++.++.+.|++++|...+++..... +.+...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577778888889999999999999887543222 4577888888999999999999999988765 45667777788
Q ss_pred HHHHccCcHHHHHH
Q 042039 164 NGYCKNKEVEEALS 177 (376)
Q Consensus 164 ~~~~~~~~~~~a~~ 177 (376)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 88877777544443
No 173
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=7.2e-06 Score=50.32 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=40.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHh
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAN-DWNEAKRLFFEMMD 79 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 79 (376)
++.+|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666654 445566666666666666 56666666666554
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.18 E-value=0.0002 Score=62.54 Aligned_cols=142 Identities=14% Similarity=0.068 Sum_probs=91.9
Q ss_pred CCChhhHHHHHHHHhcC-----CChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhC--------CChHHHHHHHHHHHh
Q 042039 48 NPDVVTYNSLIHGLCHA-----NDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKN--------GKMDEASRLLDLMVQ 114 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 114 (376)
+.+..+|...+++.... ++...|..+|+++++..+. ....+..+..++... .+...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 66777777776654332 2366788888888776322 233444433333221 123344444444433
Q ss_pred c-CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhH
Q 042039 115 R-DVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVT 193 (376)
Q Consensus 115 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (376)
. ..+.++..+..+...+...|++++|...++++...+ |+...|..++.++...|+.++|.+.++++... .|...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 2 123345677777777777899999999999998875 57788888999999999999999999988874 444444
Q ss_pred H
Q 042039 194 Y 194 (376)
Q Consensus 194 ~ 194 (376)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.17 E-value=5.3e-05 Score=49.61 Aligned_cols=77 Identities=16% Similarity=0.359 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHhcCCCCchHhHHH
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENI-NPDVVTYNSLIHGLCHAN--------DWNEAKRLFFEMMDQGVQPSVVTFNV 91 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (376)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.++..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556666777777777777777777 677777777776665542 23345666666666666666666666
Q ss_pred HHHHHH
Q 042039 92 IMDELC 97 (376)
Q Consensus 92 l~~~~~ 97 (376)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665544
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.16 E-value=4.5e-05 Score=61.35 Aligned_cols=145 Identities=15% Similarity=0.087 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-CCCHHHHHHHHHHhcccCCCchHHHHHHHHHH
Q 042039 192 VTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK-NGYIVEAVELFRTLGILKCELDIQAYNCLIDG 270 (376)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (376)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+.- +.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 467788888888888888999998887543 4456677777666444 566666888888887653 4467778888888
Q ss_pred HHhCCChHHHHHHHhcccccCCCCCH---HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 042039 271 LCKSGRLEIALELFRSLPRRVLVADV---VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF 341 (376)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (376)
+...++.+.|..+|++.... .+++. ..|..++..=.+.|+.+.+.++.+++.+. .|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 88888888888888888765 33332 47777888778888888888888888774 34444444444333
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=6.1e-05 Score=63.06 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=76.6
Q ss_pred CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHH
Q 042039 187 IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD--DVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAY 264 (376)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 264 (376)
.+.+......++..+....+.+.+..++.+.... ....-+.+...+++.|.+.|..++++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555666666666666666677766666554 22223445556777777777777777777776666777777777
Q ss_pred HHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHcc
Q 042039 265 NCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCND 309 (376)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (376)
+.++..+.+.|++..|.++...|.......+..++...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777776665554445555554444444443
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=0.00037 Score=60.92 Aligned_cols=137 Identities=10% Similarity=0.068 Sum_probs=98.9
Q ss_pred CCCCchHhHHHHHHHHHhC-----CChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhc--------CcHHHHHHHHHH
Q 042039 81 GVQPSVVTFNVIMDELCKN-----GKMDEASRLLDLMVQRDVRPN-AFTYSTLMDGFCLT--------GKINRAEELFGS 146 (376)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 146 (376)
..+.+...|...+++.... ++...|..+|++.++.+ |+ ...+..+..++... .+...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3456778888887765432 23778999999999874 44 45555544444322 234455555555
Q ss_pred HHhcC-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 042039 147 MESMG-CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 147 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
..... .+.++..+..+.......|++++|...+++++.. .|+...|..+...+...|+.++|...+++..+.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44431 2445677888877777889999999999999985 4688899999999999999999999999998764
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.11 E-value=0.00012 Score=61.41 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHH
Q 042039 83 QPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR--DVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYN 160 (376)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (376)
+.+......++..+....+.+.+..++.++... ....-+.|...+++.|...|..+.+..++..-...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555555555555666666666666543 111223455566777777777777777777666667667777777
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 042039 161 ILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI 204 (376)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (376)
.|+..+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777666666555555555555555444443
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.10 E-value=0.00072 Score=51.64 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENI--NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
..+......+...|++.+|+..|+.+..... +-...+...++.++.+.|++++|...+++.++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455566778888888888888776521 222445666777788888888888888887775
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.10 E-value=0.0034 Score=51.02 Aligned_cols=297 Identities=14% Similarity=0.096 Sum_probs=190.5
Q ss_pred HHHHHHHHhc--CCChHHHHHHHHHHHhcCCCCchHhHHHHHH--HHHhCCChHHHHHHHHHHHhcCCCCChh--hHHHH
Q 042039 54 YNSLIHGLCH--ANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD--ELCKNGKMDEASRLLDLMVQRDVRPNAF--TYSTL 127 (376)
Q Consensus 54 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 127 (376)
|..|-.+++. .|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4455444443 46777777776665432 2334444444444 445679999999999999863 2222 23334
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-CCCCHhH--HHHHHHHHH--
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKG-IKPTVVT--YNTLFLGLF-- 202 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~-- 202 (376)
.-...+.|+.+.|..+-+..-... +.-...+...+...+..|+|+.|+++.+.-+... +.++..- -..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 444457799999999988887764 4556678888999999999999999999876642 3333221 122222211
Q ss_pred -hccchHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHH
Q 042039 203 -EIHQVEHALKLFEEMQRDDVAADT-STYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIA 280 (376)
Q Consensus 203 -~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (376)
-..+...|...-.+..+. .|+. ..-.....++.+.|+..++-.+++.+=+.. |.+..+... .+.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cH
Confidence 123455666665555554 3332 234455678899999999999999987664 444443322 2344554 33
Q ss_pred HHHHhccc--ccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh-cCChhhHHHHHHHH
Q 042039 281 LELFRSLP--RRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR-INKPSKVIELLHKM 357 (376)
Q Consensus 281 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 357 (376)
+.-+++.. ..-.+.+..+...+..+-...|++..|..--+.... ..|....|..+...-.. .|+-.++..++-+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33333322 111334677778888899999999998887777665 46788888888776544 59999999999998
Q ss_pred HhCCCCCc
Q 042039 358 KEKKVMPD 365 (376)
Q Consensus 358 ~~~~~~p~ 365 (376)
.+..-.|+
T Consensus 390 v~APrdPa 397 (531)
T COG3898 390 VKAPRDPA 397 (531)
T ss_pred hcCCCCCc
Confidence 87654543
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.09 E-value=2.2e-05 Score=47.45 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=37.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 22 IIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
+...+.+.|++++|++.|+++.+.. |.+...+..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666677777777777766665 445666666666777777777777777666654
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00049 Score=53.89 Aligned_cols=110 Identities=9% Similarity=0.084 Sum_probs=87.3
Q ss_pred HHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---cHHHHHHHHHHHHh
Q 042039 73 LFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG---KINRAEELFGSMES 149 (376)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 149 (376)
-++.-+..++. |...|..|...|...|++..|...|.+..+.. ++++..+..+..++..+. ...++..+|+++..
T Consensus 144 ~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 144 RLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 33343444333 78889999999999999999999999998874 556777777777766543 46688899999988
Q ss_pred cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 150 MGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
.+ +.++.+...|...+...|++.+|...|+.|++.
T Consensus 222 ~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 222 LD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 76 678888888889999999999999999999986
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.08 E-value=0.00041 Score=47.28 Aligned_cols=90 Identities=22% Similarity=0.175 Sum_probs=41.7
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCC--CCcchHHHHHHHHH
Q 042039 162 LINGYCKNKEVEEALSLYREMVSKGIKPT--VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVA--ADTSTYNTFIDGLC 237 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 237 (376)
+..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34444555555555555555555444332 233444455555555555555555555443210 01122222333444
Q ss_pred hCCCHHHHHHHHHH
Q 042039 238 KNGYIVEAVELFRT 251 (376)
Q Consensus 238 ~~~~~~~a~~~~~~ 251 (376)
..|+.++|+..+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 55555555555444
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=1.3e-05 Score=48.97 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=35.0
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 27 CKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
.+.|++++|+++|+++.... |.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777777777766654 446666666777777777777777777766665
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.0005 Score=53.85 Aligned_cols=111 Identities=13% Similarity=0.101 Sum_probs=92.1
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---cHHHHHHHHHHHHH
Q 042039 108 LLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK---EVEEALSLYREMVS 184 (376)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 184 (376)
-++.-+..+ +.|...|..|...|...|+++.|...|.+..+.. ++++..+..+..++.... ...++..++++++.
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 334444443 5588999999999999999999999999999886 678888888887776543 45789999999998
Q ss_pred CCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 042039 185 KGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
.+ +.+..+...+...+...|++.+|...|+.|++..
T Consensus 222 ~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 222 LD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred cC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 73 4478888889999999999999999999999985
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.06 E-value=0.0018 Score=49.42 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--CchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
...+...+..+...|++.+|.+.|+.+....+. --......++.++.+.|+++.|...++++++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666677778888888888888765222 12334556677777888888888888887765
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.03 E-value=3.6e-05 Score=47.19 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-cHHHHHHHHHHHHH
Q 042039 121 AFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK-EVEEALSLYREMVS 184 (376)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 184 (376)
..+|..++..+...|++++|+..|++..+.. |.+...+..++.++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554 344555555555555555 45555555555544
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.0023 Score=46.31 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=68.1
Q ss_pred CCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCChhhHHH
Q 042039 83 QPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGC-KHDDVSYNI 161 (376)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 161 (376)
.|+...-..+..+..+.|+..+|...|++....-..-|......+.++....+++..|...++++.+.+. ..++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4455555556666666666666666666665543344455555566666666666666666666554421 012233444
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHH
Q 042039 162 LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHA 210 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 210 (376)
+.+.+...|.+.+|...|+...+. -|+..........+.+.|+.+++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 556666666666666666666653 34444444444444555544433
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=8.3e-05 Score=48.71 Aligned_cols=76 Identities=13% Similarity=0.336 Sum_probs=48.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcC--------ChhhHHHHHHHHHhCCCCCchHHHHH
Q 042039 301 IMIHGLCNDGQMDKAHDLFLDMEENAV-APNVIIFVTLIHGFVRIN--------KPSKVIELLHKMKEKKVMPDASIVSM 371 (376)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~ 371 (376)
..+..+...+++...-.+|+.+...|+ -|+..+|+.++.+..+.. +.-+.+.+|+.|...++.|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 666666666666554421 23346677777777778888888887
Q ss_pred HHhhC
Q 042039 372 VVDLL 376 (376)
Q Consensus 372 ll~~l 376 (376)
++..|
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 77643
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.00 E-value=9.4e-06 Score=40.54 Aligned_cols=29 Identities=38% Similarity=0.736 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGEN 46 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 46 (376)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777776654
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0013 Score=50.38 Aligned_cols=178 Identities=16% Similarity=0.096 Sum_probs=89.7
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHH
Q 042039 27 CKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEAS 106 (376)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 106 (376)
...|+..+.+.-+..+... -...+.........+..++.|++-. ....+.++.++.-.+.+.-..
T Consensus 133 ~~lgnpqesLdRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~ 197 (366)
T KOG2796|consen 133 QYLGNPQESLDRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSV 197 (366)
T ss_pred HhcCCcHHHHHHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhH
Confidence 3456666665554444321 1122233333333344555554432 223344555555556666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChh-----hHHHHHHHHHccCcHHHHHHHHHH
Q 042039 107 RLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDV-----SYNILINGYCKNKEVEEALSLYRE 181 (376)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~ 181 (376)
..+.++++...+.++.....+++...+.||.+.|...|++..+..-..+.. +..+....|.-.+++..|...+.+
T Consensus 198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 666666665544455556666666666666666666666554332222222 222333445555666666666666
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 182 MVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
+...+ +.++...+.-.-+..-.|+...|.+.++.+.+.
T Consensus 278 i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 278 ILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55542 223333344444444456666666666666654
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.005 Score=53.97 Aligned_cols=241 Identities=17% Similarity=0.119 Sum_probs=149.8
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCCchH--hH----HHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ-GVQPSVV--TF----NVIMDELCKNGKMDEASRLLDLMVQRDVRPN 120 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 120 (376)
.|.+..|..+.......-.++-|...|-+.... |++.-.. +. ..-.....--|++++|+++|-++-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 577888888888877777788888777655432 2211000 00 001122233478888888887775542
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042039 121 AFTYSTLMDGFCLTGKINRAEELFGSMESMG-CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFL 199 (376)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 199 (376)
..+..+.+.|++-...++++.--... -..-..+|+.+...+.....|++|.+.|...... ...+.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 24566677788877777765421110 0112347888888888888899999888764331 34567
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHH
Q 042039 200 GLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEI 279 (376)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 279 (376)
++.+..++++...+...+ +.+...+-.++.++...|.-++|.+.+-+.. .|. ..+..|...++|.+
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHH
Confidence 777777777665554443 5667788889999999999999988776533 222 34566778888888
Q ss_pred HHHHHhcccccCCCCCHHHH--------------HHHHHHHHccCChhHHHHHHHHHHH
Q 042039 280 ALELFRSLPRRVLVADVVTY--------------NIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
|.++-+...- |...+. ..-+..+.+.|++=.|.+++.+|.+
T Consensus 897 avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 897 AVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 8888776432 122111 1223345556666666666666643
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.95 E-value=0.0025 Score=55.25 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHH--------
Q 042039 226 TSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVV-------- 297 (376)
Q Consensus 226 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------- 297 (376)
..+...+...+.+...+.-|.++|..+... ..++......++|++|..+-++..+. .|+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 344455555555566666777777666432 24555666777777777777765543 22221
Q ss_pred ---HHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 298 ---TYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 298 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
-|...-.+|.+.|+-.+|..+++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122333455566666666666666654
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.95 E-value=6.3e-05 Score=45.40 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=27.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
+..+...|++++|...|+.+.... |.+...+..++.++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555443 33444555555555555555555555555444
No 196
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=2e-05 Score=39.32 Aligned_cols=30 Identities=20% Similarity=0.614 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 042039 333 IFVTLIHGFVRINKPSKVIELLHKMKEKKV 362 (376)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 362 (376)
+|+.++.+|.+.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566677777777777777777777766653
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0051 Score=44.61 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=101.2
Q ss_pred CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC-CCCHhHHH
Q 042039 117 VRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGI-KPTVVTYN 195 (376)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 195 (376)
..|+...-..+..+....|+..+|...|++...--+-.|......+.++....+++..|...++++.+... .-++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35677777788889999999999999999988765666777888888888889999999999998887531 11244556
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 196 TLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
.+.+.+...|.+.+|..-|+..... -|+..........+.+.|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6778888899999999999988875 456665555666777888777665544333
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.84 E-value=0.00066 Score=53.73 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=51.1
Q ss_pred HhCCChHHHHHHHhcccccCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhhcCC
Q 042039 272 CKSGRLEIALELFRSLPRRVLVAD---VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAV--APNVIIFVTLIHGFVRINK 346 (376)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 346 (376)
.+.|++++|...|+.+.+. .|.+ +..+..++.+|...|++++|...|+.+.+... ......+..+...+...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 4456666666666666654 2212 24556666666667777777777666665311 1123444445555666677
Q ss_pred hhhHHHHHHHHHhC
Q 042039 347 PSKVIELLHKMKEK 360 (376)
Q Consensus 347 ~~~a~~~~~~~~~~ 360 (376)
+++|...|+++.+.
T Consensus 233 ~~~A~~~~~~vi~~ 246 (263)
T PRK10803 233 TAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666654
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=0.0001 Score=44.98 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=23.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 134 TGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
.|++++|.+.|+++.... |.+...+..++.+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555544443 33444444455555555555555555555444
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.81 E-value=0.0049 Score=44.06 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=63.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE 171 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (376)
...-+...|++++|..+|+-+...+ .-+..-+..|+.++-..+++++|...|......+ +.|+..+...+.++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3444566778888888777776654 3355566677777777777888888777776655 3555666667777777888
Q ss_pred HHHHHHHHHHHHH
Q 042039 172 VEEALSLYREMVS 184 (376)
Q Consensus 172 ~~~a~~~~~~~~~ 184 (376)
.+.|...|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777776
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.81 E-value=0.00067 Score=53.68 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--CchHhHHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPD---VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PSVVTFNVIM 93 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 93 (376)
|...+....+.|++++|+..|+.+.+.. |.+ ..++..++.+|...|++++|...|+.+.+..+. .....+..++
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3333333344566666666666665542 111 234555556666666666666666666543111 1233344444
Q ss_pred HHHHhCCChHHHHHHHHHHHhc
Q 042039 94 DELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
.++...|+.++|..+|+.+++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555556666666666655554
No 202
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.78 E-value=0.016 Score=48.29 Aligned_cols=201 Identities=13% Similarity=0.092 Sum_probs=127.0
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHh----------c--
Q 042039 153 KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQR----------D-- 220 (376)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~-- 220 (376)
+..+..|.-....+...++-+.|+...+..... .|+... .+...+.-..+-+.....|+...+ .
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~--~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~ 374 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTM--FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESES 374 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhe--eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhh
Confidence 345667776677777788888888887765542 333111 122222222232222222222110 0
Q ss_pred --CCC---------------CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC-CCchHHHHHHHHHHHHhCCChHHHHH
Q 042039 221 --DVA---------------ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK-CELDIQAYNCLIDGLCKSGRLEIALE 282 (376)
Q Consensus 221 --~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 282 (376)
+.. .-..++...+.+..+..-.+.|..+|-++.+.+ ..++...+++++..++ .|+..-|..
T Consensus 375 ~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ 453 (660)
T COG5107 375 ASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYN 453 (660)
T ss_pred hccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHH
Confidence 110 011234445555566677899999999998877 4556677777777654 788899999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 283 LFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN--VIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
+|+.-... .+.+....+..+..+...++-..|..+|+..++. +..+ ..+|..++..-...|+...+..+-++|.+.
T Consensus 454 ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 454 IFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 99876654 3444444566777788889999999999977654 2223 567888888778888888888877777653
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.76 E-value=0.0013 Score=47.33 Aligned_cols=74 Identities=9% Similarity=0.183 Sum_probs=54.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH-----hCCCCCchHHHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK-----EKKVMPDASIVSMV 372 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~~l 372 (376)
....++..+...|++++|..+++.+....+ .+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 455677778889999999999999988643 377889999999999999999999998885 34899988876543
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=97.76 E-value=0.0016 Score=46.42 Aligned_cols=93 Identities=16% Similarity=0.034 Sum_probs=70.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccC
Q 042039 231 TFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDG 310 (376)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (376)
..+.-+...|++++|..+|+-+...++. ++.-+..|+.++-..+++++|+..|....... ..|+..+...+.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 3344456788888998888888776633 66777888888888888999988887765442 345666777888888889
Q ss_pred ChhHHHHHHHHHHHc
Q 042039 311 QMDKAHDLFLDMEEN 325 (376)
Q Consensus 311 ~~~~a~~~~~~~~~~ 325 (376)
+.+.|...|+.+.+.
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999998888888773
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.75 E-value=0.00023 Score=44.13 Aligned_cols=57 Identities=9% Similarity=0.002 Sum_probs=39.8
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 042039 24 DGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQG 81 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (376)
..|.+.+++++|+++++.+...+ |.++..+...+.++...|++++|.+.|++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45666777777777777777665 5566677777777777777777777777777653
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.73 E-value=0.017 Score=47.15 Aligned_cols=290 Identities=14% Similarity=0.157 Sum_probs=176.5
Q ss_pred hHHHHHHHHHh--cCChhHHHHHHHHhhhCCCCCChhhHHHHH--HHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH--
Q 042039 18 TYNTIIDGLCK--EGFVDKAKALFLQMKGENINPDVVTYNSLI--HGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV-- 91 (376)
Q Consensus 18 ~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 91 (376)
.|.+|-.++.. .|+-..|.++-.+..+. +..|...+..++ +.-.-.|+++.|.+-|+.|.. ++.+-..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 35555555443 47777887777665432 233444444444 344456899999999999876 3333222
Q ss_pred --HHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCChh--hHHHHHHHH
Q 042039 92 --IMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMG-CKHDDV--SYNILINGY 166 (376)
Q Consensus 92 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~ 166 (376)
|.-..-+.|+.+.|.++-+..-..- +.-...+...+...+..|+++.|+++.+.-.... +.++.. .-..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 2223346788888888888776653 3346778888888999999999999988765432 222221 111122111
Q ss_pred ---HccCcHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCH
Q 042039 167 ---CKNKEVEEALSLYREMVSKGIKPTV-VTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYI 242 (376)
Q Consensus 167 ---~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (376)
.-..+...|...-.+..+ +.|+. ..-..-..++.+.|+..++-.+++.+-+....| .... +..+.+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~--lY~~ar~gd- 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIAL--LYVRARSGD- 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHH--HHHHhcCCC-
Confidence 113356666666666655 34442 223344577888899999999999888774333 3222 222334454
Q ss_pred HHHHHHHHHhc---ccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHc-cCChhHHHHH
Q 042039 243 VEAVELFRTLG---ILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCN-DGQMDKAHDL 318 (376)
Q Consensus 243 ~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~ 318 (376)
.+.+-++++. ... +.+......+.++-...|++..|..--+...+ ..|....|..|...-.. .|+-.++...
T Consensus 310 -ta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 310 -TALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred -cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 3333333332 222 22556667777788888888888877776655 35677777777766544 4888888888
Q ss_pred HHHHHHc
Q 042039 319 FLDMEEN 325 (376)
Q Consensus 319 ~~~~~~~ 325 (376)
+.+....
T Consensus 386 lAqav~A 392 (531)
T COG3898 386 LAQAVKA 392 (531)
T ss_pred HHHHhcC
Confidence 8888764
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.68 E-value=0.021 Score=47.25 Aligned_cols=82 Identities=11% Similarity=0.002 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHc---cCcHHHHHHHHHHHHHCCCCCCHhHH
Q 042039 121 AFTYSTLMDGFCLTGKINRAEELFGSMESMG---CKHDDVSYNILINGYCK---NKEVEEALSLYREMVSKGIKPTVVTY 194 (376)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 194 (376)
..+...++-+|....+++...++.+.+.... +......-...+-++.+ .|+.++|++++..+......+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3445566667888888888888888887652 12223333445556666 78888888888886665566777788
Q ss_pred HHHHHHHH
Q 042039 195 NTLFLGLF 202 (376)
Q Consensus 195 ~~l~~~~~ 202 (376)
..+++.|-
T Consensus 221 gL~GRIyK 228 (374)
T PF13281_consen 221 GLLGRIYK 228 (374)
T ss_pred HHHHHHHH
Confidence 77776654
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.64 E-value=0.021 Score=47.34 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=70.2
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHh---cCcHHHHHHHHHHHHhcCCCCChhhH
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQRD---VRPNAFTYSTLMDGFCL---TGKINRAEELFGSMESMGCKHDDVSY 159 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (376)
..+...++-+|....+++...++.+.+.... +.....+-...+-++.+ .|+.++|.+++..+......+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3444566667888999999999999998641 11123333455666667 89999999999996665557888899
Q ss_pred HHHHHHHHc---------cCcHHHHHHHHHHHHHC
Q 042039 160 NILINGYCK---------NKEVEEALSLYREMVSK 185 (376)
Q Consensus 160 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 185 (376)
..++..|-. ....++|+..|.+.-+.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 888887743 22356777777776653
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.60 E-value=0.00069 Score=41.95 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=26.4
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 130 GFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
.|.+.++++.|.++++.+...+ |.++..+...+.++...|++++|...++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555555555554443 33444444455555555555555555555544
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.55 E-value=0.00098 Score=47.97 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=46.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHh-----cCCCCChhhH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQ-----RDVRPNAFTY 124 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 124 (376)
.+...++..+...|++++|..+++.+....+- +...|..++.++...|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45566677777788888888888887776433 667777888888888888888888777653 4677766543
No 211
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.023 Score=43.37 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Q 042039 124 YSTLMDGFCLTGKINRAEELFGSME 148 (376)
Q Consensus 124 ~~~l~~~~~~~~~~~~a~~~~~~~~ 148 (376)
|.....+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334444555555555555555443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.53 E-value=0.00041 Score=43.65 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHc----CC-CCc-HHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 297 VTYNIMIHGLCNDGQMDKAHDLFLDMEEN----AV-APN-VIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
.+++.++.+|...|++++|+..|+++.+. |. .|+ ..++..+..+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666666666666666666665532 11 111 3456666666677777777777766654
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.53 E-value=0.0035 Score=46.85 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHh-----CCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHcc----------------CChhHHHHH
Q 042039 260 DIQAYNCLIDGLCK-----SGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCND----------------GQMDKAHDL 318 (376)
Q Consensus 260 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 318 (376)
+..+|..++..+.+ .|..+=....+..|.+.|+.-|..+|+.|+.++=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 34444444444432 234444444555555555555556666555554331 233558888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcC
Q 042039 319 FLDMEENAVAPNVIIFVTLIHGFVRIN 345 (376)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 345 (376)
+++|...|+-||..++..++..+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 999999999999999998888885544
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.51 E-value=0.043 Score=45.91 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHH
Q 042039 306 LCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSM 371 (376)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 371 (376)
+..+|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.++ +|+..+++.
