Query 042039
Match_columns 376
No_of_seqs 758 out of 1463
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 23:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.3E-35 1.8E-39 261.6 35.8 347 10-367 194-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-34 5.6E-39 258.4 37.3 248 120-373 304-557 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.1E-31 1.1E-35 224.4 40.8 342 14-366 31-372 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-30 1.1E-34 218.2 39.0 330 22-360 5-334 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.8E-31 2E-35 226.3 22.6 188 17-204 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-30 5.1E-35 223.8 24.0 206 33-238 7-222 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 7.2E-28 2.4E-32 208.0 35.6 336 13-357 23-406 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 1.3E-26 4.6E-31 200.0 36.0 325 33-368 9-364 (450)
9 2gw1_A Mitochondrial precursor 100.0 7.4E-27 2.5E-31 205.0 31.2 342 13-361 36-479 (514)
10 2gw1_A Mitochondrial precursor 100.0 2.1E-26 7E-31 202.2 32.2 339 15-361 5-445 (514)
11 3ieg_A DNAJ homolog subfamily 100.0 1.6E-25 5.4E-30 187.3 35.9 319 15-341 2-350 (359)
12 3fp2_A TPR repeat-containing p 100.0 6.9E-25 2.4E-29 193.6 34.5 336 16-361 25-492 (537)
13 3ieg_A DNAJ homolog subfamily 100.0 3.8E-24 1.3E-28 178.9 36.9 309 50-368 2-341 (359)
14 3hym_B Cell division cycle pro 99.9 6.1E-24 2.1E-28 175.6 33.4 288 12-306 18-314 (330)
15 3hym_B Cell division cycle pro 99.9 3.7E-24 1.3E-28 177.0 30.2 294 48-348 19-322 (330)
16 1fch_A Peroxisomal targeting s 99.9 1.2E-23 4E-28 176.7 24.8 313 29-357 14-356 (368)
17 1fch_A Peroxisomal targeting s 99.9 4.9E-23 1.7E-27 172.9 25.2 292 25-323 34-357 (368)
18 3fp2_A TPR repeat-containing p 99.9 1.1E-21 3.9E-26 173.0 32.4 307 13-326 56-492 (537)
19 2xm6_A Protein corresponding t 99.9 5.8E-20 2E-24 160.0 41.6 323 15-361 38-433 (490)
20 2xm6_A Protein corresponding t 99.9 1E-19 3.6E-24 158.4 42.8 302 32-360 23-360 (490)
21 3cv0_A Peroxisome targeting si 99.9 6.4E-22 2.2E-26 163.2 27.3 268 15-288 20-313 (327)
22 4eqf_A PEX5-related protein; a 99.9 2E-22 6.8E-27 169.0 24.5 266 51-321 65-352 (365)
23 4eqf_A PEX5-related protein; a 99.9 3.3E-23 1.1E-27 173.8 19.6 265 85-356 64-352 (365)
24 3cv0_A Peroxisome targeting si 99.9 9.2E-22 3.1E-26 162.3 24.7 280 51-358 21-313 (327)
25 4g1t_A Interferon-induced prot 99.9 1.3E-20 4.3E-25 163.7 28.5 350 14-368 49-468 (472)
26 3mkr_A Coatomer subunit epsilo 99.9 3.1E-20 1.1E-24 149.6 25.6 253 23-290 6-264 (291)
27 3mkr_A Coatomer subunit epsilo 99.9 3.2E-20 1.1E-24 149.6 24.1 275 58-352 6-286 (291)
28 2ooe_A Cleavage stimulation fa 99.9 2.7E-18 9.2E-23 151.0 37.4 340 14-361 11-455 (530)
29 1b89_A Protein (clathrin heavy 99.9 7.8E-21 2.7E-25 156.5 15.6 268 14-319 30-305 (449)
30 2ooe_A Cleavage stimulation fa 99.8 2.7E-17 9.1E-22 144.7 35.7 342 13-360 43-492 (530)
31 1b89_A Protein (clathrin heavy 99.8 2.4E-20 8.3E-25 153.6 14.9 282 28-353 15-304 (449)
32 2pl2_A Hypothetical conserved 99.8 4.9E-19 1.7E-23 136.6 21.2 210 13-252 2-211 (217)
33 3uq3_A Heat shock protein STI1 99.8 8.5E-19 2.9E-23 139.4 23.3 226 16-255 5-236 (258)
34 2pl2_A Hypothetical conserved 99.8 6.3E-19 2.2E-23 135.9 21.5 200 84-289 3-213 (217)
35 3uq3_A Heat shock protein STI1 99.8 1.2E-18 4.2E-23 138.4 23.5 223 88-324 7-235 (258)
36 3u4t_A TPR repeat-containing p 99.8 3.4E-18 1.2E-22 137.1 25.4 250 15-269 2-263 (272)
37 4g1t_A Interferon-induced prot 99.8 2.2E-17 7.4E-22 143.3 32.3 308 48-360 48-401 (472)
38 3u4t_A TPR repeat-containing p 99.8 7.6E-18 2.6E-22 135.0 25.2 235 122-360 4-250 (272)
39 2h6f_A Protein farnesyltransfe 99.8 5.5E-18 1.9E-22 141.0 24.6 249 16-272 97-364 (382)
40 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.9E-18 3.4E-22 134.6 21.9 247 63-319 17-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.8 4.8E-18 1.7E-22 145.7 21.1 314 21-364 8-391 (452)
42 2h6f_A Protein farnesyltransfe 99.8 2.4E-17 8.2E-22 137.2 24.3 248 86-342 97-364 (382)
43 2q7f_A YRRB protein; TPR, prot 99.8 8.1E-18 2.8E-22 132.4 20.0 203 14-221 21-223 (243)
44 1ouv_A Conserved hypothetical 99.8 2.8E-16 9.7E-21 125.9 29.2 224 15-256 5-252 (273)
45 3e4b_A ALGK; tetratricopeptide 99.8 5.5E-17 1.9E-21 139.1 26.2 307 31-360 89-421 (452)
46 1ouv_A Conserved hypothetical 99.8 3E-16 1E-20 125.7 29.0 223 85-325 5-251 (273)
47 2ho1_A Type 4 fimbrial biogene 99.8 1.2E-16 4E-21 126.5 25.6 200 52-255 38-238 (252)
48 3sf4_A G-protein-signaling mod 99.8 1.1E-17 3.9E-22 142.0 19.0 302 14-347 7-363 (406)
49 1xnf_A Lipoprotein NLPI; TPR, 99.8 1E-17 3.5E-22 134.4 17.7 249 26-284 15-269 (275)
50 2vq2_A PILW, putative fimbrial 99.8 2.4E-16 8.2E-21 122.4 24.9 203 15-220 7-211 (225)
51 2q7f_A YRRB protein; TPR, prot 99.8 3.7E-17 1.3E-21 128.7 19.9 202 50-256 22-223 (243)
52 1xi4_A Clathrin heavy chain; a 99.8 3E-15 1E-19 137.9 34.4 296 14-358 983-1307(1630)
53 3sf4_A G-protein-signaling mod 99.8 6.5E-18 2.2E-22 143.5 16.3 266 16-312 47-363 (406)
54 2ho1_A Type 4 fimbrial biogene 99.8 5.2E-16 1.8E-20 122.8 25.5 200 17-220 38-238 (252)
55 1xi4_A Clathrin heavy chain; a 99.8 5.9E-15 2E-19 136.1 34.9 290 16-345 1105-1415(1630)
56 2vq2_A PILW, putative fimbrial 99.8 3.6E-16 1.2E-20 121.3 23.6 211 157-372 9-221 (225)
57 4a1s_A PINS, partner of inscut 99.8 3.6E-17 1.2E-21 139.3 18.4 236 51-287 48-329 (411)
58 4a1s_A PINS, partner of inscut 99.8 5.2E-17 1.8E-21 138.3 18.6 270 88-358 50-370 (411)
59 3vtx_A MAMA; tetratricopeptide 99.8 4.9E-16 1.7E-20 116.6 21.2 167 15-185 4-170 (184)
60 3ulq_A Response regulator aspa 99.7 4.7E-16 1.6E-20 131.0 23.1 296 26-323 22-366 (383)
61 3ro2_A PINS homolog, G-protein 99.7 9.7E-17 3.3E-21 132.6 17.7 281 52-360 6-332 (338)
62 3spa_A Mtrpol, DNA-directed RN 99.7 4.7E-18 1.6E-22 151.5 9.2 150 16-170 127-286 (1134)
63 3ro2_A PINS homolog, G-protein 99.7 1.8E-16 6.1E-21 131.0 18.1 278 16-325 5-332 (338)
64 3ulq_A Response regulator aspa 99.7 9.9E-16 3.4E-20 129.0 22.9 298 60-359 21-367 (383)
65 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5E-22 148.4 10.5 114 227-340 128-245 (1134)
66 4abn_A Tetratricopeptide repea 99.7 8.6E-16 2.9E-20 132.6 21.0 217 66-289 83-320 (474)
67 2ond_A Cleavage stimulation fa 99.7 1E-14 3.5E-19 118.9 25.7 234 16-255 8-270 (308)
68 2ond_A Cleavage stimulation fa 99.7 1.6E-14 5.4E-19 117.7 26.3 234 86-325 8-270 (308)
69 4abn_A Tetratricopeptide repea 99.7 2.3E-15 7.8E-20 129.9 21.4 216 101-322 83-318 (474)
70 3vtx_A MAMA; tetratricopeptide 99.7 1.1E-14 3.7E-19 109.2 21.8 167 50-220 4-170 (184)
71 3nf1_A KLC 1, kinesin light ch 99.7 1.9E-16 6.3E-21 129.5 12.3 251 10-289 21-306 (311)
72 3q15_A PSP28, response regulat 99.7 3.1E-14 1E-18 119.7 25.0 310 12-324 6-364 (378)
73 3q15_A PSP28, response regulat 99.7 2.1E-14 7.2E-19 120.7 22.4 309 48-359 7-364 (378)
74 3nf1_A KLC 1, kinesin light ch 99.7 7.6E-16 2.6E-20 125.8 12.6 135 50-184 26-181 (311)
75 4gyw_A UDP-N-acetylglucosamine 99.6 9.8E-15 3.3E-19 131.0 18.9 167 14-184 7-173 (723)
76 1hz4_A MALT regulatory protein 99.6 5.9E-13 2E-17 111.7 28.0 302 52-361 15-350 (373)
77 1hz4_A MALT regulatory protein 99.6 5.7E-13 2E-17 111.7 27.3 300 18-325 16-349 (373)
78 3as5_A MAMA; tetratricopeptide 99.6 8.5E-14 2.9E-18 104.3 19.7 166 16-185 8-173 (186)
79 4i17_A Hypothetical protein; T 99.6 1.1E-13 3.8E-18 107.6 21.0 210 13-234 4-222 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.6 7E-14 2.4E-18 125.5 20.4 168 48-219 6-173 (723)
81 4i17_A Hypothetical protein; T 99.6 2.7E-13 9.3E-18 105.4 21.4 210 48-270 4-223 (228)
82 4e6h_A MRNA 3'-END-processing 99.6 2.4E-11 8E-16 108.0 34.9 344 14-361 64-534 (679)
83 3as5_A MAMA; tetratricopeptide 99.6 6E-13 2.1E-17 99.6 19.2 166 51-220 8-173 (186)
84 4e6h_A MRNA 3'-END-processing 99.6 2E-11 6.9E-16 108.5 31.6 220 139-361 327-571 (679)
85 1qqe_A Vesicular transport pro 99.5 5.7E-12 2E-16 101.7 23.4 209 66-289 32-268 (292)
86 3edt_B KLC 2, kinesin light ch 99.5 1.9E-13 6.4E-18 109.9 14.0 229 26-255 11-281 (283)
87 3edt_B KLC 2, kinesin light ch 99.5 1.1E-12 3.7E-17 105.4 17.7 159 62-220 12-198 (283)
88 3qky_A Outer membrane assembly 99.5 4E-12 1.4E-16 100.9 20.2 103 13-116 12-127 (261)
89 1qqe_A Vesicular transport pro 99.5 6.1E-12 2.1E-16 101.5 19.8 210 31-255 32-269 (292)
90 3urz_A Uncharacterized protein 99.5 2.8E-12 9.5E-17 97.9 16.4 115 16-133 4-134 (208)
91 3qky_A Outer membrane assembly 99.5 7.5E-12 2.6E-16 99.3 19.3 171 48-220 12-224 (261)
92 3mv2_B Coatomer subunit epsilo 99.5 9.6E-11 3.3E-15 92.8 24.1 178 105-289 85-281 (310)
93 2pzi_A Probable serine/threoni 99.4 2.4E-12 8.2E-17 116.1 15.7 173 62-240 402-582 (681)
94 3urz_A Uncharacterized protein 99.4 1.6E-11 5.4E-16 93.7 17.6 58 162-220 60-117 (208)
95 4ga2_A E3 SUMO-protein ligase 99.4 1.1E-12 3.7E-17 94.4 10.3 143 24-170 5-148 (150)
96 3dra_A Protein farnesyltransfe 99.4 5.8E-10 2E-14 89.2 27.0 223 27-254 43-286 (306)
97 2pzi_A Probable serine/threoni 99.4 9.6E-12 3.3E-16 112.2 18.6 186 97-288 402-603 (681)
98 3mv2_B Coatomer subunit epsilo 99.4 1.3E-10 4.5E-15 92.0 21.8 244 58-325 20-282 (310)
99 3rjv_A Putative SEL1 repeat pr 99.4 8E-11 2.7E-15 90.0 19.7 175 140-326 5-198 (212)
100 3dra_A Protein farnesyltransfe 99.4 1.9E-09 6.6E-14 86.2 28.0 217 103-324 50-286 (306)
101 2fo7_A Synthetic consensus TPR 99.4 3.4E-11 1.2E-15 84.8 16.2 129 18-149 3-131 (136)
102 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.1E-10 3.8E-15 90.2 19.9 188 15-221 3-214 (225)
103 4ga2_A E3 SUMO-protein ligase 99.4 4E-12 1.4E-16 91.4 10.7 146 197-346 3-149 (150)
104 2r5s_A Uncharacterized protein 99.4 9.9E-12 3.4E-16 92.2 13.0 164 17-184 7-172 (176)
105 3rjv_A Putative SEL1 repeat pr 99.4 1.1E-10 3.7E-15 89.3 19.0 176 34-221 4-198 (212)
106 2fo7_A Synthetic consensus TPR 99.4 7.2E-11 2.5E-15 83.1 16.8 129 53-184 3-131 (136)
107 3qou_A Protein YBBN; thioredox 99.4 2E-11 6.8E-16 98.1 15.2 168 48-219 114-283 (287)
108 2uy1_A Cleavage stimulation fa 99.4 5.7E-09 2E-13 90.1 31.1 320 17-359 16-412 (493)
109 2yhc_A BAMD, UPF0169 lipoprote 99.3 4.5E-10 1.5E-14 86.8 21.3 186 50-256 3-214 (225)
110 3qou_A Protein YBBN; thioredox 99.3 8.1E-11 2.8E-15 94.6 17.4 168 188-358 114-282 (287)
111 2vsy_A XCC0866; transferase, g 99.3 4.9E-11 1.7E-15 105.7 17.5 154 29-186 2-158 (568)
112 2r5s_A Uncharacterized protein 99.3 2.3E-11 7.9E-16 90.2 12.9 162 193-358 8-171 (176)
113 2ifu_A Gamma-SNAP; membrane fu 99.3 8.6E-11 2.9E-15 95.5 15.5 200 28-253 3-222 (307)
114 2vsy_A XCC0866; transferase, g 99.3 1.7E-10 5.7E-15 102.4 18.1 163 64-231 2-167 (568)
115 2ifu_A Gamma-SNAP; membrane fu 99.2 1.1E-10 3.8E-15 94.8 13.3 226 99-353 4-254 (307)
116 3q7a_A Farnesyltransferase alp 99.2 1.6E-08 5.5E-13 81.8 24.8 183 19-206 57-257 (349)
117 3q7a_A Farnesyltransferase alp 99.2 7.1E-08 2.4E-12 78.1 27.3 218 103-325 71-331 (349)
118 4gco_A Protein STI-1; structur 99.2 4.1E-10 1.4E-14 78.1 12.5 96 18-115 15-110 (126)
119 4gco_A Protein STI-1; structur 99.2 6.2E-10 2.1E-14 77.2 13.1 109 51-162 13-121 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.6E-09 1.2E-13 81.0 18.3 129 17-151 7-151 (213)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4.4E-09 1.5E-13 80.4 18.5 128 52-185 7-150 (213)
122 3u3w_A Transcriptional activat 99.2 3.6E-09 1.2E-13 85.4 18.2 202 13-220 43-266 (293)
123 2c2l_A CHIP, carboxy terminus 99.2 4.3E-10 1.5E-14 90.0 12.2 194 15-219 3-198 (281)
124 4f3v_A ESX-1 secretion system 99.1 3.9E-09 1.3E-13 82.5 17.0 199 168-372 18-247 (282)
125 2lni_A Stress-induced-phosphop 99.1 2.5E-09 8.5E-14 74.9 14.6 122 11-135 11-132 (133)
126 2c2l_A CHIP, carboxy terminus 99.1 7.1E-10 2.4E-14 88.7 13.1 97 51-149 4-100 (281)
127 3gyz_A Chaperone protein IPGC; 99.1 9.7E-10 3.3E-14 78.5 12.2 98 86-185 36-133 (151)
128 1a17_A Serine/threonine protei 99.1 3.4E-09 1.2E-13 77.4 15.6 97 17-115 14-110 (166)
129 1p5q_A FKBP52, FK506-binding p 99.1 1.7E-10 6E-15 94.8 9.0 143 30-175 127-283 (336)
130 1a17_A Serine/threonine protei 99.1 5.2E-09 1.8E-13 76.4 16.1 128 52-182 14-143 (166)
131 2uy1_A Cleavage stimulation fa 99.1 1.8E-07 6.2E-12 80.8 27.5 296 11-324 42-412 (493)
132 3u3w_A Transcriptional activat 99.1 6.6E-08 2.2E-12 77.9 23.4 161 92-252 81-263 (293)
133 2qfc_A PLCR protein; TPR, HTH, 99.1 1.8E-08 6.2E-13 81.2 20.0 162 197-358 81-264 (293)
134 2qfc_A PLCR protein; TPR, HTH, 99.1 5.2E-09 1.8E-13 84.4 16.7 171 50-220 74-266 (293)
135 4f3v_A ESX-1 secretion system 99.1 5.1E-09 1.7E-13 81.9 15.7 197 133-337 18-247 (282)
136 3dss_A Geranylgeranyl transfer 99.1 4.7E-07 1.6E-11 72.9 27.4 199 17-220 27-267 (331)
137 2vgx_A Chaperone SYCD; alterna 99.1 1.5E-09 5.2E-14 77.6 11.8 99 50-150 20-118 (148)
138 3gyz_A Chaperone protein IPGC; 99.1 8.7E-10 3E-14 78.7 10.4 126 16-151 9-134 (151)
139 2e2e_A Formate-dependent nitri 99.1 1.8E-09 6.1E-14 80.0 12.2 122 27-151 21-145 (177)
140 3gw4_A Uncharacterized protein 99.1 2E-09 6.9E-14 81.6 12.8 157 27-184 3-175 (203)
141 1na0_A Designed protein CTPR3; 99.1 7.5E-09 2.6E-13 71.4 14.6 98 16-115 9-106 (125)
142 2vyi_A SGTA protein; chaperone 99.1 3E-09 1E-13 74.1 12.4 117 16-135 12-128 (131)
143 2e2e_A Formate-dependent nitri 99.1 2.3E-09 8E-14 79.4 12.3 121 62-185 21-144 (177)
144 2lni_A Stress-induced-phosphop 99.1 6.4E-09 2.2E-13 72.8 13.8 118 49-169 14-131 (133)
145 2vgx_A Chaperone SYCD; alterna 99.0 1.7E-09 5.8E-14 77.3 10.3 110 73-185 9-118 (148)
146 2xcb_A PCRH, regulatory protei 99.0 3.1E-09 1.1E-13 75.5 11.5 98 51-150 18-115 (142)
147 2vyi_A SGTA protein; chaperone 99.0 5.6E-09 1.9E-13 72.8 12.5 119 50-171 11-129 (131)
148 1na0_A Designed protein CTPR3; 99.0 1.7E-08 6E-13 69.5 15.0 113 51-166 9-121 (125)
149 1p5q_A FKBP52, FK506-binding p 99.0 1E-08 3.4E-13 84.3 14.9 131 15-148 146-292 (336)
150 3gw4_A Uncharacterized protein 99.0 4.4E-09 1.5E-13 79.7 11.9 156 168-324 4-175 (203)
151 2fbn_A 70 kDa peptidylprolyl i 99.0 9.5E-10 3.2E-14 83.1 7.7 146 26-174 14-174 (198)
152 2xcb_A PCRH, regulatory protei 99.0 7.1E-09 2.4E-13 73.6 11.3 100 15-116 17-116 (142)
153 3upv_A Heat shock protein STI1 99.0 1.6E-08 5.4E-13 70.1 12.5 98 16-115 4-101 (126)
154 1elw_A TPR1-domain of HOP; HOP 99.0 3.2E-08 1.1E-12 67.4 13.9 98 16-115 4-101 (118)
155 4gcn_A Protein STI-1; structur 99.0 1.2E-08 4.2E-13 70.7 11.6 98 17-115 9-112 (127)
156 2fbn_A 70 kDa peptidylprolyl i 98.9 2.5E-09 8.5E-14 80.8 8.4 151 57-211 10-176 (198)
157 1elw_A TPR1-domain of HOP; HOP 98.9 8.4E-08 2.9E-12 65.2 14.6 97 52-150 5-101 (118)
158 3upv_A Heat shock protein STI1 98.9 6E-08 2E-12 67.1 13.7 95 88-184 6-100 (126)
159 3sz7_A HSC70 cochaperone (SGT) 98.9 2.8E-08 9.7E-13 72.4 12.5 100 14-115 9-108 (164)
160 3dss_A Geranylgeranyl transfer 98.9 6.2E-06 2.1E-10 66.5 26.4 138 63-204 41-192 (331)
161 4gcn_A Protein STI-1; structur 98.9 5.6E-08 1.9E-12 67.3 12.6 61 53-114 10-70 (127)
162 3q49_B STIP1 homology and U bo 98.9 5.9E-08 2E-12 68.2 12.8 98 15-114 8-105 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.9 6.3E-08 2.2E-12 70.5 13.3 100 50-151 10-109 (164)
164 2kck_A TPR repeat; tetratricop 98.9 4.1E-08 1.4E-12 66.1 11.5 98 16-115 6-106 (112)
165 3q49_B STIP1 homology and U bo 98.9 7.8E-08 2.7E-12 67.6 12.9 100 49-150 7-106 (137)
166 2dba_A Smooth muscle cell asso 98.8 1.3E-07 4.5E-12 67.3 14.1 99 15-115 27-128 (148)
167 2kck_A TPR repeat; tetratricop 98.8 7.8E-08 2.7E-12 64.7 12.2 99 50-150 5-106 (112)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 6.2E-09 2.1E-13 89.3 7.9 157 31-211 249-405 (457)
169 2dba_A Smooth muscle cell asso 98.8 2.8E-07 9.7E-12 65.6 15.3 114 48-165 25-142 (148)
170 1hxi_A PEX5, peroxisome target 98.8 3.1E-08 1E-12 68.0 9.7 97 17-115 18-114 (121)
171 1elr_A TPR2A-domain of HOP; HO 98.8 4.1E-08 1.4E-12 68.3 10.5 99 16-115 4-108 (131)
172 1elr_A TPR2A-domain of HOP; HO 98.8 1.1E-07 3.8E-12 66.0 12.1 94 89-184 7-107 (131)
173 2xev_A YBGF; tetratricopeptide 98.8 3.6E-07 1.2E-11 63.3 14.0 95 19-115 5-105 (129)
174 4b4t_Q 26S proteasome regulato 98.8 1.1E-06 3.8E-11 75.0 19.7 198 92-289 10-244 (434)
175 1hxi_A PEX5, peroxisome target 98.8 1.2E-07 4.2E-12 64.9 11.0 60 123-183 53-112 (121)
176 4b4t_Q 26S proteasome regulato 98.7 8.5E-07 2.9E-11 75.7 17.8 199 56-254 9-244 (434)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 2.3E-07 7.9E-12 79.6 13.6 138 16-176 268-405 (457)
178 1wao_1 Serine/threonine protei 98.7 1.1E-08 3.7E-13 88.2 5.4 125 18-145 8-134 (477)
179 2xev_A YBGF; tetratricopeptide 98.7 8.7E-07 3E-11 61.4 14.1 94 55-150 6-105 (129)
180 1wao_1 Serine/threonine protei 98.7 2.2E-08 7.5E-13 86.3 6.7 125 53-180 8-134 (477)
181 1ihg_A Cyclophilin 40; ppiase 98.7 2.9E-07 9.8E-12 76.5 12.7 91 85-177 272-362 (370)
182 3ro3_A PINS homolog, G-protein 98.7 1.2E-07 4.1E-12 68.7 9.1 132 228-359 11-157 (164)
183 3k9i_A BH0479 protein; putativ 98.7 8.3E-08 2.8E-12 65.4 7.4 87 28-115 2-90 (117)
184 3ro3_A PINS homolog, G-protein 98.6 2.9E-07 9.8E-12 66.6 10.7 131 53-183 11-156 (164)
185 1ihg_A Cyclophilin 40; ppiase 98.6 4.9E-07 1.7E-11 75.1 13.2 91 120-212 272-362 (370)
186 1dce_A Protein (RAB geranylger 98.6 2.6E-06 9E-11 74.8 18.2 174 28-206 40-241 (567)
187 3rkv_A Putative peptidylprolyl 98.6 3.7E-07 1.3E-11 66.3 10.7 62 88-150 65-126 (162)
188 3rkv_A Putative peptidylprolyl 98.6 5.3E-07 1.8E-11 65.4 11.5 100 16-116 11-127 (162)
189 3k9i_A BH0479 protein; putativ 98.6 1.6E-07 5.6E-12 63.9 7.3 87 238-325 2-90 (117)
190 2hr2_A Hypothetical protein; a 98.6 9.4E-07 3.2E-11 62.4 11.1 97 17-114 12-130 (159)