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 4567888887665555544 6789999999999999999999999999876 566666553
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.46 E-value=0.00033 Score=44.11 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhC----CC-CCC-hhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGE----NI-NPD-VVTYNSLIHGLCHANDWNEAKRLFFEMM 78 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 78 (376)
+|+.+...|...|++++|++.|++..+. |. .|+ ..++..++.++...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666555432 10 011 3345555555555555555555555543
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.086 Score=47.04 Aligned_cols=325 Identities=12% Similarity=0.099 Sum_probs=178.9
Q ss_pred ccccCCChhhHHH-----HHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC--hHHHHHHHHHHHhcC
Q 042039 9 GVVCKPNTVTYNT-----IIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAND--WNEAKRLFFEMMDQG 81 (376)
Q Consensus 9 ~~~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 81 (376)
..|++-+..-|.. +++-+...+.|..|+++-..+...-.. +...|......+.+..+ -+++.+.+++=++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3455555555544 456677778888888887766533212 25666667777766632 223344333333322
Q ss_pred CCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC------
Q 042039 82 VQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVR----PNAFTYSTLMDGFCLTGKINRAEELFGSMESMG------ 151 (376)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 151 (376)
. .....|..+++-....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+...-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 23456777777777888888888776532221100 011223344455566666666666555543321
Q ss_pred -----CCCChhhHHHHHH---------HHHccCcHHHHHHHHH--HHHHCC-CCCCHhHHHHHHHHHHhccchH------
Q 042039 152 -----CKHDDVSYNILIN---------GYCKNKEVEEALSLYR--EMVSKG-IKPTVVTYNTLFLGLFEIHQVE------ 208 (376)
Q Consensus 152 -----~~~~~~~~~~l~~---------~~~~~~~~~~a~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~~~~~------ 208 (376)
.|.....|..+++ .|. .++-.+++..+. ...... +.+-..........+.+.....
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 1111122222211 111 111112221111 100000 1111112222333333333211
Q ss_pred ----HHHHHHHHHHhc-CCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 042039 209 ----HALKLFEEMQRD-DVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALEL 283 (376)
Q Consensus 209 ----~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (376)
+-.++.+.+... +......+.+.-+.-+...|+..+|.++-.+.. -|+...|..-+.+++..+++++-.++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 112222222221 223444566667777888999999999988875 56888888889999999999998887
Q ss_pred HhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHH
Q 042039 284 FRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLH 355 (376)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (376)
-+... ++.-|...+.+|.+.|+.++|.+++-+.... . ..+.+|.+.|++.+|.++--
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 76543 2455777889999999999999998765321 1 46677888888888876543
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.38 E-value=0.09 Score=46.66 Aligned_cols=309 Identities=15% Similarity=0.133 Sum_probs=155.0
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHH----------HHHHhcCCChHHHHHHHHHHHhcC
Q 042039 12 CKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSL----------IHGLCHANDWNEAKRLFFEMMDQG 81 (376)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~~~ 81 (376)
-.|.+..|..+.+.....-.++.|...|-+...- +.......| ...-.--|++++|.++|-.+-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 3688999999999888888889998888776543 111111111 122223478999999987775542
Q ss_pred CCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHh-----------
Q 042039 82 VQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRD-VRPNAFTYSTLMDGFCLTGKINRAEELFGSMES----------- 149 (376)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------- 149 (376)
..+..+.+.|++-...++++.--... ...-...++.+...++....|++|.+.|.....
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~l 835 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRL 835 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 22445556666665555544311100 001134455555555555555555555543211
Q ss_pred ----------cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHh
Q 042039 150 ----------MGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQR 219 (376)
Q Consensus 150 ----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (376)
..+|.+....-.+..++.+.|.-++|.+.+-+... | ...+..|...++|.+|.++-+...-
T Consensus 836 e~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l 906 (1189)
T KOG2041|consen 836 ELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQL 906 (1189)
T ss_pred HhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 12344555566666677777777766666543211 1 1234455566666666665543211
Q ss_pred cCCCCCcch--------------HHHHHHHHHhCCCHHHHHHHHHHhcc----cCCCchH-HHHHHHHHHH---------
Q 042039 220 DDVAADTST--------------YNTFIDGLCKNGYIVEAVELFRTLGI----LKCELDI-QAYNCLIDGL--------- 271 (376)
Q Consensus 220 ~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~-~~~~~l~~~~--------- 271 (376)
|...+ ....+..+.+.|+.-.|.+++.+|.+ .+.++-. .-...|...+
T Consensus 907 ----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik 982 (1189)
T KOG2041|consen 907 ----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIK 982 (1189)
T ss_pred ----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11223344556665555566555533 2222211 1111111111
Q ss_pred -----HhCCChHHHHHHHhcccccC---CC------CCHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCcHHHHHH
Q 042039 272 -----CKSGRLEIALELFRSLPRRV---LV------ADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN-AVAPNVIIFVT 336 (376)
Q Consensus 272 -----~~~~~~~~a~~~~~~~~~~~---~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 336 (376)
...|..++|..+++...-.. +. .....|..|.+--...|..+.|+..--.+.+. .+-|....|..
T Consensus 983 ~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySl 1062 (1189)
T KOG2041|consen 983 ELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSL 1062 (1189)
T ss_pred HhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHH
Confidence 23466666666554432110 00 01233444555556677888777654444332 34566667776
Q ss_pred HHHHHhhcC
Q 042039 337 LIHGFVRIN 345 (376)
Q Consensus 337 l~~~~~~~g 345 (376)
+.-+-+...
T Consensus 1063 lALaaca~r 1071 (1189)
T KOG2041|consen 1063 LALAACAVR 1071 (1189)
T ss_pred HHHHHhhhh
Confidence 654444433
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.0059 Score=45.70 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC----------------cHHHHHHH
Q 042039 120 NAFTYSTLMDGFCL-----TGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK----------------EVEEALSL 178 (376)
Q Consensus 120 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~ 178 (376)
+..+|..++..|.+ .|+.+-....+..|.+.|+..|..+|+.|++++=+.. +-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 45555555555543 3666667777777777777777777777777765411 22334455
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHh
Q 042039 179 YREMVSKGIKPTVVTYNTLFLGLFE 203 (376)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (376)
+++|...|+-||..++..++..+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 5555555555555555555544443
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.35 E-value=0.0042 Score=52.08 Aligned_cols=67 Identities=13% Similarity=-0.007 Sum_probs=53.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCh---hhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDV---VTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
+.+...|+.+..+|.+.|++++|+..|++.++.+ |.+. .+|..+..+|...|++++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456788888888888999999999998888775 3333 35888888899999999999998888875
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0079 Score=49.35 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=46.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHhc-----CCCC---------chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhh
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQ-----GVQP---------SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFT 123 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (376)
...+.+.|++..|...|++++.. +..+ -..++..+..++.+.+++.+|+...+..+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45677888888888888876553 0010 11233344444444444444444444444443 334444
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 042039 124 YSTLMDGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 124 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
...-..++...|+++.|...|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444444444444444444444444444
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.30 E-value=0.08 Score=44.39 Aligned_cols=339 Identities=13% Similarity=0.122 Sum_probs=185.8
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHH
Q 042039 11 VCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFN 90 (376)
Q Consensus 11 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (376)
.-+.|..+|..|+.-+..+|..++..++++++..- .|--+.+|...+.+-...++++....+|.+.+.... +...|.
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 34567889999999999999999999999999854 244567888888888888899999999998887644 455555
Q ss_pred HHHHHHHhCCC------hHHHHHHHHHHHh-cCCCCC-hhhHHHHHHHHH---h------cCcHHHHHHHHHHHHhcCCC
Q 042039 91 VIMDELCKNGK------MDEASRLLDLMVQ-RDVRPN-AFTYSTLMDGFC---L------TGKINRAEELFGSMESMGCK 153 (376)
Q Consensus 91 ~l~~~~~~~~~------~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~------~~~~~~a~~~~~~~~~~~~~ 153 (376)
..+.-..+.+. -....+.|+-... .++.|- ...|...+...- . +.+++.....+.++....+.
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 55543333321 1122223333332 233443 334444444322 2 23455666777777764321
Q ss_pred CChhhHHHH------HHH-----HH--ccCcHHHHHHHHHHHHH--CCCCC----CHhH-----------HHHHH-----
Q 042039 154 HDDVSYNIL------ING-----YC--KNKEVEEALSLYREMVS--KGIKP----TVVT-----------YNTLF----- 198 (376)
Q Consensus 154 ~~~~~~~~l------~~~-----~~--~~~~~~~a~~~~~~~~~--~~~~~----~~~~-----------~~~l~----- 198 (376)
.-...|.-. ++- +. ..--+-.|...++++.. .|... +..+ |...+
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 111122111 100 00 01123445555554432 11110 0111 11111
Q ss_pred ------------------------------------HHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCH
Q 042039 199 ------------------------------------LGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYI 242 (376)
Q Consensus 199 ------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (376)
..+...++-+.|...... |.+..+.....+...|.-..+.
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~lse~yel~nd~ 349 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLSEYYELVNDE 349 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHHHHHhhcccH
Confidence 111223334444443333 2233333333333444444444
Q ss_pred HHHHHHHHHhc--------------ccCC--Cc-------------hHHHHHHHHHHHHhCCChHHHHHHHhcccccC-C
Q 042039 243 VEAVELFRTLG--------------ILKC--EL-------------DIQAYNCLIDGLCKSGRLEIALELFRSLPRRV-L 292 (376)
Q Consensus 243 ~~a~~~~~~~~--------------~~~~--~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 292 (376)
+.....|+... ..+. .| -..+|...+....+..-.+.|..+|-++.+.+ .
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 44433333320 0010 01 12345556666667777899999999998877 5
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 293 VADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNV-IIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.+++..+.+++..++ .|++..|..+|+--... -||. ......+..+...++-+.|..+|+...+
T Consensus 430 ~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 430 GHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred CcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 667778888887655 67888999999876654 2343 3334555667788888888888886554
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.26 E-value=0.016 Score=48.83 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=40.3
Q ss_pred chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-h---hhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 042039 85 SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN-A---FTYSTLMDGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
+...++.+..+|...|++++|+..|++.++.+ |+ . .+|..+..+|...|+.++|.+.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556666666666677777777776666643 33 2 24666666666667777776666666654
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0084 Score=49.21 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHH
Q 042039 228 TYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLC 307 (376)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (376)
++..++.++.+.+++.+|+..-......+ +++...+..-+.++...|+++.|+..|+++++. -|.|...-..++.+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Confidence 45566667777777777777777776665 346666667777777777777777777777664 2334444444444444
Q ss_pred ccCChh-HHHHHHHHHHH
Q 042039 308 NDGQMD-KAHDLFLDMEE 324 (376)
Q Consensus 308 ~~~~~~-~a~~~~~~~~~ 324 (376)
+..++. ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 443333 33566666654
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.0091 Score=46.42 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcccccCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC-CC-cHHHHHHH
Q 042039 263 AYNCLIDGLCKSGRLEIALELFRSLPRRVLVA---DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAV-AP-NVIIFVTL 337 (376)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l 337 (376)
.|+..+ .+.+.|++..|...|...++. .|. ....+.+|+.++...|++++|...|..+.+.-. .| -+..+..|
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 344433 344567788888877777665 222 245667778888888888888888877765421 11 24566677
Q ss_pred HHHHhhcCChhhHHHHHHHHHhC
Q 042039 338 IHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777788888888888887754
No 225
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.21 E-value=0.09 Score=43.19 Aligned_cols=281 Identities=14% Similarity=0.188 Sum_probs=149.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
+|..+.......|+.+-|..+++. .|++.- -+..+...|+.+.| +.+..+.| .|| -+|..++..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHHHHH
Confidence 577788888889999999888753 233221 24456667777766 44555553 223 23444444332
Q ss_pred hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHH
Q 042039 98 KNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALS 177 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (376)
... .. +++ .++.. .|.. ..+...|++..+.+....+|.+-.+ ........+-.++.. .+.+.-..
T Consensus 68 ~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~----~~~~a~~~l~~~~~~-~~~~~~~~ 132 (319)
T PF04840_consen 68 KLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDR----FQELANLHLQEALSQ-KDVEEKIS 132 (319)
T ss_pred hCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcch----HHHHHHHHHHHHHhC-CChHHHHH
Confidence 221 11 233 23322 2221 2334455555555555555543211 111122222222222 33333333
Q ss_pred HHHHHHHCC-CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 178 LYREMVSKG-IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD-DVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
.+..+.+.- -..+......++.-..+. .++-..+.+. +......+.+..+.-+...|+...|.++-++..
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~~e~q~~L------l~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-- 204 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKLIEEQIKL------LEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK-- 204 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHH------HHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC--
Confidence 333333210 001111111111111111 1111111111 112223456666777788899988888877764
Q ss_pred CCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHH
Q 042039 256 KCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFV 335 (376)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (376)
-|+...|...+.+++..++|++-.++... + -++.-|..++.+|.+.|+..+|..+..++ + + .
T Consensus 205 --v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~~~~~~eA~~yI~k~-----~-~----~ 266 (319)
T PF04840_consen 205 --VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLKYGNKKEASKYIPKI-----P-D----E 266 (319)
T ss_pred --CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHHCCCHHHHHHHHHhC-----C-h----H
Confidence 46888999999999999999988876543 1 14567888999999999999999888772 2 1 3
Q ss_pred HHHHHHhhcCChhhHHHH
Q 042039 336 TLIHGFVRINKPSKVIEL 353 (376)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~ 353 (376)
.-+..|.+.|++.+|.+.
T Consensus 267 ~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 267 ERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 345566777777777654
No 226
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.21 E-value=0.13 Score=44.85 Aligned_cols=331 Identities=12% Similarity=0.071 Sum_probs=181.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
-..|..++.---...+.+.+..++..++..- |.--.-|......=.+.|..+.+.++|++.+.. ++.+...|......
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 3456666655445555566777777777542 333345666666667788899999999988764 55667777666554
Q ss_pred HH-hCCChHHHHHHHHHHHhc-CCC-CChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----
Q 042039 96 LC-KNGKMDEASRLLDLMVQR-DVR-PNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCK---- 168 (376)
Q Consensus 96 ~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 168 (376)
+. ..|+.+.....|+..... |.. .....|...+..-..++++.....+++++.+.....-...|.........
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 43 457777888888877763 111 12446677777777888899999999888765211111111111111111
Q ss_pred -cCcHHHHHHHHHHHHHC---------------C----CCCC---HhHHHHHHHH-------HHhccchHHHHHHHHHHH
Q 042039 169 -NKEVEEALSLYREMVSK---------------G----IKPT---VVTYNTLFLG-------LFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 169 -~~~~~~a~~~~~~~~~~---------------~----~~~~---~~~~~~l~~~-------~~~~~~~~~a~~~~~~~~ 218 (376)
....+++.++-...... + ..|. ......+... +............++..+
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 12233333322222110 0 0000 0001111111 111111222222223222
Q ss_pred hc---CCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccC
Q 042039 219 RD---DVA----ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV 291 (376)
Q Consensus 219 ~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (376)
+. .+. ++..+|...+..-...|+++.+.-++++....- ..-...|...+......|+.+-|..++....+..
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 22 111 123456666677778888888888888875322 2234566666666667788888888887766553
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhhcCChhhHH
Q 042039 292 LVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVI-IFVTLIHGFVRINKPSKVI 351 (376)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~ 351 (376)
.+..+.+...-....-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+.
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 33333333333333445678999999999888753 4432 2222233455677777777
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.016 Score=46.40 Aligned_cols=113 Identities=15% Similarity=0.037 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhccchHHH
Q 042039 135 GKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT----VVTYNTLFLGLFEIHQVEHA 210 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 210 (376)
|++.+|-..++++.+.- |.|..++...-.+|...|+.+.-...+++++.. ..++ ...-..+.-++...|-+++|
T Consensus 117 g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 44444444444444332 344444444444444444444444444444432 1111 11122222333344444444
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 042039 211 LKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFR 250 (376)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (376)
.+.-++..+.+ +.+..........+...|+..++.+...
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 44444444443 3333344444444444444444444433
No 228
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.21 E-value=0.016 Score=46.92 Aligned_cols=228 Identities=12% Similarity=0.074 Sum_probs=144.7
Q ss_pred HHhcCChhHHHHHHHHhhhCC--CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc--CCC---CchHhHHHHHHHHHh
Q 042039 26 LCKEGFVDKAKALFLQMKGEN--INPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ--GVQ---PSVVTFNVIMDELCK 98 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~ 98 (376)
+....+.++|+..|.+....- ...--.++..+..+....|.+++++..--..+.. ... .-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889998888776541 1112345666777788888887765543222211 011 123456666677766
Q ss_pred CCChHHHHHHHHHHHhc-CCCC---ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHHcc
Q 042039 99 NGKMDEASRLLDLMVQR-DVRP---NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCK-----HDDVSYNILINGYCKN 169 (376)
Q Consensus 99 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 169 (376)
..++.+++.+-..-... |..| .-.....+..++.-.+.++++++.|+.+...... ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66777777766655542 2222 1234456778888888999999999988654311 1234788999999999
Q ss_pred CcHHHHHHHHHHHHHC----CCCCC-----HhHHHHHHHHHHhccchHHHHHHHHHHHhc----CC-CCCcchHHHHHHH
Q 042039 170 KEVEEALSLYREMVSK----GIKPT-----VVTYNTLFLGLFEIHQVEHALKLFEEMQRD----DV-AADTSTYNTFIDG 235 (376)
Q Consensus 170 ~~~~~a~~~~~~~~~~----~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~ 235 (376)
.|+++|.-+..++.+. ++..- ......+.-++...|....|.+.-++..+. |- .........++..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999887776542 22211 122233445666778888888777766443 31 2234456677888
Q ss_pred HHhCCCHHHHHHHHHHhc
Q 042039 236 LCKNGYIVEAVELFRTLG 253 (376)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~ 253 (376)
|...|+.+.|+.-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 999999999988887753
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.20 E-value=0.018 Score=40.26 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENI--NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
.+..-.....+.|++++|++.|+.+..+-. +-...+...++.+|.+.+++++|...+++.++..+......|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 344445556689999999999999987731 224566778899999999999999999999987544233345444554
Q ss_pred HHh
Q 042039 96 LCK 98 (376)
Q Consensus 96 ~~~ 98 (376)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 443
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.025 Score=44.09 Aligned_cols=97 Identities=22% Similarity=0.251 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-C-chHhHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENI--NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ-P-SVVTFNVIM 93 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 93 (376)
.|+.-+..+ +.|++..|...|...++... +-...++.-|+.++...|++++|...|..+.+.-++ | -+..+..+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666544 66678888888887776631 112445556778888888888888888877775221 1 245666677
Q ss_pred HHHHhCCChHHHHHHHHHHHhc
Q 042039 94 DELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888888776
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.075 Score=42.01 Aligned_cols=142 Identities=18% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
....|++.+|..+|....... +-+......++.+|...|+.+.|..++..+..............-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344455555555555555442 1123344445555555555555555555543321111111111223333333333333
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhCC
Q 042039 176 LSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD-VAADTSTYNTFIDGLCKNG 240 (376)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 240 (376)
..+-.++-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+ -..+...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333321 2244444445555555555555555444443331 1223334444444444444
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.16 E-value=0.074 Score=41.18 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=29.2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhccchHHHHHHHHHH
Q 042039 162 LINGYCKNKEVEEALSLYREMVSKGIKPT---VVTYNTLFLGLFEIHQVEHALKLFEEM 217 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (376)
+.+.|.+.|.+..|..-++.+++. .+-. ...+..+..+|...|-.++|.+.-.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 445566666666666666666654 2111 233444455555666655555544433
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.14 E-value=0.056 Score=47.24 Aligned_cols=178 Identities=15% Similarity=0.102 Sum_probs=109.2
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcc------hHHHHHHHHH----hCCCHHH
Q 042039 175 ALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTS------TYNTFIDGLC----KNGYIVE 244 (376)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~ 244 (376)
..-+|.-++.. +|| .+..++....-.|+-+.+++.+....+.+--..+. .|...+..+. ...+.+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555553 333 34556666666788888888887766542111111 1222222222 2446778
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccC---CCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 042039 245 AVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV---LVADVVTYNIMIHGLCNDGQMDKAHDLFLD 321 (376)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (376)
|.+++..+...-+. +......-++.+...|+.++|++.|+...... .+.....+..++..+.-..+|++|.+.|..
T Consensus 252 a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 252 AEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 88888888765322 33334445677788899999999998755321 112234566777888888999999999999
Q ss_pred HHHcCCCCcHHHHHHHHH-HHhhcCCh-------hhHHHHHHHHH
Q 042039 322 MEENAVAPNVIIFVTLIH-GFVRINKP-------SKVIELLHKMK 358 (376)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~ 358 (376)
+.+.+ ..+..+|..+.. ++...|+. ++|.+++++..
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88754 234555554443 44567777 78888888765
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=97.14 E-value=0.061 Score=45.56 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHH---hcCCCCCcchHHHHHHHHHh---------CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHh
Q 042039 206 QVEHALKLFEEMQ---RDDVAADTSTYNTFIDGLCK---------NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCK 273 (376)
Q Consensus 206 ~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (376)
..+.|..+|.+.. ..+ +.....|..+..++.. ..+..+|.++.+++.+.+ +.|+.....++.+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 3567888888887 332 2234455555544432 234566778888888887 4488888888888888
Q ss_pred CCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCChhhHHH
Q 042039 274 SGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN-VIIFVTLIHGFVRINKPSKVIE 352 (376)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 352 (376)
.++++.|...|+++... .|....+|......+.-.|+.++|.+.+++..+..+.-- .......+..|+.. ..++|.+
T Consensus 351 ~~~~~~a~~~f~rA~~L-~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIH-STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhc-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 88999999999998876 344567788888888889999999999999877532211 22333344466554 5677777
Q ss_pred HHHHHH
Q 042039 353 LLHKMK 358 (376)
Q Consensus 353 ~~~~~~ 358 (376)
++-+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 765543
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=97.12 E-value=0.077 Score=44.96 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHhc-CCCCc-hHhHHHHHHHHHh---------CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 042039 66 DWNEAKRLFFEMMDQ-GVQPS-VVTFNVIMDELCK---------NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLT 134 (376)
Q Consensus 66 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (376)
..+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.++-+..++.+ +.|+.+...++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788888888822 23443 3344444333321 223456666777777765 44677777777777777
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 135 GKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
++++.|...|++....+ |....+|........-.|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 77888888888887776 556667777777777788888888888887664
No 236
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.085 Score=40.90 Aligned_cols=132 Identities=15% Similarity=0.061 Sum_probs=74.4
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcc-----hHHHH
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTS-----TYNTF 232 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l 232 (376)
+.+.++.++.-.+.+.-....+.+.++...+.++.....+++...+.|+.+.|...|+++.+..-..+.. +....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555666666666666666665444455556666666666666666666666555432222222 22233
Q ss_pred HHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 233 IDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
...|.-.+++..|...+.++...+.. ++...+.-+-+..-.|+...|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445556666666666666555422 4444454444455566777777777766654
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.085 Score=40.40 Aligned_cols=207 Identities=14% Similarity=0.148 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...|.....+|....++++|...+.+..+. ...+...|+ .. ..++.|.-+.+++.+. +--...+......
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345556666777777777777776666532 111211111 11 1234444444444432 1112334444555
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC---C--CCCCHhHHHHHHHHHHhcc
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK---G--IKPTVVTYNTLFLGLFEIH 205 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~ 205 (376)
|..+|..+.|-..+++.-+. ...-++++|+++|++.... + ...-...+..+.+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 55566655555555544321 1234556666666655432 0 0011223344445555555
Q ss_pred chHHHHHHHHHHHhc----C-CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC---CCchHHHHHHHHHHHHhCCCh
Q 042039 206 QVEHALKLFEEMQRD----D-VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK---CELDIQAYNCLIDGLCKSGRL 277 (376)
Q Consensus 206 ~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 277 (376)
.+++|...+.+-... . .......+...+..+.-..++..|..+++.-...+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 555554444322111 0 11111224444444555566666666666632211 122445556666555 35666
Q ss_pred HHHHHHH
Q 042039 278 EIALELF 284 (376)
Q Consensus 278 ~~a~~~~ 284 (376)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6655554
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.07 E-value=0.012 Score=40.65 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhccc---------------ccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 260 DIQAYNCLIDGLCKSGRLEIALELFRSLP---------------RRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
|..++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..+++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45678889999999999999999887531 122457788888999999999999999999888875
Q ss_pred c-CCCCcHHHHHHHHHHHhh
Q 042039 325 N-AVAPNVIIFVTLIHGFVR 343 (376)
Q Consensus 325 ~-~~~~~~~~~~~l~~~~~~ 343 (376)
. +++-+..+|..|++-...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 4 666678888888864433
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.05 E-value=0.092 Score=45.94 Aligned_cols=177 Identities=18% Similarity=0.213 Sum_probs=110.9
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCCch-----HhHHHHHHHHHh----CCChHHH
Q 042039 36 KALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQG-VQPSV-----VTFNVIMDELCK----NGKMDEA 105 (376)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a 105 (376)
.-+|.-+... +||. +..++....-.|+-+.+++.+.+..+.+ +.-.. -.|+..+..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3444444433 2443 4556777777788888888888876642 22111 223444433332 4567888
Q ss_pred HHHHHHHHhcCCCCChhhH-HHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 042039 106 SRLLDLMVQRDVRPNAFTY-STLMDGFCLTGKINRAEELFGSMESMG---CKHDDVSYNILINGYCKNKEVEEALSLYRE 181 (376)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (376)
.++++.+.++ -|+...| ..-.+.+...|++++|.+.|++..... .......+.-++-++.-..+|++|...+..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8999988886 4554444 345677778899999999998765321 112334566677788888999999999999
Q ss_pred HHHCCCCCCHhHHHHHH-HHHHhccch-------HHHHHHHHHHHh
Q 042039 182 MVSKGIKPTVVTYNTLF-LGLFEIHQV-------EHALKLFEEMQR 219 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 219 (376)
+.+..-. +...|.-+. .++...++. ++|.+++.++..
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8885322 344443333 334456666 788888887644
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.96 E-value=0.0023 Score=34.79 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSL 57 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 57 (376)
+|..+...|.+.|++++|+++|+++.+.. |.|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45555555556666666666666555553 4444444443
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.96 E-value=0.12 Score=40.11 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCC--CCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMDQGV--QPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
+..-+..-.+.|++++|.+.|+.+..+.+ +-...+...++.++.+.++++.|....++.++.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33334444566677777777776665421 112334445555666666777777666666654
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.88 E-value=0.053 Score=44.01 Aligned_cols=230 Identities=10% Similarity=0.053 Sum_probs=124.9
Q ss_pred HHhcCCChHHHHHHHHHHHhcC--CCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCC---hhhHHHHHHHHH
Q 042039 60 GLCHANDWNEAKRLFFEMMDQG--VQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR--DVRPN---AFTYSTLMDGFC 132 (376)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 132 (376)
-+....+.++|+..|.+.+..- ...-..++..+..+..+.|.+++++..--.-++. ..... ...|..+.+++-
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888887776541 1112234556666777777777665543222221 01111 223445555555
Q ss_pred hcCcHHHHHHHHHHHHhcC-CCC---ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHh
Q 042039 133 LTGKINRAEELFGSMESMG-CKH---DDVSYNILINGYCKNKEVEEALSLYREMVSKG-----IKPTVVTYNTLFLGLFE 203 (376)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 203 (376)
+..++.+++.+-..-.... ..+ .-.....+..++...+.++++++.|+.+.+-- ......++..+...+.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 5555556655554443321 111 11234456667777777888888887776521 11224566777777777
Q ss_pred ccchHHHHHHHHHHHhc----CCCCC-----cchHHHHHHHHHhCCCHHHHHHHHHHhcc----cCCCc-hHHHHHHHHH
Q 042039 204 IHQVEHALKLFEEMQRD----DVAAD-----TSTYNTFIDGLCKNGYIVEAVELFRTLGI----LKCEL-DIQAYNCLID 269 (376)
Q Consensus 204 ~~~~~~a~~~~~~~~~~----~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 269 (376)
..|+++|.-+..+..+. ++..- ......+..++...|....|.+.-++..+ .|..+ .......++.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 78888877666555432 11111 11223344556666777777666666532 23221 2334455667
Q ss_pred HHHhCCChHHHHHHHhcccc
Q 042039 270 GLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~ 289 (376)
.|...|+.+.|..-|+++..
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 77777777777766665443
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.86 E-value=0.098 Score=45.14 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=83.5
Q ss_pred HHccCcHHHHHHHHHH--HHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHH
Q 042039 166 YCKNKEVEEALSLYRE--MVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIV 243 (376)
Q Consensus 166 ~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (376)
..-.++++++.+.... +... + +......++.-+.+.|-++.|.++..+ +. .-.....+.|+.+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 3445666666555541 1111 1 133456666666677777777665332 21 1233445677777
Q ss_pred HHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 042039 244 EAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDME 323 (376)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (376)
.|.++.+.. .++..|..|+......|+++-|.+.|++... +..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 777665442 2566777788777778888888877776553 3456666677777766666666665
Q ss_pred HcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 324 ENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
..|- ++....++.-.|+.++..+++.+-
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5431 333344455567777766665543
No 244
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.3 Score=43.15 Aligned_cols=251 Identities=14% Similarity=0.106 Sum_probs=125.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-----------hhhHHHHHHHHhcCCC--hHHHHHHHHHHHh
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPD-----------VVTYNSLIHGLCHAND--WNEAKRLFFEMMD 79 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 79 (376)
.|....+.+-+-.|...|.+++|..+-- .|+..+ .-.++..=.+|.+..+ +-+-+.-++++.+
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~ 628 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKK 628 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455566666667788888888765411 111111 1112222233433332 2333444455566
Q ss_pred cCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 042039 80 QGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVR----PNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHD 155 (376)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (376)
.|-.|+... +...++-.|.+.+|.++|.+--..+-. .|... ...+.-+...|.-++-..+.++-.+-. .+
T Consensus 629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRM-FD~aQE~~~~g~~~eKKmL~RKRA~WA--r~ 702 (1081)
T KOG1538|consen 629 RGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRM-FDYAQEFLGSGDPKEKKMLIRKRADWA--RN 702 (1081)
T ss_pred cCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHH-HHHHHHHhhcCChHHHHHHHHHHHHHh--hh
Confidence 666666443 345566777888887777543211100 00000 112233334444433333333221110 11
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHH------HHHHCC---CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc
Q 042039 156 DVSYNILINGYCKNKEVEEALSLYR------EMVSKG---IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADT 226 (376)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 226 (376)
..--......+...|+.++|..+.- .+.+-+ ...+..+...+...+.+...+..|.++|..|-.
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------- 775 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------- 775 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-------
Confidence 1111233455556777777766532 111111 122455556666666677778888888887743
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhc
Q 042039 227 STYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRS 286 (376)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (376)
...+++.....+++++|..+-++..+.. +..|...++.++...++++|.+.|.+
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~----~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFK----DDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCcccc----ccccchHHHHhhhhhhHHHHHHHHHH
Confidence 2456777888999999999988865432 22333444444444444444444443
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.17 Score=40.16 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=90.2
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCCh
Q 042039 198 FLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRL 277 (376)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (376)
.......|+...|...|....... +.+......++.+|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344566778888888888877764 4456677778888888888888888888765432221122222223344444444
Q ss_pred HHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCChhhH
Q 042039 278 EIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAV-APNVIIFVTLIHGFVRINKPSKV 350 (376)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a 350 (376)
.+...+-++... .+.|...-..+...+...|+.+.|.+.+-.++..+. .-|...-..++..+.-.|..+.+
T Consensus 220 ~~~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 443343333333 244677777888888888888888887776665421 12444555666666555543333
No 246
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.81 E-value=0.043 Score=37.94 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=64.6
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhc---------------ccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 225 DTSTYNTFIDGLCKNGYIVEAVELFRTLG---------------ILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
|..++..++.++++.|+.+....+++..= .....|+..++.+++.+|+..|++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34677888889999999999988887751 112347788899999999999999999999988764
Q ss_pred -cCCCCCHHHHHHHHHHHHccC
Q 042039 290 -RVLVADVVTYNIMIHGLCNDG 310 (376)
Q Consensus 290 -~~~~~~~~~~~~l~~~~~~~~ 310 (376)
.+++.+..+|..|+.-....-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 345556778887776655433
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.059 Score=43.29 Aligned_cols=154 Identities=13% Similarity=0.101 Sum_probs=107.2
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCc
Q 042039 61 LCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNA----FTYSTLMDGFCLTGK 136 (376)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 136 (376)
..-.|++.+|-..++++++. .+.|...+...=.++...|+.......+++++.. -.++. .....+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34567788888888888876 3447777777777888889888888888888754 12232 233344455667899
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhccchHHHHHH
Q 042039 137 INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK---GIKPTVVTYNTLFLGLFEIHQVEHALKL 213 (376)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (376)
+++|++.-++..+.+ +.|..+...+...+...+++.++.++..+-... +--.-..-|-...-.+...+.++.|+.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999998887 667777788888888899999998887664332 0001122333344455666889999999
Q ss_pred HHHH
Q 042039 214 FEEM 217 (376)
Q Consensus 214 ~~~~ 217 (376)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 8753
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.79 E-value=0.075 Score=36.28 Aligned_cols=53 Identities=25% Similarity=0.185 Sum_probs=24.9
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 26 LCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
+...|+.+.|++.|.+.+..- |....+|+.-..++.-+|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 334445555555554444332 33444455555555545555555544444444
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.69 E-value=0.006 Score=33.16 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=21.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV 91 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (376)
++..+...|...|++++|.++|+++++..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 4555666666666666666666666665322 3444433
No 250
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.69 E-value=0.31 Score=41.12 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcccCCCch----HHHHHHHHH--HHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHH
Q 042039 242 IVEAVELFRTLGILKCELD----IQAYNCLID--GLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKA 315 (376)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~----~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 315 (376)
+..-..+-+-+.+.|++|- ...-+.+.. .+...|++.++.-.-.-+.+ +.|++.+|..++-+.....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 3444444444455555542 333444443 35668899888765544444 678999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHH
Q 042039 316 HDLFLDMEENAVAPNVIIFVT 336 (376)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ 336 (376)
..++..+ +|+..+++.
T Consensus 515 ~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 515 WEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHhC-----CCchhhHHH
Confidence 9999874 566666654
No 251
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.68 E-value=0.26 Score=39.96 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCcHH---HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 123 TYSTLMDGFCLTGKIN---RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
++..++.++...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655543 3444444443332 333455555566666667777777777777765
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.62 E-value=0.094 Score=45.24 Aligned_cols=154 Identities=17% Similarity=0.131 Sum_probs=72.0
Q ss_pred HHhcCChhHHHHHHH--HhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChH
Q 042039 26 LCKEGFVDKAKALFL--QMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMD 103 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (376)
..-.++++++.++.+ ++.. .+ +......++..+.+.|-.+.|+++.. |+. .-+....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHH
Confidence 344566666555554 1111 11 13345556666666666666665532 111 2234445666666
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 042039 104 EASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMV 183 (376)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (376)
.|.++.++. .+...|..|.......|+++-|+++|.+..+ +..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 665543322 2455666666666666666666666665432 3445555555666655555555555
Q ss_pred HCCCCCCHhHHHHHHHHHHhccchHHHHHHHH
Q 042039 184 SKGIKPTVVTYNTLFLGLFEIHQVEHALKLFE 215 (376)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (376)
..|. ++....++.-.|+.++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4421 2333344444555555555544
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.60 E-value=0.088 Score=35.94 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=56.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhc
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN---AFTYSTLMDGFCLT 134 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 134 (376)
..++...|+.+.|++.|.+.+..-+ .....|+.-..++.-+|+.++|+.-+++.++..-..+ ...|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4455666777777777777766522 2566777777777777777777777777666421112 12233444555666
Q ss_pred CcHHHHHHHHHHHHhcC
Q 042039 135 GKINRAEELFGSMESMG 151 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~~ 151 (376)
|+-+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666666666666555
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.55 E-value=0.26 Score=38.51 Aligned_cols=202 Identities=21% Similarity=0.084 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHH-
Q 042039 122 FTYSTLMDGFCLTGKINRAEELFGSMESM-GCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFL- 199 (376)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 199 (376)
.........+...+.+..+...+...... ..+.....+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444555555555555555554431 112333444444555555555555555555555432221 111111122
Q ss_pred HHHhccchHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCCh
Q 042039 200 GLFEIHQVEHALKLFEEMQRDDV--AADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRL 277 (376)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (376)
.+...++++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555555533210 0112222222223445556666666666655443111244555555666666666
Q ss_pred HHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 278 EIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
+.|...+....... +.....+..+...+...+..+.+...+.+....
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666655431 112333344444444555566666666666553
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.49 E-value=0.35 Score=39.18 Aligned_cols=165 Identities=14% Similarity=0.166 Sum_probs=102.9
Q ss_pred HHhcCChhHHHHHHHHhhhCC--CCCC-----hhhHHHHHHHHhcCC-ChHHHHHHHHHHHhc--------CCCCc----
Q 042039 26 LCKEGFVDKAKALFLQMKGEN--INPD-----VVTYNSLIHGLCHAN-DWNEAKRLFFEMMDQ--------GVQPS---- 85 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~--~~~~-----~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 85 (376)
..+.|+.+.|..++.++.... ..|+ ...+...+......+ +++.|..++++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999987643 1222 122334445555666 888888888776553 12222
Q ss_pred -hHhHHHHHHHHHhCCChH---HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 042039 86 -VVTFNVIMDELCKNGKMD---EASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNI 161 (376)
Q Consensus 86 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (376)
..++..++.++...+..+ +|..+++.+.... +-.+.++..-+..+.+.++.+.+.+.+.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 235667778888877654 5566666665542 2235566667777777899999999999998763 223445555
Q ss_pred HHHHHHc--cCcHHHHHHHHHHHHHCCCCCCHh
Q 042039 162 LINGYCK--NKEVEEALSLYREMVSKGIKPTVV 192 (376)
Q Consensus 162 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~ 192 (376)
.+..+.. ......+...+..++...+.|...
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 5544422 233456666666666554555543
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.48 E-value=0.15 Score=34.95 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 042039 296 VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKV 362 (376)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 362 (376)
...+...+.....+|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.++++++-++|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334445555566666666666666665542 245566666666666666666666666666666654
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.45 E-value=0.31 Score=38.11 Aligned_cols=224 Identities=21% Similarity=0.099 Sum_probs=160.9
Q ss_pred cCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhccchHHHH
Q 042039 134 TGKINRAEELFGSMESMGCK-HDDVSYNILINGYCKNKEVEEALSLYREMVSK-GIKPTVVTYNTLFLGLFEIHQVEHAL 211 (376)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (376)
.+....+...+......... ............+...+++..+...+...... ........+..........+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666666554311 13567778888889999999999999888752 23456677777888888888999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHH-HHHhCCCHHHHHHHHHHhcccCC--CchHHHHHHHHHHHHhCCChHHHHHHHhccc
Q 042039 212 KLFEEMQRDDVAADTSTYNTFID-GLCKNGYIVEAVELFRTLGILKC--ELDIQAYNCLIDGLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (376)
..+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988764222 233333334 78899999999999999855321 1234445555555778899999999999988
Q ss_pred ccCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 289 RRVLVA-DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 289 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
.. .+. ....+..+...+...++++.|...+......... ....+..+...+...+..+++...+.+..+.
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76 333 4677888899999999999999999999875322 2444555555555777889999888887754
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.43 E-value=0.26 Score=37.14 Aligned_cols=181 Identities=14% Similarity=0.034 Sum_probs=102.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHH
Q 042039 134 TGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKL 213 (376)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (376)
.|-+.-|.--|.+..... |.-+.+||.++-.+...|+++.|.+.|+...+.+.. ...+...-.-++.-.|+++.|.+-
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHH
Confidence 344455555555555554 555678888888888999999999999998886322 223333333444556888888887
Q ss_pred HHHHHhcCCCCCcchHHHHHHHH-HhCCCHHHHHHH-HHHhcccCCCchHHHHHH-HHHHHHhCCChHHHHHHHhccccc
Q 042039 214 FEEMQRDDVAADTSTYNTFIDGL-CKNGYIVEAVEL-FRTLGILKCELDIQAYNC-LIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
+...-+.+ +.|+ |..+--.. ...-++.+|..- .++.... +..-|.. ++..|...=..+. +++++...
T Consensus 156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKAD 225 (297)
T ss_pred HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhh
Confidence 77776654 2222 22222211 123355666543 3444322 2222322 2222322112222 22222211
Q ss_pred CCCC-------CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 042039 291 VLVA-------DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAV 327 (376)
Q Consensus 291 ~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 327 (376)
... -..+|..++..+...|+.++|..+|+-.+..++
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 111 135788888999999999999999998887643
No 259
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.39 E-value=0.7 Score=41.64 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=91.2
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHh-----cCCChHHHHHHHHHHHh-------cCCCCchHhHHHHHHHHHhC
Q 042039 32 VDKAKALFLQMKGENINPDVVTYNSLIHGLC-----HANDWNEAKRLFFEMMD-------QGVQPSVVTFNVIMDELCKN 99 (376)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 99 (376)
...|.+.++.....| +......++.++. ...+++.|+.+|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356777777777665 3444444443333 33577788888877766 33 233445556666553
Q ss_pred C-----ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc---
Q 042039 100 G-----KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLT---GKINRAEELFGSMESMGCKHDDVSYNILINGYCK--- 168 (376)
Q Consensus 100 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 168 (376)
. +.+.|..++...-+.| .|+. ...+..++... .+...|.++|..+...| ...++..+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCC
Confidence 2 4566777777776665 2232 22333333332 24567777777777665 23333333333332
Q ss_pred -cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 169 -NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 169 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
..+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+...
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 335677777777777665 2222222222222222 5555555554444443
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.35 E-value=0.57 Score=40.21 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=78.4
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 042039 162 LINGYCKNKEVEEALSLYREMVSKGIKPT-VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNG 240 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (376)
++.-.-+..+++.-++.-+++++. .|+ ...|..|.+ -......++.+++++..+.+-. .+..- ......|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhccc
Confidence 344444556666666666666663 343 233332221 2344567777777777665310 00000 0000111
Q ss_pred CHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCC-CCHHHHHHHHHHHHccCChhHHHHHH
Q 042039 241 YIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLV-ADVVTYNIMIHGLCNDGQMDKAHDLF 319 (376)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (376)
. .++........+-..+-..++.++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++
T Consensus 245 ~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 H------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred c------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 1 1111112222223334455666777788888888888887654211 23446677888888888888888888
Q ss_pred HHHHH
Q 042039 320 LDMEE 324 (376)
Q Consensus 320 ~~~~~ 324 (376)
.+-.+
T Consensus 319 ~kYdD 323 (539)
T PF04184_consen 319 AKYDD 323 (539)
T ss_pred HHhcc
Confidence 77654
No 261
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.17 E-value=0.81 Score=40.15 Aligned_cols=294 Identities=12% Similarity=0.043 Sum_probs=174.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHh-cCCChHHHHHHHHHHHhc-CCC-CchHhHHHHHHHH
Q 042039 20 NTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLC-HANDWNEAKRLFFEMMDQ-GVQ-PSVVTFNVIMDEL 96 (376)
Q Consensus 20 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~ 96 (376)
-.....=.+.|..+.+.++|++..+ +++.+...|......+. ..|+.+...+.|+.+... |.. .+...|...+..-
T Consensus 83 ~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e 161 (577)
T KOG1258|consen 83 KKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE 161 (577)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence 3344444577899999999999985 45777788877765554 457888888999888775 322 2455678888877
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc------CcHHHHHHHHHHHHh--------------------c
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLT------GKINRAEELFGSMES--------------------M 150 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~--------------------~ 150 (376)
..++++.....++++.++.-.. ....+.....-+... ...+++.++-..... .
T Consensus 162 n~qks~k~v~~iyeRileiP~~-~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~ 240 (577)
T KOG1258|consen 162 NGQKSWKRVANIYERILEIPLH-QLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDS 240 (577)
T ss_pred hccccHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhc
Confidence 8888999999999999874111 111111111111111 122222222222111 0
Q ss_pred CCCCCh--hhHHHHHH-------HHHccCcHHHHHHHHHHHHHC---CCC----CCHhHHHHHHHHHHhccchHHHHHHH
Q 042039 151 GCKHDD--VSYNILIN-------GYCKNKEVEEALSLYREMVSK---GIK----PTVVTYNTLFLGLFEIHQVEHALKLF 214 (376)
Q Consensus 151 ~~~~~~--~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~ 214 (376)
+.+.+. .....+.. ++.......+....++.-++. .+. ++..+|...+.--...|+.+.+.-++
T Consensus 241 ~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ 320 (577)
T KOG1258|consen 241 TDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILF 320 (577)
T ss_pred cCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHH
Confidence 100000 01111111 111222223333333333332 122 23567777788888899999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCC
Q 042039 215 EEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVA 294 (376)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (376)
++..-. ...-...|-..+.-....|+.+-|..++....+...+..+.+...-.......|++..|..+++.+... .+.
T Consensus 321 ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~pg 398 (577)
T KOG1258|consen 321 ERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-YPG 398 (577)
T ss_pred HHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-CCc
Confidence 987643 123345566666666677999999998888776665544444444444556678999999999999887 333
Q ss_pred CHHHHHHHHHHHHccCChhHHHH
Q 042039 295 DVVTYNIMIHGLCNDGQMDKAHD 317 (376)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~ 317 (376)
-...-..-+....+.|+.+.+..
T Consensus 399 ~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 399 LVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred hhhhHHHHHhHHHHhcchhhhhH
Confidence 33444444556667888888773
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.06 E-value=0.094 Score=41.65 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHh-----cCCCCChhhHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQ-----RDVRPNAFTYS 125 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 125 (376)
..++..++..+...|+++.+...+++++...+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456777788888888888888888888776433 677788888888888888888888877765 46777766665
Q ss_pred HHHHH
Q 042039 126 TLMDG 130 (376)
Q Consensus 126 ~l~~~ 130 (376)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.03 E-value=0.86 Score=39.21 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 122 FTYSTLMDGFCLTGKINRAEELFGSMESMGCK-HDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
.+-..+..++.+.|+.++|.+.++++.+.... .......+|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33445666666777777777777777654311 2334666777777777777777777777644
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.97 E-value=0.11 Score=41.20 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCcHHHHH
Q 042039 261 IQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE-----NAVAPNVIIFV 335 (376)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 335 (376)
..++..++..+...|+++.+...++++... -+-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345556666666666666666666666655 344666666666777777777776666666543 35666555555
Q ss_pred HHHHH
Q 042039 336 TLIHG 340 (376)
Q Consensus 336 ~l~~~ 340 (376)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=0.42 Score=34.69 Aligned_cols=124 Identities=13% Similarity=0.090 Sum_probs=62.7
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCc-hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChh-h--HHHHHHHHHhcCcH
Q 042039 62 CHANDWNEAKRLFFEMMDQGVQPS-VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAF-T--YSTLMDGFCLTGKI 137 (376)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~ 137 (376)
.+.+..++|+.-|..+.+.|...- +.............|+...|...|+++-.....|-.. - -..-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344556666666666665544311 1112223334455566666666666665443222211 0 01112234455666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 138 NRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
+....-.+.+...+-+.....-..|.-+-.+.|++.+|.+.|.++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666665554443444445555666666666666666666666553
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.81 E-value=0.21 Score=37.09 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC--chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHH--
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQP--SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYST-- 126 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 126 (376)
...+..++..|.+.|+.+.|.+.|.++......+ -...+..+++.....+++..+...+.+....-..+.......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3567788888888888888888888887764333 244567777888888888888888777665321211111111
Q ss_pred ---HHHHHHhcCcHHHHHHHHHHHH
Q 042039 127 ---LMDGFCLTGKINRAEELFGSME 148 (376)
Q Consensus 127 ---l~~~~~~~~~~~~a~~~~~~~~ 148 (376)
-+-.+...+++..|-+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 1222345678888887776654
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.69 E-value=2.1 Score=41.07 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=44.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCH--HHHHHHHHHHHcc
Q 042039 232 FIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADV--VTYNIMIHGLCND 309 (376)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 309 (376)
.+..+.....+++|.-.|+..... ...+.+|..+|+|.+|+.+..++... .+. .+-..|+.-+...