191 2if4_A ATFKBP42; FKBP-like, al 98.6 3.9E-07 1.3E-11 74.9 10.6 149 51-220 179-328 (338)
192 2if4_A ATFKBP42; FKBP-like, al 98.5 3.8E-07 1.3E-11 75.0 9.3 149 16-185 179-328 (338)
193 1dce_A Protein (RAB geranylger 98.5 1.8E-05 6.2E-10 69.5 20.3 175 65-244 43-244 (567)
194 2hr2_A Hypothetical protein; a 98.5 2.7E-06 9.2E-11 60.1 11.6 61 123-184 59-130 (159)
195 1klx_A Cysteine rich protein B 98.4 1.4E-05 4.9E-10 55.9 14.1 110 31-151 10-127 (138)
196 3n71_A Histone lysine methyltr 98.4 1.6E-06 5.5E-11 74.3 10.4 62 123-184 395-463 (490)
197 3n71_A Histone lysine methyltr 98.4 3.2E-06 1.1E-10 72.5 11.9 126 95-220 318-464 (490)
198 1klx_A Cysteine rich protein B 98.4 1.6E-05 5.4E-10 55.7 13.5 110 66-186 10-127 (138)
199 2l6j_A TPR repeat-containing p 98.4 1.3E-06 4.4E-11 58.6 7.6 91 14-106 2-98 (111)
200 2l6j_A TPR repeat-containing p 98.4 4.3E-07 1.5E-11 61.0 4.7 95 260-356 3-103 (111)
201 2kat_A Uncharacterized protein 98.3 4.5E-06 1.5E-10 56.4 9.7 81 33-115 2-82 (115)
202 1na3_A Designed protein CTPR2; 98.3 4.9E-06 1.7E-10 53.4 9.1 64 16-80 9-72 (91)
203 1zu2_A Mitochondrial import re 98.3 2.7E-06 9.3E-11 60.0 7.4 59 137-198 62-131 (158)
204 1zu2_A Mitochondrial import re 98.3 2.6E-06 8.7E-11 60.1 6.9 87 27-115 13-120 (158)
205 1na3_A Designed protein CTPR2; 98.2 1.4E-05 4.6E-10 51.2 9.9 82 260-343 8-89 (91)
206 2kat_A Uncharacterized protein 98.2 8.8E-06 3E-10 54.9 9.3 78 105-184 4-81 (115)
207 3ma5_A Tetratricopeptide repea 98.2 8E-06 2.7E-10 53.6 7.3 65 15-80 6-70 (100)
208 3ma5_A Tetratricopeptide repea 98.0 3.1E-05 1.1E-09 50.7 8.5 64 120-184 6-69 (100)
209 3ly7_A Transcriptional activat 97.9 0.00046 1.6E-08 56.0 14.2 144 48-196 191-348 (372)
210 3ly7_A Transcriptional activat 97.8 0.00096 3.3E-08 54.2 14.4 143 82-230 190-347 (372)
211 3bee_A Putative YFRE protein; 97.7 0.00033 1.1E-08 44.8 8.4 66 14-80 4-72 (93)
212 3qww_A SET and MYND domain-con 97.6 0.00013 4.5E-09 61.5 7.6 61 88-148 342-409 (433)
213 2kc7_A BFR218_protein; tetratr 97.6 0.00048 1.6E-08 44.6 8.9 60 22-82 6-66 (99)
214 3qwp_A SET and MYND domain-con 97.6 0.00031 1.1E-08 59.3 9.8 88 61-148 297-398 (429)
215 2kc7_A BFR218_protein; tetratr 97.6 0.00021 7E-09 46.4 7.0 57 128-185 7-64 (99)
216 3lvg_A Clathrin heavy chain 1; 97.6 3.7E-08 1.3E-12 81.2 -13.6 265 16-317 54-325 (624)
217 3qwp_A SET and MYND domain-con 97.6 0.00035 1.2E-08 59.1 9.3 92 268-359 294-399 (429)
218 3qww_A SET and MYND domain-con 97.6 0.00049 1.7E-08 58.1 9.9 61 158-218 342-409 (433)
219 3u64_A Protein TP_0956; tetrat 97.5 0.0026 8.8E-08 49.6 12.5 86 137-223 179-272 (301)
220 3u64_A Protein TP_0956; tetrat 97.5 0.021 7.1E-07 44.6 19.5 91 278-370 180-281 (301)
221 3bee_A Putative YFRE protein; 97.5 0.0015 5.1E-08 41.7 9.2 67 48-115 3-72 (93)
222 1pc2_A Mitochondria fission pr 97.5 0.00098 3.3E-08 46.5 8.7 82 32-115 14-100 (152)
223 1pc2_A Mitochondria fission pr 97.3 0.003 1E-07 44.1 9.9 80 104-184 16-99 (152)
224 3mkq_A Coatomer beta'-subunit; 97.2 0.026 9E-07 52.2 18.5 75 90-182 633-707 (814)
225 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0034 1.1E-07 41.1 9.0 66 15-80 4-75 (104)
226 4h7y_A Dual specificity protei 97.2 0.0087 3E-07 41.2 10.4 51 275-326 74-124 (161)
227 4h7y_A Dual specificity protei 97.1 0.014 4.7E-07 40.2 11.1 104 154-259 11-127 (161)
228 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0079 2.7E-07 39.3 10.0 66 50-115 4-75 (104)
229 3mkq_A Coatomer beta'-subunit; 97.0 0.035 1.2E-06 51.5 17.2 157 128-323 606-763 (814)
230 3lvg_A Clathrin heavy chain 1; 96.9 0.00012 4.2E-09 60.9 -0.3 217 14-246 81-324 (624)
231 3mkq_B Coatomer subunit alpha; 96.9 0.052 1.8E-06 38.9 13.0 45 62-112 16-60 (177)
232 3mkq_B Coatomer subunit alpha; 96.9 0.07 2.4E-06 38.3 13.8 130 198-357 12-141 (177)
233 1nzn_A CGI-135 protein, fissio 96.8 0.0094 3.2E-07 39.9 8.2 89 26-115 11-103 (126)
234 1nzn_A CGI-135 protein, fissio 96.7 0.029 9.8E-07 37.6 9.8 82 207-289 17-102 (126)
235 4b4t_P 26S proteasome regulato 96.2 0.47 1.6E-05 40.3 18.3 256 100-356 30-320 (445)
236 1wy6_A Hypothetical protein ST 96.2 0.16 5.4E-06 34.4 15.3 64 298-362 93-156 (172)
237 4ady_A RPN2, 26S proteasome re 96.1 0.84 2.9E-05 42.4 25.7 260 59-324 382-657 (963)
238 4ady_A RPN2, 26S proteasome re 96.1 0.87 3E-05 42.3 24.6 260 25-289 383-657 (963)
239 1wy6_A Hypothetical protein ST 96.1 0.18 6.3E-06 34.0 14.4 66 262-328 92-157 (172)
240 3ffl_A Anaphase-promoting comp 95.6 0.12 4E-06 36.5 8.8 139 13-166 17-165 (167)
241 4gns_B Protein CSD3, chitin bi 95.4 0.23 8E-06 44.9 12.4 127 19-148 251-398 (754)
242 4gns_B Protein CSD3, chitin bi 95.3 0.13 4.6E-06 46.4 10.5 125 55-182 252-397 (754)
243 2ff4_A Probable regulatory pro 95.3 0.15 5E-06 42.5 10.0 74 53-127 173-251 (388)
244 4fhn_B Nucleoporin NUP120; pro 95.1 1.5 5.1E-05 42.5 17.6 52 21-77 817-868 (1139)
245 4b4t_P 26S proteasome regulato 95.1 1.3 4.6E-05 37.5 20.9 260 29-289 29-323 (445)
246 3o48_A Mitochondria fission 1 94.8 0.53 1.8E-05 31.8 9.7 66 259-324 38-106 (134)
247 1v54_E Cytochrome C oxidase po 94.7 0.44 1.5E-05 30.2 9.0 46 314-359 28-73 (109)
248 2ff4_A Probable regulatory pro 94.5 0.39 1.3E-05 40.0 10.8 177 15-192 32-246 (388)
249 4fhn_B Nucleoporin NUP120; pro 94.0 2.2 7.5E-05 41.3 15.9 144 197-347 818-987 (1139)
250 3o48_A Mitochondria fission 1 93.8 0.96 3.3E-05 30.5 10.1 67 118-184 37-106 (134)
251 2y69_E Cytochrome C oxidase su 93.8 0.91 3.1E-05 30.6 9.0 59 314-373 71-129 (152)
252 3ffl_A Anaphase-promoting comp 93.8 1.2 4.1E-05 31.4 11.4 60 159-218 23-90 (167)
253 1y8m_A FIS1; mitochondria, unk 93.3 1.3 4.4E-05 30.4 11.0 68 48-115 36-106 (144)
254 1qsa_A Protein (soluble lytic 92.3 5.8 0.0002 35.3 26.8 142 18-171 9-151 (618)
255 1v54_E Cytochrome C oxidase po 92.2 1.1 3.9E-05 28.4 7.2 43 105-147 29-71 (109)
256 1y8m_A FIS1; mitochondria, unk 92.1 2 6.7E-05 29.5 12.2 68 118-185 36-106 (144)
257 4b4t_R RPN7, 26S proteasome re 91.7 2.3 8E-05 35.9 11.3 98 88-185 133-237 (429)
258 3txn_A 26S proteasome regulato 91.4 5.4 0.00018 33.1 20.4 166 86-252 19-207 (394)
259 4b4t_R RPN7, 26S proteasome re 91.2 2.9 0.0001 35.3 11.4 98 52-149 132-236 (429)
260 2wpv_A GET4, UPF0363 protein Y 90.5 5.6 0.00019 31.7 21.5 27 259-285 132-158 (312)
261 1zbp_A Hypothetical protein VP 90.4 4.4 0.00015 31.3 10.5 55 201-256 7-61 (273)
262 3esl_A Checkpoint serine/threo 90.2 4.3 0.00015 29.8 10.9 55 275-329 93-148 (202)
263 3lpz_A GET4 (YOR164C homolog); 87.7 9.6 0.00033 30.7 22.8 83 258-359 133-215 (336)
264 2wpv_A GET4, UPF0363 protein Y 87.5 9.5 0.00033 30.4 19.2 112 54-180 36-158 (312)
265 1zbp_A Hypothetical protein VP 87.5 8.5 0.00029 29.8 14.1 56 24-80 5-60 (273)
266 3txn_A 26S proteasome regulato 87.0 12 0.00041 31.0 23.9 168 16-184 19-209 (394)
267 3esl_A Checkpoint serine/threo 86.8 7.6 0.00026 28.5 9.6 53 137-189 95-148 (202)
268 1qsa_A Protein (soluble lytic 86.4 17 0.0006 32.3 29.4 114 136-253 229-346 (618)
269 2y69_E Cytochrome C oxidase su 84.8 7.2 0.00025 26.4 9.2 61 277-338 69-129 (152)
270 3lpz_A GET4 (YOR164C homolog); 84.3 15 0.0005 29.6 21.7 165 53-252 37-213 (336)
271 2uwj_G Type III export protein 83.9 6.2 0.00021 25.0 7.1 50 60-115 48-97 (115)
272 2p58_C Putative type III secre 83.5 6.5 0.00022 24.9 7.8 15 60-74 49-63 (116)
273 4a1g_A Mitotic checkpoint seri 83.2 9.4 0.00032 26.5 10.5 54 314-367 83-137 (152)
274 4b4t_S RPN3, 26S proteasome re 82.3 24 0.00081 30.5 11.6 63 17-79 232-298 (523)
275 2wvi_A Mitotic checkpoint seri 80.5 13 0.00044 26.3 10.3 51 280-330 79-130 (164)
276 4aez_C MAD3, mitotic spindle c 79.4 17 0.00059 27.1 8.8 51 279-329 132-183 (223)
277 4a1g_A Mitotic checkpoint seri 78.0 15 0.00051 25.6 9.4 46 175-220 84-130 (152)
278 2uwj_G Type III export protein 73.2 15 0.00051 23.3 7.7 78 66-151 21-98 (115)
279 2wvi_A Mitotic checkpoint seri 72.4 23 0.00078 25.0 9.0 50 140-189 79-129 (164)
280 2p58_C Putative type III secre 72.2 16 0.00055 23.2 8.5 78 66-151 22-99 (116)
281 3eiq_C Programmed cell death p 71.2 41 0.0014 27.5 10.8 64 229-293 220-285 (358)
282 4gq2_M Nucleoporin NUP120; bet 68.4 83 0.0028 29.9 13.8 28 333-360 899-926 (950)
283 4gq2_M Nucleoporin NUP120; bet 67.4 70 0.0024 30.4 11.8 130 22-169 816-949 (950)
284 2d2s_A Exocyst complex compone 65.8 41 0.0014 25.5 8.7 22 22-43 24-45 (235)
285 2ijq_A Hypothetical protein; s 64.0 35 0.0012 24.0 8.2 50 310-359 46-103 (161)
286 2d2s_A Exocyst complex compone 62.0 49 0.0017 25.0 9.0 23 57-79 24-46 (235)
287 2nsz_A Programmed cell death p 60.4 35 0.0012 22.9 7.4 70 263-333 9-80 (129)
288 4aez_C MAD3, mitotic spindle c 59.8 52 0.0018 24.6 8.7 51 139-189 132-183 (223)
289 4ets_A Ferric uptake regulatio 59.3 26 0.0009 24.6 5.9 57 44-101 26-84 (162)
290 1ug3_A EIF4GI, eukaryotic prot 58.9 71 0.0024 25.8 11.9 22 91-112 16-37 (339)
291 1bpo_A Protein (clathrin); cla 58.2 87 0.003 26.7 9.7 111 30-145 343-453 (494)
292 2ion_A PDCD4, programmed cell 57.0 36 0.0012 23.7 6.1 71 262-333 10-82 (152)
293 3eyy_A Putative iron uptake re 50.1 52 0.0018 22.5 6.1 57 42-100 10-66 (145)
294 1mzb_A Ferric uptake regulatio 48.8 59 0.002 21.9 6.8 58 42-100 9-67 (136)
295 2w57_A Ferric uptake regulatio 47.9 65 0.0022 22.2 7.1 59 42-101 8-67 (150)
296 2b7e_A PRE-mRNA processing pro 47.9 16 0.00055 20.5 2.5 29 33-61 3-31 (59)
297 3bqo_A Telomeric repeat-bindin 47.1 40 0.0014 24.6 5.0 17 270-286 126-142 (211)
298 2fe3_A Peroxide operon regulat 46.8 67 0.0023 22.0 7.9 59 42-101 13-71 (145)
299 4ets_A Ferric uptake regulatio 46.2 63 0.0021 22.7 6.1 68 68-136 14-84 (162)
300 3pvs_A Replication-associated 45.9 1.4E+02 0.0047 25.3 12.6 56 133-188 267-327 (447)
301 2fe3_A Peroxide operon regulat 45.4 70 0.0024 21.8 7.2 58 77-135 13-70 (145)
302 3mwm_A ZUR, putative metal upt 45.3 50 0.0017 22.4 5.3 47 55-101 17-63 (139)
303 2ijq_A Hypothetical protein; s 44.9 79 0.0027 22.2 7.5 51 29-79 45-103 (161)
304 3eyy_A Putative iron uptake re 43.8 67 0.0023 22.0 5.8 57 77-135 10-66 (145)
305 2o03_A Probable zinc uptake re 43.6 60 0.002 21.7 5.5 43 59-101 18-60 (131)
306 2o03_A Probable zinc uptake re 43.5 52 0.0018 22.0 5.1 36 100-135 24-59 (131)
307 3jxi_A Vanilloid receptor-rela 43.4 38 0.0013 25.7 5.1 55 23-77 9-72 (260)
308 2ion_A PDCD4, programmed cell 43.2 81 0.0028 21.9 8.2 65 18-83 11-77 (152)
309 4b4t_S RPN3, 26S proteasome re 42.9 1.7E+02 0.0057 25.4 11.5 62 228-289 233-298 (523)
310 2xig_A Ferric uptake regulatio 42.7 80 0.0028 21.7 7.6 59 42-101 18-76 (150)
311 2xig_A Ferric uptake regulatio 42.3 82 0.0028 21.7 7.6 58 77-135 18-75 (150)
312 1ya0_A SMG-7 transcript varian 41.8 1.7E+02 0.0058 25.2 10.1 75 127-203 158-232 (497)
313 2zu6_B Programmed cell death p 41.7 1.3E+02 0.0045 23.9 11.9 69 264-333 169-239 (307)
314 1mzb_A Ferric uptake regulatio 41.0 80 0.0027 21.2 6.4 58 77-135 9-67 (136)
315 3mwm_A ZUR, putative metal upt 40.9 53 0.0018 22.3 4.9 48 20-67 17-64 (139)
316 1wdy_A 2-5A-dependent ribonucl 40.8 1.2E+02 0.004 23.1 7.8 50 92-145 8-60 (285)
317 2w57_A Ferric uptake regulatio 40.1 85 0.0029 21.6 5.9 58 77-135 8-66 (150)
318 3bqo_A Telomeric repeat-bindin 38.8 58 0.002 23.8 4.8 24 57-80 123-146 (211)
319 3bge_A Predicted ATPase; struc 38.4 1.2E+02 0.0039 22.3 8.2 17 100-116 21-37 (201)
320 2r9g_A AAA ATPase, central reg 38.2 1.2E+02 0.004 22.3 9.7 17 100-116 28-44 (204)
321 3t5v_B Nuclear mRNA export pro 36.0 89 0.003 26.6 6.3 60 55-114 180-248 (455)
322 1ya0_A SMG-7 transcript varian 35.4 2.2E+02 0.0074 24.6 9.3 66 29-96 165-230 (497)
323 3ubw_A 14-3-3E, 14-3-3 protein 34.7 1.6E+02 0.0054 22.7 12.1 38 55-92 35-72 (261)
324 3hra_A Ankyrin repeat family p 34.1 1.2E+02 0.0043 21.4 7.2 16 26-41 12-27 (201)
325 1wgl_A TOLL-interacting protei 34.0 49 0.0017 18.5 3.1 48 313-365 10-57 (59)
326 2f6m_A Suppressor protein STP2 33.9 51 0.0017 18.9 3.1 42 19-61 5-46 (65)
327 3qil_A Clathrin heavy chain 1; 33.6 81 0.0028 20.9 4.4 54 16-72 32-85 (125)
328 2crb_A Nuclear receptor bindin 32.9 90 0.0031 19.4 4.3 25 298-322 17-41 (97)
329 1bpo_A Protein (clathrin); cla 31.9 2.4E+02 0.0083 24.1 11.9 140 205-357 343-482 (494)
330 3t5v_B Nuclear mRNA export pro 31.3 1.5E+02 0.0052 25.2 7.0 61 89-149 179-248 (455)
331 3bge_A Predicted ATPase; struc 31.1 1.6E+02 0.0053 21.6 9.1 17 135-151 21-37 (201)
332 2keb_A DNA polymerase subunit 31.0 1E+02 0.0035 19.4 6.8 31 315-345 28-58 (101)
333 3ltm_A Alpha-REP4; protein eng 30.5 1.5E+02 0.0052 21.3 16.7 60 260-324 125-184 (211)
334 2nsz_A Programmed cell death p 30.0 1.2E+02 0.0042 20.2 9.6 63 125-188 11-75 (129)
335 3ltm_A Alpha-REP4; protein eng 28.8 1.6E+02 0.0056 21.2 17.7 154 189-359 31-184 (211)
336 2r9g_A AAA ATPase, central reg 28.8 1.7E+02 0.0059 21.4 10.5 17 135-151 28-44 (204)
337 3uzd_A 14-3-3 protein gamma; s 28.7 2E+02 0.0067 22.0 11.2 170 15-184 3-202 (248)
338 2cwy_A Hypothetical protein TT 28.4 1.1E+02 0.0038 19.1 5.2 50 308-359 13-67 (94)
339 2br9_A 14-3-3E, 14-3-3 protein 27.6 2E+02 0.0068 21.8 10.7 170 15-184 4-201 (234)
340 2fu4_A Ferric uptake regulatio 26.9 1E+02 0.0035 18.2 6.7 58 42-100 8-66 (83)
341 1wdy_A 2-5A-dependent ribonucl 26.9 2E+02 0.007 21.6 9.3 20 22-41 8-27 (285)
342 3eiq_C Programmed cell death p 26.5 2.6E+02 0.009 22.8 15.1 95 263-358 219-319 (358)
343 2rg8_A Programmed cell death p 26.4 1.7E+02 0.0058 20.6 6.1 23 126-148 15-37 (165)
344 3ctd_A Putative ATPase, AAA fa 25.9 2E+02 0.007 21.3 9.8 17 135-151 49-65 (213)
345 1ug3_A EIF4GI, eukaryotic prot 25.2 2.7E+02 0.0092 22.4 10.1 26 18-43 13-38 (339)
346 3ubw_A 14-3-3E, 14-3-3 protein 24.8 2.4E+02 0.0083 21.7 13.4 63 87-149 32-95 (261)
347 1ixm_A SPO0B, protein (sporula 24.4 1.6E+02 0.0053 21.4 5.3 72 276-358 14-85 (192)
348 3jxi_A Vanilloid receptor-rela 24.1 1E+02 0.0035 23.2 4.6 56 58-113 9-73 (260)
349 2rg8_A Programmed cell death p 24.1 1.4E+02 0.0049 21.0 4.9 26 263-288 12-37 (165)
350 2cos_A Serine/threonine protei 23.3 1E+02 0.0034 16.8 3.5 36 317-357 11-48 (54)
351 2zu6_B Programmed cell death p 23.3 2.8E+02 0.0097 22.0 14.7 58 19-78 6-65 (307)
352 3pvs_A Replication-associated 23.1 3.4E+02 0.012 22.9 14.3 55 168-222 267-326 (447)
353 3kea_A K1L; tropism, ANK repea 22.1 2.7E+02 0.0093 21.4 7.3 185 128-333 35-225 (285)
354 3ygs_P Procaspase 9; apoptosis 22.0 1.5E+02 0.0052 18.4 4.5 64 37-106 25-88 (97)
355 1oai_A Nuclear RNA export fact 22.0 98 0.0034 17.3 2.9 21 344-364 33-53 (59)
356 1k1a_A B-cell lymphoma 3-encod 21.9 2.4E+02 0.0081 20.6 8.0 23 24-46 14-36 (241)
357 3kea_A K1L; tropism, ANK repea 21.5 2.8E+02 0.0095 21.3 8.2 17 130-146 101-117 (285)
358 2p22_A Suppressor protein STP2 21.4 1.3E+02 0.0043 21.5 4.0 42 17-59 112-153 (174)
359 3iqu_A 14-3-3 protein sigma; s 21.4 2.7E+02 0.0093 21.1 10.8 176 9-184 1-204 (236)
360 3lxu_X Tripeptidyl-peptidase 2 20.9 5.1E+02 0.017 25.9 9.0 80 278-360 1266-1345(1354)
361 2rpa_A Katanin P60 ATPase-cont 20.8 90 0.0031 18.7 2.7 25 20-44 16-40 (78)
362 3qil_A Clathrin heavy chain 1; 20.6 1.1E+02 0.0039 20.2 3.4 51 264-317 35-85 (125)
363 3ph0_C ASCG; type III secretio 20.5 1.2E+02 0.0042 16.7 3.9 12 67-78 22-33 (61)
364 3lxu_X Tripeptidyl-peptidase 2 20.2 4.6E+02 0.016 26.2 8.6 81 67-150 1265-1345(1354)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-35 Score=261.57 Aligned_cols=347 Identities=12% Similarity=0.039 Sum_probs=306.5
Q ss_pred cccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHH--------------------------------
Q 042039 10 VVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSL-------------------------------- 57 (376)
Q Consensus 10 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------------------------- 57 (376)
.+.++++.+|+.++..|.+.|++++|+++|+++.+.+ +.+...+..+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 3456678999999999999999999999999998875 4455554444
Q ss_pred ------HHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 58 ------IHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 58 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
+..|.+.|++++|.++|+++.+. +++..++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 44556778999999999998875 5789999999999999999999999999999875 44788999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHH
Q 042039 132 CLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHAL 211 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (376)
...|++++|.++++++.... +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..++..+.+.|++++|.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998765 678889999999999999999999999999885 2446889999999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc-
Q 042039 212 KLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR- 290 (376)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 290 (376)
++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.... +.++.+|..++..|.+.|++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 9999999875 5688899999999999999999999999998776 347899999999999999999999999998765
Q ss_pred ---CCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCc
Q 042039 291 ---VLVAD--VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPD 365 (376)
Q Consensus 291 ---~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 365 (376)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+. .|+
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~ 582 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPN 582 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence 45666 7899999999999999999999999999875 347899999999999999999999999999975 444
Q ss_pred hH
Q 042039 366 AS 367 (376)
Q Consensus 366 ~~ 367 (376)
..
T Consensus 583 ~~ 584 (597)
T 2xpi_A 583 EI 584 (597)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-34 Score=258.37 Aligned_cols=248 Identities=13% Similarity=0.106 Sum_probs=156.1
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042039 120 NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFL 199 (376)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 199 (376)
+..++..++..|.+.|++++|.++|+++...+ +.+..++..++.++.+.|++++|..+++++.+. .+.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHH
Confidence 34445555555555555555555555555443 334455555555555555555555555555543 2335666666777
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHH
Q 042039 200 GLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEI 279 (376)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 279 (376)
.|.+.|++++|.++|+++.+.. +.+..++..++..|.+.|++++|+++|+++.... +.+..++..++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766653 3455567777777777777777777777766554 2356667777777777777777
Q ss_pred HHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhhcCChhhHHHH
Q 042039 280 ALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN----AVAPN--VIIFVTLIHGFVRINKPSKVIEL 353 (376)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 353 (376)
|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 460 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777776654 3446667777777777777777777777777654 44555 56777777777777777777777
Q ss_pred HHHHHhCCCCCchHHHHHHH
Q 042039 354 LHKMKEKKVMPDASIVSMVV 373 (376)
Q Consensus 354 ~~~~~~~~~~p~~~~~~~ll 373 (376)
++++.+.+ +.+..++..+.
T Consensus 539 ~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 539 LNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHH
Confidence 77776654 22444554443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.1e-31 Score=224.44 Aligned_cols=342 Identities=14% Similarity=0.056 Sum_probs=302.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
.+...+..+...+...|++++|...++...+.. |.+..+|..++.++...|++++|.+.|+++.+..+. +..+|..++
T Consensus 31 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 108 (388)
T 1w3b_A 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLA 108 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHH
Confidence 345667778888999999999999999998775 778899999999999999999999999999987433 567899999
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHH
Q 042039 94 DELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVE 173 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (376)
.++...|++++|...++++++.+ +.+...+..+...+...|++++|.+.|+++.... |.+..++..++.++...|+++
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999874 3346678889999999999999999999998875 667889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhc
Q 042039 174 EALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLG 253 (376)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (376)
+|...|+++.+.+ +.+...+..+...+...|++++|...+.+..... +.+..++..++.++...|++++|+..++++.
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999863 3467889999999999999999999999998875 5567889999999999999999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHH
Q 042039 254 ILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVII 333 (376)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (376)
...+ .++.++..++.++.+.|++++|...++++.+. .+.+..++..++..+...|++++|...++++.+.. +.+..+
T Consensus 265 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 341 (388)
T 1w3b_A 265 ELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA 341 (388)
T ss_dssp HTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 8763 36788999999999999999999999999877 56788999999999999999999999999998863 336788
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhCCCCCch
Q 042039 334 FVTLIHGFVRINKPSKVIELLHKMKEKKVMPDA 366 (376)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 366 (376)
+..+...|.+.|++++|...++++.+. .|+.
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~ 372 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRI--SPTF 372 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Confidence 999999999999999999999999864 4543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.3e-30 Score=218.20 Aligned_cols=330 Identities=13% Similarity=0.049 Sum_probs=295.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 22 IIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
+...+.+.|++++|++.++++.+.. |.+...+..+...+...|++++|...++..++.. +.+..+|..+...+...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4567889999999999999998775 6678888899999999999999999999998874 3478899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 042039 102 MDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYRE 181 (376)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (376)
+++|...|+++++.. +.+..++..++.++...|++++|.+.|+++.... |.+...+..+..++...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999864 3456789999999999999999999999999876 56677888999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchH
Q 042039 182 MVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDI 261 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 261 (376)
+.+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..++..+...|++++|...++++....+ .+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 99863 4467889999999999999999999999999876 55678899999999999999999999999987763 368
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 042039 262 QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF 341 (376)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (376)
.++..++.++...|++++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 88999999999999999999999999876 45568899999999999999999999999999874 44788999999999
Q ss_pred hhcCChhhHHHHHHHHHhC
Q 042039 342 VRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~ 360 (376)
.+.|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999865
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=5.8e-31 Score=226.32 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=174.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHhcCCCCchH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAND---------WNEAKRLFFEMMDQGVQPSVV 87 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 87 (376)
..++.+|+.|++.|++++|+++|++|.+.|++||..+|+.|+.+|...+. +++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYC 167 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (376)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 042039 168 KNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI 204 (376)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (376)
+.|++++|.+++++|.+.+..|+..||..++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998887754
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=1.5e-30 Score=223.77 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=180.9
Q ss_pred hHHHHHHHHhhhCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC---------h
Q 042039 33 DKAKALFLQMKGENINPDV-VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK---------M 102 (376)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 102 (376)
..+..+.+++.+.+..+.+ ..++.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666677777665554 46888999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 103 DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 042039 183 VSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK 238 (376)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (376)
.+.|+.|+..+|+.++.+|++.|++++|.+++++|.+.+..|+..+++.++..+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988865
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=7.2e-28 Score=207.98 Aligned_cols=336 Identities=12% Similarity=0.089 Sum_probs=282.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
+.++..|..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|...|+++++.++. +..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 4467789999999999999999999999998775 668999999999999999999999999999987544 67889999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCCCChh
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNA---FTYSTL------------MDGFCLTGKINRAEELFGSMESMGCKHDDV 157 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 157 (376)
+.++...|++++|...|+++.+.. +.+. ..+..+ +..+...|++++|...|+++.... +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 999999999999999999999864 2234 455444 455889999999999999998875 67888
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHH-----
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTF----- 232 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 232 (376)
++..++.+|...|++++|+..++++.+. .+.+..++..++..+...|++++|...++++.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 9999999999999999999999999886 34578899999999999999999999999998764 3344444444
Q ss_pred -------HHHHHhCCCHHHHHHHHHHhcccCCCch----HHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHH
Q 042039 233 -------IDGLCKNGYIVEAVELFRTLGILKCELD----IQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNI 301 (376)
Q Consensus 233 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (376)
+..+...|++++|...++.+....+. + ...+..++.++.+.|++++|...++++.+. .+.+...+..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHH
Confidence 78899999999999999999876433 2 457888999999999999999999998876 4557899999
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHH------------HHhhcC-----ChhhHHHHHHHH
Q 042039 302 MIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIH------------GFVRIN-----KPSKVIELLHKM 357 (376)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~~ 357 (376)
++.+|...|++++|...++++.+.... +...+..+.. .|...| +.+++.+.++++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999985322 4566666653 344445 566778888873
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1.3e-26 Score=200.03 Aligned_cols=325 Identities=12% Similarity=0.045 Sum_probs=266.7
Q ss_pred hHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHH
Q 042039 33 DKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLM 112 (376)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (376)
..+...+.++.... |.+...+..++..+.+.|++++|+.+|+++++..+ .+..++..++.++...|++++|...++++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444555555444 66788999999999999999999999999998743 37889999999999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHccCcHHHHHH
Q 042039 113 VQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDD---VSYNIL------------INGYCKNKEVEEALS 177 (376)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~ 177 (376)
++.+ +.+..++..++.++...|++++|...|+++.... +.+. ..+..+ +..+...|++++|+.
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9875 4468889999999999999999999999999875 4444 555555 455899999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC
Q 042039 178 LYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC 257 (376)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (376)
.++++.+. .+.+..++..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|...++++....+
T Consensus 165 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 165 FLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999986 34578889999999999999999999999998875 56788999999999999999999999999987653
Q ss_pred CchHHHHHHH------------HHHHHhCCChHHHHHHHhcccccCCCCC----HHHHHHHHHHHHccCChhHHHHHHHH
Q 042039 258 ELDIQAYNCL------------IDGLCKSGRLEIALELFRSLPRRVLVAD----VVTYNIMIHGLCNDGQMDKAHDLFLD 321 (376)
Q Consensus 258 ~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (376)
. +...+..+ +..+...|++++|...|+++.+.. +.+ ...+..++.++.+.|++++|+..+++
T Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 243 D-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 44555444 888999999999999999998752 223 44788899999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHH
Q 042039 322 MEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASI 368 (376)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 368 (376)
+.+.. +.+...|..+..+|...|++++|...++++.+. .|+...
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 364 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQ 364 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHH
Confidence 98864 336889999999999999999999999999874 555443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.4e-27 Score=205.05 Aligned_cols=342 Identities=11% Similarity=-0.036 Sum_probs=265.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC--------
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQP-------- 84 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------- 84 (376)
.||+.+|..+..++.+.|++++|+..++++.+.+ |.+..++..++.++...|++++|...|+++...+...
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3778888888888888888888888888888765 6677788888888888888888888888887654211
Q ss_pred ----------------------------------------------------------------------chHhHHHHHH
Q 042039 85 ----------------------------------------------------------------------SVVTFNVIMD 94 (376)
Q Consensus 85 ----------------------------------------------------------------------~~~~~~~l~~ 94 (376)
+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 1222333333
Q ss_pred HHHh---CCChHHHHHHHHHHHh-----cCC--------CCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhh
Q 042039 95 ELCK---NGKMDEASRLLDLMVQ-----RDV--------RPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVS 158 (376)
Q Consensus 95 ~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (376)
.+.. .|++++|..+++++.+ ... +.+..++..++..+...|++++|...++++.... +. ..+
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR-VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC-HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc-HHH
Confidence 3443 7888888888888877 311 1224567778888888899999999998888775 23 778
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 042039 159 YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK 238 (376)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (376)
+..++.++...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHH
Confidence 8888888899999999999998888763 3467788888888999999999999999988775 4567788888888999
Q ss_pred CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCC-CC----HHHHHHHHHHHHc---cC
Q 042039 239 NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLV-AD----VVTYNIMIHGLCN---DG 310 (376)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~ 310 (376)
.|++++|...++.+.... +.+...+..++..+...|++++|...++++.+.... ++ ...+..++.++.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999887765 335678888899999999999999999887654211 11 3378888899999 89
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 311 QMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+..
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999988764 2357778888899999999999999999988653
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-26 Score=202.24 Aligned_cols=339 Identities=14% Similarity=0.030 Sum_probs=287.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
+...|......+.+.|++++|+..|+++.+.+ |+..+|..++.++...|++++|.+.++++++.++. +..++..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHH
Confidence 35678888999999999999999999999875 68999999999999999999999999999987543 6788999999
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCC-------------------------------------------------------
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRP------------------------------------------------------- 119 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------------- 119 (376)
++...|++++|...|+++.+.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998764211
Q ss_pred -----------------------ChhhHHHHHHHHHh---cCcHHHHHHHHHHHHh-----cCC--------CCChhhHH
Q 042039 120 -----------------------NAFTYSTLMDGFCL---TGKINRAEELFGSMES-----MGC--------KHDDVSYN 160 (376)
Q Consensus 120 -----------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 160 (376)
+...+...+..+.. .|++++|..+++++.. ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 12233334444443 8999999999999987 311 23456788
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 042039 161 ILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNG 240 (376)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (376)
.++.++...|++++|...++++.+.. |+...+..++.++...|++++|...++.+.... +.+...+..++..+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999864 338889999999999999999999999998875 567788999999999999
Q ss_pred CHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 042039 241 YIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFL 320 (376)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (376)
++++|...++.+...... +...+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999877633 6778999999999999999999999998876 45577889999999999999999999999
Q ss_pred HHHHcCCC-Cc----HHHHHHHHHHHhh---cCChhhHHHHHHHHHhCC
Q 042039 321 DMEENAVA-PN----VIIFVTLIHGFVR---INKPSKVIELLHKMKEKK 361 (376)
Q Consensus 321 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 361 (376)
++.+.... ++ ...+..+...+.. .|++++|...++++.+..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 99865322 11 3388889999999 999999999999998753
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=1.6e-25 Score=187.33 Aligned_cols=319 Identities=11% Similarity=0.049 Sum_probs=238.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
|+..+..+...+...|++++|+..|+++.+.. |.+..++..++.++...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 46778889999999999999999999998875 667889999999999999999999999999987433 6788899999
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCC--CChhhHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVR--PNAFTYSTL------------MDGFCLTGKINRAEELFGSMESMGCKHDDVSYN 160 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (376)
++...|++++|...++++.+.... .+...+..+ +..+...|++++|...++++.... |.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999886320 244445444 577788888888888888888775 56777888
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHH----------
Q 042039 161 ILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYN---------- 230 (376)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 230 (376)
.++.++...|++++|...++++.+. .+.+..++..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 8888888888888888888888876 34467788888888888888888888888887764 33333222
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHhcccCCCchH----HHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHH
Q 042039 231 --TFIDGLCKNGYIVEAVELFRTLGILKCELDI----QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIH 304 (376)
Q Consensus 231 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (376)
.++..+.+.|++++|...++++...... ++ ..+..++.++...|++++|...++++.+. .+.+..++..++.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 2255567777777777777777655432 22 23445667777777777777777777665 3446667777777
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 042039 305 GLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF 341 (376)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (376)
++...|++++|...|+++.+..+. +...+..+..+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 350 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQ 350 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 777777777777777777765321 344445444443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=6.9e-25 Score=193.61 Aligned_cols=336 Identities=13% Similarity=0.071 Sum_probs=255.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
...|..+...+.+.|++++|+..|+++.+.+ |.++.++..++.++...|++++|++.|+++++.++. +..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4567788888888888888888888888775 667888888888888888888888888888887533 67778888888
Q ss_pred HHhCCChHHHHHHHHHH---------------------------------------------------------------
Q 042039 96 LCKNGKMDEASRLLDLM--------------------------------------------------------------- 112 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~--------------------------------------------------------------- 112 (376)
+...|++++|...|+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 88888888887766422
Q ss_pred ----------------------------------------------HhcCCCCC--------hhhHHHHHHHHHhcCcHH
Q 042039 113 ----------------------------------------------VQRDVRPN--------AFTYSTLMDGFCLTGKIN 138 (376)
Q Consensus 113 ----------------------------------------------~~~~~~~~--------~~~~~~l~~~~~~~~~~~ 138 (376)
++. .|+ ..++..+...+...|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 111 111 123455566677778888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 042039 139 RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (376)
+|...++++.... |+..++..++.++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888764 447778888888888888888888888888753 3457778888888888888888888888888
Q ss_pred hcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccC-----CC
Q 042039 219 RDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV-----LV 293 (376)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~ 293 (376)
+.. +.+...+..++.++...|++++|...++.+.... +.+...+..++..+...|++++|...++++.+.. ..
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 765 4566778888888888888888888888887765 3356778888888888888888888888876432 11
Q ss_pred CCHHHHHHHHHHHHcc----------CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 294 ADVVTYNIMIHGLCND----------GQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 294 ~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
.....+.....++... |++++|...++++.+... .+...+..+...|.+.|++++|.+.|+++.+..
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1222344556667777 888899999988887643 356788889999999999999999999988754
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.8e-24 Score=178.94 Aligned_cols=309 Identities=12% Similarity=0.055 Sum_probs=262.1
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (376)
++..+..++..+...|++++|+..|+++++..+. +..++..+..++...|++++|...++++++.. +.+...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4677888999999999999999999999987543 67899999999999999999999999999874 446788999999
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCC---CChhhHHHH------------HHHHHccCcHHHHHHHHHHHHHCCCCCCHhHH
Q 042039 130 GFCLTGKINRAEELFGSMESMGCK---HDDVSYNIL------------INGYCKNKEVEEALSLYREMVSKGIKPTVVTY 194 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 194 (376)
++...|++++|...++++.... + .+...+..+ +..+...|++++|+..++++.+. .+.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHH
Confidence 9999999999999999999875 3 355555555 68889999999999999999986 34578889
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHH---------
Q 042039 195 NTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYN--------- 265 (376)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 265 (376)
..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++.+....+. +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 999999999999999999999999875 667889999999999999999999999999876533 333332
Q ss_pred ---HHHHHHHhCCChHHHHHHHhcccccCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 042039 266 ---CLIDGLCKSGRLEIALELFRSLPRRVLVADV----VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLI 338 (376)
Q Consensus 266 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (376)
.++..+...|++++|...++++.+.. +.+. ..+..++.++...|++++|...++++.+.. +.+..++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 33777899999999999999988762 3333 335568889999999999999999999864 33788999999
Q ss_pred HHHhhcCChhhHHHHHHHHHhCCCCCchHH
Q 042039 339 HGFVRINKPSKVIELLHKMKEKKVMPDASI 368 (376)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 368 (376)
..|...|++++|...++++.+. .|+...
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 341 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH--NENDQQ 341 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChH
Confidence 9999999999999999999965 455443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.1e-24 Score=175.61 Aligned_cols=288 Identities=14% Similarity=0.051 Sum_probs=170.9
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH
Q 042039 12 CKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV 91 (376)
Q Consensus 12 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (376)
.+.++..+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.... +...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 34455566666666666677777777777666554 445556666666666667777777777766665322 4556666
Q ss_pred HHHHHHhCC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 042039 92 IMDELCKNG-KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK 170 (376)
Q Consensus 92 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (376)
+...+...| ++++|...++++.+.. +.+...+..++.++...|++++|...++++.... +.+...+..++.++...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 666666666 6666777776666653 2345566666666666677777777776666654 334555666666666666
Q ss_pred cHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC--------CCCCcchHHHHHHHHHhCCCH
Q 042039 171 EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD--------VAADTSTYNTFIDGLCKNGYI 242 (376)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 242 (376)
++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+....++..++.++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 6777766666666642 3345566666666666666666666666665431 022234555555556666666
Q ss_pred HHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHH
Q 042039 243 VEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGL 306 (376)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (376)
++|...++++..... .+...+..++.++...|++++|...++++.+. .+.+...+..+..++
T Consensus 253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHH
Confidence 666666655554432 24455555555555555565665555555544 233444555555544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.7e-24 Score=176.95 Aligned_cols=294 Identities=15% Similarity=0.055 Sum_probs=245.9
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL 127 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (376)
+.+...+..++..+...|++++|.++|+++.+..+. +...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 556778888999999999999999999999887433 56677778888999999999999999999874 4467888999
Q ss_pred HHHHHhcC-cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccc
Q 042039 128 MDGFCLTG-KINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ 206 (376)
Q Consensus 128 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (376)
+..+...| ++++|...|+++.... +.+...+..++.++...|++++|+..++++.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999998876 5677889999999999999999999999998863 3356777789999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC--------CCchHHHHHHHHHHHHhCCChH
Q 042039 207 VEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK--------CELDIQAYNCLIDGLCKSGRLE 278 (376)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~ 278 (376)
+++|...++++.+.. +.+...+..++..+...|++++|...++++.... .+.....+..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998875 5667888999999999999999999999886532 1224578889999999999999
Q ss_pred HHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH-hhcCChh
Q 042039 279 IALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF-VRINKPS 348 (376)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 348 (376)
+|...++++.+. .+.+...+..++.++...|++++|.+.++++.+... .+...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 999999998876 355778899999999999999999999999987642 2677778787777 4555544
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=1.2e-23 Score=176.67 Aligned_cols=313 Identities=14% Similarity=0.053 Sum_probs=220.8
Q ss_pred cCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHH-HHHHHHhcCCC-C--chHhHHHHHHHHHhCCChHH
Q 042039 29 EGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKR-LFFEMMDQGVQ-P--SVVTFNVIMDELCKNGKMDE 104 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~ 104 (376)
.+.++.+...|+.+...+ |+ ++...|++++|.+ .+++....... | +...+..+...+...|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 344555555555555442 11 2334577888887 77766544221 1 34567778888888888888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 105 ASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
|...++++++.. +.+..++..++.++...|++++|...++++.... |.+..++..++.++...|++++|...++++..
T Consensus 83 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888764 4467778888888888888888888888887775 56777888888888888888888888888887
Q ss_pred CCCCCCHhHHHH---------------HHHHHHhccchHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhCCCHHHHHHH
Q 042039 185 KGIKPTVVTYNT---------------LFLGLFEIHQVEHALKLFEEMQRDDVAA-DTSTYNTFIDGLCKNGYIVEAVEL 248 (376)
Q Consensus 185 ~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 248 (376)
.... +...+.. .+..+...|++++|...++++.+..... +..++..++..+...|++++|+..
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5322 2222211 1333348899999999999998875221 577889999999999999999999
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 042039 249 FRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVA 328 (376)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (376)
++++.... +.+...+..++..+...|++++|...++++.+. .+.+...+..++.++...|++++|...|+++.+....
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99988775 336789999999999999999999999998876 4567889999999999999999999999999865322
Q ss_pred C----------cHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 329 P----------NVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 329 ~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
. ...+|..+..+|...|++++|..++++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1 1678999999999999999999887743
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=4.9e-23 Score=172.92 Aligned_cols=292 Identities=14% Similarity=-0.030 Sum_probs=235.0
Q ss_pred HHHhcCChhHHHH-HHHHhhhCCCC-C--ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 25 GLCKEGFVDKAKA-LFLQMKGENIN-P--DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 25 ~~~~~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
++...|++++|++ .+++....... | +...+..++..+...|++++|...|+++++..+. +..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 3445688999998 88877655311 1 3567889999999999999999999999987533 7788999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHH----------------HHHH
Q 042039 101 KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYN----------------ILIN 164 (376)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~ 164 (376)
++++|...++++++.. +.+..++..++.++...|++++|...++++.... +.+...+. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999999875 4578899999999999999999999999998875 33333332 2344
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHH
Q 042039 165 GYCKNKEVEEALSLYREMVSKGIKP-TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIV 243 (376)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (376)
.+ ..|++++|...++++.+..... +..++..++..+...|++++|...++++.... +.+..++..++..+...|+++
T Consensus 191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred Hh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 44 8999999999999999863221 57889999999999999999999999998875 556788999999999999999
Q ss_pred HHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCC-----------HHHHHHHHHHHHccCCh
Q 042039 244 EAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVAD-----------VVTYNIMIHGLCNDGQM 312 (376)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~ 312 (376)
+|...++++.... +.+...+..++.++...|++++|...++++.+.. +.+ ..+|..++.++...|++
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 9999999998775 3468899999999999999999999999987642 222 68899999999999999
Q ss_pred hHHHHHHHHHH
Q 042039 313 DKAHDLFLDME 323 (376)
Q Consensus 313 ~~a~~~~~~~~ 323 (376)
++|..++++..