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 334444555566666555554321 23345566667777776666654321 111 1224566666777
Q ss_pred CChhHHHHHHHHHHH
Q 042039 310 GQMDKAHDLFLDMEE 324 (376)
Q Consensus 310 ~~~~~a~~~~~~~~~ 324 (376)
+++-+|-++..+...
T Consensus 1013 ~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS 1027 (1265)
T ss_pred ccchhHHHHHHHHhc
Confidence 777777776666544
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.69 E-value=0.51 Score=33.95 Aligned_cols=54 Identities=20% Similarity=0.076 Sum_probs=31.2
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 26 LCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
-.+.++.+++..+++-+.-.. |.....-..-...+...|+|.+|..+|+++...
T Consensus 20 al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345566777777776665442 222333333445566677777777777776554
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.69 E-value=0.012 Score=29.83 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=16.8
Q ss_pred HhhhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 042039 41 QMKGENINPDVVTYNSLIHGLCHANDWNEAK 71 (376)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 71 (376)
+.++.+ |.+..+|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334333 455666666666666666666554
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=3.2 Score=43.10 Aligned_cols=321 Identities=10% Similarity=0.063 Sum_probs=163.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHh
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENIN--PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCK 98 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (376)
.+..+-.+.+.+.+|...+++-.....+ .....+..+...|...++++....+...... .|+ . ...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H-HHHHHHHHh
Confidence 4555667888899999999984221111 1233344445589999999988777654111 222 2 233445567
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHccCcHHHHHH
Q 042039 99 NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNI-LINGYCKNKEVEEALS 177 (376)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 177 (376)
.|++..|...|+.+.+.+ ++....+..++......|.++......+-..... ++...-++. -..+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 3346677777777777888888877666655442 222233332 3344466777776666
Q ss_pred HHHHHHHCCCCCCHhHHHH--HHHHHHhccchH--HHHHHHHHHHhc--------CCC-CCcchHHHHHHHHHhCCCHHH
Q 042039 178 LYREMVSKGIKPTVVTYNT--LFLGLFEIHQVE--HALKLFEEMQRD--------DVA-ADTSTYNTFIDGLCKNGYIVE 244 (376)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~--~a~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~~~~~~ 244 (376)
... .. +..+|.. ++....+...-+ .-.+..+.+.+. ... .-...|..+++...-.. .+.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence 554 11 1112221 222222221111 111122222111 000 11123333333332211 111
Q ss_pred HHHHHHHhc-ccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcc-c----ccC-CCCCHHHHHHHHHHHHccCChhHHHH
Q 042039 245 AVELFRTLG-ILKCELDIQAYNCLIDGLCKSGRLEIALELFRSL-P----RRV-LVADVVTYNIMIHGLCNDGQMDKAHD 317 (376)
Q Consensus 245 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~----~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 317 (376)
-.+.+.... ......+..-|..-+..-....+..+-+-.+++. . +.+ ...-..+|...++.....|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111111111 0000111112222211111111111111111111 1 101 12235678888888888999999888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 318 LFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
.+-++.+.+ -+..+...++-....|+...|+.++++-.+.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 877777654 3344555667778889999999988888754
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.66 E-value=0.67 Score=35.11 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 262 QAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
.+|..++..+...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4455555555555555555555555443
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.65 E-value=0.26 Score=36.63 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 042039 87 VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN--AFTYSTLMDGFCLTGKINRAEELFGSMES 149 (376)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 149 (376)
..+..++..|.+.|+.++|.+.|.++.+....+. ...+..+++.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777766543332 34556667777777777777777666644
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.63 E-value=0.014 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=16.9
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHccCcHHHHH
Q 042039 145 GSMESMGCKHDDVSYNILINGYCKNKEVEEAL 176 (376)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (376)
++.++.. |.+..+|+.++.+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344443 455556666666666666665554
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.63 E-value=0.51 Score=33.54 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcC
Q 042039 20 NTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHA 64 (376)
Q Consensus 20 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 64 (376)
..++..+.+.+.......+++.+...+ +.+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555556666666666655554 34555555566655543
No 275
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.50 E-value=1.4 Score=37.75 Aligned_cols=130 Identities=9% Similarity=0.059 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHh
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCK 98 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (376)
-..-|.-....|+...|-+-+....++. +.++.............|+++.+.+.+....+. +.....+...+++....
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc
Confidence 3344445556788877765555444432 334444444455566789999999988776543 33456677888899999
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 042039 99 NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMG 151 (376)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 151 (376)
.|++++|..+-.-|+...++ ++..........-..|-++++.-.|+++...+
T Consensus 370 l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999999998877654 44444444444556678899999999987766
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.47 E-value=0.59 Score=33.22 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=16.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCK 168 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (376)
+..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333344444444444444433 2333344444444443
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.45 E-value=0.66 Score=33.71 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=56.6
Q ss_pred hccchHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHH---HHHHHHHHHHhCCChH
Q 042039 203 EIHQVEHALKLFEEMQRDDVAADTS-TYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQ---AYNCLIDGLCKSGRLE 278 (376)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 278 (376)
+.+..++|+.-|..+.+.|...-+. ............|+...|...|.++......|-.. .-..-...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3445555555555555544221111 11222333445556666666666554332222111 1111122344556666
Q ss_pred HHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 279 IALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
....-.+.+...+.+.-...-..|..+-.+.|++..|...|..+.+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6655555554433333333444555555566666666666666654
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.42 E-value=0.035 Score=28.50 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQ 41 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~ 41 (376)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444455555555555555544
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.38 E-value=0.043 Score=28.16 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=15.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHH
Q 042039 159 YNILINGYCKNKEVEEALSLYREMV 183 (376)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (376)
+..|+.+|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 280
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.26 E-value=1.4 Score=36.36 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=66.3
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHh
Q 042039 194 YNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCK 273 (376)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (376)
...-+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... . -+|.-|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 3444455556677666666655442 45666777777777777777776665432 1 133456667777777
Q ss_pred CCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 042039 274 SGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLD 321 (376)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (376)
.|+..+|..+..++. +..-+..|.+.|++.+|.+..-+
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777776621 13455666777777777665443
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.26 E-value=0.61 Score=32.14 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 042039 262 QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAV 327 (376)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 327 (376)
......+..+...|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++-+++.++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455566666666666666665532 345666666677777777777777777776666654
No 282
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.16 E-value=0.25 Score=38.89 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhC-----CChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC----------------hhHHHHH
Q 042039 260 DIQAYNCLIDGLCKS-----GRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ----------------MDKAHDL 318 (376)
Q Consensus 260 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------~~~a~~~ 318 (376)
|..+|...+..+... +..+-....++.|.+.|+.-|..+|..|+..+-+..- -+=++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 556666666666432 4455556666777777777788888877777654321 1124555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHH
Q 042039 319 FLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHK 356 (376)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (376)
+++|...|+-||..+-..|+.++ |++.-...-+.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~F---Gr~~~p~~K~~R 180 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAF---GRWNFPTKKVKR 180 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHh---ccccccHHHHHH
Confidence 55555555555555555555544 555444433333
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.07 E-value=0.86 Score=32.82 Aligned_cols=53 Identities=25% Similarity=0.090 Sum_probs=27.4
Q ss_pred HhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 237 CKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
.+.++.+++..++..+....+. .+..-..-+..+...|++.+|..+|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666665444322 2222333344455566666666666665543
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.04 E-value=1 Score=33.51 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=59.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcccCCC--chHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHcc
Q 042039 232 FIDGLCKNGYIVEAVELFRTLGILKCE--LDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCND 309 (376)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (376)
+...+...+++++|...++........ .....-..+.+.....|.+++|+..++.....+. .......-+..+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 345667788888888888776543211 1122334566677778888888888877665432 233344556777778
Q ss_pred CChhHHHHHHHHHHHcC
Q 042039 310 GQMDKAHDLFLDMEENA 326 (376)
Q Consensus 310 ~~~~~a~~~~~~~~~~~ 326 (376)
|+-++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888777764
No 285
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.03 E-value=0.8 Score=32.26 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGC--KHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
+....+.|++++|.+.|+.+...-. +-...+-..++.+|.+.+++++|...+++.++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3333444445555554444443310 11222333444444444555555554444444
No 286
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=2.7 Score=38.25 Aligned_cols=303 Identities=11% Similarity=0.111 Sum_probs=164.0
Q ss_pred hCCCCCChhhHHH-----HHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC--hHHHHHHHHHHHhcC
Q 042039 44 GENINPDVVTYNS-----LIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK--MDEASRLLDLMVQRD 116 (376)
Q Consensus 44 ~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 116 (376)
..|++.+..-|.. ++.-+...+.+..|+++-..+...-.. ....|.....-+.+..+ -+++.+.+.+=+...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666665554 455666778899999988776432212 25666666666666532 223333333222221
Q ss_pred CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC------
Q 042039 117 VRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCK----HDDVSYNILINGYCKNKEVEEALSLYREMVSKG------ 186 (376)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 186 (376)
.. ....|..+++-....|+.+-|..+++.-...+.. .+..-+...+.-+...|+.+-...++-.+..+-
T Consensus 504 ~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 LT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred CC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 22 3456777888888899999998887653222100 011122333444455666666655555544320
Q ss_pred -----CCCCHhHHHHHHH--------HHHhccchHHHHHHHH--HHHhc-CCCCCcchHHHHHHHHHhCCCHH---HH--
Q 042039 187 -----IKPTVVTYNTLFL--------GLFEIHQVEHALKLFE--EMQRD-DVAADTSTYNTFIDGLCKNGYIV---EA-- 245 (376)
Q Consensus 187 -----~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~---~a-- 245 (376)
.+.....|..+++ .+.+.++-..+...+. ..... .+.+-..........+.+..... +|
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1112222222222 1111222222222221 10000 01122223344444454443311 11
Q ss_pred -----HHHHHHhc-ccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 042039 246 -----VELFRTLG-ILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLF 319 (376)
Q Consensus 246 -----~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (376)
..+.+.+. +.+.....-+.+.-+.-+...|+..+|.++-+++. -||...|..-+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 11111111 11111222345556667778899999999888765 368888988999999999998877765
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 320 LDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
+... .+.-|...+.+|.+.|+.++|.+++.+..
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 5432 35567888999999999999999887763
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.82 E-value=3 Score=37.75 Aligned_cols=272 Identities=14% Similarity=0.064 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHHhcCCCCchHhHHHHHHH-----HHhCCChHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhc
Q 042039 67 WNEAKRLFFEMMDQGVQPSVVTFNVIMDE-----LCKNGKMDEASRLLDLMVQ-------RDVRPNAFTYSTLMDGFCLT 134 (376)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 134 (376)
...|.++++...+.| +......+..+ +....+.+.|..+++.+.+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888887765 33333333333 3355789999999999877 44 344666778888775
Q ss_pred C-----cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc---CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----
Q 042039 135 G-----KINRAEELFGSMESMGCKHDDVSYNILINGYCKN---KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLF---- 202 (376)
Q Consensus 135 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 202 (376)
. +.+.|..++....+.| .|+.. ..++.++... .+...|.++|..+...|.. ..+..+..++.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 6788999999998887 34433 3344444433 4678999999999988643 33334443333
Q ss_pred hccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHH-HH---Hh----C
Q 042039 203 EIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLID-GL---CK----S 274 (376)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~ 274 (376)
...+...|..++.+..+.+ .|........+..+.. ++++.+.-.+..+...+.+ ...+-...+. .. .. .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence 2347888999999998887 3333333333334444 7777777766666655533 2221111111 11 11 1
Q ss_pred CChHHHHHHHhcccccCCCCCHHHHHHHHHHHHcc----CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCC
Q 042039 275 GRLEIALELFRSLPRRVLVADVVTYNIMIHGLCND----GQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR----INK 346 (376)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 346 (376)
.+.+.+...+.+....| +......+...|... .+++.|...+......+ ....|+ +...+.. ..
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~- 524 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV- 524 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-
Confidence 24556666666655443 455555566555443 35777888887777654 222222 3322211 22
Q ss_pred hhhHHHHHHHHHhCC
Q 042039 347 PSKVIELLHKMKEKK 361 (376)
Q Consensus 347 ~~~a~~~~~~~~~~~ 361 (376)
...|.+++++..+.+
T Consensus 525 ~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 525 LHLAKRYYDQASEED 539 (552)
T ss_pred hHHHHHHHHHHHhcC
Confidence 577777777776544
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=1.5 Score=40.21 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc--hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS--VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
...-+..+.+..-++-|+.+-+. .+..++ .........-+...|++++|...|-+.+.. +.|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 34455666666667777666433 222222 123334445556778888888877776653 2322 244455
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 132 CLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
....+..+-..+++.+.+.|. .+...-..|+.+|.+.++.++-.++.+..
T Consensus 408 Ldaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred cCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 566667777777777777773 45566667788888888777766655543
No 289
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.67 E-value=1.2 Score=33.42 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=51.2
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 042039 164 NGYCKNKEVEEALSLYREMVSKGIKPT-----VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK 238 (376)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (376)
.-+...|++++|..-|..++.. +++. ...|..-..++.+.+.++.|+.-..+.++.+ +.....+..-+.+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3345566777777777766664 2222 2233344455556666666666666666554 2233344444556666
Q ss_pred CCCHHHHHHHHHHhcccC
Q 042039 239 NGYIVEAVELFRTLGILK 256 (376)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~ 256 (376)
...+++|+.-|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 666677766666666553
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.53 E-value=0.1 Score=26.14 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=13.9
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
+|..++.++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555555555555555554
No 291
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.51 E-value=0.091 Score=28.33 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=12.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHH
Q 042039 302 MIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 292
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.42 E-value=0.63 Score=34.88 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=59.1
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCcH
Q 042039 61 LCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR---DVRPNAFTYSTLMDGFCLTGKI 137 (376)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 137 (376)
..+.|+ ++|.+.|-++...+.--++.....++..|. ..+.+++..++...++. +..+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 678888888877765546666665555554 67889999999888764 3366789999999999999999
Q ss_pred HHHH
Q 042039 138 NRAE 141 (376)
Q Consensus 138 ~~a~ 141 (376)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 293
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.36 E-value=0.56 Score=37.04 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCCchHhHHHHHHHHHhC----------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 68 NEAKRLFFEMMDQGVQPSVVTFNVIMDELCKN----------------GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
+-....++.|.+.|+..|..+|+.|+..+-+. .+-+-++.++++|...|+.||..+-..++.++
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 33333444455555555555555555443221 23456788899999899999988888888888
Q ss_pred HhcCc
Q 042039 132 CLTGK 136 (376)
Q Consensus 132 ~~~~~ 136 (376)
.+.+.
T Consensus 169 Gr~~~ 173 (406)
T KOG3941|consen 169 GRWNF 173 (406)
T ss_pred ccccc
Confidence 87764
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.35 E-value=0.89 Score=33.98 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=66.2
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCc----hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 60 GLCHANDWNEAKRLFFEMMDQGVQPS----VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
-+...|++++|..-|..++..-+... ...|..-..+..+.+.++.|+.-..+.++.+ +........-+.+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 35678889999988888887622211 2345555667888889999988888888865 223445555577888888
Q ss_pred cHHHHHHHHHHHHhcC
Q 042039 136 KINRAEELFGSMESMG 151 (376)
Q Consensus 136 ~~~~a~~~~~~~~~~~ 151 (376)
.++.|+.-|.++....
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 8999999999888774
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.32 E-value=0.14 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
|..++.++...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.30 E-value=0.12 Score=25.77 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=13.3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
.+..++.++...|++++|++.|+++.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 297
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=4.4 Score=37.50 Aligned_cols=252 Identities=15% Similarity=0.123 Sum_probs=148.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQRDVRPN--AFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGY 166 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (376)
...-+..+.+...++-|..+-+. .+..++ .......+..+.+.|++++|...|-+....- .|+ .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHh
Confidence 34456666777777777766543 222322 2344455666678899999998887765432 221 246666
Q ss_pred HccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHH
Q 042039 167 CKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAV 246 (376)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (376)
.......+-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777788888888888888765 56666788999999999998877766544 2211 223566677777888888888
Q ss_pred HHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc-
Q 042039 247 ELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN- 325 (376)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 325 (376)
.+-..... +......+ +...+++++|+++++.+.-.. -..+....+..+.. ..+++-..++-+....
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e---~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~ 551 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISE---LLRTLNKYGKILLE-HDPEETMKILIELITEL 551 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHH---HHHHHHHHHHHHHh-hChHHHHHHHHHHHhhc
Confidence 77666542 23333333 456789999999998764221 12233333333333 2344444444444332
Q ss_pred CCCCcHHHH----HHHHHHHhhcCChhhHHHHHHHHHhCCCCCchH
Q 042039 326 AVAPNVIIF----VTLIHGFVRINKPSKVIELLHKMKEKKVMPDAS 367 (376)
Q Consensus 326 ~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 367 (376)
+..+..... ..+-....-.++++.....++.|.+. .|+..
T Consensus 552 ~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~--s~~s~ 595 (933)
T KOG2114|consen 552 NSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI--SPDSE 595 (933)
T ss_pred CCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc--CCCch
Confidence 212111111 11122234466777777777776654 44443
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.22 E-value=0.21 Score=40.43 Aligned_cols=90 Identities=11% Similarity=0.022 Sum_probs=61.7
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChH
Q 042039 24 DGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMD 103 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (376)
..|+++|++++|++.|....... +.|+.++..-..+|.+..++..|..-.+..+..+ ..-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 34778888888888888777653 4477888888888888888887777777666542 112334555555555667777
Q ss_pred HHHHHHHHHHhc
Q 042039 104 EASRLLDLMVQR 115 (376)
Q Consensus 104 ~a~~~~~~~~~~ 115 (376)
+|.+-++..+..
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 777777777664
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=1.7 Score=32.42 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=23.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
.+.....|.+++|...++.....+ ........-++++...|+-++|..-|.+.+..
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444444444444444433321 11122223334444444444444444444443
No 300
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.20 E-value=3.4 Score=35.72 Aligned_cols=109 Identities=15% Similarity=-0.015 Sum_probs=63.9
Q ss_pred HHHHhCCCHHHHHHHHHHhccc---CCCchH-----HHHHHHHHHHHhCCChHHHHHHHhcccc-------cCCCCC---
Q 042039 234 DGLCKNGYIVEAVELFRTLGIL---KCELDI-----QAYNCLIDGLCKSGRLEIALELFRSLPR-------RVLVAD--- 295 (376)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~--- 295 (376)
..+.-.|++.+|.+++-...-. |...++ ..|+.++-.+.+.|.+.-+..+|.++.+ .|..|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455667777777776554211 111111 1234555555556666666655555442 232221
Q ss_pred -------HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 042039 296 -------VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR 343 (376)
Q Consensus 296 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (376)
....+..+-.|...|++-.|.+.|.+.... ...++..|..+..+|..
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233445666778888888888888887764 34578888888888765
No 301
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.16 E-value=4.6 Score=37.17 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHccCChhHHHHHHHHHHHcCC-CCc-------HHHHHHHHHHHhhcCChhhHHHHHH--------HHHhCCCCCchHHH
Q 042039 306 LCNDGQMDKAHDLFLDMEENAV-APN-------VIIFVTLIHGFVRINKPSKVIELLH--------KMKEKKVMPDASIV 369 (376)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~p~~~~~ 369 (376)
.+-.+++..|...++.+.+..- .|+ +..+....-.+...|+.+.|...|. .....+...+..++
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 3457889999999998875421 111 2223333334556799999999997 45455555555554
Q ss_pred HH
Q 042039 370 SM 371 (376)
Q Consensus 370 ~~ 371 (376)
..
T Consensus 451 a~ 452 (608)
T PF10345_consen 451 AA 452 (608)
T ss_pred HH
Confidence 43
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.10 E-value=3.1 Score=35.05 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=49.8
Q ss_pred CCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 042039 189 PTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA---DTSTYNTFIDGLCKNGYIVEAVELFRTLGI 254 (376)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (376)
....++..++..+.+.|.++.|...+..+...+... .+.....-++..-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888888899999999999888887653221 455566667777788888999988888765
No 303
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=94.06 E-value=4.6 Score=36.78 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred hcCChhhHHHHHHHHHhCCCCCchHHHHHHHh
Q 042039 343 RINKPSKVIELLHKMKEKKVMPDASIVSMVVD 374 (376)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 374 (376)
+.|++.+|.+.+-.+.+.++.|...-...+.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 35777777777777777777776655554444
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.84 E-value=3.5 Score=34.74 Aligned_cols=193 Identities=14% Similarity=0.122 Sum_probs=102.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC---C-CchHhHHHHHHHHH
Q 042039 22 IIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV---Q-PSVVTFNVIMDELC 97 (376)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~l~~~~~ 97 (376)
..++.-+.|+|+...+........ .++...+..+... ..++++++...++++...-. . .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356777889999865555554432 2344444444433 78899999888888765310 0 01122222222222
Q ss_pred hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-----cCcHHHHHHHH---HHHHh--cCCCCChhhHHHHHHHHH
Q 042039 98 KNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL-----TGKINRAEELF---GSMES--MGCKHDDVSYNILINGYC 167 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~---~~~~~--~~~~~~~~~~~~l~~~~~ 167 (376)
....+.+..++.+-..... .+......++..... .++++.-..++ ..+.. ........++..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 2222233222222221110 001111111111110 12222111111 11111 112345567888999999
Q ss_pred ccCcHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 168 KNKEVEEALSLYREMVSKGIKP---TVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
+.|.++.|...+..+...+... .+.....-++.+-..|+..+|+..++.....
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988753221 3455566677788889999999999888873
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.75 E-value=1.7 Score=30.80 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=32.4
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 27 CKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
...++.+++..+++.+.-.. |.....-..-...+...|+|.+|..+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34677777777777665442 222333333445566777777777777777665
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.73 E-value=0.21 Score=24.90 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
+..+..++...|++++|++.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.66 E-value=1.3 Score=28.99 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 316 HDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.+-+..+...++.|++.+....+++|.+.+++.-|.++|+-...
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555554443
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.62 E-value=2.1 Score=31.33 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 042039 73 LFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGC 152 (376)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 152 (376)
+++.+.+.+++|+...+..++..+.+.|++.. +.++++.++-+|.......+-.+. +.+..+.++--+|...
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 34444455556666666666666666665443 333333334444333222221111 1222222222222211
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 153 KHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
-...+..+++.+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012344555566666666666666554
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.38 E-value=3.7 Score=33.55 Aligned_cols=137 Identities=12% Similarity=0.186 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--c----cchHHHHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCC--
Q 042039 173 EEALSLYREMVSKGIKPTVVTYNTLFLGLFE--I----HQVEHALKLFEEMQRDDVAA---DTSTYNTFIDGLCKNGY-- 241 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~-- 241 (376)
++.+.+++.+.+.|..-+..+|......... . ....++..+++.|.+...-. +...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3444566666666666555554443332222 1 12446677777776664221 12222222211 2222
Q ss_pred --HHHHHHHHHHhcccCCCch--HHHHHHHHHHHHhCCC--hHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC
Q 042039 242 --IVEAVELFRTLGILKCELD--IQAYNCLIDGLCKSGR--LEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ 311 (376)
Q Consensus 242 --~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (376)
.+.++.+|+.+...+...+ ......++........ ..++..+++.+.+.+++.....|..++-...-.+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 2445566666666554432 2223333322222211 34667777777777777766666555544433333
No 310
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.18 E-value=0.99 Score=34.27 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC--CCchHhHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV--QPSVVTFNVIMDE 95 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 95 (376)
+.+..++.+.+.++.++++...+.-.+.. |.+...-..++..++-.|+|++|..-++-.-.... .+-...|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778888888999988888777665 66777778888888889999998887777655422 2234455555543
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.10 E-value=2 Score=32.35 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=43.8
Q ss_pred HHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhhcCChhhHH
Q 042039 278 EIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN---AVAPNVIIFVTLIHGFVRINKPSKVI 351 (376)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 351 (376)
+.|.+.|-.+...+.-.++.....++..|. ..+.++++.++-++.+. +-.+|+..+..|+..|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 555555555555544445555555554444 55666777776666543 22456677777777777777776653
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.00 E-value=1 Score=36.70 Aligned_cols=90 Identities=14% Similarity=0.028 Sum_probs=57.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
..-|.++|.+++|+..|...+... +-|++++..-+.+|.+...+..|+.-...+...+ ..-..+|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 345677788888888887777652 2377777777788888888877777666666543 22233444444444455666
Q ss_pred HHHHHHHHHHHH
Q 042039 173 EEALSLYREMVS 184 (376)
Q Consensus 173 ~~a~~~~~~~~~ 184 (376)
.+|-+-++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 666666666655
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.86 E-value=2.6 Score=34.08 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=73.6
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC---CCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChh
Q 042039 46 NINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQG---VQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAF 122 (376)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 122 (376)
|.+.++.+...++..-....+++.+...+-+++... ..|+. +-...++.+. .-++++++.++..-++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 445555556666666666788999998888876541 11121 1122333333 336778999998888999999999
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 042039 123 TYSTLMDGFCLTGKINRAEELFGSMESMG 151 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 151 (376)
++..++..+.+.+++.+|.++.-.+....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998887776543
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.85 E-value=1.2 Score=32.66 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=16.6
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 042039 32 VDKAKALFLQMKGENINPDVVTYNSLIHGLCH 63 (376)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 63 (376)
++.|.+.++.....+ |.|...++.-..++..