T Consensus 347 ~~A~~~~~~~l 357 (368)
T 1fch_A 347 DAYGAADARDL 357 (368)
T ss_dssp GGHHHHHTTCH
T ss_pred HhHHHhHHHHH
Confidence 99999887543
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.1e-21 Score=173.04 Aligned_cols=307 Identities=12% Similarity=0.036 Sum_probs=256.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc------------
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ------------ 80 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------ 80 (376)
+.++.+|..+..++.+.|++++|++.|+++.+.+ |.+..++..++.++...|++++|...|+.+...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 3467889999999999999999999999998876 668889999999999999999888877422100
Q ss_pred --------------------------------------------------------------------------------
Q 042039 81 -------------------------------------------------------------------------------- 80 (376)
Q Consensus 81 -------------------------------------------------------------------------------- 80 (376)
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred ---------------CCCCc--------hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcH
Q 042039 81 ---------------GVQPS--------VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKI 137 (376)
Q Consensus 81 ---------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (376)
...|+ ..++..+...+...|++++|...++++.+.. |+...+..++..+...|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 01111 1235566677888999999999999999874 5578899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHH
Q 042039 138 NRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEM 217 (376)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (376)
++|...++++.... +.+..++..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998876 6678899999999999999999999999999863 335778999999999999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCC-----chHHHHHHHHHHHHhC----------CChHHHHH
Q 042039 218 QRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCE-----LDIQAYNCLIDGLCKS----------GRLEIALE 282 (376)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------~~~~~a~~ 282 (376)
.+.. +.+...+..++..+...|++++|...++.+...... .....+...+.++... |++++|..
T Consensus 371 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 371 KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 9875 566788999999999999999999999998654311 1223345566777777 99999999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 042039 283 LFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENA 326 (376)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (376)
.++++.+. .+.+...+..++.++...|++++|.+.|+++.+..
T Consensus 450 ~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 450 LLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999876 45678899999999999999999999999999864
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=5.8e-20 Score=159.98 Aligned_cols=323 Identities=12% Similarity=0.039 Sum_probs=175.9
Q ss_pred ChhhHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCCch
Q 042039 15 NTVTYNTIIDGLCK----EGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCH----ANDWNEAKRLFFEMMDQGVQPSV 86 (376)
Q Consensus 15 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 86 (376)
|+.++..+...|.. .+++++|+..|++..+.| ++.++..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666666 666666666666666543 45566666666666 666666666666666543 44
Q ss_pred HhHHHHHHHHHh----CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCChhh
Q 042039 87 VTFNVIMDELCK----NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL----TGKINRAEELFGSMESMGCKHDDVS 158 (376)
Q Consensus 87 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (376)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +..+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455556666655 556666666666665543 34455555555554 456666666666655543 4455
Q ss_pred HHHHHHHHHc----cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----ccchHHHHHHHHHHHhcCC--------
Q 042039 159 YNILINGYCK----NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE----IHQVEHALKLFEEMQRDDV-------- 222 (376)
Q Consensus 159 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~-------- 222 (376)
+..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555554 555555555555555432 33344444444443 4444555555544443320
Q ss_pred -------------------------CCCcchHHHHHHHHHhC-----CCHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Q 042039 223 -------------------------AADTSTYNTFIDGLCKN-----GYIVEAVELFRTLGILKCELDIQAYNCLIDGLC 272 (376)
Q Consensus 223 -------------------------~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (376)
..+...+..+...|... +++++|+.+++++.+.+ ++..+..++..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 01223344444444444 45555555555544432 2334444444444
Q ss_pred hCC---ChHHHHHHHhcccccCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--
Q 042039 273 KSG---RLEIALELFRSLPRRVLVADVVTYNIMIHGLCN----DGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR-- 343 (376)
Q Consensus 273 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 343 (376)
..| ++++|...|++..+. .++..+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred hCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 433 455555555555543 244555556666655 566666666666666543 34455555555555
Q ss_pred --cCChhhHHHHHHHHHhCC
Q 042039 344 --INKPSKVIELLHKMKEKK 361 (376)
Q Consensus 344 --~g~~~~a~~~~~~~~~~~ 361 (376)
.+++++|..+|++..+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 566666666666666554
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=1e-19 Score=158.36 Aligned_cols=302 Identities=13% Similarity=0.043 Sum_probs=227.5
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHh----CCChH
Q 042039 32 VDKAKALFLQMKGENINPDVVTYNSLIHGLCH----ANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCK----NGKMD 103 (376)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 103 (376)
...+...++...+.| ++.++..+...|.. .+++++|...|++..+.| +...+..+...|.. .++++
T Consensus 23 ~~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 23 GNVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp --CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred hhHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 344567777776654 78889999999988 899999999999998863 67788889999998 89999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCcHHHH
Q 042039 104 EASRLLDLMVQRDVRPNAFTYSTLMDGFCL----TGKINRAEELFGSMESMGCKHDDVSYNILINGYCK----NKEVEEA 175 (376)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 175 (376)
+|...|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ ++..+..+..+|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999865 66778889999988 789999999999998865 67788889999987 8899999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHh----ccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----CCCHHHHHH
Q 042039 176 LSLYREMVSKGIKPTVVTYNTLFLGLFE----IHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK----NGYIVEAVE 247 (376)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 247 (376)
++.|++..+.+ +...+..+...|.. .++.++|...+.+..+.+ +...+..+...|.. .+++++|..
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999864 67888889999888 899999999999998765 45667777777775 778888888
Q ss_pred HHHHhcccCCCchHHHHHHHHHHHHh----CCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHcc-----CChhHHHHH
Q 042039 248 LFRTLGILKCELDIQAYNCLIDGLCK----SGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCND-----GQMDKAHDL 318 (376)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~ 318 (376)
+|++....+ ++..+..++..|.. .+++++|...|++..+.+ +...+..+...|... +++++|...
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 888877654 34556666666666 677777777777766542 445555666666555 666666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcC---ChhhHHHHHHHHHhC
Q 042039 319 FLDMEENAVAPNVIIFVTLIHGFVRIN---KPSKVIELLHKMKEK 360 (376)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 360 (376)
|+++.+.+ +...+..+...|...| ++++|.++|++..+.
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 66665542 2334444444444433 445555555555444
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=6.4e-22 Score=163.25 Aligned_cols=268 Identities=10% Similarity=-0.051 Sum_probs=189.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..++.++...|++++|.+.++++.+.... +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 45667888888999999999999999988765 567888888999999999999999999998887433 6778888888
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH--------------HH-HHHhcCcHHHHHHHHHHHHhcCCCCChhhH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL--------------MD-GFCLTGKINRAEELFGSMESMGCKHDDVSY 159 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (376)
.+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.... +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999988764 2233333333 22 3566677777777777776664 4466677
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 042039 160 NILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKN 239 (376)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (376)
..++.++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..++.++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776652 3345666677777777777777777777766654 34556666677777777
Q ss_pred CCHHHHHHHHHHhcccCCCc-----------hHHHHHHHHHHHHhCCChHHHHHHHhccc
Q 042039 240 GYIVEAVELFRTLGILKCEL-----------DIQAYNCLIDGLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (376)
|++++|...++++....... +...+..++.++...|++++|..++++..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77777777776665443221 35566666666667777777766666544
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=2e-22 Score=169.01 Aligned_cols=266 Identities=12% Similarity=-0.036 Sum_probs=144.6
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+..++..+.+.|++++|+..|+++++..+. +..++..+..++...|++++|...|+++++.. +.+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344555555555556666666666555554322 45555555555556666666666665555543 2235555555555
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhh----------HHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCHhHHHHHHH
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVS----------YNILINGYCKNKEVEEALSLYREMVSKGIK-PTVVTYNTLFL 199 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 199 (376)
+...|++++|...++++.... +.+... +..++.++...|++++|+..++++.+.... ++..++..++.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 666666666666665555442 111122 223355666666666666666666654211 14555666666
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHH
Q 042039 200 GLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEI 279 (376)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 279 (376)
.+...|++++|...++++.+.. +.+..++..++.++...|++++|+..++++.... +.+..++..++.+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 6666666666666666666553 3445566666666666666666666666665544 2245566666666666666666
Q ss_pred HHHHHhcccccCC-----------CCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 042039 280 ALELFRSLPRRVL-----------VADVVTYNIMIHGLCNDGQMDKAHDLFLD 321 (376)
Q Consensus 280 a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (376)
|...|+++.+... ..+...|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 6666666543210 00245566666666666666666665544
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=3.3e-23 Score=173.77 Aligned_cols=265 Identities=12% Similarity=0.036 Sum_probs=222.5
Q ss_pred chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 85 SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILIN 164 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (376)
+...+..++..+...|++++|..+|+++++.. +.+..++..++.++...|++++|...|+++.... |.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568889999999999999999999999875 4578899999999999999999999999999886 667889999999
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCC-----------HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC--CcchHHH
Q 042039 165 GYCKNKEVEEALSLYREMVSKGIKPT-----------VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA--DTSTYNT 231 (376)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 231 (376)
+|...|++++|+..++++.+.. |+ ...+..+...+...|++++|...++++.+.. +. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence 9999999999999999998852 22 2223445788999999999999999999875 33 6788999
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC
Q 042039 232 FIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ 311 (376)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (376)
++..+...|++++|+..++++.... +.+..++..++.++...|++++|...|+++.+. .+.+..++..++.+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCC
Confidence 9999999999999999999998876 347889999999999999999999999999876 45568899999999999999
Q ss_pred hhHHHHHHHHHHHcCCC-----------CcHHHHHHHHHHHhhcCChhhHHHHHHH
Q 042039 312 MDKAHDLFLDMEENAVA-----------PNVIIFVTLIHGFVRINKPSKVIELLHK 356 (376)
Q Consensus 312 ~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (376)
+++|...|+++.+.... .+...|..+..++...|+.+.+....++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999864211 1357899999999999999988887665
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=9.2e-22 Score=162.31 Aligned_cols=280 Identities=13% Similarity=-0.042 Sum_probs=179.8
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+..++..+...|++++|..+|+++.+..+. +...+..+..++...|++++|...++++.+.. +.+..++..++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344555666666666666666666666655322 45555666666666666666666666666543 2345555566666
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHH-HH-HHHhccchH
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTL-FL-GLFEIHQVE 208 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 208 (376)
+...|++++|.+.++++.... +.+...+..+.... |+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 666666666666666665543 22222222220000 000011111 22 356677777
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccc
Q 042039 209 HALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (376)
+|...++++.+.. +.+...+..++..+...|++++|...++++.... +.+...+..++..+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777664 4466677777788888888888888888877665 3356778888888888888888888888877
Q ss_pred ccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-----------cHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 289 RRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAP-----------NVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
+. .+.+...+..++.++...|++++|...++++.+..... +...+..+..++.+.|++++|..++++.
T Consensus 234 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DI-NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred Hc-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 65 34567788888888888899999998888887653221 4677888888899999999998887754
Q ss_pred H
Q 042039 358 K 358 (376)
Q Consensus 358 ~ 358 (376)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 3
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.3e-20 Score=163.66 Aligned_cols=350 Identities=12% Similarity=-0.043 Sum_probs=242.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhC--------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-----
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGE--------NINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ----- 80 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 80 (376)
.....||.+...+...|++++|++.|++..+. ..+....+|..++.+|...|++++|...++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987542 12345678999999999999999999999988753
Q ss_pred C-CC-CchHhHHHHHHHHHh--CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH---HhcCcHHHHHHHHHHHHhcCCC
Q 042039 81 G-VQ-PSVVTFNVIMDELCK--NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF---CLTGKINRAEELFGSMESMGCK 153 (376)
Q Consensus 81 ~-~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~ 153 (376)
+ .. ....++.....++.. .+++++|...|++.++.. +.++..+..+..++ ...++.++|.+.+++..+.. |
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 11 134566666655554 457999999999999874 33566666665554 34577788999999988876 5
Q ss_pred CChhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchH
Q 042039 154 HDDVSYNILINGYCK----NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTY 229 (376)
Q Consensus 154 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (376)
.+..++..+...+.. .+++++|.+.+++.... .+.+..++..+...+...|++++|...+.++.+.. |.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 566677666655544 56788999999998886 34567888999999999999999999999998875 5566677
Q ss_pred HHHHHHHHhC-------------------CCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 230 NTFIDGLCKN-------------------GYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 230 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
..++.+|... +..+.|...++.+.... +.+...+..++..+...|++++|...|+++.+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7777665432 23567888888877665 335677888999999999999999999998875
Q ss_pred CCCCCH--HHHHHHHH-HHHccCChhHHHHHHHHHHHcCC-----------------------CCcHHHHHHHHHHHhhc
Q 042039 291 VLVADV--VTYNIMIH-GLCNDGQMDKAHDLFLDMEENAV-----------------------APNVIIFVTLIHGFVRI 344 (376)
Q Consensus 291 ~~~~~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~ 344 (376)
...+.. ..+..+.. .....|++++|+..|+++++... +.+..+|..+...|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN 443 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 332221 12333333 34578899999999888765421 22467889999999999
Q ss_pred CChhhHHHHHHHHHhCC-CCCchHH
Q 042039 345 NKPSKVIELLHKMKEKK-VMPDASI 368 (376)
Q Consensus 345 g~~~~a~~~~~~~~~~~-~~p~~~~ 368 (376)
|++++|++.|++..+.+ ..|+..+
T Consensus 444 g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 444 EKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHCC---------------------
T ss_pred CCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 99999999999998764 4455443
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=3.1e-20 Score=149.61 Aligned_cols=253 Identities=11% Similarity=0.011 Sum_probs=165.5
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCCh
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKM 102 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (376)
++.....|+++.|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345667788888888877765543111134556677788888888888776644 1345666777777777778888
Q ss_pred HHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 042039 103 DEASRLLDLMVQRDVRP-NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYRE 181 (376)
Q Consensus 103 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (376)
++|.+.+++++..+..| +...+..++.++...|++++|.+.+++ +.+..++..++.++.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877665333 455666777778888888888888776 45667777777888888888888888888
Q ss_pred HHHCCCCCCHhHHHHH----HHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC
Q 042039 182 MVSKGIKPTVVTYNTL----FLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC 257 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (376)
+.+.. |+.. ...+ +..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|...++++....+
T Consensus 156 ~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77752 3321 1222 222333466777777777766653 45566666666667777777777777776665542
Q ss_pred CchHHHHHHHHHHHHhCCChHH-HHHHHhccccc
Q 042039 258 ELDIQAYNCLIDGLCKSGRLEI-ALELFRSLPRR 290 (376)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 290 (376)
.++.++..++..+...|+.++ +.++++++.+.
T Consensus 232 -~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 -GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 256666666666666666654 45566665553
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=3.2e-20 Score=149.60 Aligned_cols=275 Identities=9% Similarity=0.033 Sum_probs=212.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcH
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKI 137 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (376)
++.....|++..|+..+++.....+.+.......+.++|...|+++.|...++. . .+|+..++..++..+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 445667899999999988765542222234556778899999999999986654 2 356677888889999999999
Q ss_pred HHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHH
Q 042039 138 NRAEELFGSMESMGC-KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEE 216 (376)
Q Consensus 138 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (376)
++|.+.++++...+. |.+...+..++.++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999887653 55677888888999999999999999987 46788899999999999999999999999
Q ss_pred HHhcCCCCCcchHHHHH----HHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCC
Q 042039 217 MQRDDVAADTSTYNTFI----DGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVL 292 (376)
Q Consensus 217 ~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (376)
+.+.. |+.. ...+. ..+...|++++|..+|+++.... +.++..++.++.++.+.|++++|...++++... .
T Consensus 156 ~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~ 230 (291)
T 3mkr_A 156 MQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-D 230 (291)
T ss_dssp HHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred HHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 98874 3332 22222 33445689999999999998875 458889999999999999999999999998876 4
Q ss_pred CCCHHHHHHHHHHHHccCChhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHH
Q 042039 293 VADVVTYNIMIHGLCNDGQMDK-AHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIE 352 (376)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 352 (376)
|.++.++..++..+...|+.++ +.++++++.+.. |+..... ....+.+.++++..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~~---d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFIK---EYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHH---HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHHH---HHHHHHHHHHHHHH
Confidence 6678899999999999999876 578889988753 4433222 22344455555544
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=2.7e-18 Score=150.98 Aligned_cols=340 Identities=8% Similarity=0.053 Sum_probs=238.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
-|..+|..++. +.+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++++.. .|+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 36778999998 478899999999999999875 778889999999999999999999999999886 35777777766
Q ss_pred HHH-HhCCChHHHHH----HHHHHHhc-CCCC-ChhhHHHHHHHHHh---------cCcHHHHHHHHHHHHhcCCCCChh
Q 042039 94 DEL-CKNGKMDEASR----LLDLMVQR-DVRP-NAFTYSTLMDGFCL---------TGKINRAEELFGSMESMGCKHDDV 157 (376)
Q Consensus 94 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~ 157 (376)
... ...|+.++|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++...........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35577666654 66666542 3333 35566666665544 677888888888877631111112
Q ss_pred hHHHHHHHH-------------HccCcHH---------------------------------------------------
Q 042039 158 SYNILINGY-------------CKNKEVE--------------------------------------------------- 173 (376)
Q Consensus 158 ~~~~l~~~~-------------~~~~~~~--------------------------------------------------- 173 (376)
.|....... .+.+++.
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222111100 0111122
Q ss_pred ---------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-------ccchH-------HHHHHHHHHHhcCCCCCcchHH
Q 042039 174 ---------EALSLYREMVSKGIKPTVVTYNTLFLGLFE-------IHQVE-------HALKLFEEMQRDDVAADTSTYN 230 (376)
Q Consensus 174 ---------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 230 (376)
.+..+|++++.. .+.+...|..++..+.+ .|+++ +|..++++.++.-.+.+...+.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 344455555553 23345666666666664 67776 8889998888632355677888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcccCCCchH-HHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHH-HHc
Q 042039 231 TFIDGLCKNGYIVEAVELFRTLGILKCELDI-QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHG-LCN 308 (376)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 308 (376)
.++..+.+.|++++|..+|+++....+. ++ ..|..++..+.+.|++++|..+|+++.+. .+.+...+...+.. +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHH
Confidence 8888888999999999999998876422 33 57888888888889999999999988775 23334444433333 335
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 309 DGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
.|++++|..+|+++++.. +.+...|..++..+.+.|+.++|..+|++....+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 899999999999988763 2367888888988999999999999999998764
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=7.8e-21 Score=156.47 Aligned_cols=268 Identities=13% Similarity=0.174 Sum_probs=138.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
+++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 45569999999999999999999999653 47779999999999999999999988877764 44577888999
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHH
Q 042039 94 DELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVE 173 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (376)
.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999888774 367779999999999999999999999966 46999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhc
Q 042039 174 EALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLG 253 (376)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (376)
+|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.+++|+.+++...
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999988 27889999999999999999996655432 2344446678889999999999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhC--CChHHHHHHHhcccccCCCC------CHHHHHHHHHHHHccCChhHHHHHH
Q 042039 254 ILKCELDIQAYNCLIDGLCKS--GRLEIALELFRSLPRRVLVA------DVVTYNIMIHGLCNDGQMDKAHDLF 319 (376)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (376)
... +.....|..+..+|++- ++..+.++.|..-.. ++| +...|..+...|...++++.|....
T Consensus 235 ~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 776 45678888888887764 455666666654332 333 4678899999999999999887643
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.7e-17 Score=144.65 Aligned_cols=342 Identities=11% Similarity=0.036 Sum_probs=247.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHH-hcCCChHHHHH----HHHHHHhc-CCCC-c
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGL-CHANDWNEAKR----LFFEMMDQ-GVQP-S 85 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~ 85 (376)
+-+...|..++..+.+.|++++|..+|+++.... |+...|..++... ...|+.+.|.+ +|++.+.. |..| +
T Consensus 43 P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~ 120 (530)
T 2ooe_A 43 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120 (530)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc
Confidence 4466789999999999999999999999999874 5777887777533 45577776655 67766553 4333 4
Q ss_pred hHhHHHHHHHHHh---------CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-------------HhcCcH------
Q 042039 86 VVTFNVIMDELCK---------NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF-------------CLTGKI------ 137 (376)
Q Consensus 86 ~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~------ 137 (376)
...|...+..... .|+++.|..+|++.++....+....|....... ...+++
T Consensus 121 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~ 200 (530)
T 2ooe_A 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRV 200 (530)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHH
Confidence 5566666665544 577888888888887631111012222111100 000111
Q ss_pred ------------------------------------------------------HHHHHHHHHHHhcCCCCChhhHHHHH
Q 042039 138 ------------------------------------------------------NRAEELFGSMESMGCKHDDVSYNILI 163 (376)
Q Consensus 138 ------------------------------------------------------~~a~~~~~~~~~~~~~~~~~~~~~l~ 163 (376)
+.+..+|+++.... |.++..|..++
T Consensus 201 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~ 279 (530)
T 2ooe_A 201 AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAA 279 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 24445666665543 55677788888
Q ss_pred HHHHc-------cCcHH-------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-ch
Q 042039 164 NGYCK-------NKEVE-------EALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADT-ST 228 (376)
Q Consensus 164 ~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 228 (376)
..+.+ .|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++++.. +.+. ..
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 358 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHH
Confidence 87775 78877 899999999873234468889999999999999999999999999863 2232 47
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHH-HHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHH
Q 042039 229 YNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDG-LCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLC 307 (376)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (376)
|..++..+.+.|+.++|..+|+++..... .+...+...+.. +...|+.++|..+|+++.+. .+.+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 88888888899999999999999987642 233444333333 34689999999999998876 4557889999999999
Q ss_pred ccCChhHHHHHHHHHHHcCC-CCc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 308 NDGQMDKAHDLFLDMEENAV-APN--VIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
+.|+.++|..+|+++...+. .|+ ...|...+......|+.+.+..+++++.+.
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998642 232 447888888888899999999999998764
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=2.4e-20 Score=153.56 Aligned_cols=282 Identities=12% Similarity=0.137 Sum_probs=136.4
Q ss_pred hcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHH
Q 042039 28 KEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASR 107 (376)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 107 (376)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6688999999999883 2358999999999999999999999653 477799999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 042039 108 LLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGI 187 (376)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 187 (376)
+++..++. .+++.+...++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88887774 4457788899999999999999998884 366679999999999999999999999976
Q ss_pred CCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHH
Q 042039 188 KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCL 267 (376)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (376)
..|..++.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 47899999999999999999999988 267899999999999999999976655432 244446678
Q ss_pred HHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHcc--CChhHHHHHHHHHHHcCCCC------cHHHHHHHHH
Q 042039 268 IDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCND--GQMDKAHDLFLDMEENAVAP------NVIIFVTLIH 339 (376)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 339 (376)
+..|.+.|++++|..+++...... +-....|..+..+|++- ++..+.++.|..-+ +++| +...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988663 55677888888888764 34444444443221 2333 4567999999
Q ss_pred HHhhcCChhhHHHH
Q 042039 340 GFVRINKPSKVIEL 353 (376)
Q Consensus 340 ~~~~~g~~~~a~~~ 353 (376)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 99999999988764
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=4.9e-19 Score=136.56 Aligned_cols=210 Identities=13% Similarity=0.005 Sum_probs=105.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
++++..+..+...+.+.|++++|+..|++..+.+ |.+...+..+..++...|++++|+..++++++..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4556666666677777777777777777766654 556666667777777777777777777776665332 45556666
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
..++...+ .. ... .....|++++|...+++..+.. |.+...+..++.++...|++
T Consensus 80 g~~~~~~~-------------~~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 80 SEAYVALY-------------RQ--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHH-------------HT--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhh-------------hh--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCh
Confidence 66665550 00 000 0001155555555555554443 33444555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 173 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
++|+..|+++++.. .+...+..+..++...|++++|...++++.+.. |.+...+..++.++...|++++|+..+++.