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLE 37 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLE 37 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHH
Confidence 456666666655444 6666666555544443
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.80 E-value=4.6 Score=33.04 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--c----CcHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHccCc-
Q 042039 102 MDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL--T----GKINRAEELFGSMESMGC---KHDDVSYNILINGYCKNKE- 171 (376)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 171 (376)
+++...+++.+.+.|+.-+..++......... . .....|..+|+.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777776666555443333322 1 235567777777776541 1222233333222 2333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHhccc--hHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 042039 172 ---VEEALSLYREMVSKGIKPTVV--TYNTLFLGLFEIHQ--VEHALKLFEEMQRDDVAADTSTYNTFIDGL 236 (376)
Q Consensus 172 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (376)
.+.+..+|+.+.+.|...+.. ....++.......+ ..++.++++.+.+.++++....|..++-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 245566666666666554322 22222222221111 346677777777777776666666555443
No 316
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.77 E-value=8 Score=35.72 Aligned_cols=250 Identities=9% Similarity=-0.026 Sum_probs=114.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE 171 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (376)
.+..+.+.+++.....++. . .+.+...-...+.+....|+.++|......+-..| ...+.....+...+.+.|.
T Consensus 105 ~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 105 FVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 3344555666666555221 1 13344444566677777888777777777665555 3445566666666664443
Q ss_pred HHH--HHHHHHHHHHCCCCCCHhHHHHHHHHH-----------Hh-ccchHHHHHHHHHHHhcCCCCCcc--hHHHHHHH
Q 042039 172 VEE--ALSLYREMVSKGIKPTVVTYNTLFLGL-----------FE-IHQVEHALKLFEEMQRDDVAADTS--TYNTFIDG 235 (376)
Q Consensus 172 ~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~-~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 235 (376)
... ..+-++.+...| +...-..+...+ .. ..+...+...+.. ++++.. .+..+...
T Consensus 179 lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~ 250 (644)
T PRK11619 179 QDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFA 250 (644)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHH
Confidence 322 222222222221 111111111111 00 0111111111110 111211 11111111
Q ss_pred HHhCCCHHHHHHHHHHhcccC-CCch--HHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCCh
Q 042039 236 LCKNGYIVEAVELFRTLGILK-CELD--IQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQM 312 (376)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (376)
-....+.+.|..++....... ..+. ..+...++......+..++|...+...... ..+......-+..-...+++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCH
Confidence 223445677777777653322 1111 122333333333332255666666554432 12444444555555577777
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 313 DKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
+.+...+..|.... .-...-...+.+++...|+.++|...|+++.
T Consensus 329 ~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 329 RGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777664321 1233344445666666777777777777763
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.66 E-value=0.32 Score=25.60 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=13.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHH
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMM 78 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 78 (376)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.44 E-value=2.6 Score=31.10 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 172 VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
+++|...|+++.+ ..|+...|..-+.... +|-.+..++.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 4455555555555 3566666666655542 345555555544
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.40 E-value=0.39 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDME 323 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (376)
+++.++..|...|++++|..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.37 E-value=11 Score=36.54 Aligned_cols=56 Identities=18% Similarity=0.057 Sum_probs=28.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccc
Q 042039 232 FIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (376)
.+.+|..+|++.+|..+..++...... -..+-..|+.-+...+++-+|-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 345556666666666666554321100 11112445555666666666666655544
No 321
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.26 E-value=7.2 Score=33.93 Aligned_cols=92 Identities=10% Similarity=0.156 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHc--cCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHH
Q 042039 265 NCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCN--DGQMDKAHDLFLDMEEN-AVAPNVIIFVTLIHGF 341 (376)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 341 (376)
+.++..+.+.|-..+|...+..+... .||+...|..+++.=.. .-+..-+..+++.+... | .++..|...+.--
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 45667777888899999999998876 67788888877764322 22377888899888754 5 5778888887777
Q ss_pred hhcCChhhHHHHHHHHHh
Q 042039 342 VRINKPSKVIELLHKMKE 359 (376)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~ 359 (376)
...|.++.+-.++.++.+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 789999998888777654
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.20 E-value=2.1 Score=27.69 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 315 AHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
+.+-+..+...++.|++.+....+++|.+.+++.-|.++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444445555555555555555444443
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.20 E-value=7.1 Score=33.77 Aligned_cols=121 Identities=10% Similarity=0.043 Sum_probs=72.5
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHH
Q 042039 62 CHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAE 141 (376)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 141 (376)
...|+...|-+-+...++.. +.++.............|+++.+...+....+. +.....+...+++.....|+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566665544444433331 112333333344556778888888877766543 2334567777888888888888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 142 ELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
..-+-|....+. ++.............|-++++.-.|+++...
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 888777765533 3333333333334456678888888887764
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.86 E-value=5.5 Score=31.74 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCC-----C-CCCh-------hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCch
Q 042039 20 NTIIDGLCKEGFVDKAKALFLQMKGEN-----I-NPDV-------VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSV 86 (376)
Q Consensus 20 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (376)
..-.+.+.-..|+..|++..++-.+.= . .++. .....=|.+++..++|.+++...-+--+..-+...
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 333344555567777777766654321 0 1110 01122245666666666665555444332222223
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-----hcCcHHHHHHHH
Q 042039 87 VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFC-----LTGKINRAEELF 144 (376)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 144 (376)
.+...-+-.|.+.+++..+.++-..-++..-..+..-|..++..|. -.|.+++|+++.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3444444556666666666665555554311112223444444333 335556555554
No 325
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=3.3 Score=32.07 Aligned_cols=85 Identities=15% Similarity=0.004 Sum_probs=51.2
Q ss_pred HHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHH
Q 042039 201 LFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIA 280 (376)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (376)
|.....++.|+..+.+.+..+ |....-|..-+.++.+..+++.+..--+++.+.... .......++.+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccHH
Confidence 445556677777666666543 222344555666667777777776666665554311 234445566666677777777
Q ss_pred HHHHhcc
Q 042039 281 LELFRSL 287 (376)
Q Consensus 281 ~~~~~~~ 287 (376)
+..+++.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7777765
No 326
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.80 E-value=8.4 Score=33.71 Aligned_cols=178 Identities=11% Similarity=0.110 Sum_probs=116.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
|-...-+++..+..+.+++-...+..+|...| .+...|..++.+|... ..++-..+|+++.+.... |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45566778888888888888888888888875 4677888899999888 668888899988876444 4444444444
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCC--C---hhhHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHc
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRP--N---AFTYSTLMDGFCLTGKINRAEELFGSMESM-GCKHDDVSYNILINGYCK 168 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 168 (376)
. ...++.+.+..+|.++..+-++. + ...|..+... -..+.+....+..++... |...-...+.-+-.-|..
T Consensus 141 ~-yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 K-YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred H-HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4 44488888888888887653221 1 1233333321 145666666666666443 333344455566677888
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042039 169 NKEVEEALSLYREMVSKGIKPTVVTYNTLFLG 200 (376)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (376)
..++++|++++...++.+ ..|..+...++..
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 899999999999877763 2244444444433
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.55 E-value=12 Score=35.12 Aligned_cols=227 Identities=17% Similarity=0.091 Sum_probs=115.1
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChh-------hHHHH-HHHHHhcCcHHHHHHHHHHHHhcC----CCCChhhHHHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRPNAF-------TYSTL-MDGFCLTGKINRAEELFGSMESMG----CKHDDVSYNIL 162 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 162 (376)
......++.+|..++.++...-..|+.. .+..+ .......|+++.|.++.+.....- ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4456788999999988887642222211 12222 223345688899888888776541 12334456677
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCHh---HHHHH--HHHHHhccchHHH--HHHHHHHHhcC---CC---CCcchH
Q 042039 163 INGYCKNKEVEEALSLYREMVSKGIKPTVV---TYNTL--FLGLFEIHQVEHA--LKLFEEMQRDD---VA---ADTSTY 229 (376)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~~~~a--~~~~~~~~~~~---~~---~~~~~~ 229 (376)
+.+..-.|++++|..+..+..+..-.-+.. .|..+ ...+...|+...+ ...+....... .+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 778888899999998888766531122222 22222 2334455633222 22232222221 01 112234
Q ss_pred HHHHHHHHhC-CCHHHHHHHHHHhcccCCCchH--HHHHHHHHHHHhCCChHHHHHHHhcccccCCCC----CHHHHHHH
Q 042039 230 NTFIDGLCKN-GYIVEAVELFRTLGILKCELDI--QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVA----DVVTYNIM 302 (376)
Q Consensus 230 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 302 (376)
..+..++.+. +...++..-++-.......|-. ..+..++......|+.++|...+.++......+ +...-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444444441 1222222222222222112111 122367777888999999998888765432222 22222222
Q ss_pred HHH--HHccCChhHHHHHHHH
Q 042039 303 IHG--LCNDGQMDKAHDLFLD 321 (376)
Q Consensus 303 ~~~--~~~~~~~~~a~~~~~~ 321 (376)
+.. -...|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 2356777777666555
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.31 E-value=2.3 Score=27.52 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=15.0
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 042039 109 LDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGS 146 (376)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 146 (376)
++.+...+..|++.+....+++|.+.+++..|.++|+.
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~ 67 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEA 67 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33333333333333344444444444444444444433
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.30 E-value=0.66 Score=23.04 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
+|..+...+...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555555555555555544
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.26 E-value=0.7 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=15.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
+|..++..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666665554
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.23 E-value=13 Score=34.92 Aligned_cols=225 Identities=15% Similarity=0.102 Sum_probs=121.8
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCChh-------hHHHH-HHHHHccCcHHHHHHHHHHHHHC----CCCCCHhHHHH
Q 042039 129 DGFCLTGKINRAEELFGSMESMGCKHDDV-------SYNIL-INGYCKNKEVEEALSLYREMVSK----GIKPTVVTYNT 196 (376)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 196 (376)
.......++++|..++.++...-..|+.. .+..+ .......|++++|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 34456788999999998886543222221 22222 23345578999999999888774 12233555667
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHH---H--HHHHHhCCCH--HHHHHHHHHhccc----CC--CchHHH
Q 042039 197 LFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNT---F--IDGLCKNGYI--VEAVELFRTLGIL----KC--ELDIQA 263 (376)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~--~~a~~~~~~~~~~----~~--~~~~~~ 263 (376)
+..+..-.|++++|..+.....+..-..+...+.. + ...+...|.. .+....+...... .. .+-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77788888999999998877665522223222222 2 2234556632 2222222222111 00 112234
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcccccC--CCCCH--H--HHHHHHHHHHccCChhHHHHHHHHHHHcCCC----CcHHH
Q 042039 264 YNCLIDGLCKSGRLEIALELFRSLPRRV--LVADV--V--TYNIMIHGLCNDGQMDKAHDLFLDMEENAVA----PNVII 333 (376)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 333 (376)
...+..++.+ .+.+..-.....+.+ ..|.. . .+..|+......|++++|...++++...... ++...
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4455555544 333333222222111 11222 1 2236778888999999999999988754222 22222
Q ss_pred HHHHHH--HHhhcCChhhHHHHHHH
Q 042039 334 FVTLIH--GFVRINKPSKVIELLHK 356 (376)
Q Consensus 334 ~~~l~~--~~~~~g~~~~a~~~~~~ 356 (376)
-...+. .-...|+.+++.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222332 22457888887777665
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.23 E-value=0.35 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=9.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh
Q 042039 57 LIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
++.++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.23 E-value=2 Score=28.15 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=15.1
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 042039 108 LLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSM 147 (376)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 147 (376)
-++.+...+..|++.+....+++|.+.+++..|.++|+.+
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444443
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.17 E-value=4.1 Score=28.99 Aligned_cols=51 Identities=16% Similarity=0.045 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 239 NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
.++++++..++..+....+. .+..-..-+..+...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555433221 1222222233345556666666666555543
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.96 E-value=0.77 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=17.3
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhCCCCC
Q 042039 337 LIHGFVRINKPSKVIELLHKMKEKKVMP 364 (376)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~p 364 (376)
|.++|...|+.+.|.+++++..+.|-.|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 5566666666666666666666554433
No 336
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.90 E-value=7.8 Score=31.70 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=42.5
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----c
Q 042039 133 LTGKINRAEELFGSMESMGCKHDDVSYNILINGYCK----NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE----I 204 (376)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 204 (376)
..+++..+...+......+ +......+...|.. ..+..+|...|....+.|.. .....+...+.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 4456777777777766543 22333344444433 33456677777655554322 223334444433 2
Q ss_pred cchHHHHHHHHHHHhcC
Q 042039 205 HQVEHALKLFEEMQRDD 221 (376)
Q Consensus 205 ~~~~~a~~~~~~~~~~~ 221 (376)
.+..+|...+.++.+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 25555666666665554
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=11 Score=33.77 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=105.9
Q ss_pred ChhhHHHHHHH-----HHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhH
Q 042039 15 NTVTYNTIIDG-----LCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTF 89 (376)
Q Consensus 15 ~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (376)
|+..|..+++. ..-.|+++.|..++..+. ....+.++..+..+|-.++|+++- +|+.
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d-- 641 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD-- 641 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh--
Confidence 45555554443 344577777777554443 234455667777777777776542 2222
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
.-.....+.|+++.|.++..+.. +..-|..|.++....+++..|.++|.+..+ |..|+-.+...
T Consensus 642 -~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~ 705 (794)
T KOG0276|consen 642 -QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSS 705 (794)
T ss_pred -hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhc
Confidence 12345567888888888765542 457788999999999999999999987654 34566667777
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHH
Q 042039 170 KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEM 217 (376)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (376)
|+-+....+-....+.|.. +. ...++...|+++++.+++..-
T Consensus 706 g~~~~l~~la~~~~~~g~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 706 GNAEGLAVLASLAKKQGKN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred CChhHHHHHHHHHHhhccc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 7776666666666665432 32 234566778888888877654
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.59 E-value=0.49 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=10.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHH
Q 042039 302 MIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
++.++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.43 E-value=0.61 Score=21.67 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=6.2
Q ss_pred HHHHHhCCChHHHHHH
Q 042039 268 IDGLCKSGRLEIALEL 283 (376)
Q Consensus 268 ~~~~~~~~~~~~a~~~ 283 (376)
+.++...|++++|..+
T Consensus 8 a~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 8 ARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3333333444433333
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.25 E-value=15 Score=33.97 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=87.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhC
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINP---DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKN 99 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (376)
++.+.+.+.+++|+++.+..... .| -......++..+...|++++|-...-.|... +..-|..-...+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56778889999999988766544 33 3456777888888899999998888887653 555566555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH------------------HhcCCCCChhhHHH
Q 042039 100 GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSM------------------ESMGCKHDDVSYNI 161 (376)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------~~~~~~~~~~~~~~ 161 (376)
++......++ .......++..|..++..+.. .+...-.++.... .+. ..+......
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~ 510 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEV 510 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHH
Confidence 5544332221 111111234455555555544 2222111111110 010 122234455
Q ss_pred HHHHHHccCcHHHHHHHHHHHHH
Q 042039 162 LINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
|+..|...++++.|++.+-.+.+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHccChHHHHHHHHhccC
Confidence 88888888899998888876554
No 341
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.15 E-value=2.4 Score=37.40 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=50.6
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHH
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEAL 176 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (376)
...|+...|...+.................++....+.|....|..++.+..... ...+-++..+++++....+.++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3456666666666655543222223344455556666666666666666665554 334445556666666666677777
Q ss_pred HHHHHHHHC
Q 042039 177 SLYREMVSK 185 (376)
Q Consensus 177 ~~~~~~~~~ 185 (376)
+.|+++.+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 776666664
No 342
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.04 E-value=0.15 Score=36.39 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=23.6
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLF 74 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 74 (376)
+..+.+.+.......+++.+...+...+....+.++..|++.++.++..+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3344444455555555555544433334444555555555554444444444
No 343
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.89 E-value=1.6 Score=38.38 Aligned_cols=102 Identities=12% Similarity=-0.126 Sum_probs=70.6
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHH
Q 042039 224 ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMI 303 (376)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (376)
|-...++.....+...|+...|...+..+....+.-.......++....+.|-...|..++.+.+... ...+-++..++
T Consensus 605 p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g 683 (886)
T KOG4507|consen 605 PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLG 683 (886)
T ss_pred CeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcc
Confidence 33334444444455678888888888877654433333455667777777777788888887766553 34566777888
Q ss_pred HHHHccCChhHHHHHHHHHHHcC
Q 042039 304 HGLCNDGQMDKAHDLFLDMEENA 326 (376)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~ 326 (376)
.++....+.+.|++.|+++.+..
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcC
Confidence 88888888999999888888754
No 344
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.42 E-value=0.33 Score=39.37 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=47.1
Q ss_pred cCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCcHHHHH
Q 042039 63 HANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN-AFTYSTLMDGFCLTGKINRAE 141 (376)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 141 (376)
..|.++.|++.|...+..+ ++....|..-..++.+.+.+..|++-+...+..+ || ..-|-.-..+....|++.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4555666666666666543 2244445555556666666666666666655542 22 222333333444456666666
Q ss_pred HHHHHHHhcCC
Q 042039 142 ELFGSMESMGC 152 (376)
Q Consensus 142 ~~~~~~~~~~~ 152 (376)
..++...+.+.
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 66666666543
No 345
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.35 E-value=8.1 Score=34.51 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=48.0
Q ss_pred HhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHH
Q 042039 202 FEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIAL 281 (376)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 281 (376)
.+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+-..
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3455555555544332 2444556666666666666666666655432 223344444455544433
Q ss_pred HHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 042039 282 ELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLD 321 (376)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (376)
.+-....+.|. .+....+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 33333333321 12222345556666666666544
No 346
>PRK09687 putative lyase; Provisional
Probab=88.93 E-value=11 Score=30.61 Aligned_cols=235 Identities=14% Similarity=0.061 Sum_probs=143.2
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCCh----HHHHHHHHHHHhcCCCCChhh
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKM----DEASRLLDLMVQRDVRPNAFT 123 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 123 (376)
.+|.......+..+...|. +++...+..+... ++...-...+.++...|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4466677777777777775 3444444555442 3555555666677777763 4677777776443 345555
Q ss_pred HHHHHHHHHhcCc-----HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042039 124 YSTLMDGFCLTGK-----INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLF 198 (376)
Q Consensus 124 ~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 198 (376)
-...+.++...+. ...+...+..... .++..+-...+.++.+.++ ++++..+-.+.+. ++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 5555555554432 1233444433333 3466667777778877776 5677777777763 4555555556
Q ss_pred HHHHhcc-chHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCCh
Q 042039 199 LGLFEIH-QVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRL 277 (376)
Q Consensus 199 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (376)
.++...+ +.+.+...+..+.. .++..+-...+.++.+.++. .++..+-.....+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6665543 24466666666664 34667777888888888884 5555555554432 2 234677888888885
Q ss_pred HHHHHHHhcccccCCCCCHHHHHHHHHHHH
Q 042039 278 EIALELFRSLPRRVLVADVVTYNIMIHGLC 307 (376)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (376)
+|...+..+.+. .+|..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888887764 347766666666554
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.64 E-value=0.28 Score=35.02 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=51.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 042039 57 LIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK 136 (376)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (376)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556667777777777877776655556777778888888877767766666511 11222345555666666
Q ss_pred HHHHHHHHHHH
Q 042039 137 INRAEELFGSM 147 (376)
Q Consensus 137 ~~~a~~~~~~~ 147 (376)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66665555543
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.52 E-value=6.9 Score=30.00 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 042039 91 VIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
..+..+.+.+.+.+++...++-++.. +.|...-..++..++-.|++++|..-++-.-..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 34445556666666666666655543 334455556666666666666666655555443
No 349
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.18 E-value=8.5 Score=28.27 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=83.2
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 36 KALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
.+++..+.+.+++|+...+..++..+.+.|++.....+ +..++-+|.......+-. ..+....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHH--hHccChHHHHHHHHHHHH
Confidence 34556667778899999999999999999987765554 444555555444333322 223344455555555543
Q ss_pred CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 116 DVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
= . ..+..+++.+...|++-+|.++.+...... ......++.+..+.+|...-..+++-...
T Consensus 88 L-~---~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 L-G---TAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-h---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1 244567778888999999999887764322 22234456666666776655555555444
No 350
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.13 E-value=22 Score=32.91 Aligned_cols=155 Identities=10% Similarity=0.051 Sum_probs=65.7
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHh--
Q 042039 162 LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD-VAADTSTYNTFIDGLCK-- 238 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 238 (376)
....+.-.|+++.|++.+-. ..+...+...+...+..+.-.+-.+... ..+.... ..+.+--+..++..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34455668999999998877 1122334444433333322222111111 2222211 01122456777777765
Q ss_pred -CCCHHHHHHHHHHhcccCCCchHHHHHH-HHHHHHhCCChHHHHHHHhcccccC---------------CCC-CH---H
Q 042039 239 -NGYIVEAVELFRTLGILKCELDIQAYNC-LIDGLCKSGRLEIALELFRSLPRRV---------------LVA-DV---V 297 (376)
Q Consensus 239 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~-~~---~ 297 (376)
..++.+|.+++--+.....+.....+.. +.......++++ .++..+...| ... +. .
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~ 415 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLRE 415 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeeccccccCCCCcHHHHHH
Confidence 5678899998887765543222333322 222233333222 2222211111 111 11 2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
.....+.-+...|++++|+.+|+-+.+
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly~La~~ 442 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLYHLAEE 442 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 233445557778899999888887654
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.08 E-value=3.7 Score=28.10 Aligned_cols=46 Identities=9% Similarity=0.019 Sum_probs=29.9
Q ss_pred HHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 279 IALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
+..+-+..+....+.|++.....-+++|.+.+++..|.++|+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555667777777777777777777777777766654
No 352
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.97 E-value=23 Score=32.95 Aligned_cols=115 Identities=12% Similarity=0.063 Sum_probs=58.7
Q ss_pred CcHHHHHHHHHHHHhcC-CCCC--hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHH
Q 042039 135 GKINRAEELFGSMESMG-CKHD--DVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHAL 211 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (376)
.+.+.|...+....... ..+. ...+..++......+..+++...+...... ..+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHH
Confidence 34566666666653322 1111 112223332222222234455555443322 123333444455555677777777
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 212 KLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
..+..|.... .....-...+++++...|+.++|...|+.+
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777664432 334455666777766777777777777776
No 353
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=11 Score=29.31 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=7.9
Q ss_pred CCChHHHHHHHHHH
Q 042039 99 NGKMDEASRLLDLM 112 (376)
Q Consensus 99 ~~~~~~a~~~~~~~ 112 (376)
.+.+++|.+++.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 34566666666544
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.80 E-value=42 Score=35.84 Aligned_cols=288 Identities=10% Similarity=0.056 Sum_probs=147.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHh
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCK 98 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (376)
|..+...|..-++++...-+...-.. .|+ ...-+......|+|..|...|+.+.+.+.. ...+++.++.....
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~ 1495 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLA 1495 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhc
Confidence 33344467777777766666553111 122 333455567789999999999999987422 46778888888888
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHH--HHHHHHc--cCcHH
Q 042039 99 NGKMDEASRLLDLMVQRDVRPNAFTYS-TLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNI--LINGYCK--NKEVE 173 (376)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~ 173 (376)
.|.+.......+-..... .+....++ .-..+--+.++++.....+. .. +...|.. ++....+ ..|.-
T Consensus 1496 ~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~ 1567 (2382)
T KOG0890|consen 1496 IQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEI 1567 (2382)
T ss_pred ccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchh
Confidence 888888887666665442 22333333 33444467788887777765 11 1222222 2333322 22222
Q ss_pred HHHHHHHHHHHCCCCC---------CHhHHHHHHHHHHhccchHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhCCCHH
Q 042039 174 EALSLYREMVSKGIKP---------TVVTYNTLFLGLFEIHQVEHALKLFEEMQRD-DVAADTSTYNTFIDGLCKNGYIV 243 (376)
Q Consensus 174 ~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 243 (376)
.-.+.++.+.+.-+.| -...|..++..+.-.. .+...+.+...... ....+..-|..-+..-....+..