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555543 344455555555555555555555555555443 334444555555555555555555555443
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.5e-19 Score=139.35 Aligned_cols=226 Identities=12% Similarity=0.085 Sum_probs=147.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--Cc----hHhH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PS----VVTF 89 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 89 (376)
...|..+...+...|++++|+..|+++.+.. .+..++..++.++...|++++|.+.++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777777777788888888877777665 56677777777777777777777777777664211 11 4566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
..+..++...|++++|...++++.+.. |+. ..+...|++++|...++++.... +.+...+..++.++...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 677777777777777777777777642 332 33445566777777777766654 34555666667777777
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHH
Q 042039 170 KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELF 249 (376)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (376)
|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777766642 3345566666666666666666666666666553 334555666666666666666666666
Q ss_pred HHhccc
Q 042039 250 RTLGIL 255 (376)
Q Consensus 250 ~~~~~~ 255 (376)
+.+...
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665443
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=6.3e-19 Score=135.94 Aligned_cols=200 Identities=14% Similarity=0.014 Sum_probs=143.6
Q ss_pred CchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 042039 84 PSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILI 163 (376)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 163 (376)
++...+..+...+...|++++|...+++.++.. +.+...+..++.++...|++++|...++++.+.. |.+...+..++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 345556666666666666666666666666653 3345666666666666666666666666666654 45556666666
Q ss_pred HHHHcc-----------CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHH
Q 042039 164 NGYCKN-----------KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTF 232 (376)
Q Consensus 164 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (376)
.++... |++++|+..+++.++.. +.+...+..+..++...|++++|+..++++++.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 99999999999999863 3467889999999999999999999999999887 678899999
Q ss_pred HHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 233 IDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
+.++...|++++|+..++++.... +.++..+..++.++...|++++|...+++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999998876 34788899999999999999999999987653
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.2e-18 Score=138.42 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=116.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CC----hhhHHH
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCK--HD----DVSYNI 161 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 161 (376)
.+..+...+...|++++|...++++++.. .+..++..++.++...|++++|...++++...... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444445555555555555544443 34444445555555555555555555544433200 00 345555
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 042039 162 LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGY 241 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (376)
++.++...|++++|...++++.+. .|+. ..+...|++++|...++.+.... +.+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555566666666666555553 2221 22344455555666555555543 2334455555555666666
Q ss_pred HHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 042039 242 IVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLD 321 (376)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (376)
+++|...++++.... +.+...+..++..+...|++++|...++++.+. .+.+...+..++.++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666655443 224555556666666666666666666665544 233455566666666666666666666666
Q ss_pred HHH
Q 042039 322 MEE 324 (376)
Q Consensus 322 ~~~ 324 (376)
+.+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.84 E-value=3.4e-18 Score=137.07 Aligned_cols=250 Identities=15% Similarity=0.054 Sum_probs=176.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc--hHhHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS--VVTFNVI 92 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 92 (376)
|...+......+...|++++|+..|+++.+.. |.+..++..++.++...|++++|++.++++.+.+..++ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34556777788888889999999998888775 55667888888888888999999988888887432222 2347788
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
...+...|++++|...+++..+.. +.+..++..++.++...|++++|...++++.... +.+...+..++..+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888764 3356788888888888888888888888887764 55667777777333344588
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccc---hHHHHHHHHHHHhcC-CCCC------cchHHHHHHHHHhCCCH
Q 042039 173 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ---VEHALKLFEEMQRDD-VAAD------TSTYNTFIDGLCKNGYI 242 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~ 242 (376)
++|...++++.+.. +.+...+..+..++...++ +++|...++++.+.. ..|+ ..++..++..|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 88888888888752 3346677777777777777 777777777766542 1122 13566666777777777
Q ss_pred HHHHHHHHHhcccCCCchHHHHHHHHH
Q 042039 243 VEAVELFRTLGILKCELDIQAYNCLID 269 (376)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (376)
++|...++++....+. ++.....+..
T Consensus 238 ~~A~~~~~~al~~~p~-~~~a~~~l~~ 263 (272)
T 3u4t_A 238 VKADAAWKNILALDPT-NKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCcc-HHHHHHHhhh
Confidence 7777777777665422 4444444433
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.2e-17 Score=143.30 Aligned_cols=308 Identities=11% Similarity=-0.045 Sum_probs=228.8
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc--------CCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcC---
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ--------GVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRD--- 116 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 116 (376)
+.....|+.++..+...|++++|++.|++.++. ..+....+|..+..+|...|++++|...++++.+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 445678999999999999999999999988652 112245689999999999999999999999887521
Q ss_pred ---CCC-ChhhHHHHHHHHHh--cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH---HccCcHHHHHHHHHHHHHCCC
Q 042039 117 ---VRP-NAFTYSTLMDGFCL--TGKINRAEELFGSMESMGCKHDDVSYNILINGY---CKNKEVEEALSLYREMVSKGI 187 (376)
Q Consensus 117 ---~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 187 (376)
..+ ...++.....++.. .+++++|...|+++.... |.++..+..+..++ ...++.++|++.+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 111 24556666655554 457999999999999886 55666776666554 44677788999999988853
Q ss_pred CCCHhHHHHHHHHHHh----ccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHH
Q 042039 188 KPTVVTYNTLFLGLFE----IHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQA 263 (376)
Q Consensus 188 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 263 (376)
+.+..++..+...+.. .+++++|.+.+++..... +....++..++..|...|++++|...++++....+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3355666666555443 467889999999998875 667788999999999999999999999999887633 6777
Q ss_pred HHHHHHHHHhC-------------------CChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 264 YNCLIDGLCKS-------------------GRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 264 ~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
+..++.+|... +.+++|...++++... .+.+...+..++..+...|++++|+..|+++++
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-NDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 77777766432 2366788888887765 355677888999999999999999999999998
Q ss_pred cCCCCcHH--HHHHHHH-HHhhcCChhhHHHHHHHHHhC
Q 042039 325 NAVAPNVI--IFVTLIH-GFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 325 ~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~ 360 (376)
....+... .+..+.. .+...|++++|+..|++..+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 65443321 2333332 345789999999999998764
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.83 E-value=7.6e-18 Score=135.01 Aligned_cols=235 Identities=11% Similarity=-0.011 Sum_probs=151.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC--HhHHHHHHH
Q 042039 122 FTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT--VVTYNTLFL 199 (376)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 199 (376)
..+...+..+...|++++|...|+++.+.. |.+...+..++.++...|++++|+..++++.+.+..++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344555666666677777777776666654 34455666666677777777777777776666321111 223666667
Q ss_pred HHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHH
Q 042039 200 GLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEI 279 (376)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 279 (376)
.+...|++++|...++++.+.. +.+..++..++..+...|++++|+..++++.... +.+...+..++..+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776654 4455677777777777777777777777777664 3356666666633334457777
Q ss_pred HHHHHhcccccCCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHcC-CCCc------HHHHHHHHHHHhhcCChhh
Q 042039 280 ALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ---MDKAHDLFLDMEENA-VAPN------VIIFVTLIHGFVRINKPSK 349 (376)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 349 (376)
|...++++.+. .+.+...+..++.++...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++
T Consensus 161 A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777777665 34456666777777777776 777777777776531 1122 2456667777777788888
Q ss_pred HHHHHHHHHhC
Q 042039 350 VIELLHKMKEK 360 (376)
Q Consensus 350 a~~~~~~~~~~ 360 (376)
|.+.++++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888877754
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.82 E-value=5.5e-18 Score=141.00 Aligned_cols=249 Identities=9% Similarity=-0.007 Sum_probs=178.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAND-WNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
..+|+.+...+.+.|++++|+..++++++.+ |.+..+|..+..++...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567777778888888888888888888775 6677788888888888886 88888888888887544 6777888888
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc-cCcHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCK-NKEVE 173 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 173 (376)
++...|++++|+..|+++++.+ +-+...|..+..++...|++++|+..++++.... +.+..+|+.++.++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888764 3467778888888888888888888888888776 5677788888888877 55546
Q ss_pred HH-----HHHHHHHHHCCCCCCHhHHHHHHHHHHhcc--chHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCC------
Q 042039 174 EA-----LSLYREMVSKGIKPTVVTYNTLFLGLFEIH--QVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNG------ 240 (376)
Q Consensus 174 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 240 (376)
+| +..+++++... +-+...|..+...+...| ++++|.+.+.++ +.. +.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777777642 335667777777777766 577777777776 332 445566677777776653
Q ss_pred ---CHHHHHHHHHHh-cccCCCchHHHHHHHHHHHH
Q 042039 241 ---YIVEAVELFRTL-GILKCELDIQAYNCLIDGLC 272 (376)
Q Consensus 241 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 272 (376)
..++|+.+++++ .+.+ +.....|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 247777777777 4443 224455555554443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=9.9e-18 Score=134.56 Aligned_cols=247 Identities=9% Similarity=-0.074 Sum_probs=151.3
Q ss_pred cCCChHHHHHHHHHHHhcCCC---CchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHH
Q 042039 63 HANDWNEAKRLFFEMMDQGVQ---PSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINR 139 (376)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 139 (376)
..|++++|++.|+++++.... .+..++..++..+...|++++|...++++++.. +.+..++..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777665221 134566667777777777777777777777653 3356677777777777777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHh
Q 042039 140 AEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQR 219 (376)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (376)
|...|+++.... +.+..++..++.++...|++++|...++++.+. .|+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777664 445667777777777778888888888777764 33333333344444566777888887777666
Q ss_pred cCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCc---hHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCH
Q 042039 220 DDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCEL---DIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADV 296 (376)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (376)
.. +++... ..++..+...++.++|...++.+....... +...+..++..+...|++++|...|+++.... +.+
T Consensus 173 ~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~- 248 (275)
T 1xnf_A 173 KS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHN- 248 (275)
T ss_dssp HS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTT-
T ss_pred cC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chh-
Confidence 53 333333 345666667777777777777766543111 13556666666666666666666666665541 112
Q ss_pred HHHHHHHHHHHccCChhHHHHHH
Q 042039 297 VTYNIMIHGLCNDGQMDKAHDLF 319 (376)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~ 319 (376)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222234455555555555544
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.81 E-value=4.8e-18 Score=145.70 Aligned_cols=314 Identities=15% Similarity=0.077 Sum_probs=207.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDW---NEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
.+...+.+.|++++|+++|++..+.| ++.++..+...|...|++ ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667778888888888888887765 444555666677777777 7888888877753 5556666666555
Q ss_pred hCC-----ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-----------------------------------cCc-
Q 042039 98 KNG-----KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL-----------------------------------TGK- 136 (376)
Q Consensus 98 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~~~- 136 (376)
..+ ++++|...|++..+.|. ...+..+...|.. .+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 554 66788888888777542 1244444444443 332
Q ss_pred ---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---cHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc----cc
Q 042039 137 ---INRAEELFGSMESMGCKHDDVSYNILINGYCKNK---EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI----HQ 206 (376)
Q Consensus 137 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 206 (376)
.+.+..+++... ..++.++..+..+|...| +.++|+..|++..+.| +++...+..+...|... ++
T Consensus 158 ~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 158 DQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred ccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 222333333332 234448888899998899 8999999999998875 34555556777777655 68
Q ss_pred hHHHHHHHHHHHhcCCCCCcchHHHHHHH-H--HhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCC-----ChH
Q 042039 207 VEHALKLFEEMQRDDVAADTSTYNTFIDG-L--CKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSG-----RLE 278 (376)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 278 (376)
+++|...|++.. +.++..+..+... + ...+++++|+.+|++....+ ++..+..++..|. .| +++
T Consensus 233 ~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 3466777888877 4 56889999999999988766 6677888888887 45 999
Q ss_pred HHHHHHhcccccCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCChhhH
Q 042039 279 IALELFRSLPRRVLVADVVTYNIMIHGLCN----DGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR----INKPSKV 350 (376)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 350 (376)
+|...|++.. +.++.....+...|.. ..++++|...|++..+.| +......|...|.. ..++++|
T Consensus 305 ~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999987 3467788888888876 448999999999998865 34555666666664 4589999
Q ss_pred HHHHHHHHhCCCCC
Q 042039 351 IELLHKMKEKKVMP 364 (376)
Q Consensus 351 ~~~~~~~~~~~~~p 364 (376)
..+|++..+.|...
T Consensus 378 ~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 378 YVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHHTTCCHH
T ss_pred HHHHHHHHHCCCHH
Confidence 99999999887543
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=2.4e-17 Score=137.17 Aligned_cols=248 Identities=11% Similarity=0.069 Sum_probs=185.9
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc-HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK-INRAEELFGSMESMGCKHDDVSYNILIN 164 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (376)
...|..+..++...|++++|+..++++++.. +-+..+|..+..++...|+ +++|+..|+++.... |.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777777888888888888888888764 3357778888888888886 888888888888776 567778888888
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-CCCHH
Q 042039 165 GYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCK-NGYIV 243 (376)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 243 (376)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.+ +.+...+..++.++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888763 3367788888888888888888888888888775 5567778888888887 55546
Q ss_pred HH-----HHHHHHhcccCCCchHHHHHHHHHHHHhCC--ChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccC------
Q 042039 244 EA-----VELFRTLGILKCELDIQAYNCLIDGLCKSG--RLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDG------ 310 (376)
Q Consensus 244 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 310 (376)
+| +..++++....+. +...|..+..++...| ++++|.+.+.++ +. .+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4778887776533 6778888888888877 688888888877 33 4556777888888887764
Q ss_pred ---ChhHHHHHHHHH-HHcCCCC-cHHHHHHHHHHHh
Q 042039 311 ---QMDKAHDLFLDM-EENAVAP-NVIIFVTLIHGFV 342 (376)
Q Consensus 311 ---~~~~a~~~~~~~-~~~~~~~-~~~~~~~l~~~~~ 342 (376)
.+++|+++++++ .+. .| ....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 258888888888 554 34 3455666655543
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.80 E-value=8.1e-18 Score=132.43 Aligned_cols=203 Identities=12% Similarity=0.094 Sum_probs=125.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
.+...|..+...+...|++++|+..|+++.+.. +.+..++..++.++...|++++|.+.++++.+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 345667777777777788888888888777654 556777777777777778888888887777765332 566677777
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHH
Q 042039 94 DELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVE 173 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (376)
..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.... +.+...+..++.++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777777653 3356666677777777777777777777776654 445666667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 042039 174 EALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
+|...++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777766642 3345566666666666677777777776666553
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=2.8e-16 Score=125.90 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=156.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCCchHhHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCH----ANDWNEAKRLFFEMMDQGVQPSVVTFN 90 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (376)
++.++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777777777888888887777763 355667777777777 777777877777777754 566677
Q ss_pred HHHHHHHh----CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 91 VIMDELCK----NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL----TGKINRAEELFGSMESMGCKHDDVSYNIL 162 (376)
Q Consensus 91 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (376)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777654 55667777777777 777777777777777654 45566667
Q ss_pred HHHHHc----cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----ccchHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 042039 163 INGYCK----NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE----IHQVEHALKLFEEMQRDDVAADTSTYNTFID 234 (376)
Q Consensus 163 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 234 (376)
..+|.. .+++++|+..+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777766 777777777777777653 44566666666666 677777777777766653 2455666666
Q ss_pred HHHh----CCCHHHHHHHHHHhcccC
Q 042039 235 GLCK----NGYIVEAVELFRTLGILK 256 (376)
Q Consensus 235 ~~~~----~~~~~~a~~~~~~~~~~~ 256 (376)
+|.. .+++++|...++++...+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 667777777776666554
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.80 E-value=5.5e-17 Score=139.14 Aligned_cols=307 Identities=10% Similarity=-0.016 Sum_probs=211.7
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHH---HHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHH
Q 042039 31 FVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNE---AKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASR 107 (376)
Q Consensus 31 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 107 (376)
++++|+..|++..+.| +..++..|...|...+..++ +.+.+......| +......+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 4455555555555543 12244445555544443222 223333322222 23445555566666664444433
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc----CcHHHHHHHHH
Q 042039 108 LLDLMVQRDVRPNAFTYSTLMDGFCLTG---KINRAEELFGSMESMGCKHDDVSYNILINGYCKN----KEVEEALSLYR 180 (376)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 180 (376)
....+.+.-...++..+..+...|...| +.++|.+.|++..+.+ +++...+..+..+|... +++++|+..|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3332322212334458889999999999 9999999999999988 56666668888888765 79999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHH-H--HhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCC-----CHHHHHHHHHHh
Q 042039 181 EMVSKGIKPTVVTYNTLFLG-L--FEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNG-----YIVEAVELFRTL 252 (376)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~ 252 (376)
+.. . .+...+..+... + ...+++++|...|++..+.+ +...+..+...|. .| ++++|+.+|++.
T Consensus 242 ~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 987 3 356677777776 4 56899999999999998876 6678888888887 45 999999999998
Q ss_pred cccCCCchHHHHHHHHHHHHh----CCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHH
Q 042039 253 GILKCELDIQAYNCLIDGLCK----SGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCN----DGQMDKAHDLFLDMEE 324 (376)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 324 (376)
. .+ ++.....++..|.. ..++++|...|++..+.| +......+...|.. ..++.+|...|+...+
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8 33 67788888888876 449999999999988865 45567778888774 5689999999999998
Q ss_pred cCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 325 NAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
.|.. +.......+......++.++|..+.++..+.
T Consensus 387 ~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 387 QDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8733 3333333334444556777888888876653
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=3e-16 Score=125.73 Aligned_cols=223 Identities=10% Similarity=0.007 Sum_probs=125.1
Q ss_pred chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCChhhHH
Q 042039 85 SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL----TGKINRAEELFGSMESMGCKHDDVSYN 160 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (376)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+.+ ++.++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455556666666666666666666666522 34555556666666 666666666666666543 455566
Q ss_pred HHHHHHHc----cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----ccchHHHHHHHHHHHhcCCCCCcchHHHH
Q 042039 161 ILINGYCK----NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE----IHQVEHALKLFEEMQRDDVAADTSTYNTF 232 (376)
Q Consensus 161 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (376)
.+..+|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666542 44555555555555 566666666666555543 33445555
Q ss_pred HHHHHh----CCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHh----CCChHHHHHHHhcccccCCCCCHHHHHHHHH
Q 042039 233 IDGLCK----NGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCK----SGRLEIALELFRSLPRRVLVADVVTYNIMIH 304 (376)
Q Consensus 233 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (376)
...|.. .+++++|+..++++...+ ++..+..++..|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 555555555555555442 23445555555555 555555555555555432 2444455555
Q ss_pred HHHc----cCChhHHHHHHHHHHHc
Q 042039 305 GLCN----DGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 305 ~~~~----~~~~~~a~~~~~~~~~~ 325 (376)
.|.. .+++++|.+.|++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555 55555555555555554
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=1.2e-16 Score=126.52 Aligned_cols=200 Identities=10% Similarity=-0.050 Sum_probs=95.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
..+..++..+...|++++|.+.|+++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34444444555555555555555554443211 34444444555555555555555555554432 22344444455555
Q ss_pred HhcCcHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHH
Q 042039 132 CLTGKINRAEELFGSMESMGC-KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHA 210 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 210 (376)
...|++++|.++++++...+. +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544111 2233344445555555555555555555554431 22344445555555555555555
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 211 LKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
...++.+.+.. +.+...+..++..+...|++++|...++.+...
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555554432 233444445555555555555555555555443
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.1e-17 Score=142.05 Aligned_cols=302 Identities=14% Similarity=0.073 Sum_probs=163.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHhc----CCCC-
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPD----VVTYNSLIHGLCHANDWNEAKRLFFEMMDQ----GVQP- 84 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 84 (376)
+....+......+...|++++|+..|+++.+.+ +.+ ..++..++.++...|++++|...++++... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 444556666667777777777777777776653 223 245666677777777777777777765442 1111
Q ss_pred chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCc--------------------HHH
Q 042039 85 SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVR-PN----AFTYSTLMDGFCLTGK--------------------INR 139 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 139 (376)
...++..+...+...|++++|...+++.++.... ++ ..++..++..+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 1334555666666666666666666665543100 01 2244445555555555 444
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 042039 140 AEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIK-PTVVTYNTLFLGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (376)
|...+++..... ...+.. ....++..+...+...|++++|...+++..
T Consensus 166 A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 166 AVDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 444444433210 000000 012334444555555555555555555544
Q ss_pred hcCCC-C----CcchHHHHHHHHHhCCCHHHHHHHHHHhcccC----CCc-hHHHHHHHHHHHHhCCChHHHHHHHhccc
Q 042039 219 RDDVA-A----DTSTYNTFIDGLCKNGYIVEAVELFRTLGILK----CEL-DIQAYNCLIDGLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 219 ~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (376)
+.... + ...++..++..+...|++++|...++++.... ..+ ...++..++..+...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 32100 0 11245556666666666666666666654321 010 14456667777777777777777777655
Q ss_pred ccCC----C-CCHHHHHHHHHHHHccCChhHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHhhcCCh
Q 042039 289 RRVL----V-ADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN----AV-APNVIIFVTLIHGFVRINKP 347 (376)
Q Consensus 289 ~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 347 (376)
.... . ....++..++.++...|++++|...++++.+. +. .....++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3210 0 11446667777788888888888888776543 11 11244566666777766665
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=1e-17 Score=134.43 Aligned_cols=249 Identities=10% Similarity=-0.017 Sum_probs=196.4
Q ss_pred HHhcCChhHHHHHHHHhhhCCC---CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCCh
Q 042039 26 LCKEGFVDKAKALFLQMKGENI---NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKM 102 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (376)
....|++++|+..|+++.+... +.+..++..++.++...|++++|...|+++++..+. +..++..++.++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3456889999999999998632 235678999999999999999999999999987543 688999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 103 DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
++|...++++++.. +.+..++..++.++...|++++|...++++.... |+..........+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999874 4467889999999999999999999999999875 34344444555667789999999999888
Q ss_pred HHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCc
Q 042039 183 VSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVA---ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCEL 259 (376)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (376)
.... +++...+ .++..+...++.++|...+......... .+...+..++..+...|++++|...++++....+.
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 247 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH- 247 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-
Confidence 8752 3344444 4677778888889999999988765321 12577889999999999999999999999876522
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHH
Q 042039 260 DIQAYNCLIDGLCKSGRLEIALELF 284 (376)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (376)
+ +.....++...|++++|++.+
T Consensus 248 ~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T---CHHHHHHHHHHHHHHHC----
T ss_pred h---HHHHHHHHHHHHHHHhhHHHH
Confidence 3 223355677788888888776
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=2.4e-16 Score=122.38 Aligned_cols=203 Identities=9% Similarity=-0.040 Sum_probs=126.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
++..|..+...+...|++++|+..++++.+.. +.+..++..++.++...|++++|.+.++++...... +..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 34566666777777777777777777766654 445666667777777777777777777776665322 4556666666
Q ss_pred HHHhC-CChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 95 ELCKN-GKMDEASRLLDLMVQRDVRP-NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 95 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
.+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.... +.+...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66777 77777777777666621122 24556666666666666666666666666553 34455666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 173 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 666666666665421134455555555556666666666666665543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=3.7e-17 Score=128.66 Aligned_cols=202 Identities=12% Similarity=0.132 Sum_probs=137.3
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (376)
....|..++..+...|++++|...|+++++.... +...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4566777788888888888888888888775333 57777788888888888888888888888764 345677778888
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHH
Q 042039 130 GFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEH 209 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (376)
.+...|++++|.+.++++.+.. +.+...+..++.++...|++++|...++++.+. .+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887765 556777778888888888888888888887775 23356677777777778888888
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC
Q 042039 210 ALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK 256 (376)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (376)
|...++++.+.. +.+..++..++.++...|++++|...++++....
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888887777664 4456667777777777777777777777776654
No 52
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=3e-15 Score=137.93 Aligned_cols=296 Identities=13% Similarity=0.132 Sum_probs=169.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCChhhHHHHHHH---------------------------HhcC
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENI--NPDVVTYNSLIHG---------------------------LCHA 64 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~---------------------------~~~~ 64 (376)
-|+.--...+.+|...|.+.+|+++++++.-.+. ..+...-+.++.+ +...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISN 1062 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhC
Confidence 3444456677888999999999999999984431 1223333434433 3444
Q ss_pred CChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHH
Q 042039 65 NDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELF 144 (376)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 144 (376)
|.+++|..+|++.. . .....+.+ +-..+++++|.++.++. -++.+|..++.++...|++++|...|
T Consensus 1063 glyEEAf~IYkKa~----~-~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD----V-NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcC----C-HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44555555554431 0 11111111 11344445554444433 13456666666666666666666666
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC
Q 042039 145 GSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA 224 (376)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (376)
.+. .+...|..++.++.+.|++++|++.+...++.. +++.....++.+|.+.++++....+. . .+
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 443 345566666666666677767666666665542 22222334666666666655432221 1 23
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHH
Q 042039 225 DTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIH 304 (376)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (376)
+...+..++..|...|++++|..+|..+ ..|..++..+.+.|++++|.+.+++.. +..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHH
Confidence 3445555666666666666666666663 256666666666666666666666542 3456666666
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 042039 305 GLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMK 358 (376)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (376)
+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...