T Consensus 1568 ~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ 1646 (2382)
T KOG0890|consen 1568 ATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIK 1646 (2382)
T ss_pred hHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHH
Confidence 2223333333221111 0122222222221111 11111111111000 00111111111221111111122
Q ss_pred HHHHHHHHhc----cc-CC-CchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHH
Q 042039 244 EAVELFRTLG----IL-KC-ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHD 317 (376)
Q Consensus 244 ~a~~~~~~~~----~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 317 (376)
+-+--+++.. .. +. .--...|...++.....|.++.|...+-.+.+.+ -+..+...+......|+...|+.
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHH
Confidence 2222222211 11 11 1235678888888888999999998887777653 34556677788888999999999
Q ss_pred HHHHHHHc
Q 042039 318 LFLDMEEN 325 (376)
Q Consensus 318 ~~~~~~~~ 325 (376)
++++..+.
T Consensus 1724 ~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1724 VLQEILSK 1731 (2382)
T ss_pred HHHHHHHh
Confidence 99988754
No 355
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.73 E-value=19 Score=31.73 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 157 VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
....+++..+..+-.+.-...+..+++.- ..+...+..++++|... ..++-..+|+++.+.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33444444444444444444444444442 22334444444444444 334444444444443
No 356
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=15 Score=30.08 Aligned_cols=48 Identities=8% Similarity=0.136 Sum_probs=28.5
Q ss_pred ChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 042039 276 RLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDME 323 (376)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (376)
+.++++.++..=+..|+-||..++..++..+.+.+++.+|..+.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455666666555566666666666666666666666666655554444
No 357
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.35 E-value=24 Score=32.62 Aligned_cols=168 Identities=11% Similarity=0.056 Sum_probs=96.8
Q ss_pred ChhhHHHHHHHHH-hcCChhHHHHHHHHhhhCCCCCChh-----hHHHHHHHHhcCCChHHHHHHHHHHHhcCCC----C
Q 042039 15 NTVTYNTIIDGLC-KEGFVDKAKALFLQMKGENINPDVV-----TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ----P 84 (376)
Q Consensus 15 ~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~ 84 (376)
+..++..+...+. ...+++.|...+++.......++.. ....++..+.+.+... |...+++.++.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3456667777776 5689999999999875543233221 2335567777776655 88888887764211 2
Q ss_pred chHhHHHH-HHHHHhCCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hcCcHHHHHHHHHHHHhcC-------
Q 042039 85 SVVTFNVI-MDELCKNGKMDEASRLLDLMVQRD---VRPNAFTYSTLMDGFC--LTGKINRAEELFGSMESMG------- 151 (376)
Q Consensus 85 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~------- 151 (376)
-...+..+ +..+...++...|.+.++.+.... ..|...++..+..+.. +.+..+++.+.++.+....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22233333 223333478999999998887642 2333444444444433 4455666777666663221
Q ss_pred --CCCChhhHHHHHHHH--HccCcHHHHHHHHHHHH
Q 042039 152 --CKHDDVSYNILINGY--CKNKEVEEALSLYREMV 183 (376)
Q Consensus 152 --~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 183 (376)
.+|...+|..++..+ ...|+++.+...++++.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123444566665544 45677666666655543
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.26 E-value=14 Score=29.81 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 042039 159 YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (376)
++.....|...|.+.+|.++.++.+.. -+.+...+..++..+...|+--.+.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556677777777777777777665 24456666677777777777666666665553
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.67 E-value=15 Score=29.62 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=56.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh-----CCCCCchHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE-----KKVMPDASIVS 370 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 370 (376)
++......|..+|.+.+|.++.++.+..+ +.+...+..|+..+...|+--.+.+.++++.+ .|+..|..+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 45566778899999999999999998764 33677788888999999998888888887753 47777776654
No 360
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.59 E-value=14 Score=28.94 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHhcCCCCch-HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCcHHHHHH
Q 042039 65 NDWNEAKRLFFEMMDQGVQPSV-VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN-AFTYSTLMDGFCLTGKINRAEE 142 (376)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 142 (376)
.++..|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..--.+.++. .|| +.....+.........++.|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3444444444444432 2222 22233333444444444444444444432 222 2233333444444444444444
Q ss_pred HHHHH
Q 042039 143 LFGSM 147 (376)
Q Consensus 143 ~~~~~ 147 (376)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 44444
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.55 E-value=18 Score=30.23 Aligned_cols=82 Identities=9% Similarity=-0.034 Sum_probs=43.7
Q ss_pred CCChhhHHHHHHHHhcCC------------ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 48 NPDVVTYNSLIHGLCHAN------------DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
|.|+.+|..++..--..- -.+.-+.+++++++.++ .+...+..++..+.+..+.++..+-+++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556667666654322211 13344566666666533 24555555666666666666666666666665
Q ss_pred CCCCChhhHHHHHHHH
Q 042039 116 DVRPNAFTYSTLMDGF 131 (376)
Q Consensus 116 ~~~~~~~~~~~l~~~~ 131 (376)
. +-+...|...+...
T Consensus 95 ~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 95 N-PGSPELWREYLDFR 109 (321)
T ss_pred C-CCChHHHHHHHHHH
Confidence 2 22445555554443
No 362
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.49 E-value=15 Score=29.28 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=25.5
Q ss_pred cCChhHHHHHHHHhhhCCCCCCh---hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 042039 29 EGFVDKAKALFLQMKGENINPDV---VTYNSLIHGLCHANDWNEAKRLFFEMM 78 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 78 (376)
....++|+.-|++..+....... .+...++....+.+++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34566666666665544212222 233444555556666666655555554
No 363
>PRK12798 chemotaxis protein; Reviewed
Probab=85.60 E-value=22 Score=30.44 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=80.4
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HccCcHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhccch
Q 042039 133 LTGKINRAEELFGSMESMGCKHDDVSYNILINGY-CKNKEVEEALSLYREMVSKGIKPT----VVTYNTLFLGLFEIHQV 207 (376)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 207 (376)
-.|+-.++.+.+..+.....++....+..|+.+- ....++.+|+.+|+...-. .|. ......-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 3677777777777776655566666666665543 3355677777777776542 232 23333444455666777
Q ss_pred HHHHHHHHHHHhc-CCCCC-cchHHHHHHHHHhCCC---HHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHH
Q 042039 208 EHALKLFEEMQRD-DVAAD-TSTYNTFIDGLCKNGY---IVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALE 282 (376)
Q Consensus 208 ~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 282 (376)
+++..+-....+. ...|- ......+...+.+..+ .+.-..++..| ...--...|..+.+.-.-.|+.+-|.-
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~---d~~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFM---DPERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhc---CchhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 7665555444333 11111 1222233333333332 22222233222 212234567777777777777777766
Q ss_pred HHhcccc
Q 042039 283 LFRSLPR 289 (376)
Q Consensus 283 ~~~~~~~ 289 (376)
.-++...
T Consensus 279 As~~A~~ 285 (421)
T PRK12798 279 ASERALK 285 (421)
T ss_pred HHHHHHH
Confidence 6665544
No 364
>PRK09687 putative lyase; Provisional
Probab=85.46 E-value=18 Score=29.41 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 295 DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
+..+-...+.++.+.++ ..|+..+-+..+.+ + .....+.++...|.. +|...+..+.+
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 34444444444444444 23444333333321 1 122344444445543 35555555543
No 365
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.34 E-value=21 Score=29.86 Aligned_cols=135 Identities=7% Similarity=0.015 Sum_probs=79.4
Q ss_pred chHhHHHHHHHHHhCC------------ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 042039 85 SVVTFNVIMDELCKNG------------KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGC 152 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 152 (376)
|+.+|..++..--..- -.+.-+.+++++++.+ +.+......++..+.+..+.+...+-++++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 6777777765433221 1345567778877774 3456677777888888888888888888887764
Q ss_pred CCChhhHHHHHHHHHc---cCcHHHHHHHHHHHHHC------CC----CCC-------HhHHHHHHHHHHhccchHHHHH
Q 042039 153 KHDDVSYNILINGYCK---NKEVEEALSLYREMVSK------GI----KPT-------VVTYNTLFLGLFEIHQVEHALK 212 (376)
Q Consensus 153 ~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~-------~~~~~~l~~~~~~~~~~~~a~~ 212 (376)
+.+...|...+..... .-.++....+|.+.++. +. .+. ...+..+.......|..+.|..
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 4466677766665544 23456666666655442 11 000 1222333333445566666666
Q ss_pred HHHHHHhcC
Q 042039 213 LFEEMQRDD 221 (376)
Q Consensus 213 ~~~~~~~~~ 221 (376)
+++.+.+.+
T Consensus 176 ~~Qa~lE~n 184 (321)
T PF08424_consen 176 LWQALLEFN 184 (321)
T ss_pred HHHHHHHHH
Confidence 666665543
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.95 E-value=1.9 Score=20.29 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=9.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHH
Q 042039 56 SLIHGLCHANDWNEAKRLFFEM 77 (376)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~ 77 (376)
.+..++...+++++|...++..
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3333444444444444444433
No 367
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.92 E-value=4.1 Score=22.52 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=25.4
Q ss_pred HhhcCChhhHHHHHHHHHhCCCCCchHHHHHHHh
Q 042039 341 FVRINKPSKVIELLHKMKEKKVMPDASIVSMVVD 374 (376)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 374 (376)
..+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777778888888888888888887777765
No 368
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.90 E-value=20 Score=29.33 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHhcccCCCchHHHHH
Q 042039 241 YIVEAVELFRTLGILKCELDIQAYN 265 (376)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (376)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6667777777766665544444333
No 369
>PRK10941 hypothetical protein; Provisional
Probab=84.59 E-value=15 Score=29.68 Aligned_cols=60 Identities=15% Similarity=-0.047 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 265 NCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
..+-.+|.+.++++.|+.+.+.+... .|.++.-+..-+-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l-~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF-DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34444455556666666665555544 3334444555555555566666655555555543
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.32 E-value=19 Score=28.68 Aligned_cols=203 Identities=12% Similarity=0.089 Sum_probs=126.8
Q ss_pred CCCCchHhHHHHHHH-HHhCCChHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCcHHHHHHHHHHHHhc---CC-
Q 042039 81 GVQPSVVTFNVIMDE-LCKNGKMDEASRLLDLMVQRDVRPNAF---TYSTLMDGFCLTGKINRAEELFGSMESM---GC- 152 (376)
Q Consensus 81 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 152 (376)
+..||+..-+..-.+ -.+..++++|+.-|++.++.......+ +...++....+.+++++..+.|.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445666554433222 124458999999999998864333333 4456788899999999999999887532 11
Q ss_pred -CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC-----CCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC--
Q 042039 153 -KHDDVSYNILINGYCKNKEVEEALSLYREMVSK-----GIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA-- 224 (376)
Q Consensus 153 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 224 (376)
..+..+.+.++..-....+.+--..+|+.-++. +-+.=-.|-..+...|...+.+.+..+++.++..+--..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 234556777777777677776666666654331 111112233567888899999999999988886542111
Q ss_pred ---------CcchHHHHHHHHHhCCCHHHHHHHHHHhcccC-CCchHHHHHHHHHH-----HHhCCChHHHHHHH
Q 042039 225 ---------DTSTYNTFIDGLCKNGYIVEAVELFRTLGILK-CELDIQAYNCLIDG-----LCKSGRLEIALELF 284 (376)
Q Consensus 225 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~ 284 (376)
-...|..=++.|....+-.+...++++..... .-|.+... .+++- ..+.|++++|..-|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHH
Confidence 12356666778888888777788888765432 23444433 33333 35678888876543
No 371
>PRK10941 hypothetical protein; Provisional
Probab=83.47 E-value=22 Score=28.70 Aligned_cols=76 Identities=11% Similarity=-0.037 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcC-CCCChhhHHHHHHH
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRD-VRPNAFTYSTLMDG 130 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 130 (376)
.+.+-.+|.+.++++.|+.+.+.+....+. ++.-+..-.-.|.+.|.+..|..-++..++.. -.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 455667788888999999988888886433 55666667777888888888888888887653 22334444444433
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.35 E-value=5.7 Score=24.68 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=26.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCChhhHHHH
Q 042039 308 NDGQMDKAHDLFLDMEENAVAPN--VIIFVTLIHGFVRINKPSKVIEL 353 (376)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 353 (376)
...+.++|+..|..+++....+. -.++..++.+|...|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777766665432222 23455556667777777666554
No 373
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.10 E-value=23 Score=28.66 Aligned_cols=185 Identities=9% Similarity=0.071 Sum_probs=110.6
Q ss_pred CCChhhHHHHHHHHHhc----CC---hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh-cCCCC
Q 042039 13 KPNTVTYNTIIDGLCKE----GF---VDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMD-QGVQP 84 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~----g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~ 84 (376)
.|....+..++.-|... |. -++-+..++-....-......-|..|+. ......+|+++|+..-. ..+--
T Consensus 86 ~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~ 162 (292)
T PF13929_consen 86 DPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVK---RNKIVVEALKLYDGLNPDESIIF 162 (292)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHH---hhHHHHHHHHHhhccCcccceee
Confidence 45555555555544432 21 1334444444333211111122555442 23456778888873221 22444
Q ss_pred chHhHHHHHHHHHh-CC-ChHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCCChhhHH
Q 042039 85 SVVTFNVIMDELCK-NG-KMDEASRLLDLMVQ-RDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESM-GCKHDDVSYN 160 (376)
Q Consensus 85 ~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 160 (376)
|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++..+++..-.++++..... +...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 77788888887766 22 22222233333332 234667788889999999999999999999988765 4567888999
Q ss_pred HHHHHHHccCcHHHHHHHHHHH-----HHCCCCCCHhHHHHHHHH
Q 042039 161 ILINGYCKNKEVEEALSLYREM-----VSKGIKPTVVTYNTLFLG 200 (376)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~ 200 (376)
.++..-...|+..-..++.++- .+.++..+...-..+-+.
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 9999999999988777777642 334555555554444443
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.89 E-value=17 Score=31.09 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=39.7
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCChh--hHHHHHHHHhcC--CChHHHHHHHHHHHhc
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINPDVV--TYNSLIHGLCHA--NDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~--~~~~~a~~~~~~~~~~ 80 (376)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|... -++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456888999999999998876 555544 455555555544 4677888888887654
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=82.72 E-value=5.5 Score=23.50 Aligned_cols=30 Identities=13% Similarity=0.384 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 330 NVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
|..-.-.++.+|.+.|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445566777777777777777777653
No 376
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.70 E-value=11 Score=24.62 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042039 137 INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTL 197 (376)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (376)
....++.++++...+....+.....|.-.|.+.|+.+.|.+-|+.-.. .-|.+.+|...
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDF 111 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDF 111 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHH
Confidence 344455666666666555556666777778888888888887776554 34555555433
No 377
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.22 E-value=15 Score=25.82 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHHHHhCCC---hHHHHHHHhcccccC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 258 ELDIQAYNCLIDGLCKSGR---LEIALELFRSLPRRV-LVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
.++..+-..+..++.+..+ ..+.+.+++.+.+.. ..........+.-++.+.+++++++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4455666666777766554 445556666666421 1122334455666777777777777777777664
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.21 E-value=24 Score=28.33 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHHHhc
Q 042039 259 LDIQAYNCLIDGLCKSGRLEIALELFRS 286 (376)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (376)
.++.....++..|.+.|++.+|...|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3667777777777777777777766643
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.16 E-value=15 Score=25.80 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHHhcCC---ChHHHHHHHHHHHhc-CCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 49 PDVVTYNSLIHGLCHAN---DWNEAKRLFFEMMDQ-GVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 49 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
++..+-..+..++.+.. +..+.+.+++.+.+. ...........+.-++.+.++++++.++.+.+++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444445555555443 334455555555541 11112233334444555666666666666666554
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.09 E-value=25 Score=28.31 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=10.6
Q ss_pred HHHhcCCChHHHHHHHHHHHh
Q 042039 59 HGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~ 79 (376)
..+.-..||..|++..++..+
T Consensus 43 d~LvV~rdF~aal~tCerglq 63 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQ 63 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555443
No 381
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.86 E-value=34 Score=29.17 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=35.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhc--CCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQ--GVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQ 114 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (376)
.+.-+...|...|+++.|++.|-+.+.. ..+..+..|..++......|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4555666666677777777776664432 1112334455556666666666666555555544
No 382
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.71 E-value=25 Score=27.48 Aligned_cols=54 Identities=7% Similarity=0.180 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHHhc--C---CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 042039 135 GKINRAEELFGSMESM--G---CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIK 188 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~--~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 188 (376)
.+++.|+..|+..-+. + .......+..+...-...+++.+|+++|++.....+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666666655332 1 0111223444455556677888888888887765433
No 383
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=25 Score=27.68 Aligned_cols=62 Identities=15% Similarity=-0.025 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 263 AYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
.+.....++...|++-++++.-.++++. .+.|...|..-+.+.+..=+.++|..-|..+++.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3445556667778888888888887776 5667888888888888888888888888888875
No 384
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.19 E-value=1.8 Score=35.31 Aligned_cols=119 Identities=13% Similarity=-0.027 Sum_probs=80.7
Q ss_pred HHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCC-HHHHHHHHHHHHccCChhH
Q 042039 236 LCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVAD-VVTYNIMIHGLCNDGQMDK 314 (376)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 314 (376)
....|.++.|++.+...+..+ ++....|..-..++.+.+++..|++=+...... .|| ..-|-.-..+-.-.|++.+
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 456788999999998888776 446677777788888888888888888777764 333 3344444555666788999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 315 AHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
|...++.+.+.+..+....|.. ...-..+..++-...+++.++
T Consensus 201 aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHH
Confidence 9999998888776655544433 333444555555555555443
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.14 E-value=5.9 Score=34.18 Aligned_cols=106 Identities=10% Similarity=0.061 Sum_probs=74.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
.-+..+.+.+.++.|+.++.++++.+ +..+..|..-..++.+.+++..|+.=+.++++..+. -...|..-..++.+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 34556677888999999999998875 445556666668888999999998888888876422 3345555556677777
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 101 KMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
.+.+|...|+..... .|+..-....+.-
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHH
Confidence 888888888887764 5665444444443
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.06 E-value=12 Score=24.25 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=29.7
Q ss_pred HHhcCChhHHHHHHHHhh----hCCCCC----ChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 26 LCKEGFVDKAKALFLQMK----GENINP----DVVTYNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~----~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
..+.|++.+|.+.+.+.- ..+... -..+...+...+...|++++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446778887765555443 222111 022333445556666777777777766654
No 387
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.82 E-value=14 Score=23.89 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=19.1
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
|.|......+...+...|++++|++.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445556666666666666666666666666554
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.61 E-value=40 Score=29.11 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 123 TYSTLMDGFCLTGKINRAEELFGSMESMG-------CKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
+...+++.++-.||+..|.++++.+.-.. ..-...++..++-+|...+++.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999988763211 122445778888999999999999999988654
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.42 E-value=14 Score=23.94 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=13.7
Q ss_pred HHHHHhhcCChhhHHHHHHHHHh
Q 042039 337 LIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445556666666666666553
No 390
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.18 E-value=8.2 Score=33.34 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=62.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCchH-hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQGVQPSVV-TFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK 136 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (376)
+......+.++.|..++.++++. .|+.. .|..-..++.+.+++..|+.=...+++.. +-....|..-+.++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 44555667778888888887775 44433 33334467777777777777777777654 2224445455556666667
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 137 INRAEELFGSMESMGCKHDDVSYNILIN 164 (376)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (376)
+.+|...|+..... .|+..-....+.
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHH
Confidence 77777777776654 344444444443
No 391
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.97 E-value=40 Score=28.74 Aligned_cols=31 Identities=16% Similarity=-0.065 Sum_probs=20.3
Q ss_pred CCCHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 042039 188 KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (376)
+-...++..+...+...|+.+.|.+++++.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3356666666677777777777776666653
No 392
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.72 E-value=8.4 Score=23.96 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=7.7
Q ss_pred cCCChHHHHHHHHHHHh
Q 042039 63 HANDWNEAKRLFFEMMD 79 (376)
Q Consensus 63 ~~~~~~~a~~~~~~~~~ 79 (376)
...+.++|+..|...++
T Consensus 18 ~~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 18 HQNETQQALQKWRKALE 34 (80)
T ss_pred ccchHHHHHHHHHHHHh
Confidence 33444444444444444
No 393
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.55 E-value=29 Score=26.92 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=14.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 299 YNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
...++....+.|++++|.+.|.++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334445555556666666665555543
No 394
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.37 E-value=5.7 Score=32.10 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=22.3
Q ss_pred CChhh-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 042039 14 PNTVT-YNTIIDGLCKEGFVDKAKALFLQMKGENINP 49 (376)
Q Consensus 14 p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 49 (376)
||..+ |+..|....+.||+++|+.++++.++.|...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 34443 4466666667777777777777776666443
No 395
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.32 E-value=47 Score=29.25 Aligned_cols=109 Identities=14% Similarity=-0.022 Sum_probs=66.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHh---cCC--CCC---hhhHHHHHHHHHhcCcHHHHHHHHHHHHh-------cCCCCCh-
Q 042039 93 MDELCKNGKMDEASRLLDLMVQ---RDV--RPN---AFTYSTLMDGFCLTGKINRAEELFGSMES-------MGCKHDD- 156 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~- 156 (376)
...+...|++.+|.+++...-- .|. .|. ...|+.+.-++.+.|.+..+..+|.++.+ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3456667888888877754321 111 111 12235566666677777777666666553 2333221
Q ss_pred ---------hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 042039 157 ---------VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLF 202 (376)
Q Consensus 157 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (376)
....+.+-.|...|++-.|.+.|.+.... ...++..|..+.++|.
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 23344566777888888888888887765 4557777877777765
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.27 E-value=20 Score=24.82 Aligned_cols=31 Identities=3% Similarity=0.063 Sum_probs=12.6
Q ss_pred CCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 152 CKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
+-|++.....-++++.+.+|+..|.++|+-+
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.91 E-value=5.3 Score=23.54 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=10.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 042039 91 VIMDELCKNGKMDEASRLLDLMV 113 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~ 113 (376)
.++.++...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=76.77 E-value=23 Score=25.38 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 39 FLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
.+.+.+.|.+.+. .-..++..+.+.++.-.|.++++++.+.++..+..|....+..+...|
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344555544432 234455556666666677777777776665555555554555555444
No 399
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.75 E-value=19 Score=23.76 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=23.5
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 042039 59 HGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRD 116 (376)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (376)
..+.+.|++++|..+.+.. ..||...|..+.. .+.|..++...-+..+...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3444555555555554433 2345544444322 33444444444444444443
No 400
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.05 E-value=44 Score=27.68 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=27.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
+...-+..+..+-++.-....+.+ +.-..+|..|.. -..--..+|.++|++.++.