T Consensus 1259 acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666666655544332 2255566677778888888888888887765
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.78 E-value=6.5e-18 Score=143.54 Aligned_cols=266 Identities=12% Similarity=0.015 Sum_probs=161.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhC----CCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-C----c
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGE----NIN-PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ-P----S 85 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~ 85 (376)
..+|..+...+...|++++|...++++... +.+ ....++..++.++...|++++|...++++...... + .
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 357889999999999999999999987543 211 23567888999999999999999999998764111 1 1
Q ss_pred hHhHHHHHHHHHhCCC--------------------hHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCcHHHH
Q 042039 86 VVTFNVIMDELCKNGK--------------------MDEASRLLDLMVQR----DVRP-NAFTYSTLMDGFCLTGKINRA 140 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 140 (376)
..++..+...+...|+ +++|...+++..+. +..+ ...++..++..+...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 4478888889999999 88888888877652 1011 133566666777777777777
Q ss_pred HHHHHHHHhcCCC-CC----hhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhccchHHHHHHH
Q 042039 141 EELFGSMESMGCK-HD----DVSYNILINGYCKNKEVEEALSLYREMVSKGIK-PTVVTYNTLFLGLFEIHQVEHALKLF 214 (376)
Q Consensus 141 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 214 (376)
...+++....... ++ ..++..++.++...|++++|...+++....... ++.
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------- 263 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----------------------- 263 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc-----------------------
Confidence 7777766543210 11 115555666666666666666666665542100 000
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC-----CchHHHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 215 EEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC-----ELDIQAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
.....++..++..+...|++++|...++.+..... .....++..++.++...|++++|...+++..+
T Consensus 264 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 264 --------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00022344445555555555555555555432110 11134556666667777777777777766543
Q ss_pred c----CC-CCCHHHHHHHHHHHHccCCh
Q 042039 290 R----VL-VADVVTYNIMIHGLCNDGQM 312 (376)
Q Consensus 290 ~----~~-~~~~~~~~~l~~~~~~~~~~ 312 (376)
. +. +....++..+...+...|+.
T Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 336 ISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 2 10 11234455566666655554
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=5.2e-16 Score=122.80 Aligned_cols=200 Identities=13% Similarity=0.011 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
..|..+...+...|++++|+..|+++.+.. +.+..++..++.++...|++++|.+.++++.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 344555555555555555555555554443 334455555555555555555555555555544222 344455555555
Q ss_pred HhCCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRP-NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
...|++++|..+++++.+.+..| +...+..++.++...|++++|...++++.... +.+...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555411122 23444455555555555555555555555443 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 176 LSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
...++++.+. .+.+...+..+...+...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555555543 1233444445555555555555555555555443
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=5.9e-15 Score=136.09 Aligned_cols=290 Identities=13% Similarity=0.184 Sum_probs=174.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
+.+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|.+.+...++.. +++.....++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 455666666666666666666666443 245555566666666666666666666555542 222222235555
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
|++.+++++...+ ++ .++...+..++..|...|++++|..+|..+ ..|..++.++.+.|++++|
T Consensus 1177 YAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 6666555543222 11 234444555666666666666666666653 2466666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 176 LSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
++.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....
T Consensus 1241 IEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1241 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6666654 2445666666666666666666655443 2335556778888888889999999999888766
Q ss_pred CCCchHHHHHHHHHHHHhC--CChHHHHHHHhcccccCCCC------CHHHHHHHHHHHHccCChhHHHHHH--------
Q 042039 256 KCELDIQAYNCLIDGLCKS--GRLEIALELFRSLPRRVLVA------DVVTYNIMIHGLCNDGQMDKAHDLF-------- 319 (376)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~-------- 319 (376)
. +-....|..++..+.+. ++..++.++|..-.. +++ +...|..++..|.+.|+++.|....
T Consensus 1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 1386 (1630)
T ss_pred C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhh
Confidence 5 44566776677666654 355566666654332 222 4667888888999999999887322
Q ss_pred -----HHHHHcCCCCcHHHHHHHHHHHhhcC
Q 042039 320 -----LDMEENAVAPNVIIFVTLIHGFVRIN 345 (376)
Q Consensus 320 -----~~~~~~~~~~~~~~~~~l~~~~~~~g 345 (376)
...+. ...++..|...+..|...+
T Consensus 1387 ~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1387 KEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 12121 2346777777777777655
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=3.6e-16 Score=121.34 Aligned_cols=211 Identities=10% Similarity=0.008 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 042039 157 VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGL 236 (376)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (376)
..+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444444444444444444431 2233444444444444555555555554444432 23344455555555
Q ss_pred HhC-CCHHHHHHHHHHhcccCC-CchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhH
Q 042039 237 CKN-GYIVEAVELFRTLGILKC-ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDK 314 (376)
Q Consensus 237 ~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 314 (376)
... |++++|...++++..... +.+...+..++..+...|++++|...++++.+. .+.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHH
Confidence 555 555555555555544111 123455566666666666666666666665554 23345566666666666666666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHH
Q 042039 315 AHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMV 372 (376)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 372 (376)
|...++++.+.....+...+..+...+...|+.+++..+++.+.+. .|+......+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 6666666665432134455555555666666666666666666543 3444444433
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.76 E-value=3.6e-17 Score=139.29 Aligned_cols=236 Identities=14% Similarity=0.136 Sum_probs=121.4
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCch----HhHHHHHHHHHhCCChHHHHHHHHHHHhc----C-CCCCh
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSV----VTFNVIMDELCKNGKMDEASRLLDLMVQR----D-VRPNA 121 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 121 (376)
...+..+...+...|++++|+..|+++++.... +. ..+..+...+...|++++|...+++.++. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 334555666777777777777777777765332 22 35666667777777777777777766542 1 01124
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHccCc-----------------HHHHHHHH
Q 042039 122 FTYSTLMDGFCLTGKINRAEELFGSMESMG-----CKHDDVSYNILINGYCKNKE-----------------VEEALSLY 179 (376)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 179 (376)
.++..+...+...|++++|...++++.... .+....++..++.+|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 456666666777777777777776664431 11223355666666666666 66666666
Q ss_pred HHHHHC----CC-CCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhCCCHHHHHHHH
Q 042039 180 REMVSK----GI-KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVA-AD----TSTYNTFIDGLCKNGYIVEAVELF 249 (376)
Q Consensus 180 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 249 (376)
++..+. +. .....++..+...+...|++++|...+++..+.... .+ ...+..++..+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 554431 00 011234444555555555555555555554443100 00 113444444445555555555555
Q ss_pred HHhcccCCC-----chHHHHHHHHHHHHhCCChHHHHHHHhcc
Q 042039 250 RTLGILKCE-----LDIQAYNCLIDGLCKSGRLEIALELFRSL 287 (376)
Q Consensus 250 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (376)
+++...... ....++..++..+...|++++|...++++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444322100 00233444444444444444444444443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.76 E-value=5.2e-17 Score=138.30 Aligned_cols=270 Identities=13% Similarity=0.060 Sum_probs=132.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCChhh
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNA----FTYSTLMDGFCLTGKINRAEELFGSMESMG-----CKHDDVS 158 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 158 (376)
.+..+...+...|++++|...++++++.+ +.+. .++..++..+...|++++|...++++.... .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445555555566666666666555542 1122 345555555555666666666555554320 1122344
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHC----C-CCCCHhHHHHHHHHHHhccc-----------------hHHHHHHHHH
Q 042039 159 YNILINGYCKNKEVEEALSLYREMVSK----G-IKPTVVTYNTLFLGLFEIHQ-----------------VEHALKLFEE 216 (376)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 216 (376)
+..++.+|...|++++|...++++.+. + .+....++..+...+...|+ +++|...+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 555555556666666666655554432 0 01123445555555555555 5556555555
Q ss_pred HHhc----C-CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCC-----chHHHHHHHHHHHHhCCChHHHHHHHhc
Q 042039 217 MQRD----D-VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCE-----LDIQAYNCLIDGLCKSGRLEIALELFRS 286 (376)
Q Consensus 217 ~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (376)
..+. + .+....++..++..+...|++++|...++++...... .....+..++..+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4332 0 0112234555555555666666666555555332100 0112455555555666666666665555
Q ss_pred ccccCCC-----CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHhhcCChhhHHHHHHH
Q 042039 287 LPRRVLV-----ADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENA-----VAPNVIIFVTLIHGFVRINKPSKVIELLHK 356 (376)
Q Consensus 287 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (376)
+...... ....++..++..+...|++++|...++++.+.. ......++..+...|...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4432100 013445555555566666666666655554320 000123455555555566666666665555
Q ss_pred HH
Q 042039 357 MK 358 (376)
Q Consensus 357 ~~ 358 (376)
..
T Consensus 369 al 370 (411)
T 4a1s_A 369 HL 370 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.75 E-value=4.9e-16 Score=116.62 Aligned_cols=167 Identities=16% Similarity=0.084 Sum_probs=138.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
++..|..+...+.+.|++++|++.|++..+.+ |.+..++..++.++...|++++|...+..+...... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56778888889999999999999999888776 667888888888999999999999998888876443 5667777888
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE 174 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (376)
.+...++++.+...+.+..+.. +.+...+..++.++...|++++|.+.|+++.+.. |.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888999998888888764 4467788888888888899999999888888876 6677888888888888899999
Q ss_pred HHHHHHHHHHC
Q 042039 175 ALSLYREMVSK 185 (376)
Q Consensus 175 a~~~~~~~~~~ 185 (376)
|++.|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99888888874
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=4.7e-16 Score=131.01 Aligned_cols=296 Identities=13% Similarity=0.013 Sum_probs=150.1
Q ss_pred HHhcCChhHHHHHHHHhhhC--CCCCC--hhhHHHHHHH--HhcCCChHHHH-----------HHHHHHHhcCCCCch--
Q 042039 26 LCKEGFVDKAKALFLQMKGE--NINPD--VVTYNSLIHG--LCHANDWNEAK-----------RLFFEMMDQGVQPSV-- 86 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 86 (376)
+.+.+++++|..+++++.+. ....+ ...|..++.. ....++++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45788999999999988654 22223 3333433322 11223333343 555555432111010
Q ss_pred --HhHHHHHHHHHhCCChHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC------C
Q 042039 87 --VTFNVIMDELCKNGKMDEASRLLDLMVQR----DVRP-NAFTYSTLMDGFCLTGKINRAEELFGSMESMGC------K 153 (376)
Q Consensus 87 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~ 153 (376)
..+......+...|++++|...+++..+. +..+ ...++..++..+...|+++.|...+++..+... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 11222455667777888888888777653 1111 234666777777777777777777777654311 1
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhccchHHHHHHHHHHHhc-----CCC
Q 042039 154 HDDVSYNILINGYCKNKEVEEALSLYREMVSKGI-KPT----VVTYNTLFLGLFEIHQVEHALKLFEEMQRD-----DVA 223 (376)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 223 (376)
....++..++.+|...|++++|+..++++++... .++ ..++..++.++...|++++|...+++..+. ..+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1123566677777777777777777776654210 011 234555666666666666666666655541 112
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC----CCchHHHHHHHHHHHHhCCC---hHHHHHHHhcccccCCCCCH
Q 042039 224 ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK----CELDIQAYNCLIDGLCKSGR---LEIALELFRSLPRRVLVADV 296 (376)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~ 296 (376)
....++..++..+...|++++|...++++.... .+.....+..+...+...|+ +++|+.++++... .+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHH
Confidence 223445555555555555555555555543221 01111223334444444444 4444444444311 11122
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHH
Q 042039 297 VTYNIMIHGLCNDGQMDKAHDLFLDME 323 (376)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (376)
..+..++..|...|++++|...++++.
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444445555555555444443
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.74 E-value=9.7e-17 Score=132.57 Aligned_cols=281 Identities=14% Similarity=0.082 Sum_probs=157.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc---hHhHHHHHHHHHhCCChHHHHHHHHHHHhc----CCCC-Chhh
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS---VVTFNVIMDELCKNGKMDEASRLLDLMVQR----DVRP-NAFT 123 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 123 (376)
..+...+..+...|++++|...|+++++...... ...+..+...+...|++++|...+++..+. +..+ ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445556666666777777777777666532211 245556666666666666666666665432 1011 1334
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHccCc-------------HHHHHHHHHHHHHC
Q 042039 124 YSTLMDGFCLTGKINRAEELFGSMESMGCK-HD----DVSYNILINGYCKNKE-------------VEEALSLYREMVSK 185 (376)
Q Consensus 124 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~-------------~~~a~~~~~~~~~~ 185 (376)
+..++..+...|++++|...+++....... ++ ..++..++..+...|+ .+++...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 455555555566666666655555432100 01 1144444555555555 0000000
Q ss_pred CCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc----C-CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCC---
Q 042039 186 GIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD----D-VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKC--- 257 (376)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 257 (376)
+++|...+++.... + .+.....+..++..+...|++++|...++++.....
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 44444444333221 0 011123455556666666666666666666543210
Q ss_pred --CchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCC-C----CHHHHHHHHHHHHccCChhHHHHHHHHHHHcC----
Q 042039 258 --ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLV-A----DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENA---- 326 (376)
Q Consensus 258 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 326 (376)
......+..++..+...|++++|...+++....... . ...++..++..+...|++++|...++++.+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 111236677777778888888888888776532100 1 14567778888888888888888888876531
Q ss_pred C-CCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 327 V-APNVIIFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 327 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
. .....++..+...|...|++++|...+++..+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 112446777888888899999999999888764
No 62
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=151.49 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=123.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhh---CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKG---ENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
..+||++|++|++.|++++|.++|++|.+ .|..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCh-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC------hhhHHHHHHH
Q 042039 93 MDELCKNGKM-DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHD------DVSYNILING 165 (376)
Q Consensus 93 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 165 (376)
+.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ .-+..|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999887655433 333333333 1222222 3344556666
Q ss_pred HHccC
Q 042039 166 YCKNK 170 (376)
Q Consensus 166 ~~~~~ 170 (376)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66544
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.73 E-value=1.8e-16 Score=130.99 Aligned_cols=278 Identities=15% Similarity=0.100 Sum_probs=180.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHhc----CCCC-ch
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPD----VVTYNSLIHGLCHANDWNEAKRLFFEMMDQ----GVQP-SV 86 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 86 (376)
...+......+...|++++|+..|+++.+.. +.+ ...+..++..+...|++++|.+.++++... +..| ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 4456677788999999999999999998874 334 467889999999999999999999997653 1121 25
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCc--------------------HHHHH
Q 042039 87 VTFNVIMDELCKNGKMDEASRLLDLMVQRDVR-PN----AFTYSTLMDGFCLTGK--------------------INRAE 141 (376)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 141 (376)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 57888899999999999999999998764211 12 3377788888999999 88888
Q ss_pred HHHHHHHhc----C-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhccchHHHHHHHH
Q 042039 142 ELFGSMESM----G-CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIK-PTVVTYNTLFLGLFEIHQVEHALKLFE 215 (376)
Q Consensus 142 ~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (376)
..+++.... + .+....++..++..+...|++++|...+++..+.... ++.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------------ 219 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK------------------------ 219 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh------------------------
Confidence 888776432 1 0112235566666677777777777777666542100 000
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC----C-CchHHHHHHHHHHHHhCCChHHHHHHHhccccc
Q 042039 216 EMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK----C-ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRR 290 (376)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (376)
.....++..++..+...|++++|...++++.... . .....++..++..+...|++++|...++++...
T Consensus 220 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 220 -------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp -------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0001133444444445555555555554443211 0 011345566666677777777777776665432
Q ss_pred C----C-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 291 V----L-VADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 291 ~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
. . .....++..++..+...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 0 011345667777777788888888888777653
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=9.9e-16 Score=129.05 Aligned_cols=298 Identities=12% Similarity=0.002 Sum_probs=213.5
Q ss_pred HHhcCCChHHHHHHHHHHHhc--CC--CCchHhHHHHHHH--HHhCCChHHHH-----------HHHHHHHhcCCCCC--
Q 042039 60 GLCHANDWNEAKRLFFEMMDQ--GV--QPSVVTFNVIMDE--LCKNGKMDEAS-----------RLLDLMVQRDVRPN-- 120 (376)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~-- 120 (376)
.+.+.+++++|..+++++.+. .. .++...|..++.. ....+.++.+. ..++.+.....+.+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 356789999999999998764 22 2333444444332 22223344444 66666544311111
Q ss_pred --hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCC---ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC--CC---
Q 042039 121 --AFTYSTLMDGFCLTGKINRAEELFGSMESMG--CKH---DDVSYNILINGYCKNKEVEEALSLYREMVSKG--IK--- 188 (376)
Q Consensus 121 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--- 188 (376)
...+...+..+...|++++|...++++...- .+. ...++..++.+|...|++++|+..+++..+.. ..
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 1122336777889999999999999997641 111 34578899999999999999999999987631 11
Q ss_pred -CCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHhCCCHHHHHHHHHHhccc----CC-
Q 042039 189 -PTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA-----DTSTYNTFIDGLCKNGYIVEAVELFRTLGIL----KC- 257 (376)
Q Consensus 189 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~- 257 (376)
....++..+..++...|++++|...+.+..+..... ...++..++.+|...|++++|...++++... +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 124578888999999999999999999887652111 1247888999999999999999999998762 22
Q ss_pred CchHHHHHHHHHHHHhCCChHHHHHHHhcccccC----CCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCCc
Q 042039 258 ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV----LVADVVTYNIMIHGLCNDGQ---MDKAHDLFLDMEENAVAPN 330 (376)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~ 330 (376)
+....++..++.++...|++++|...+++..+.. .+.....+..+...+...|+ +++|+.++++... ....
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~ 338 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADL 338 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHH
Confidence 4457789999999999999999999999876531 12223345678888999999 7777777776621 1223
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 331 VIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
...+..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677889999999999999999999875
No 65
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=148.42 Aligned_cols=114 Identities=12% Similarity=0.169 Sum_probs=72.9
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhc---ccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHH
Q 042039 227 STYNTFIDGLCKNGYIVEAVELFRTLG---ILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMI 303 (376)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (376)
.+|+.++.+|++.|+.++|.++|..|. ..|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 456666666666666666666665543 23556666666666666666666666666666666666666666666666
Q ss_pred HHHHccCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 042039 304 HGLCNDGQM-DKAHDLFLDMEENAVAPNVIIFVTLIHG 340 (376)
Q Consensus 304 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (376)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 666666653 5566666666666666666666665543
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.72 E-value=8.6e-16 Score=132.61 Aligned_cols=217 Identities=14% Similarity=0.045 Sum_probs=168.1
Q ss_pred ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCCh-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHH
Q 042039 66 DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKM-DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELF 144 (376)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 144 (376)
+++++++.+++..... +.+...+..+...+...|++ ++|...|++.++.. +.+...+..++.+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677777777766542 23677778888888888888 88888888888764 335778888888888888888888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHcc---------CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--------cch
Q 042039 145 GSMESMGCKHDDVSYNILINGYCKN---------KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI--------HQV 207 (376)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 207 (376)
+++.+.. |+...+..+..++... |++++|+..++++++.. +.+...|..+..++... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888764 4567788888888888 88888888888888752 34577788888888887 888
Q ss_pred HHHHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 042039 208 EHALKLFEEMQRDDVA---ADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELF 284 (376)
Q Consensus 208 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (376)
++|...|+++.+.. + .+...+..++.+|...|++++|...|+++....+. +...+..+..++...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888764 3 56777888888888888888888888888776533 6677888888888888888888877
Q ss_pred hcccc
Q 042039 285 RSLPR 289 (376)
Q Consensus 285 ~~~~~ 289 (376)
.++..
T Consensus 316 ~~~~~ 320 (474)
T 4abn_A 316 GKTKP 320 (474)
T ss_dssp TTCCH
T ss_pred ccccC
Confidence 77643
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1e-14 Score=118.85 Aligned_cols=234 Identities=9% Similarity=0.011 Sum_probs=131.1
Q ss_pred hhhHHHHHHHHHhc----CCh----hHHHHHHHHhhhCCCCCChhhHHHHHHHHhc-------CCCh-------HHHHHH
Q 042039 16 TVTYNTIIDGLCKE----GFV----DKAKALFLQMKGENINPDVVTYNSLIHGLCH-------ANDW-------NEAKRL 73 (376)
Q Consensus 16 ~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 73 (376)
...|...+....+. ++. ++|+..|+++.... |.++..|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34566666654443 222 56667777776654 5566677666666543 3554 666666
Q ss_pred HHHHHh-cCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 042039 74 FFEMMD-QGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN-AF-TYSTLMDGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 74 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
|++.++ ..+ .+...|..++..+...|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|+++.+.
T Consensus 87 ~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 87 YERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 666666 222 24456666666666666666666666666664 232 32 5666666666666666666666666655
Q ss_pred CCCCChhhHHHHHHHHH-ccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC-CCC--Cc
Q 042039 151 GCKHDDVSYNILINGYC-KNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD-VAA--DT 226 (376)
Q Consensus 151 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~ 226 (376)
. +.+...|...+.... ..|++++|..+|+++++. .+.+...|..++..+.+.|++++|..+|++++... .+| ..
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 3 333334433332221 246666666666666554 22245555555566666666666666666665542 122 23
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 227 STYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
..+..++....+.|+.+.|..+++++...
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555555555566666666666555443
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.6e-14 Score=117.73 Aligned_cols=234 Identities=11% Similarity=-0.018 Sum_probs=156.4
Q ss_pred hHhHHHHHHHHHhC----CCh----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------cCcH-------HHHHHH
Q 042039 86 VVTFNVIMDELCKN----GKM----DEASRLLDLMVQRDVRPNAFTYSTLMDGFCL-------TGKI-------NRAEEL 143 (376)
Q Consensus 86 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 143 (376)
...|...+....+. ++. ++|...|++++... +.++..|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666654443 232 57777888887753 4456777777776653 4664 778888
Q ss_pred HHHHHh-cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 144 FGSMES-MGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT-VV-TYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
|++... .. |.+...|..++..+.+.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|+++.+.
T Consensus 87 ~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 87 YERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888877 33 455667777888888888888888888888774 343 33 6777777777778888888888887765
Q ss_pred CCCCCcchHHHHHHHHH-hCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccC-CCC--CH
Q 042039 221 DVAADTSTYNTFIDGLC-KNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV-LVA--DV 296 (376)
Q Consensus 221 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~ 296 (376)
. +.+...+...+.... ..|++++|..+|+++....+ .++..|..++..+.+.|++++|..+|+++.... .+| ..
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 4 334444443333322 25777788877777766542 256777777777777777788877777777642 233 35
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 297 VTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
..|..++......|+.++|..+++++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56667777777777777777777777765
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.70 E-value=2.3e-15 Score=129.94 Aligned_cols=216 Identities=12% Similarity=0.001 Sum_probs=180.4
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcH-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHH
Q 042039 101 KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKI-NRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLY 179 (376)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 179 (376)
.++++...++...... +.+...+..++..+...|++ ++|.+.|+++.+.. +.+..+|..++.+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567777777766653 44678888899999999999 99999999998876 567888999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhc---------cchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC--------CCH
Q 042039 180 REMVSKGIKPTVVTYNTLFLGLFEI---------HQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKN--------GYI 242 (376)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 242 (376)
+++++. .|+...+..+...+... |++++|...++++++.. +.+...+..++.+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999885 46678888889999998 99999999999998875 55678888899999888 889
Q ss_pred HHHHHHHHHhcccCCC--chHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 042039 243 VEAVELFRTLGILKCE--LDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFL 320 (376)
Q Consensus 243 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (376)
++|+..|+++....+. .+...+..++.+|...|++++|...|+++.+. .+.+...+..+..++...|++++|++.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998876531 47888999999999999999999999998876 45567788888899999999999887765
Q ss_pred HH
Q 042039 321 DM 322 (376)
Q Consensus 321 ~~ 322 (376)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=1.1e-14 Score=109.22 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=106.7
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (376)
++.+|..++.++...|++++|++.|++.++..+. +..++..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556667777777777777777777777665433 55666666667777777777777776666653 334555666666
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHH
Q 042039 130 GFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEH 209 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (376)
.+...++++.+...+.+..... +.+..++..++.++.+.|++++|++.|++.++.. +.+..++..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666667777776666666654 4455666666666666666666666666666642 2345556666666666666666
Q ss_pred HHHHHHHHHhc
Q 042039 210 ALKLFEEMQRD 220 (376)
Q Consensus 210 a~~~~~~~~~~ 220 (376)
|.+.|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666666554
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=129.47 Aligned_cols=251 Identities=16% Similarity=0.100 Sum_probs=149.8
Q ss_pred cccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhC-------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc--
Q 042039 10 VVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGE-------NINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ-- 80 (376)
Q Consensus 10 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 80 (376)
...+.+..++..+...+...|++++|+.+++++.+. ..+....++..++.++...|++++|...+++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 333445677888888888889999988888888763 22445667888888888888888888888887764
Q ss_pred ----CCCC-chHhHHHHHHHHHhCCChHHHHHHHHHHHhc------CCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 042039 81 ----GVQP-SVVTFNVIMDELCKNGKMDEASRLLDLMVQR------DVRP-NAFTYSTLMDGFCLTGKINRAEELFGSME 148 (376)
Q Consensus 81 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 148 (376)
+..| ...++..+...+...|++++|...++++.+. +..| ...++..++..+...|++++|..+++++.