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN-~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEIN-NECATAYVLLAE--EEATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcC-chhhhHHHhhhh--hhhhhHHHHHHHHHHHHHH
Confidence 333334455555555555555554 223334433332 2223456777777777664
No 401
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.98 E-value=41 Score=27.32 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHhcc--chHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhCCCHHHHH
Q 042039 171 EVEEALSLYREMVS-KGIKPTVVTYNTLFLGLFEIH--QVEHALKLFEEMQRD-DVAADTSTYNTFIDGLCKNGYIVEAV 246 (376)
Q Consensus 171 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (376)
...+|+++|+..-. ..+-.|..+...+++...... ....-.++.+.+... +..++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653211 123345666666666555411 122222223333222 23455666666777777777777777
Q ss_pred HHHHHhccc-CCCchHHHHHHHHHHHHhCCChHHHHHHHhc
Q 042039 247 ELFRTLGIL-KCELDIQAYNCLIDGLCKSGRLEIALELFRS 286 (376)
Q Consensus 247 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (376)
+.+...... +...|...|...+......|+..-..++..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777665544 3444666677777777777777666666654
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.16 E-value=39 Score=26.70 Aligned_cols=57 Identities=11% Similarity=-0.039 Sum_probs=30.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcC-CChHHHHHHHHHH
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHA-NDWNEAKRLFFEM 77 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~ 77 (376)
.++..+-+.|+++++...+.++...+...+..-.+.+..+|-.. |....+.+.+..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 34555666677777777777777666555555555555554322 3334444444443
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.10 E-value=20 Score=27.13 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 293 VADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
.|++.++..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555544444
No 404
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=73.76 E-value=21 Score=26.65 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=9.1
Q ss_pred HHHhCCChHHHHHHHhccc
Q 042039 270 GLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~ 288 (376)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3444455555555444443
No 405
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.66 E-value=43 Score=26.49 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 193 TYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
.+....+++...|++-++++.-.++++.. +.+..+|..-+++....-+.++|..-|..+.+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34444455555555556665555555553 445555555555555555666666555555544
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.89 E-value=60 Score=27.83 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCC--CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGEN--INPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
..+.-+.+.|...|+++.|++.|.+...-- .+.....|..++..-...|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356678888999999999999999855431 1234556777888888889999888888777654
No 407
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.66 E-value=1.1e+02 Score=30.58 Aligned_cols=115 Identities=19% Similarity=0.109 Sum_probs=64.2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHC-----------------------CCCCC-----HhHHHHHHHHHHhccchHHHHHH
Q 042039 162 LINGYCKNKEVEEALSLYREMVSK-----------------------GIKPT-----VVTYNTLFLGLFEIHQVEHALKL 213 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~ 213 (376)
++.+|...|...+|+..|.++... |-.|+ ..-|..+++.+-+.+-.+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 444567788888888888776532 11111 23355666666677777777776
Q ss_pred HHHHHhcC---CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChH
Q 042039 214 FEEMQRDD---VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLE 278 (376)
Q Consensus 214 ~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (376)
-..+++.- .+.-..+++.+.+.....|.+.+|...+-+.... .-.......++..+..+|.++
T Consensus 1006 A~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1006 AVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchH
Confidence 66666542 1112234566666667777777776655442221 112334555566666666543
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.44 E-value=38 Score=25.35 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=10.2
Q ss_pred HHHhcCcHHHHHHHHHHHHh
Q 042039 130 GFCLTGKINRAEELFGSMES 149 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~ 149 (376)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555544
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.33 E-value=63 Score=27.82 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHccCcHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHH--hccchHHHHHHHHHHHhc
Q 042039 163 INGYCKNKEVEEALSLYREMVSKGIKPTVV--TYNTLFLGLF--EIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 220 (376)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455778888888888888876 555444 3444444443 355677888888777654
No 410
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.32 E-value=28 Score=27.73 Aligned_cols=58 Identities=14% Similarity=0.028 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhc----C-CCCChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQR----D-VRPNAFTYSTLMDGFCLTGKINRAEELFGS 146 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 146 (376)
...+...|...|++++|.++|+.+... | ..+...+...+..++...|+.+....+.=+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344556666666666666666666421 1 122244455566666666666665554433
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.03 E-value=31 Score=27.49 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=37.3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEEN----AV-APNVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
....++..|...|++++|.++|+.+... |. .+...+...+..++.+.|+.+..+.+.=++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666777777777777777776421 21 223445566667777778777776654444
No 412
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.00 E-value=47 Score=25.79 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 042039 124 YSTLMDGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 124 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
...++....+.|+.++|.++|.++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334455555566666666666666554
No 413
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.75 E-value=17 Score=20.62 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=15.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 300 NIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
..+..++.+.|++++|.+..+.+++.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555566666666666666666653
No 414
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.35 E-value=37 Score=24.35 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 73 LFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
+.+.+.+.|.+++.. -..++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445556654332 33455666666666777777777777665555555554455554444
No 415
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.46 E-value=18 Score=20.49 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=12.2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHH
Q 042039 162 LINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
+.-++.+.|++++|.+..+.+++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 44445555555555555555555
No 416
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.28 E-value=28 Score=22.48 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=17.5
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 153 KHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
|.|......+...+...|++++|++.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455555555566666666666655555554
No 417
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.17 E-value=89 Score=28.28 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=101.6
Q ss_pred hcCChhHHHHHHHHhhhCC-----------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHH-------hcCCCC-----
Q 042039 28 KEGFVDKAKALFLQMKGEN-----------INPDVVTYNSLIHGLCHANDWNEAKRLFFEMM-------DQGVQP----- 84 (376)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~----- 84 (376)
....+++|...|.-..... .|-.+.+...+..++..+|+.+.|-+++++.+ .....|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 4455777877777665442 13345667778888999999887776666543 211111
Q ss_pred --------chHhHHHH---HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCcHHHHHHHHHHHHhcC-
Q 042039 85 --------SVVTFNVI---MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFC-LTGKINRAEELFGSMESMG- 151 (376)
Q Consensus 85 --------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~- 151 (376)
|...|..+ +..+.+.|-+..|.++.+-+.+.+..-|+.....++..|+ +..+++-.+++++.....+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 22333333 4456778999999999999998865557777777888775 5567887888877775443
Q ss_pred --CCCChhhHHHHHHHHHccCc---HHHHHHHHHHHHHC
Q 042039 152 --CKHDDVSYNILINGYCKNKE---VEEALSLYREMVSK 185 (376)
Q Consensus 152 --~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 185 (376)
.-|+-..-..++..|.+... -+.|...+.++...
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 23444444456666666555 45666677666653
No 418
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=68.96 E-value=1e+02 Score=31.00 Aligned_cols=125 Identities=19% Similarity=0.142 Sum_probs=66.5
Q ss_pred HHHhCCChHHHHH------HHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH-------HhcCCCCChhhHHH
Q 042039 95 ELCKNGKMDEASR------LLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSM-------ESMGCKHDDVSYNI 161 (376)
Q Consensus 95 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 161 (376)
.....|.+.++.+ ++...-..-.++....|..+...+.+.++.++|...-.+. .....+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444455555555 4442222212334556677777777778777777665443 22222334445556
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHC-----C--CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHh
Q 042039 162 LINGYCKNKEVEEALSLYREMVSK-----G--IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQR 219 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (376)
+...+...++...|...+.+.... | .+|...++..+-..+...++.+.|.++++.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 665555666666666666665542 1 223333444444444455666666666666544
No 419
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.75 E-value=74 Score=27.17 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=25.8
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMM 78 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 78 (376)
|-.+.++..+...+..+|+.+.|.+++++.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5577888888899999999988888888764
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.58 E-value=27 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=27.5
Q ss_pred CCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 82 VQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
..|++.++..++.++...|+.++|.+...++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678888888888888888888888888888765
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.24 E-value=80 Score=27.36 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=45.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHC------CCC-CCHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 042039 159 YNILINGYCKNKEVEEALSLYREMVSK------GIK-PTVVTYNTLFLGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (376)
...|++.++-.||+..|+++++.+.-. .++ -...++-.++-+|...+++.+|.+.|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888999999999998865321 122 235677788889999999999999998764
No 422
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=68.05 E-value=17 Score=21.72 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=27.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLC 62 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 62 (376)
.|+...++.+++..++..-.+.++..+.+..+.| .-+..+|..-++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3455566666666666666666666666666665 344555544444443
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.41 E-value=15 Score=29.90 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=23.6
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHH
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTY 194 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 194 (376)
.|+..|....+.||+++|+.+++++.+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3446667777777777777777777776655444444
No 424
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=67.35 E-value=53 Score=27.48 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=39.4
Q ss_pred ChHHHHHHHhcccccCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 042039 276 RLEIALELFRSLPRRVLVADV----VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF 341 (376)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (376)
-.+++..++..++.. -|+. ..|-.++......|.++..+.+|++++..|..|-...-..++..+
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 455677777766554 2343 344555566666777777777777777777776655555554443
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.81 E-value=41 Score=23.44 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHH
Q 042039 139 RAEELFGSMESMGCKH-DDVSYNILINGYCKNKEVEEALSLYRE 181 (376)
Q Consensus 139 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (376)
.+.++|..|...++.. .+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4555555554443322 223344445555555555555555543
No 426
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.66 E-value=1.4e+02 Score=29.76 Aligned_cols=124 Identities=12% Similarity=0.088 Sum_probs=63.6
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHH
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMVSKGIKPT----VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFI 233 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 233 (376)
.|...++.+-+.+-.+.+.++-..+++. .+++ ..+++.+.+.....|.+.+|...+-.-... .........++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 3556677777777778877777777764 2322 344556666666777776665544321110 11112344555
Q ss_pred HHHHhCCCH------------HHHHH-HHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 042039 234 DGLCKNGYI------------VEAVE-LFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELF 284 (376)
Q Consensus 234 ~~~~~~~~~------------~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (376)
..+..+|.+ ++... +++...+...-.....|..|-..+...+++.+|-.+.
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 555555543 23333 3333333322222334444444456666766665443
No 427
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.88 E-value=13 Score=17.59 Aligned_cols=15 Identities=7% Similarity=0.288 Sum_probs=7.4
Q ss_pred ChhHHHHHHHHhhhC
Q 042039 31 FVDKAKALFLQMKGE 45 (376)
Q Consensus 31 ~~~~a~~~~~~~~~~ 45 (376)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344555555555443
No 428
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=65.63 E-value=24 Score=28.87 Aligned_cols=78 Identities=9% Similarity=0.092 Sum_probs=53.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHH-HHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNS-LIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV 91 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (376)
..|+..|...+....+.|.+.+.-.+|.+..+.+ |.|+..|.. -..-+...++++.+..+|.+.++.+.. ++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHHH
Confidence 4567778888777777788888888888888775 667766643 223345567888888888887776544 4445544
Q ss_pred H
Q 042039 92 I 92 (376)
Q Consensus 92 l 92 (376)
.
T Consensus 182 y 182 (435)
T COG5191 182 Y 182 (435)
T ss_pred H
Confidence 3
No 429
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.68 E-value=76 Score=25.82 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=110.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChh-------hHHHHHHHHhcCCChHHHHHHHHHHHhc---CCCC-chHhH
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVV-------TYNSLIHGLCHANDWNEAKRLFFEMMDQ---GVQP-SVVTF 89 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~ 89 (376)
-+.+...+.+++++|+..+.++...|+..+.. +...+...|...|++..--+........ -.+| .....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 45566788999999999999999998766543 4556788899998877655554443321 0111 22334
Q ss_pred HHHHHHHHh-CCChHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCCCChhhH
Q 042039 90 NVIMDELCK-NGKMDEASRLLDLMVQRDVRPN-----AFTYSTLMDGFCLTGKINRAEELFGSM----ESMGCKHDDVSY 159 (376)
Q Consensus 90 ~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~ 159 (376)
..++..+-. ...++.-+.+....++....-+ ...-..++..+.+.|.+.+|......+ ...+-+++..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 444443332 3455666666665555321111 111234677788899999988776544 333334443322
Q ss_pred HH-HHHHHHccCcHHHHHHHHHHHHHC----CCCCCHhHHHHHHHHH--HhccchHHHHHHHHHHHhc
Q 042039 160 NI-LINGYCKNKEVEEALSLYREMVSK----GIKPTVVTYNTLFLGL--FEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 160 ~~-l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 220 (376)
.. =-.+|....+..++..-+..++.. -+||....-.-++.+. +...++..|..+|-+..+.
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 22 233444455555555444443321 2344333333333332 3445667777777666553
No 430
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.64 E-value=76 Score=26.48 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=37.6
Q ss_pred HHHHhCCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 042039 94 DELCKNGKMDEASRLLDLMVQRD---VRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK 170 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (376)
+-|.+..++..|...|.+-++.. ...+...|+.-..+....|++..|+.=........ |.....|..-..++....
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLELE 167 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHHHH
Confidence 34444455555555555444321 11123344444444444455555554444444443 223333333344444444
Q ss_pred cHHHHHHHHHH
Q 042039 171 EVEEALSLYRE 181 (376)
Q Consensus 171 ~~~~a~~~~~~ 181 (376)
.+.+|....+.
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 44444444443
No 431
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=64.52 E-value=1.1e+02 Score=30.68 Aligned_cols=156 Identities=13% Similarity=-0.003 Sum_probs=96.8
Q ss_pred HHHhccchHHHHH------HHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhc-------ccCCCchHHHHHH
Q 042039 200 GLFEIHQVEHALK------LFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLG-------ILKCELDIQAYNC 266 (376)
Q Consensus 200 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ 266 (376)
.....+.+..+.+ ++......-.+.....|..+...+.+.++.++|+..-.... ..+.+-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3344455555555 55533333235566778889999999999999988765542 2222224455666
Q ss_pred HHHHHHhCCChHHHHHHHhccccc-------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc-----CC--CCcHH
Q 042039 267 LIDGLCKSGRLEIALELFRSLPRR-------VLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN-----AV--APNVI 332 (376)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~ 332 (376)
+.......++...|...+.+.... ..||...++..+-..+...++++.|.++++.+.+. |. -.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666677777777776654321 13444455555555566668999999999888653 21 12455
Q ss_pred HHHHHHHHHhhcCChhhHHHHHH
Q 042039 333 IFVTLIHGFVRINKPSKVIELLH 355 (376)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~ 355 (376)
++..+.+.+...+++..|+...+
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 67777777777777766655444
No 432
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.29 E-value=77 Score=25.78 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCCCchH-------hHHHHHHHHHhCCChHHHHHHH
Q 042039 56 SLIHGLCHANDWNEAKRLFFEMMDQGVQPSVV-------TFNVIMDELCKNGKMDEASRLL 109 (376)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 109 (376)
.+..-..+.+++++|+..+.+++..|+..+.. +...+...|...|+....-+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34555667778888888888888777655543 3344566666666665544443
No 433
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.02 E-value=26 Score=23.60 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998877
No 434
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.54 E-value=1.2e+02 Score=27.49 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=45.3
Q ss_pred HHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhh
Q 042039 268 IDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLC-NDGQMDKAHDLFLDMEEN---AVAPNVIIFVTLIHGFVR 343 (376)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 343 (376)
+..+.+.|-+..|.++-+-+......-|+.....++..|+ +..+|+-.+++++..... ...||-..-..|+..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3344566777777777666665533335555555666554 566677777776665322 234555555555555655
Q ss_pred cCC
Q 042039 344 INK 346 (376)
Q Consensus 344 ~g~ 346 (376)
...
T Consensus 429 ~~~ 431 (665)
T KOG2422|consen 429 KNE 431 (665)
T ss_pred cCC
Confidence 444
No 435
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.18 E-value=45 Score=22.37 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHH
Q 042039 29 EGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRL 108 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (376)
....++|..+.+.+...+ .....+-.+-+..+.++|++++| -........||...|..+.. .+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHHHH--HhhccHHHHHHH
Q ss_pred HHHHHhcCCCCChhhHHHHHH
Q 042039 109 LDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~ 129 (376)
+.++...| .|....|..=++
T Consensus 92 l~rla~~g-~~~~q~Fa~~~~ 111 (116)
T PF09477_consen 92 LTRLASSG-SPELQAFAAGFR 111 (116)
T ss_dssp HHHHCT-S-SHHHHHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHHHHHH
No 436
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.89 E-value=94 Score=25.98 Aligned_cols=93 Identities=9% Similarity=0.011 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCC---CCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMDQGV---QPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
|.-=+.-|.+..++..|...|.+.++... ..+...|+.-..+-...|++..++.-....+... +-....+..-..+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHH
Confidence 33344455555566666666666555421 2233445555555555566666666555555542 1123344444445
Q ss_pred HHhcCcHHHHHHHHHHH
Q 042039 131 FCLTGKINRAEELFGSM 147 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~ 147 (376)
+....+++.|..+.++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 55555555555555544
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.51 E-value=52 Score=22.89 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 314 KAHDLFLDMEENAVAP-NVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 314 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
.+.++|..|.+.|+.. ....|......+...|++++|.++|+.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7888888888776543 3566777777788888888888888753
No 438
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.45 E-value=1.5e+02 Score=28.10 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=88.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCC---chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQGVQP---SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLT 134 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (376)
+.-+.+.+.+++|+++.+..... .| -...+..++..+...|++++|-...-.|... +..-|......+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55667778888888887665432 33 2345667778888889999999988888754 455666666666666
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH---------CCC-------CCCHhHHHHHH
Q 042039 135 GKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS---------KGI-------KPTVVTYNTLF 198 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-------~~~~~~~~~l~ 198 (376)
++......++ .......++..|..++..+.. .+...-.++...... ... .-+......|+
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 6554433322 222112355677777776665 333322222221100 000 11223344577
Q ss_pred HHHHhccchHHHHHHHHHHH
Q 042039 199 LGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~ 218 (376)
..|...+++..|..++-...
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77777888888887776554
No 439
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.07 E-value=77 Score=29.26 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=51.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCC--CCChhhHHHHHHHHhcCCChH------HHHHHHHHHHhcCCCCchHhHHHH
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENI--NPDVVTYNSLIHGLCHANDWN------EAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
+|+++|..+|++.++.++++.....+. +.=...++..++...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 789999999999999999999876641 222456788888888888765 3445555443 34466666666
Q ss_pred HHHHH
Q 042039 93 MDELC 97 (376)
Q Consensus 93 ~~~~~ 97 (376)
..+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55443
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.66 E-value=12 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=9.2
Q ss_pred ChHHHHHHHHHHHhcCCCCc
Q 042039 66 DWNEAKRLFFEMMDQGVQPS 85 (376)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~ 85 (376)
.-.+|..+|.+|++.|-+||
T Consensus 110 sk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCc
Confidence 33444445555554444443
No 441
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.44 E-value=97 Score=25.31 Aligned_cols=97 Identities=10% Similarity=0.113 Sum_probs=43.1
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHh----cCCCCChhhHH-HHHHHHHhcCcHHHHHHHHHHHHhcCCCCChh---
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQ----RDVRPNAFTYS-TLMDGFCLTGKINRAEELFGSMESMGCKHDDV--- 157 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 157 (376)
..++..+..-|++.++.+.+.++..+..+ .|.+.|+.... .+.-.|....-.++.++..+.+.+.|...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44555666666666666666555544433 23333332211 12222333333455555555555554322211
Q ss_pred -hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 158 -SYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 158 -~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
+|..+ .+....++.+|-.++.+...
T Consensus 195 K~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 22211 12223455666666655544
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.14 E-value=63 Score=26.57 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=27.5
Q ss_pred HHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 282 ELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
++|+.+.+.++.|...+|..+.-.+.+.-.+...+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555556666666666666666666666666777766654
No 443
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.67 E-value=53 Score=21.76 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=20.9
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 130 GFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
.+...|++++|..+.+.. ..||...|..|.. .+.|--++...-+.++..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 344455555555544433 1344444433322 2334444444444444433
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.52 E-value=31 Score=19.01 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=13.5
Q ss_pred hcCChhHHHHHHHHhhhCCCCCChhhHHH
Q 042039 28 KEGFVDKAKALFLQMKGENINPDVVTYNS 56 (376)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 56 (376)
+.|-..++..++++|.+.|..-+...+..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 44444455555555544444444444433
No 445
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.74 E-value=1.4e+02 Score=26.47 Aligned_cols=339 Identities=10% Similarity=0.005 Sum_probs=178.8
Q ss_pred hhHHHHHHHHHhcC-ChhHHHHHHHHhhhCC--CC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 17 VTYNTIIDGLCKEG-FVDKAKALFLQMKGEN--IN-PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 17 ~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
.++..|...+.... .+..+..++.+.++.. +| -+-.....|+..+.-..++..|.+++.---.. -.+-...|..+
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~ 167 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRM 167 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHH
Confidence 45667777777766 7888898988887652 11 11223345677778888999998885332221 12222233322
Q ss_pred HH------HHHhCCChH---HHHHHHHHHHhcCCCCChh------hHHHH--HHHHHhcCcHHHHHHHHHHHHhc---CC
Q 042039 93 MD------ELCKNGKMD---EASRLLDLMVQRDVRPNAF------TYSTL--MDGFCLTGKINRAEELFGSMESM---GC 152 (376)
Q Consensus 93 ~~------~~~~~~~~~---~a~~~~~~~~~~~~~~~~~------~~~~l--~~~~~~~~~~~~a~~~~~~~~~~---~~ 152 (376)
+. ......+.. .+.....++.+. ..+|.. .|... +.-|...|+...+...++++.+. +.
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 22 222233444 444444455544 344432 12211 23345567877777777766432 11
Q ss_pred ------------CCChhhHHHHHH----H---------HHccCcHHHHHHHHHHHHHC----CCCC-CHhHH--------
Q 042039 153 ------------KHDDVSYNILIN----G---------YCKNKEVEEALSLYREMVSK----GIKP-TVVTY-------- 194 (376)
Q Consensus 153 ------------~~~~~~~~~l~~----~---------~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~-------- 194 (376)
.|++..+.-+.. + -...|-+++|.++-++++.. ...+ ....+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 122222211111 1 11244556666655555432 0111 12221
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcC-CCCC--------cchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHH-
Q 042039 195 NTLFLGLFEIHQVEHALKLFEEMQRDD-VAAD--------TSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAY- 264 (376)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 264 (376)
..++-+-.-.|++.+|++-+..|.+-- -.|. ......++..+...+-++.|+..|..+.+.-..-|...+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222233345689999998888887642 1222 122333444456678899999988887654433343333
Q ss_pred -HHHHHHHHhCCChHHHHHHHhcccccC-CCCCH-----HHHHHHHHHHHccCChhHHHHHHHHHHHcCCC-----CcHH
Q 042039 265 -NCLIDGLCKSGRLEIALELFRSLPRRV-LVADV-----VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVA-----PNVI 332 (376)
Q Consensus 265 -~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 332 (376)
..++..|.+.|+.+.-.++++.+-..+ .+.+. ..+..-+-....++++.+|..++++..+..-. ...-
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 446677888888888777777654331 11111 12222333345789999999999887753211 1112
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 333 IFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
....|...+...|+..++.+...-.
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchH
Confidence 2333445566678887777655543
No 446
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.59 E-value=98 Score=24.48 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=59.0
Q ss_pred HHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc-C-----------CCCCHHHHHHHH
Q 042039 236 LCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR-V-----------LVADVVTYNIMI 303 (376)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~ 303 (376)
|.+..+..--.++.+-....+++-+...+..++ +...|+..+|+.-++.-... | ..|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444433334444444444444444444443 45678888888888764321 1 345666666666
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 042039 304 HGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF 341 (376)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (376)
..|. .+++++|.+.++++-+.|..|.. ..+.+.+.+
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 6654 46788888888888888877543 334444444
No 447
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=56.20 E-value=1.4e+02 Score=26.18 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHH
Q 042039 229 YNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLC 307 (376)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (376)
...++.-|...|+..+|..+++++.-.-. -....+..++.+..+.|+-...+.+++..-..| ..|.+.|-.+|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhh
Confidence 45677788889999999998888653322 245677778888888888777677666655443 234444444443
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.30 E-value=1.1e+02 Score=24.68 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=15.5
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHH
Q 042039 225 DTSTYNTFIDGLCKNGYIVEAVELF 249 (376)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (376)
++.....++..+.+.+++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4556666777777777777776655
No 449
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.19 E-value=1e+02 Score=24.35 Aligned_cols=90 Identities=11% Similarity=0.124 Sum_probs=54.5
Q ss_pred hccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcc------------cCCCchHHHHHHHHHH
Q 042039 203 EIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGI------------LKCELDIQAYNCLIDG 270 (376)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~l~~~ 270 (376)
+..+.+--.++.+-....+++-+...+..++ +...||..+|...++.-.. .-..|.+.....++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 3333333334444444444444444444433 4567777777776655421 1125677777777776
Q ss_pred HHhCCChHHHHHHHhcccccCCCCC
Q 042039 271 LCKSGRLEIALELFRSLPRRVLVAD 295 (376)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (376)
|. .+++++|.+.+.++-+.|+.|.
T Consensus 249 ~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 249 CL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HH-hccHHHHHHHHHHHHHcCCCHH
Confidence 54 5789999999999888887664
No 450
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.34 E-value=1.1e+02 Score=24.29 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=18.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 57 LIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
++...-+.++++++.+.+.++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4444455555555555555555554444444444443333
No 451
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=53.87 E-value=76 Score=22.37 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=14.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC
Q 042039 126 TLMDGFCLTGKINRAEELFGSMESMG 151 (376)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 151 (376)
.++--+...|+++.|+.+.+.+.+.|
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 33444455566666666666665555
No 452
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=53.83 E-value=1.2e+02 Score=26.16 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=27.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhc--CCCCchHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042039 56 SLIHGLCHANDWNEAKRLFFEMMDQ--GVQPSVVTFNVIMDELCKNGKMDEASRLLDLMV 113 (376)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (376)
.|++.+.-.|+++...+.++.+.+. |..|....-..+.-+|.-.+++.+|.+.|-..+
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556655555555544432 222222222334445555566666666555443
No 453
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=53.46 E-value=1.3e+02 Score=24.83 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 042039 55 NSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLT 134 (376)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (376)
..++....+.++..+..+.++.+. ....-...+......|++..|++++.+..+.- . ...-+..+-..-
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~--- 170 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS--- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---
Confidence 344555666666666666665554 33334455677788999999999988876631 1 111111111111
Q ss_pred CcHHHHHH--------HHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 135 GKINRAEE--------LFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 135 ~~~~~a~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
.++++-.. .|..+.. .-++..|..+..+|.-.|+...+.+-+...