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1122 3456777778888888888888888877753 1112 24556677777777888888888777776
Q ss_pred hc------C-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-------CCCCHhHHHHHHHHHHhccchHHHHHHH
Q 042039 149 SM------G-CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKG-------IKPTVVTYNTLFLGLFEIHQVEHALKLF 214 (376)
Q Consensus 149 ~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 214 (376)
.. + .+....++..++.++...|++++|...++++.+.. ..+........
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------- 243 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH----------------- 243 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-----------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-----------------
Confidence 54 1 12233466677777777777777777777776520 01110000000
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 215 EEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
...+......+...+.+.++...++...... +....++..++.+|...|++++|..+++++.+
T Consensus 244 -----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 -----------AEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----------HHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111112222333444445555555554332 23455666677777777777777777766554
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.68 E-value=3.1e-14 Score=119.66 Aligned_cols=310 Identities=10% Similarity=-0.022 Sum_probs=167.6
Q ss_pred cCCChhhHHHHHHHH--HhcCChhHHHHHHHHhhhC--CC--CCChhhHHHHHHHH--hcCCChHHHH---------HHH
Q 042039 12 CKPNTVTYNTIIDGL--CKEGFVDKAKALFLQMKGE--NI--NPDVVTYNSLIHGL--CHANDWNEAK---------RLF 74 (376)
Q Consensus 12 ~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~--~~~~~~~~a~---------~~~ 74 (376)
..|+...-+.+-+.| ...+++++|..+++++.+. .. ..+...|..++..- ...+.+..+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345666666666676 7889999999999887543 11 22233334443321 1112222222 555
Q ss_pred HHHHhcCCCCch----HhHHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCcHHHHHHHHH
Q 042039 75 FEMMDQGVQPSV----VTFNVIMDELCKNGKMDEASRLLDLMVQRDV-RPN----AFTYSTLMDGFCLTGKINRAEELFG 145 (376)
Q Consensus 75 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 145 (376)
+.+.....+.+. ..+......+...|++++|...+++..+... .++ ..++..++.+|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 554332111011 1223344556677888888888887765311 111 3456677777777788888777777
Q ss_pred HHHhcCC--C----CChhhHHHHHHHHHccCcHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhccchHHHHHHH
Q 042039 146 SMESMGC--K----HDDVSYNILINGYCKNKEVEEALSLYREMVSK----GIK-PTVVTYNTLFLGLFEIHQVEHALKLF 214 (376)
Q Consensus 146 ~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 214 (376)
+...... + ....++..++.+|...|++++|.+.+++.++. +.+ ....++..+..++...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7654310 0 12345667777777777777777777776652 111 11345566666666777777777777
Q ss_pred HHHHh-----cCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC----CCchHHHHHHHHHHHHhCCC---hHHHHH
Q 042039 215 EEMQR-----DDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK----CELDIQAYNCLIDGLCKSGR---LEIALE 282 (376)
Q Consensus 215 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~ 282 (376)
.+... .. +....++..++..+.+.|++++|...++++.... .+.....+..+...+...++ +.+|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66655 22 2224555666666666666666666666654321 11122334444445555555 555555
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 283 LFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
.+++... .+.....+..++..|...|++++|...|+++.+
T Consensus 325 ~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5554221 111223444555555566666666655555543
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=2.1e-14 Score=120.65 Aligned_cols=309 Identities=10% Similarity=-0.028 Sum_probs=216.3
Q ss_pred CCChhhHHHHHHHH--hcCCChHHHHHHHHHHHhc--CC--CCchHhHHHHHHH--HHhCCChHHHH---------HHHH
Q 042039 48 NPDVVTYNSLIHGL--CHANDWNEAKRLFFEMMDQ--GV--QPSVVTFNVIMDE--LCKNGKMDEAS---------RLLD 110 (376)
Q Consensus 48 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 110 (376)
.|+..+-..+-..| ...+++++|.++++++.+. .. .++...|..++.. ....+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44555555555555 7889999999999988653 12 2234444444432 11122322233 5666
Q ss_pred HHHhcCCCCC----hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 042039 111 LMVQRDVRPN----AFTYSTLMDGFCLTGKINRAEELFGSMESMGC-----KHDDVSYNILINGYCKNKEVEEALSLYRE 181 (376)
Q Consensus 111 ~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (376)
.+.....+.+ ...+...+..+...|++++|...++++..... +....++..++.+|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 6543211111 11334456677889999999999999876421 11245788899999999999999999999
Q ss_pred HHHCC--CC----CCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 042039 182 MVSKG--IK----PTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD-----VAADTSTYNTFIDGLCKNGYIVEAVELFR 250 (376)
Q Consensus 182 ~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (376)
..+.. .. ....++..+..++...|++++|...+.+..+.. ......++..++.+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 87631 11 125577889999999999999999999887641 11123467889999999999999999999
Q ss_pred Hhcc-----cCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccC----CCCCHHHHHHHHHHHHccCC---hhHHHHH
Q 042039 251 TLGI-----LKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRV----LVADVVTYNIMIHGLCNDGQ---MDKAHDL 318 (376)
Q Consensus 251 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 318 (376)
++.. .. +....++..++.++.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|+..
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9876 33 3347888999999999999999999999876532 22223456667777788888 7777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 319 FLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
+++... .......+..+...|...|++++|...+++..+
T Consensus 326 ~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 776321 122345677888999999999999999998864
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=7.6e-16 Score=125.82 Aligned_cols=135 Identities=17% Similarity=0.139 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-------CCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc------C
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ-------GVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR------D 116 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 116 (376)
+..++..++..+...|++++|..+++++.+. ..+....++..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556666667777777777777777766652 11223445556666666666666666666666543 1
Q ss_pred CCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 117 VRP-NAFTYSTLMDGFCLTGKINRAEELFGSMESM------G-CKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 117 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
..| ...++..++..+...|++++|...++++... + .+....++..++.++...|++++|+..++++.+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 2344555555555556666666555555432 1 011223444455555555555555555555443
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=9.8e-15 Score=130.99 Aligned_cols=167 Identities=13% Similarity=0.035 Sum_probs=152.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
-++.+|+.+...+.+.|++++|++.|++.++.. +.+..+|..++.+|.+.|++++|++.|+++++.... +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 347889999999999999999999999999886 667899999999999999999999999999997544 688999999
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHH
Q 042039 94 DELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVE 173 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (376)
.++...|++++|++.|++.++.. +-+...+..++.++...|++++|++.|+++.+.. |.+..++..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999874 3468899999999999999999999999999986 677889999999999999999
Q ss_pred HHHHHHHHHHH
Q 042039 174 EALSLYREMVS 184 (376)
Q Consensus 174 ~a~~~~~~~~~ 184 (376)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=5.9e-13 Score=111.67 Aligned_cols=302 Identities=13% Similarity=0.045 Sum_probs=212.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchH----hHHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCC----hh
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVV----TFNVIMDELCKNGKMDEASRLLDLMVQRDV-RPN----AF 122 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 122 (376)
.........+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344556677888999999999999988764332222 456677788899999999999999876321 112 22
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC--C--CH
Q 042039 123 TYSTLMDGFCLTGKINRAEELFGSMESM----GCK--H-DDVSYNILINGYCKNKEVEEALSLYREMVSKGIK--P--TV 191 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~ 191 (376)
++..+...+...|++++|...+++.... +.+ | ...++..+..++...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3567788889999999999999988653 211 1 2345677888999999999999999998874221 1 23
Q ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc-chHH-----HHHHHHHhCCCHHHHHHHHHHhcccCCCc---hHH
Q 042039 192 VTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADT-STYN-----TFIDGLCKNGYIVEAVELFRTLGILKCEL---DIQ 262 (376)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 262 (376)
.++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 46777888899999999999999988764212221 1121 23344778999999999999987654321 133
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccccc----CCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 042039 263 AYNCLIDGLCKSGRLEIALELFRSLPRR----VLVADV-VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTL 337 (376)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (376)
.+..++..+...|++++|...++.+... +.+++. ..+..+..++...|++++|...+++..... +. ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccH
Confidence 5677888899999999999999887543 111222 366677888899999999999999998752 11 112
Q ss_pred HHHHhhcCChhhHHHHHHHHHhCC
Q 042039 338 IHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
+..+...| +....+++.+....
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHHHcc--HHHHHHHHHHHhCC
Confidence 23344445 67778888887654
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=5.7e-13 Score=111.74 Aligned_cols=300 Identities=12% Similarity=0.011 Sum_probs=210.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCh----hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-Cc----hHh
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDV----VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ-PS----VVT 88 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 88 (376)
........+...|++++|...+++........+. .++..+...+...|++++|.+.+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445556777899999999999998876422222 25677788899999999999999998764211 11 233
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC----Chh
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQR----DVR--P-NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKH----DDV 157 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 157 (376)
+..+...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 567788899999999999999998763 211 2 23456678889999999999999999987653211 234
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-HhHHH-----HHHHHHHhccchHHHHHHHHHHHhcCCCCC---cch
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMVSKGIKPT-VVTYN-----TLFLGLFEIHQVEHALKLFEEMQRDDVAAD---TST 228 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 228 (376)
++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+.........+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677888999999999999999999876421111 11222 123447789999999999998876532111 124
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccc----CCCchH-HHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHH
Q 042039 229 YNTFIDGLCKNGYIVEAVELFRTLGIL----KCELDI-QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMI 303 (376)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (376)
+..+...+...|++++|...++.+... +..++. ..+..+..++...|+.++|...+++...... . ....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHH
Confidence 567788899999999999999987543 212222 3667778889999999999999998876511 1 1122
Q ss_pred HHHHccCChhHHHHHHHHHHHc
Q 042039 304 HGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
..+...| +....+++.+...
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHcc--HHHHHHHHHHHhC
Confidence 3344444 4556666666654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=8.5e-14 Score=104.32 Aligned_cols=166 Identities=17% Similarity=0.074 Sum_probs=121.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
...|..+...+...|++++|+..++++.+.. +.+..++..++.++...|++++|.+.++++.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3456677777888888888888888877664 55677777888888888888888888888777632 256677777777
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.... +.+..++..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 777788888888887777653 3456667777777777777777777777777664 45566777777777777777777
Q ss_pred HHHHHHHHHC
Q 042039 176 LSLYREMVSK 185 (376)
Q Consensus 176 ~~~~~~~~~~ 185 (376)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777776653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.63 E-value=1.1e-13 Score=107.55 Aligned_cols=210 Identities=12% Similarity=0.004 Sum_probs=163.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
+.|+..|......+...|++++|+..|++..+...+++...+..++.++...|++++|++.|++.++..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34678899999999999999999999999998863378888888999999999999999999999987544 67789999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 042039 93 MDELCKNGKMDEASRLLDLMVQRDVRPNA-------FTYSTLMDGFCLTGKINRAEELFGSMESMGCKH--DDVSYNILI 163 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 163 (376)
..++...|++++|...+++.++.. +.+. ..+..+...+...|++++|...|+++.+.. |. +..++..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999999874 3344 458888899999999999999999999875 44 467888888
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 042039 164 NGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFID 234 (376)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 234 (376)
.+|...|+ ..++.+...+ ..+...+.... ....+.+++|...+++..+.. |.+..+...+..
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 88865543 3445555442 22334443332 344567899999999998875 344444444433
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.61 E-value=7e-14 Score=125.48 Aligned_cols=168 Identities=14% Similarity=0.070 Sum_probs=151.0
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL 127 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (376)
|.+..+|+.++.++.+.|++++|++.|+++++.... +..++..+..++.+.|++++|+..|++.++.+ +-+...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456789999999999999999999999999997544 67899999999999999999999999999874 3458899999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccch
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQV 207 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (376)
+.++...|++++|.+.|+++.+.. +.+..++..++.+|...|++++|+..|+++++.. +-+...+..++.++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 999999999999999999999886 6778899999999999999999999999999863 33588899999999999999
Q ss_pred HHHHHHHHHHHh
Q 042039 208 EHALKLFEEMQR 219 (376)
Q Consensus 208 ~~a~~~~~~~~~ 219 (376)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887755
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=2.7e-13 Score=105.36 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=163.6
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTL 127 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 127 (376)
+.++..+...+..+...|++++|++.|++.++...+++...+..+..++...|++++|...+++.++.. +.+..++..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346788999999999999999999999999998654677888889999999999999999999999874 3357889999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC---HhHHHHH
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDD-------VSYNILINGYCKNKEVEEALSLYREMVSKGIKPT---VVTYNTL 197 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 197 (376)
+.++...|++++|...+++..... |.+. ..|..++.++...|++++|+..|+++++. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999875 4555 56888899999999999999999999985 444 5677777
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHH
Q 042039 198 FLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDG 270 (376)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (376)
..++...|+ ..++.+.... ..+...+... .....+.+++|...++++.+..+. +..+...+...
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 777765543 3445554443 2233333322 234456789999999999887633 55555555443
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=2.4e-11 Score=108.04 Aligned_cols=344 Identities=8% Similarity=-0.009 Sum_probs=214.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC---hHHHHHHHHHHHhcCC-CCchHhH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAND---WNEAKRLFFEMMDQGV-QPSVVTF 89 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 89 (376)
-|..+|..++..+.+.+.++.+..+|+++...- |.....|...+..-.+.+. ++.+..+|++.+.... .|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 467889999999999999999999999998774 7788889988988888888 9999999999988631 3688888
Q ss_pred HHHHHHHHhCCCh--------HHHHHHHHHHHh-cCC-CCC-hhhHHHHHHHHH---------hcCcHHHHHHHHHHHHh
Q 042039 90 NVIMDELCKNGKM--------DEASRLLDLMVQ-RDV-RPN-AFTYSTLMDGFC---------LTGKINRAEELFGSMES 149 (376)
Q Consensus 90 ~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 149 (376)
...+....+.++. +...++|+..+. .|. .++ ...|...+.... ..++++.+..+|+++..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877765555443 334466766654 344 343 456666665433 23345667777777664
Q ss_pred cCCCCChhhHH---------------------------------------------------------------------
Q 042039 150 MGCKHDDVSYN--------------------------------------------------------------------- 160 (376)
Q Consensus 150 ~~~~~~~~~~~--------------------------------------------------------------------- 160 (376)
........+|.
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 31111111111
Q ss_pred ----HHHHHHHccC-------cHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHH-HHHHHHHhcCCCCCcch
Q 042039 161 ----ILINGYCKNK-------EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHAL-KLFEEMQRDDVAADTST 228 (376)
Q Consensus 161 ----~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 228 (376)
..+..--..+ ..+.+..+|++++.. .+-....|...+..+...|+.+.|. +++++..... |.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 1111100000 011223344444443 2334555555555566677777775 8888877643 445555
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcccCC---------Cc------------hHHHHHHHHHHHHhCCChHHHHHHHhcc
Q 042039 229 YNTFIDGLCKNGYIVEAVELFRTLGILKC---------EL------------DIQAYNCLIDGLCKSGRLEIALELFRSL 287 (376)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (376)
+...+....+.|+++.|.++|+++..... .| ...+|...+....+.|..+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66677777788888888888888764310 02 2335777777777778888888888887
Q ss_pred cccCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 042039 288 PRRVLVADVVTYNIMIHGLCND-GQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKK 361 (376)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (376)
.+.........|...+..-.+. ++.+.|..+|+..++. .+.+...|...+......|+.+.|..+|++..+..
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6541112234444333333333 4478888888887765 23355566667776677788888888888877654
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=6e-13 Score=99.64 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=120.7
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+..++..+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44566677777788888888888877766532 256677777777888888888888888877763 3356677777777
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHH
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHA 210 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 210 (376)
+...|++++|.+.++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 778888888888888777664 4566677777777777888888888887777652 33566677777777777777777
Q ss_pred HHHHHHHHhc
Q 042039 211 LKLFEEMQRD 220 (376)
Q Consensus 211 ~~~~~~~~~~ 220 (376)
...++.+.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777776654
No 84
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=2e-11 Score=108.46 Aligned_cols=220 Identities=11% Similarity=-0.019 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHH
Q 042039 139 RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEAL-SLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEM 217 (376)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (376)
.+..+|+++.... +.....|...+..+...|+.++|. .+|++.... ++.+...|...+......|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455677666653 567778888888888889999997 999999875 5556777788888888999999999999998
Q ss_pred HhcCC---------CCC------------cchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhC-C
Q 042039 218 QRDDV---------AAD------------TSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKS-G 275 (376)
Q Consensus 218 ~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 275 (376)
+.... .|+ ..+|...+....+.|..+.|..+|.++...........|...+..-.+. +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 76410 121 2357777777788899999999999997651122344555544444454 4
Q ss_pred ChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhhcCChhhHHHH
Q 042039 276 RLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAP--NVIIFVTLIHGFVRINKPSKVIEL 353 (376)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 353 (376)
+.+.|.++|+..++. .+.+...+...+......|+.+.|..+|++++.....+ ....|...+..-.+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 599999999999887 56677777888888888999999999999999864322 456788888888889999999999
Q ss_pred HHHHHhCC
Q 042039 354 LHKMKEKK 361 (376)
Q Consensus 354 ~~~~~~~~ 361 (376)
.+++.+.-
T Consensus 564 ~~R~~~~~ 571 (679)
T 4e6h_A 564 EKRFFEKF 571 (679)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99998763
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.53 E-value=5.7e-12 Score=101.68 Aligned_cols=209 Identities=12% Similarity=-0.014 Sum_probs=124.0
Q ss_pred ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCcHHHH
Q 042039 66 DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR----DVRPN-AFTYSTLMDGFCLTGKINRA 140 (376)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 140 (376)
++++|...|+++ +..+...|++++|...|.+..+. +.++. ..++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33566778888888877777653 21111 45677777777778888888
Q ss_pred HHHHHHHHhcCCC---C--ChhhHHHHHHHHHcc-CcHHHHHHHHHHHHHCCCCC-C----HhHHHHHHHHHHhccchHH
Q 042039 141 EELFGSMESMGCK---H--DDVSYNILINGYCKN-KEVEEALSLYREMVSKGIKP-T----VVTYNTLFLGLFEIHQVEH 209 (376)
Q Consensus 141 ~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 209 (376)
...+++....... + ...++..++.+|... |++++|+..|++.++..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777776553210 0 134667777777775 88888888777776531100 1 3456666777777777777
Q ss_pred HHHHHHHHHhcCCCCCcc------hHHHHHHHHHhCCCHHHHHHHHHHhcccCCCc-h---HHHHHHHHHHHH--hCCCh
Q 042039 210 ALKLFEEMQRDDVAADTS------TYNTFIDGLCKNGYIVEAVELFRTLGILKCEL-D---IQAYNCLIDGLC--KSGRL 277 (376)
Q Consensus 210 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~ 277 (376)
|...++++.+........ .+..++.++...|++++|...+++.....+.. + ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 777777776653222111 35556666777777777777777765543210 0 112333444443 34556
Q ss_pred HHHHHHHhcccc
Q 042039 278 EIALELFRSLPR 289 (376)
Q Consensus 278 ~~a~~~~~~~~~ 289 (376)
++|+..|+.+..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 666666666544
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=1.9e-13 Score=109.85 Aligned_cols=229 Identities=16% Similarity=0.077 Sum_probs=162.3
Q ss_pred HHhcCChhHHHHHHHHhhhC-------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc------CCCC-chHhHHH
Q 042039 26 LCKEGFVDKAKALFLQMKGE-------NINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ------GVQP-SVVTFNV 91 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ 91 (376)
....|++++|+..+++..+. +.+....++..++.++...|++++|...++++++. +..| ...++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567777777777776552 22345778999999999999999999999998865 2222 3567888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhc------C-CCCChh
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQR------DV-RPNAFTYSTLMDGFCLTGKINRAEELFGSMESM------G-CKHDDV 157 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 157 (376)
+..++...|++++|...++++++. .. +....++..++..+...|++++|...++++... + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998864 11 223667888999999999999999999998765 1 133456
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHC-------CCCCC-HhHHHHHHHHHHhccchHHHH------HHHHHHHhcCCC
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMVSK-------GIKPT-VVTYNTLFLGLFEIHQVEHAL------KLFEEMQRDDVA 223 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~a~------~~~~~~~~~~~~ 223 (376)
++..++.++...|++++|...++++.+. ...+. ...+..+.......+....+. ..+..... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7889999999999999999999998763 11222 333333333333333322222 22221111 112
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 224 ADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
....++..++.+|...|++++|..+++++.+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34557888999999999999999999987653
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.51 E-value=1.1e-12 Score=105.36 Aligned_cols=159 Identities=19% Similarity=0.130 Sum_probs=120.4
Q ss_pred hcCCChHHHHHHHHHHHhc-------CCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc------CCCC-ChhhHHHH
Q 042039 62 CHANDWNEAKRLFFEMMDQ-------GVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR------DVRP-NAFTYSTL 127 (376)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 127 (376)
...|++++|+..|++.++. ..+....++..+...+...|++++|...++++++. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777777652 22224667888999999999999999999998864 2122 35678889
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC------CCCC-CHhH
Q 042039 128 MDGFCLTGKINRAEELFGSMESMG-------CKHDDVSYNILINGYCKNKEVEEALSLYREMVSK------GIKP-TVVT 193 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 193 (376)
+.++...|++++|...++++.... .+....++..++.++...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999887641 1334567888899999999999999999988764 1122 3566
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 194 YNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
+..+..++...|++++|...++++.+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888889999888888887653
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=4e-12 Score=100.89 Aligned_cols=103 Identities=10% Similarity=-0.021 Sum_probs=80.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--CchH
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPD---VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PSVV 87 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 87 (376)
+.++..+..+...+.+.|++++|+..|+++.+.. |.+ ..++..++.++...|++++|+..|+++++..+. ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777888888888999999999999888764 334 677888888899999999999999998886331 1245
Q ss_pred hHHHHHHHHHh--------CCChHHHHHHHHHHHhcC
Q 042039 88 TFNVIMDELCK--------NGKMDEASRLLDLMVQRD 116 (376)
Q Consensus 88 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~ 116 (376)
.+..+..++.. .|++++|...|+++++..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 67777778888 888888888888888763
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=6.1e-12 Score=101.52 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=151.7
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc----CCCCc-hHhHHHHHHHHHhCCChHHH
Q 042039 31 FVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ----GVQPS-VVTFNVIMDELCKNGKMDEA 105 (376)
Q Consensus 31 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 105 (376)
++++|...|++. +..|...|++++|.+.|++.... +.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 45677889999999999888764 22222 45788899999999999999
Q ss_pred HHHHHHHHhcCCC-CC----hhhHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHccCcHHH
Q 042039 106 SRLLDLMVQRDVR-PN----AFTYSTLMDGFCLT-GKINRAEELFGSMESMGCKH-D----DVSYNILINGYCKNKEVEE 174 (376)
Q Consensus 106 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 174 (376)
+..+++.++.... .+ ..++..++.+|... |++++|...|++........ + ..++..++.++...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999888764211 01 35778889999996 99999999999987653111 1 3568889999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------hHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC-C---cchHHHHHHHHH--hCCCH
Q 042039 175 ALSLYREMVSKGIKPTV------VTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAA-D---TSTYNTFIDGLC--KNGYI 242 (376)
Q Consensus 175 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~ 242 (376)
|+..|++..+....... ..+..+..++...|+++.|...+++..+..... + ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999985322221 156778888999999999999999987653111 1 112444555554 45679
Q ss_pred HHHHHHHHHhccc
Q 042039 243 VEAVELFRTLGIL 255 (376)
Q Consensus 243 ~~a~~~~~~~~~~ 255 (376)
++|+..|+.+...