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11222222 2222222 468889999999999999877666544443
No 454
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=53.32 E-value=2.1e+02 Score=27.38 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=63.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHH---hcCCChHHHHHHHHHHHhcCCCCchHhHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGL---CHANDWNEAKRLFFEMMDQGVQPSVVTFNV 91 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (376)
+...+..||..+.+.|++++....-..|...- +.++..|..-+.-. ...+...++..+|++.+.....+ ..|..
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v--~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV--PIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc--hHHHH
Confidence 34567778888999999988877777776653 56677776655433 34467778888888887653333 33333
Q ss_pred HHHH-------HHhCCChHHHHHHHHHHHh
Q 042039 92 IMDE-------LCKNGKMDEASRLLDLMVQ 114 (376)
Q Consensus 92 l~~~-------~~~~~~~~~a~~~~~~~~~ 114 (376)
.+.. +...++++....+|.+.+.
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 3332 2334667777788877765
No 455
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.98 E-value=2.3e+02 Score=27.68 Aligned_cols=248 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh---cCCCCChhhHHHHHHHHHhcCcH--HHHHHHHHHHHhcCCCCChhhHHH--
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQ---RDVRPNAFTYSTLMDGFCLTGKI--NRAEELFGSMESMGCKHDDVSYNI-- 161 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 161 (376)
|..|+..|...|+.++|+++|.+... ....--...+..++..+.+.+.. +-..++-+-..+.........+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccc-hHHHHHHHHHHHhcCCCCCcchHH
Q 042039 162 ----------LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ-VEHALKLFEEMQRDDVAADTSTYN 230 (376)
Q Consensus 162 ----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 230 (376)
.+-.|......+-++.+++.+....-.++....+.++..|...=+ ......--++..+.+ +.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~-------~r 659 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT-------VR 659 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhh-------HH
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHc--
Q 042039 231 TFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCN-- 308 (376)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 308 (376)
..+..+....+.=....++.. .+....|....-.+.+.|+.++|+.++-..+. |...-......+..
T Consensus 660 ekl~~~l~~s~~Y~p~~~L~~------~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~-----d~~~A~~Yc~~~y~~~ 728 (877)
T KOG2063|consen 660 EKLLDFLESSDLYDPQLLLER------LNGDELYEERAILLGRLGKHEEALHIYVHELD-----DIDAAESYCLPQYESD 728 (877)
T ss_pred HHHHHHhhhhcccCcchhhhh------ccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc-----chhHHHHHHHHhccCC
Q ss_pred cCChhHHHHHHHHHHHc--CCCCcHHHHHHHHHHHhhcCChhhHHHHH
Q 042039 309 DGQMDKAHDLFLDMEEN--AVAPNVIIFVTLIHGFVRINKPSKVIELL 354 (376)
Q Consensus 309 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (376)
.++.+.-..+++..... +..+.+.....++.-+...=+..++.+.+
T Consensus 729 ~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~L 776 (877)
T KOG2063|consen 729 KTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLL 776 (877)
T ss_pred CcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhC
No 456
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.22 E-value=53 Score=22.21 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=19.4
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 60 GLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333444455555555555544444444444444444444
No 457
>PRK09462 fur ferric uptake regulator; Provisional
Probab=51.28 E-value=90 Score=22.44 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=24.8
Q ss_pred HHHHHhcC-CChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 57 LIHGLCHA-NDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 57 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
++..+... +..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 22 Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 33444433 3456667777777666555555555555555555543
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.96 E-value=1.8e+02 Score=25.96 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=73.2
Q ss_pred CCCcc-hHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHh--CCChHHHHHHHhcccccCCCCCHHHH
Q 042039 223 AADTS-TYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCK--SGRLEIALELFRSLPRRVLVADVVTY 299 (376)
Q Consensus 223 ~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~ 299 (376)
.++.. .-+.++..+.+.|-..+|...+..+.... +|+...|..+++.-.. .-+..-+..+|+.+... +-.++..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 34433 44567777888999999999999988765 6678888777765322 23477888888888755 23688888
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHH
Q 042039 300 NIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
...+..=...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 8877777788888888877777665
No 459
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=50.31 E-value=61 Score=21.94 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChH
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWN 68 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 68 (376)
.+++.+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 356666667778889999999998876677777777777777777433
No 460
>PRK09857 putative transposase; Provisional
Probab=49.91 E-value=1.5e+02 Score=24.52 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=37.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCc
Q 042039 301 IMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPD 365 (376)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 365 (376)
.++.-....++.++..++++.+.+. .++......+++.-+.+.|.-++++++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334455555556666655544 222333444566666666666677777888877777655
No 461
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=49.89 E-value=53 Score=20.82 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=28.1
Q ss_pred cccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhh
Q 042039 10 VVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKG 44 (376)
Q Consensus 10 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 44 (376)
..+.|+...||.++......+...-|..++.+...
T Consensus 10 ~~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 10 FTFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred EEeccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 45689999999999988888888888777776664
No 462
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.12 E-value=49 Score=22.65 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 56 SLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
.++..+...+.+-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445556666666665555555554444444444444
No 463
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.74 E-value=80 Score=21.18 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHhcCCC
Q 042039 20 NTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAN--DWNEAKRLFFEMMDQGVQ 83 (376)
Q Consensus 20 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 83 (376)
..++..|...|+.++|...+.++... .-.......++..+...+ .-+....++..+.+.+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45667788889999999888876422 112233344444444442 223345555555555433
No 464
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.69 E-value=37 Score=17.32 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=8.4
Q ss_pred HHHHHHHccCChhHHHHH
Q 042039 301 IMIHGLCNDGQMDKAHDL 318 (376)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~ 318 (376)
.++..+-..|++++|+++
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444455555555555
No 465
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.62 E-value=2.1e+02 Score=26.68 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=51.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcC--CCCchHhHHHHHHHHHhCCChH------HHHHHHHHHHhcCCCCChhhHHHH
Q 042039 56 SLIHGLCHANDWNEAKRLFFEMMDQG--VQPSVVTFNVIMDELCKNGKMD------EASRLLDLMVQRDVRPNAFTYSTL 127 (376)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 127 (376)
+|+.+|...|++-.+.++++.....+ -+.-...++..++...+.|.++ .+.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999998763 2333567888899999998764 3444444443 33355666655
Q ss_pred HHH
Q 042039 128 MDG 130 (376)
Q Consensus 128 ~~~ 130 (376)
..+
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 544
No 466
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.59 E-value=77 Score=20.92 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=9.5
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 042039 91 VIMDELCKNGKMDEASRLLDL 111 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~ 111 (376)
.|.-.|.+.|+.+.+.+-|+.
T Consensus 77 hLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHH
Confidence 333444444444444444443
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.46 E-value=1.1e+02 Score=22.68 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=24.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 57 LIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 344444445555666666666666555555555555555555543
No 468
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.09 E-value=1.7e+02 Score=24.85 Aligned_cols=251 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCch----Hh
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSV----VT 88 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 88 (376)
.|++.+.-.++.-+....+-++...+-..+. .+.+.+...+.+.+.+...+.+..+++.. ..|.. ..
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f~--------~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~ 142 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIFF--------PLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSI 142 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHHH--------HHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhh
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCChhhHH
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQRD------VRPNAFTYSTLMDGFCLTG--KINRAEELFGSMESMGCKHDDVSYN 160 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (376)
...++..+.+.+++..+...++.-+..- .+|.......+-.++.-.| +++.|.-+|+.+.. .|....-.
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~ 219 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSH 219 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHH
Q ss_pred HHHHHHHc--------cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHH
Q 042039 161 ILINGYCK--------NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTF 232 (376)
Q Consensus 161 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (376)
....+|-+ .|+....-+.-.+....-.+|-...|..++.+|.+...-+ .+.+..+....
T Consensus 220 ~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~e-Lr~lVk~~~~r------------ 286 (422)
T KOG2582|consen 220 IHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTE-LRTLVKKHSER------------ 286 (422)
T ss_pred HHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHH-HHHHHHHHHHH------------
Q ss_pred HHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHH----HHHHHhCCChHHHHHHHhcccccC
Q 042039 233 IDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCL----IDGLCKSGRLEIALELFRSLPRRV 291 (376)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~ 291 (376)
+.+-++..-+......+....+.--..+|..+ +.-..+.+..++|.+..-+|.+.|
T Consensus 287 ---F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 ---FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred ---HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 469
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=47.81 E-value=72 Score=20.39 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=26.0
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 37 ALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
++|+-....|+..|+..|..++..+.-.=.++...++++.+..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666665555555555555555543
No 470
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.66 E-value=74 Score=20.44 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=6.5
Q ss_pred CChHHHHHHHHHHH
Q 042039 100 GKMDEASRLLDLMV 113 (376)
Q Consensus 100 ~~~~~a~~~~~~~~ 113 (376)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 471
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.48 E-value=74 Score=20.42 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHhc
Q 042039 240 GYIVEAVELFRTLG 253 (376)
Q Consensus 240 ~~~~~a~~~~~~~~ 253 (376)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 472
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.45 E-value=37 Score=16.90 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHH
Q 042039 172 VEEALSLYREMVSKGIKPTVVTYN 195 (376)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~ 195 (376)
++.|..+|++... +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3445555555544 234444443
No 473
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.38 E-value=1.8e+02 Score=25.22 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=41.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC--CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGE--NINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
-|++...-.|+++...+.++.+.+. |..|...+-..++-+|.-.|++.+|.+.|-..+.
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666688877777888777654 3333322225677888889999999999987754
No 474
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=47.25 E-value=2.5e+02 Score=26.34 Aligned_cols=90 Identities=14% Similarity=0.055 Sum_probs=38.6
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC-CchHHHHHHHHHHHHh-
Q 042039 196 TLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC-ELDIQAYNCLIDGLCK- 273 (376)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~- 273 (376)
.....+.-.|+++.|++.+... .....+...+. ++ +...|-.......-..+..... .|.+--+..++..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~A-Ia--L~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFA-IA--LAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHH-HH--HHHTT------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHH-HH--HHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHH
Confidence 3455667789999999988771 11122222222 22 2222221111111122221110 1122456677777765
Q ss_pred --CCChHHHHHHHhccccc
Q 042039 274 --SGRLEIALELFRSLPRR 290 (376)
Q Consensus 274 --~~~~~~a~~~~~~~~~~ 290 (376)
..+..+|.+++-.+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 46888999999877654
No 475
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.98 E-value=57 Score=22.32 Aligned_cols=47 Identities=13% Similarity=0.030 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC
Q 042039 20 NTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAND 66 (376)
Q Consensus 20 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 66 (376)
..+++.+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 45667777777799999999999988877777776666777766663
No 476
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=46.95 E-value=2e+02 Score=25.20 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=45.8
Q ss_pred CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH--------HHccCcHHHHHHHHHHHHHCCC
Q 042039 116 DVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILING--------YCKNKEVEEALSLYREMVSKGI 187 (376)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~ 187 (376)
.+.|+..+.+-+...++..-..+-...+|+-..+.+ .|-...+..++-. -.+....++++++++.|...--
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 356777777767777766666777777777776654 2222222222211 1233445677777776654322
Q ss_pred CCCHhHHHHHHHHHH
Q 042039 188 KPTVVTYNTLFLGLF 202 (376)
Q Consensus 188 ~~~~~~~~~l~~~~~ 202 (376)
..|..-+..+...|+
T Consensus 257 ~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 257 VEDVPDFFSLAQYYS 271 (669)
T ss_pred cccchhHHHHHHHHh
Confidence 224444455554443
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.62 E-value=63 Score=19.35 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 042039 87 VTFNVIMDELCKNGKMDEASRLLDLMVQRD 116 (376)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (376)
..++.++...++..-.+.++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444443
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=46.01 E-value=1e+02 Score=21.52 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCChhhHHHHHH
Q 042039 313 DKAHDLFLDMEENAVAPN-VIIFVTLIHGFVRINKPSKVIELLH 355 (376)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (376)
++..++|..|..+++-.. ...|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446778888887766543 4456666677778888888888875
No 479
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.98 E-value=19 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=18.4
Q ss_pred hcCChhhHHHHHHHHHhCCCCCch
Q 042039 343 RINKPSKVIELLHKMKEKKVMPDA 366 (376)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~p~~ 366 (376)
.-|.-..|-.+|++|.+.|-.||.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc
Confidence 346667788888888888888875
No 480
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.36 E-value=2.5e+02 Score=25.93 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 295 DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
+......++..|.+.|-.+.|.++.+.+-..-. ...-|...+..+.+.|+...+..+.+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445556677777777777777777766543311 122344455556677777666666655554
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.52 E-value=1.5e+02 Score=23.20 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=44.6
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC---chHhH--HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQP---SVVTF--NVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTY 124 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (376)
...-++.|+--|.-...+.+|-+.|.. ..|+.| +...+ ..-++.....|+.++|.+...++...-+..|...+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 334444454444444444555555433 223332 22222 23444556667777776666665433223232222
Q ss_pred HHHHH----HHHhcCcHHHHHHHHHHHH
Q 042039 125 STLMD----GFCLTGKINRAEELFGSME 148 (376)
Q Consensus 125 ~~l~~----~~~~~~~~~~a~~~~~~~~ 148 (376)
..+.. -..+.|..++|+++.+.-.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22211 1345566666666665543
No 482
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.68 E-value=69 Score=18.93 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=23.3
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH-----hhcCChhhHHHH
Q 042039 306 LCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF-----VRINKPSKVIEL 353 (376)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~ 353 (376)
+...|++=+|.++++.+=.....+....+..+|... .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 344566666666666654322223444455444322 345666666554
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.59 E-value=1.3e+02 Score=22.24 Aligned_cols=58 Identities=16% Similarity=0.073 Sum_probs=32.6
Q ss_pred HhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 042039 78 MDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK 136 (376)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (376)
...|++.+.. -..++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3445554333 233444444455666777777777776655565555555555555553
No 484
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=42.85 E-value=2.3e+02 Score=24.69 Aligned_cols=187 Identities=10% Similarity=0.041 Sum_probs=90.0
Q ss_pred CCChhhHHHHHHHHH----hcCChhHHHHHHHHh---hhCCCC-----CChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 13 KPNTVTYNTIIDGLC----KEGFVDKAKALFLQM---KGENIN-----PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~---~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
.|.-...+++++-+. +.=.-++...++.+. ..++.. .+..+...++.. ..||...|+..++.+...
T Consensus 142 NPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~--s~GD~R~aLN~LE~~~~~ 219 (436)
T COG2256 142 NPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL--SNGDARRALNLLELAALS 219 (436)
T ss_pred CCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHh--cCchHHHHHHHHHHHHHh
Confidence 455556666665442 222334444555542 223333 234444444432 468888888887777654
Q ss_pred CCCCch-HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCcHHHHHHHHHHHHhcCCCCCh
Q 042039 81 GVQPSV-VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL---TGKINRAEELFGSMESMGCKHDD 156 (376)
Q Consensus 81 ~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~ 156 (376)
. +++. .+ .+...+++.+-... ...+-..+..++.++.+ ..+.+.|+-++.+|.+.|..|..
T Consensus 220 ~-~~~~~~~-------------~~~l~~~l~~~~~~-~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~y 284 (436)
T COG2256 220 A-EPDEVLI-------------LELLEEILQRRSAR-FDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLY 284 (436)
T ss_pred c-CCCcccC-------------HHHHHHHHhhhhhc-cCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHH
Confidence 2 2221 11 12222233222222 23344555556666644 35777778888888777754544
Q ss_pred hhHHHHHHHHHccCc-----HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHH
Q 042039 157 VSYNILINGYCKNKE-----VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEE 216 (376)
Q Consensus 157 ~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (376)
..-..++-++-.-|. ..-|...++.....|.+-........+-.++....-..+...++.
T Consensus 285 iARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LAqavvyLA~aPKSNavY~A~~~ 349 (436)
T COG2256 285 IARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALAQAVVYLALAPKSNAVYTAINA 349 (436)
T ss_pred HHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 444444444444332 233444555555555544444444444334444444444444433
No 485
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.09 E-value=2.1e+02 Score=24.17 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 124 YSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILIN 164 (376)
Q Consensus 124 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (376)
|..+++.....|.++.++.+|++++..|..|-...-..++.
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~d 183 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVD 183 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 44444555555555555555555555554443333333333
No 486
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=42.04 E-value=57 Score=20.11 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=23.8
Q ss_pred HccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC
Q 042039 307 CNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRIN 345 (376)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 345 (376)
...++.+.+.+++++..+.|..|.......+.-+..+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346777777777777777666655555555555554444
No 487
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=41.82 E-value=3.3e+02 Score=26.25 Aligned_cols=135 Identities=10% Similarity=0.115 Sum_probs=77.4
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH---HhCCChHHHHHHHHHHHhcCCCCChhhH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL---CKNGKMDEASRLLDLMVQRDVRPNAFTY 124 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (376)
.-+...+..|+..+...|++++....-..|... .+.++..|...+... ...++..++...|++.+..-.. +..|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~--v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNS--VPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccccc--chHH
Confidence 445667788999999999988877777777665 233555665555433 3346777888888887765333 3334
Q ss_pred HHHHHHH-------HhcCcHHHHHHHHHHHHhc-CCCC--ChhhHHHH---HHHHHccCcHHHHHHHHHHHHHC
Q 042039 125 STLMDGF-------CLTGKINRAEELFGSMESM-GCKH--DDVSYNIL---INGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 125 ~~l~~~~-------~~~~~~~~a~~~~~~~~~~-~~~~--~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
...+..+ ...++++....+|.++... |... ....|..+ -..|...-..++.+.++..-+..
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 3333332 3446778888888877543 2111 11222222 23333344445566666555543
No 488
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.72 E-value=1.1e+02 Score=24.02 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=23.8
Q ss_pred cCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 63 HANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
+.++.+.+.+++.+....-+ .....|..+...--+.|+++.|.+.|++.++.
T Consensus 7 ~~~D~~aaaely~qal~lap-~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAP-EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCc-hhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34444555555555444311 13334444444444455555555555555443
No 489
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.41 E-value=93 Score=24.49 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
..+.++.+.+.+++.++...- +.....|..+...-.+.|+++.|.+.|++.++.
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 445667777777777776653 445566777777777777777777777777764
No 490
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.39 E-value=54 Score=17.05 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=13.6
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHH
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMV 183 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (376)
+|..|+......+++++|..=|...+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 491
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.25 E-value=1.7e+02 Score=22.91 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=53.0
Q ss_pred CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC---Ccch--HHHHHHHHHhCCCHHHHHHHHHHhcccCCCchH
Q 042039 187 IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA---DTST--YNTFIDGLCKNGYIVEAVELFRTLGILKCELDI 261 (376)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 261 (376)
+.+...-++.|+--|.-...+.+|.+.|..-. ++.+ +... -..-+......|+.+.|++....+...-...|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 44555556666666665555555555554332 2232 1222 233455667788888888887776543333343
Q ss_pred HHHHHHHH----HHHhCCChHHHHHHHhc
Q 042039 262 QAYNCLID----GLCKSGRLEIALELFRS 286 (376)
Q Consensus 262 ~~~~~l~~----~~~~~~~~~~a~~~~~~ 286 (376)
..+..+.. -..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33322221 23566777777777665
No 492
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.96 E-value=2.2e+02 Score=23.92 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=9.9
Q ss_pred HHHhcCcHHHHHHHHHHHHh
Q 042039 130 GFCLTGKINRAEELFGSMES 149 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~ 149 (376)
+..+.|+..+|.+.++++.+
T Consensus 284 CARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhh
Confidence 33344555555555555443
No 493
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.64 E-value=2.2e+02 Score=23.90 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=73.5
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHh----cCCCCC
Q 042039 46 NINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ-GVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQ----RDVRPN 120 (376)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 120 (376)
.+..|...++.+... +..++++-.+..+...+. |-.--...+.....-|++.|+.+.|.+.+....+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 345566666665543 223444444444444443 2222345677777888899998888887766554 455666
Q ss_pred hhhHHHHH-HHHHhcCcHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 121 AFTYSTLM-DGFCLTGKINRAEELFGSMESMGCKHD----DVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 121 ~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
+..+..-+ -.|....-..+-.+..+.+.+.|...+ ..+|..+ .+....++.+|-.+|-+....
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 54443322 233333333444444444445443222 2234332 234456788888888877654
No 494
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.60 E-value=2.2e+02 Score=23.89 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 228 TYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
.+...+..|++-||.+.|.+.++..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4455556666666666666655543
No 495
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.41 E-value=1.7e+02 Score=22.49 Aligned_cols=28 Identities=14% Similarity=0.008 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGE 45 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 45 (376)
..+.++..|.-.|+++.|-+.|--+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3445555666666666666666665544
No 496
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=39.85 E-value=1.3e+02 Score=21.18 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=10.3
Q ss_pred HHHHhccchHHHHHHHHHHHhcC
Q 042039 199 LGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
--+...|+++.|.++.+.+++.|
T Consensus 56 vW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 56 VWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhhhcccCHHHHHHHHHHHHHcC
Confidence 33344444444444444444443
No 497
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.67 E-value=3.4e+02 Score=25.85 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 173 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
+--.++++.+.+.-.+....-|..+.+++.-..+.+.+.++++++.+.
T Consensus 192 efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 192 EFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 334444444444211212223566778888899999999999998874
No 498
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=39.38 E-value=4e+02 Score=26.54 Aligned_cols=281 Identities=14% Similarity=0.116 Sum_probs=139.5
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCchH--------------------hHH
Q 042039 32 VDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV-QPSVV--------------------TFN 90 (376)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--------------------~~~ 90 (376)
+++|+.-|+.+... +..+--|..-+..|.+.|++++-++.+.-..++-. .|-.. ++.
T Consensus 535 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (932)
T PRK13184 535 FTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV 612 (932)
T ss_pred HHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666543 22334455556677888899988888887776522 22211 111
Q ss_pred HHHHHHHh---CCChHHHHHHHHHHHhcCCCCChh--------hHH----HHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 042039 91 VIMDELCK---NGKMDEASRLLDLMVQRDVRPNAF--------TYS----TLMDGFCLTGKINRAEELFGSMESMGCKHD 155 (376)
Q Consensus 91 ~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~--------~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (376)
.++-+... .-...+-.++++.+..+ ..|... ++. .+.-+| =.|..--..++|+++.+. ++
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~ 687 (932)
T PRK13184 613 FMLLALWIAPEKISSREEEKFLEILYHK-QQATLFCQLDKTPLQFRSSKMELFLSF-WSGFTPFLPELFQRAWDL---RD 687 (932)
T ss_pred HHHHHHHhCcccccchHHHHHHHHHHhh-ccCCceeeccCchhhhhhhhHHHHHHH-HhcCchhhHHHHHHHhhc---cc
Confidence 11111111 11122334455555443 122221 111 111111 123334445556666553 34
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHHC--CCCC--C--------HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCC
Q 042039 156 DVSYNILINGYCKNKEVEEALSLYREMVSK--GIKP--T--------VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVA 223 (376)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (376)
-.+.....-+.+..|.++-+.+....+.+. .... + ...|..-+.+.....+++++.+.+... +
T Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 762 (932)
T PRK13184 688 YRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----D 762 (932)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----C
Confidence 455555666667888888877777666542 0111 1 111333345555555666666544332 2
Q ss_pred CCc--chHHHHHHHHHhCCCHHHHHHHHHHhcccCCCc--hHHHHHHHHHHHHhCCChHHHHHHHhcccccC-CCCCHHH
Q 042039 224 ADT--STYNTFIDGLCKNGYIVEAVELFRTLGILKCEL--DIQAYNCLIDGLCKSGRLEIALELFRSLPRRV-LVADVVT 298 (376)
Q Consensus 224 ~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 298 (376)
|.. ..+..++.-....++.+.-..+.+.+.....+. ........+.+|.-..++++|-+++....... .......
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (932)
T PRK13184 763 PTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEA 842 (932)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchH
Confidence 211 122333333333444444444444433222111 12334556778888999999999997654332 2223344
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 299 YNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
+...+..++-.++-+-|...|....+
T Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 843 FVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHHhhccc
Confidence 55555555667777777777777664
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.18 E-value=1.4e+02 Score=21.38 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=29.8
Q ss_pred HhcCCCCchHhHHHHHHHHHhC-CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 78 MDQGVQPSVVTFNVIMDELCKN-GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 9 KKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445553332 22333444433 356677777777776665555555555555555544
No 500
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.55 E-value=1.8e+02 Score=24.17 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=32.6
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHhccchHHHHHHHHHHHhcC
Q 042039 153 KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNT-LFLGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
+.|+..|...+....+.+.+.+.-.++.++... .|.+...|.. ...-+...++++.+..+|...++.+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 344555555555445555555555555555554 2223333322 1222334455555555555555543
Done!