T Consensus 257 ~~A~~~~~~~~~l 269 (292)
T 1qqe_A 257 SEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHTTSSCC
T ss_pred HHHHHHhccCCcc
Confidence 9999999887654
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=2.8e-12 Score=97.94 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHH----------------HHHHHhcCCChHHHHHHHHHHHh
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNS----------------LIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
+..+......+...|++++|+..|++..+.+ |.+...|.. ++.++...|++++|+..|++.++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344555566777788888888888777654 334455554 45555555555555555555554
Q ss_pred cCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 042039 80 QGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL 133 (376)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (376)
..+. +...+..+..++...|++++|...|+++++.. +.+..++..++.+|..
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4222 34444455555555555555555555555442 2234444444444433
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.47 E-value=7.5e-12 Score=99.32 Aligned_cols=171 Identities=9% Similarity=0.004 Sum_probs=114.2
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc---hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCC-C-CChh
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS---VVTFNVIMDELCKNGKMDEASRLLDLMVQRDV-R-PNAF 122 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~ 122 (376)
+.+...+..++..+...|++++|+..|+++++..+. + ...+..+..++...|++++|...|+++++... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456778888899999999999999999999886433 3 56788888899999999999999999988632 1 1245
Q ss_pred hHHHHHHHHHh--------cCcHHHHHHHHHHHHhcCCCCChhhH-----------------HHHHHHHHccCcHHHHHH
Q 042039 123 TYSTLMDGFCL--------TGKINRAEELFGSMESMGCKHDDVSY-----------------NILINGYCKNKEVEEALS 177 (376)
Q Consensus 123 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~ 177 (376)
.+..++.++.. .|++++|...|+++.... |.+.... ..++.+|...|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 67778888888 899999999999988764 3333333 334555555555555555
Q ss_pred HHHHHHHCCCCC--CHhHHHHHHHHHHhc----------cchHHHHHHHHHHHhc
Q 042039 178 LYREMVSKGIKP--TVVTYNTLFLGLFEI----------HQVEHALKLFEEMQRD 220 (376)
Q Consensus 178 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 220 (376)
.|+++++..... ....+..+..++... |++++|...++++.+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 555555431110 123444444444433 4445555555554443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.46 E-value=9.6e-11 Score=92.77 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 042039 105 ASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGC-KHDDVSYNILINGYCKNKEVEEALSLYREMV 183 (376)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (376)
+...+++.+..+ .++..++..++.++...|++++|++++.+....+. ..+...+..++.++.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444445556666666666666666666544431 1344455556666666666666666666665
Q ss_pred HCCCCC-----CHhHHHHHHHHHH--hcc--chHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 042039 184 SKGIKP-----TVVTYNTLFLGLF--EIH--QVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGI 254 (376)
Q Consensus 184 ~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (376)
+. .| +..+...++.++. ..| ++..|..+|+++... .|+......+..++.+.|++++|...++.+..
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 33 2344444444422 122 556666666665443 22211222222255555666666665554433
Q ss_pred cC---------CCchHHHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 255 LK---------CELDIQAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 255 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
.. -+.++.++..++......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 20 02244444444444444444 45555555544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.44 E-value=2.4e-12 Score=116.10 Aligned_cols=173 Identities=14% Similarity=-0.044 Sum_probs=112.5
Q ss_pred hcCCChHHHHHHHHHHH--------hcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 042039 62 CHANDWNEAKRLFFEMM--------DQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL 133 (376)
Q Consensus 62 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (376)
...|++++|++.+++++ +.. +.+...+..+..++...|++++|...++++++.+ +.+...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777776 332 2245566666777777777777777777777653 3356667777777777
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHH
Q 042039 134 TGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKL 213 (376)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (376)
.|++++|.+.|+++.+.. |.+...+..++.++.+.|++++ +..|+++++.+ +.+...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776665 4556667777777777777777 77777776642 23456677777777777777777777
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhCC
Q 042039 214 FEEMQRDDVAADTSTYNTFIDGLCKNG 240 (376)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (376)
|+++.+.+ +.+...+..++.++...+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccC
Confidence 77766653 334555666666655543
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.43 E-value=1.6e-11 Score=93.71 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=23.7
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 162 LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
++.++.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|+++++.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444444444444444444444431 113333444444444444444444444444433
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.43 E-value=1.1e-12 Score=94.41 Aligned_cols=143 Identities=7% Similarity=-0.034 Sum_probs=82.7
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChH
Q 042039 24 DGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMD 103 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (376)
..+...|++++|++.++...... +.+...+..+..+|.+.|++++|++.|++.++..+. +..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34445566666666666665442 333445556666666666666666666666665333 5566666666666666666
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHccC
Q 042039 104 EASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEEL-FGSMESMGCKHDDVSYNILINGYCKNK 170 (376)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (376)
+|...|++.++.+ +-+..++..++.++.+.|++++|.+. ++++.+.. |.++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 6666666666653 22455666666666666666554433 45555554 445555555555555544
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.43 E-value=5.8e-10 Score=89.22 Aligned_cols=223 Identities=10% Similarity=-0.015 Sum_probs=148.1
Q ss_pred HhcCC-hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHhcCCCCchHhHHHHHHHH----HhC
Q 042039 27 CKEGF-VDKAKALFLQMKGENINPDVVTYNSLIHGLCHAN--DWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL----CKN 99 (376)
Q Consensus 27 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 99 (376)
.+.|. .++|+++++.++..+ |.+..+|+.-..++...+ ++++++++++.++..+++ +..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 34444 468999999988876 667788888888888888 899999999998887555 566666555544 444
Q ss_pred ---CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHH--HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc---
Q 042039 100 ---GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKIN--RAEELFGSMESMGCKHDDVSYNILINGYCKNKE--- 171 (376)
Q Consensus 100 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 171 (376)
+++++++.+++.+++.. +-+..+|..-..++...|.++ ++.+.++++.+.+ +.+..+|+....+....+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 67888888888888765 446777777777777777777 7788888887766 5666777766666666665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHH-HHHHHHHHHhcC--CCCCcchHHHHHHHHHhCCCHHHH
Q 042039 172 ---VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEH-ALKLFEEMQRDD--VAADTSTYNTFIDGLCKNGYIVEA 245 (376)
Q Consensus 172 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 245 (376)
++++++.+++++... +-+...|..+...+.+.|+... +..+..++...+ .+.++..+..++.++.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 667777777766652 3356666666666655555333 333444443321 123444555556666666666666
Q ss_pred HHHHHHhcc
Q 042039 246 VELFRTLGI 254 (376)
Q Consensus 246 ~~~~~~~~~ 254 (376)
.++++.+..
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666553
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.42 E-value=9.6e-12 Score=112.18 Aligned_cols=186 Identities=9% Similarity=-0.071 Sum_probs=146.0
Q ss_pred HhCCChHHHHHHHHHHH--------hcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 042039 97 CKNGKMDEASRLLDLMV--------QRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCK 168 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (376)
...|++++|++.+++.+ +.. +.+...+..++.++...|++++|...|+++.+.. +.+...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788999999999888 432 3456778888888999999999999999988775 6677888889999999
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHH
Q 042039 169 NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVEL 248 (376)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (376)
.|++++|+..|+++++.. +.+...+..+..++...|++++ ...|+++++.+ +.+...+..++.++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988863 3357778888888999999999 99999888875 55677888889999999999999999
Q ss_pred HHHhcccCCCchHHHHHHHHHHHHhCCC--------hHHHHHHHhccc
Q 042039 249 FRTLGILKCELDIQAYNCLIDGLCKSGR--------LEIALELFRSLP 288 (376)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~ 288 (376)
|+++...+.. +...+..++.++...++ +++|.+.+..+.
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9998877532 56777777777765444 556666665553
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=1.3e-10 Score=92.01 Aligned_cols=244 Identities=9% Similarity=-0.014 Sum_probs=157.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcH
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKI 137 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (376)
++-..-.|++..++.-.. +............+.++++..|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 344555788877776332 222222233444456778877776641 11233333444333333 222
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhccchHHHHHHHHH
Q 042039 138 NRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGI-KPTVVTYNTLFLGLFEIHQVEHALKLFEE 216 (376)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (376)
|...|++....+ +++...+..++.++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 45566667888888889999999999998877543 23567778888889999999999999998
Q ss_pred HHhcCCCC-----CcchHHHHHHHH--HhCC--CHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcc
Q 042039 217 MQRDDVAA-----DTSTYNTFIDGL--CKNG--YIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSL 287 (376)
Q Consensus 217 ~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (376)
|.+. .| +..+...++.++ ...| ++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 34 355566666553 3334 888899999998655 333222223333788889999999988865
Q ss_pred cccC---------CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 288 PRRV---------LVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 288 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
.+.. .+.++.++..++......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 5421 14466777666666666676 788888888875
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.40 E-value=8e-11 Score=90.03 Aligned_cols=175 Identities=11% Similarity=-0.022 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcc----chHHHHHHHH
Q 042039 140 AEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH----QVEHALKLFE 215 (376)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 215 (376)
|.++|++..+.+ ++.++..+...|...+++++|+..|++..+.+ ++..+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444455544432 44455555555555555555555555555542 34444455555544 4 5555555555
Q ss_pred HHHhcCCCCCcchHHHHHHHHHh----CCCHHHHHHHHHHhcccCCC-chHHHHHHHHHHHHh----CCChHHHHHHHhc
Q 042039 216 EMQRDDVAADTSTYNTFIDGLCK----NGYIVEAVELFRTLGILKCE-LDIQAYNCLIDGLCK----SGRLEIALELFRS 286 (376)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 286 (376)
+..+.+ ++..+..+...|.. .+++++|+.+|++....+.. ..+..+..++..|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 34445555555554 56666666666666655421 124566666666666 5666666666666
Q ss_pred ccccCCCCCHHHHHHHHHHHHcc-C-----ChhHHHHHHHHHHHcC
Q 042039 287 LPRRVLVADVVTYNIMIHGLCND-G-----QMDKAHDLFLDMEENA 326 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 326 (376)
..+. +.+...+..+...|... | ++++|...|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6554 22444555566655432 2 6666666666666654
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.39 E-value=1.9e-09 Score=86.23 Aligned_cols=217 Identities=8% Similarity=0.001 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCChhhHHHHHHHH----Hcc---CcHH
Q 042039 103 DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG--KINRAEELFGSMESMGCKHDDVSYNILINGY----CKN---KEVE 173 (376)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 173 (376)
++|+.+++.++..+ +-+..+|+.-..++...+ ++++++++++.+...+ |.+..+|+.-..++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 34555555555442 223444444444444444 5555555555555543 33444444433333 333 4555
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchH--HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCC------HHHH
Q 042039 174 EALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVE--HALKLFEEMQRDDVAADTSTYNTFIDGLCKNGY------IVEA 245 (376)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 245 (376)
+++.+++++++.. +-+..+|..-...+...+.++ ++++.++++++.+ +.+..+++.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666665542 234555555555555555555 5666666666554 3445555544444444444 6777
Q ss_pred HHHHHHhcccCCCchHHHHHHHHHHHHhCCChHH-HHHHHhcccccC--CCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 042039 246 VELFRTLGILKCELDIQAYNCLIDGLCKSGRLEI-ALELFRSLPRRV--LVADVVTYNIMIHGLCNDGQMDKAHDLFLDM 322 (376)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (376)
++.++.+....+. +...|+.+...+.+.|+... +..+..++...+ .+.++..+..++.++.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 7777777666533 67777777777777776433 445666655432 2346677777778888888888888888887
Q ss_pred HH
Q 042039 323 EE 324 (376)
Q Consensus 323 ~~ 324 (376)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.39 E-value=3.4e-11 Score=84.76 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
+|..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++...+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 45555666666666666666666665543 334555555666666666666666666666554322 3445555555555
Q ss_pred hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 042039 98 KNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMES 149 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 149 (376)
..|++++|...++++.+.. +.+..++..++..+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555666655555555542 22344455555555555555555555555544
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=1.1e-10 Score=90.24 Aligned_cols=188 Identities=9% Similarity=-0.056 Sum_probs=123.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-C-ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCch--HhHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENIN-P-DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSV--VTFN 90 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 90 (376)
+...+..+...+.+.|++++|+..|+++.+.... + ...++..++.++...|++++|+..|+++++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4566777888899999999999999999876311 1 2467888999999999999999999999886443111 2455
Q ss_pred HHHHHHHh------------------CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 042039 91 VIMDELCK------------------NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGC 152 (376)
Q Consensus 91 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 152 (376)
.+..++.. .|++++|...|+++++.. +-+........... .+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 55555544 456666666666666642 11222221111000 000000
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhccchHHHHHHHHHHHhcC
Q 042039 153 KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP--TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD 221 (376)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (376)
......++..|.+.|++++|+..|+++++..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356778888899999999999888752111 12567788888889999999999888887764
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.38 E-value=4e-12 Score=91.45 Aligned_cols=146 Identities=10% Similarity=-0.107 Sum_probs=89.2
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCC
Q 042039 197 LFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGR 276 (376)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 276 (376)
|...+...|++++|+..+....... +.+...+..++..|.+.|++++|+..|+++....+. ++.++..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3444555666677776666665542 334445566677777777777777777777666532 56677777777777777
Q ss_pred hHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHH-HHHHHHcCCCCcHHHHHHHHHHHhhcCC
Q 042039 277 LEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDL-FLDMEENAVAPNVIIFVTLIHGFVRINK 346 (376)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 346 (376)
+++|+..|+++.+. .|.+...+..++.+|.+.|++++|.+. ++++.+..+. ++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL-NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 77777777776665 344566777777777777777665544 4666664322 45555555555555553
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.38 E-value=9.9e-12 Score=92.17 Aligned_cols=164 Identities=12% Similarity=0.037 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH-
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE- 95 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 95 (376)
..+..+...+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..++++....+ +...+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 345666677778888888888888777654 55677788888888888888888888877766532 33332222211
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCcHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKH-DDVSYNILINGYCKNKEVEE 174 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 174 (376)
+...+...++...+++.++.. +.+...+..++.++...|++++|...|+++......+ +...+..++.++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 112223334566666666653 2346666667777777777777777777766654211 23466666677777777777
Q ss_pred HHHHHHHHHH
Q 042039 175 ALSLYREMVS 184 (376)
Q Consensus 175 a~~~~~~~~~ 184 (376)
|...|++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666543
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.37 E-value=1.1e-10 Score=89.33 Aligned_cols=176 Identities=11% Similarity=0.016 Sum_probs=94.6
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC----ChHHHHHHH
Q 042039 34 KAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG----KMDEASRLL 109 (376)
Q Consensus 34 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 109 (376)
+|++.|++..+.| ++.++..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555566555543 55566666666666666666666666666543 44455555555555 4 566666666
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHc----cCcHHHHHHHHH
Q 042039 110 DLMVQRDVRPNAFTYSTLMDGFCL----TGKINRAEELFGSMESMGCK-HDDVSYNILINGYCK----NKEVEEALSLYR 180 (376)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 180 (376)
++..+.+ ++..+..+...|.. .+++++|..+|++..+.+.. ..+.++..|..+|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 34455555555554 55666666666666554310 014555555555555 555666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhc-c-----chHHHHHHHHHHHhcC
Q 042039 181 EMVSKGIKPTVVTYNTLFLGLFEI-H-----QVEHALKLFEEMQRDD 221 (376)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 221 (376)
+..+. +.+...+..+...|... | ++++|...++...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 65553 12333444444444332 1 4555555555554443
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=7.2e-11 Score=83.09 Aligned_cols=129 Identities=18% Similarity=0.298 Sum_probs=80.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFC 132 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (376)
++..++..+...|++++|..+++++.+.... +...+..++..+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4555666666677777777777776655322 45556666666666667777777776666553 334555666666666
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 133 LTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
..|++++|.+.++++.... +.+...+..++.++...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666666553 34455566666666666666666666666655
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.37 E-value=2e-11 Score=98.12 Aligned_cols=168 Identities=11% Similarity=0.005 Sum_probs=134.2
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhh-HHH
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFT-YST 126 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 126 (376)
+.+...+..+...+...|++++|...|++++...+. +...+..+..++...|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 556677888888999999999999999999887544 67788889999999999999999999887763 34332 333
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcc
Q 042039 127 LMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP-TVVTYNTLFLGLFEIH 205 (376)
Q Consensus 127 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 205 (376)
....+...++.+.|...+++..... |.+...+..++..+...|++++|+..|+++++..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3344667778888889999888876 6778889999999999999999999999998863221 2667888999999999
Q ss_pred chHHHHHHHHHHHh
Q 042039 206 QVEHALKLFEEMQR 219 (376)
Q Consensus 206 ~~~~a~~~~~~~~~ 219 (376)
+.+.|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888887654
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.36 E-value=5.7e-09 Score=90.08 Aligned_cols=320 Identities=9% Similarity=-0.036 Sum_probs=176.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC-hHHHHHHHHHHHhc-CCCC-chHhHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAND-WNEAKRLFFEMMDQ-GVQP-SVVTFNVIM 93 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~~-~~~~~~~l~ 93 (376)
..|...+..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+.++.. |..| +...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 456666655544 6777777777777764 4577777776666655552 34556666666553 3222 445565555
Q ss_pred HHHH----hCCChHHHHHHHHHHHhcCCCCC--hh---------------------------------------------
Q 042039 94 DELC----KNGKMDEASRLLDLMVQRDVRPN--AF--------------------------------------------- 122 (376)
Q Consensus 94 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~--~~--------------------------------------------- 122 (376)
..+. ..++.+.+..+|++.+.. ++. ..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 5432 234566677777777652 111 11
Q ss_pred ---hHHHHHHHHHhc--C--c---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHh
Q 042039 123 ---TYSTLMDGFCLT--G--K---INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVV 192 (376)
Q Consensus 123 ---~~~~l~~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (376)
.|...+..-... + + .+.+..+|+++.... +.++..|...+..+.+.|+.++|..+++++... +.+..
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 111111111110 0 0 233455666665543 455666666666677777777777777777765 22322
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcC------------CCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCch
Q 042039 193 TYNTLFLGLFEIHQVEHALKLFEEMQRDD------------VAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELD 260 (376)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 260 (376)
.+.. +....+.+.. ++.+...- ......+|...+....+.++.+.|..+|+++ ... ..+
T Consensus 248 l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~ 318 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVG 318 (493)
T ss_dssp HHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCC
T ss_pred HHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCC
Confidence 2221 1111111111 11111110 0001233455555555667788888888888 321 224
Q ss_pred HHHHHHHHHHHHhCC-ChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 042039 261 IQAYNCLIDGLCKSG-RLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIH 339 (376)
Q Consensus 261 ~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (376)
...|...+..-...+ +.+.|..+|+...+. .+.++..+...+......|+.+.|..+|+++. .....|...+.
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~ 392 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE 392 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 444543333333333 688888888887765 33345556666776777888888888888862 25667777777
Q ss_pred HHhhcCChhhHHHHHHHHHh
Q 042039 340 GFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~ 359 (376)
.-...|+.+.+.++++++.+
T Consensus 393 fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 393 YEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66777888888888887764
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.35 E-value=4.5e-10 Score=86.81 Aligned_cols=186 Identities=9% Similarity=-0.040 Sum_probs=125.3
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC--chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCh---hhH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQP--SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNA---FTY 124 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 124 (376)
+...+..++..+...|++++|+..|+++++..+.. ....+..++.++...|++++|...|+++++.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 45567778888999999999999999998864321 1357788889999999999999999999886422 22 245
Q ss_pred HHHHHHHHh------------------cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 042039 125 STLMDGFCL------------------TGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKG 186 (376)
Q Consensus 125 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 186 (376)
..++.++.. .|++++|...|+++.+.. |.+..++....... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH----
Confidence 555555554 345555555555555442 22222221111000 000000
Q ss_pred CCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHhcccC
Q 042039 187 IKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAAD---TSTYNTFIDGLCKNGYIVEAVELFRTLGILK 256 (376)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (376)
......+...+...|++++|...|+.+++.. |.+ ...+..++.++.+.|++++|.+.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356778999999999999999999874 222 2568889999999999999999999887654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.34 E-value=8.1e-11 Score=94.57 Aligned_cols=168 Identities=8% Similarity=-0.005 Sum_probs=128.1
Q ss_pred CCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHH
Q 042039 188 KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCL 267 (376)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (376)
+.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++....+. ........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 4456667777788888888888888888888775 556778888888888888999998888888766432 23333334
Q ss_pred HHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCC
Q 042039 268 IDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAP-NVIIFVTLIHGFVRINK 346 (376)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 346 (376)
...+...++.++|...++++... .|.+...+..++..+...|++++|+..|+++++..... +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 44466777788888888887776 45677888888889999999999999999888764332 25678888888888898
Q ss_pred hhhHHHHHHHHH
Q 042039 347 PSKVIELLHKMK 358 (376)
Q Consensus 347 ~~~a~~~~~~~~ 358 (376)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888887764
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.34 E-value=4.9e-11 Score=105.74 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=109.8
Q ss_pred cCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHH
Q 042039 29 EGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRL 108 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (376)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.|++..+.... +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888887765 556788888888888888888888888888876433 577788888888888888888888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc---CcHHHHHHHHHHHHHC
Q 042039 109 LDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN---KEVEEALSLYREMVSK 185 (376)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 185 (376)
+++.++.. +.+...+..++.++...|++++|.+.++++.+.. +.+...+..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88888764 3457788888888888888888888888888775 55677888888888888 8888888888888875
Q ss_pred C
Q 042039 186 G 186 (376)
Q Consensus 186 ~ 186 (376)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.34 E-value=2.3e-11 Score=90.17 Aligned_cols=162 Identities=10% Similarity=0.024 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHH-H
Q 042039 193 TYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDG-L 271 (376)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 271 (376)
.+......+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++....+ ++......... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 34455566666777777777777666553 44566677777777777777777777777665532 33333222211 1
Q ss_pred HhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCChhhH
Q 042039 272 CKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAP-NVIIFVTLIHGFVRINKPSKV 350 (376)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 350 (376)
...++..+|...++++.+. .|.+...+..++.++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222333466777776654 34457777778888888888888888888877754332 245677777778888888888
Q ss_pred HHHHHHHH
Q 042039 351 IELLHKMK 358 (376)
Q Consensus 351 ~~~~~~~~ 358 (376)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777664
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.30 E-value=8.6e-11 Score=95.50 Aligned_cols=200 Identities=8% Similarity=-0.028 Sum_probs=114.7
Q ss_pred hcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHH
Q 042039 28 KEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASR 107 (376)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 107 (376)
..|++++|.+++++..+.. +.. + +...+++++|...|+++ +..|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567888888888776542 111 0 11146677777766654 345666777777777
Q ss_pred HHHHHHhcCC---CC--ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHccCcHHHHHH
Q 042039 108 LLDLMVQRDV---RP--NAFTYSTLMDGFCLTGKINRAEELFGSMESMGC---KH--DDVSYNILINGYCKNKEVEEALS 177 (376)
Q Consensus 108 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~ 177 (376)
.+.+..+... .+ -..++..++.+|...|++++|...|++...... .+ ...++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776654311 00 134566667777777777777777776654310 11 13456667777766 77777777
Q ss_pred HHHHHHHCCCC---C--CHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC-----cchHHHHHHHHHhCCCHHHHHH
Q 042039 178 LYREMVSKGIK---P--TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAAD-----TSTYNTFIDGLCKNGYIVEAVE 247 (376)
Q Consensus 178 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~ 247 (376)
.|++.+..... + ...++..+...+...|++++|+..+++......... ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77776652100 0 134556666666666777777666666654311000 1234444555555666666666
Q ss_pred HHHHhc
Q 042039 248 LFRTLG 253 (376)
Q Consensus 248 ~~~~~~ 253 (376)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 666665
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.29 E-value=1.7e-10 Score=102.37 Aligned_cols=163 Identities=8% Similarity=-0.051 Sum_probs=123.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHH
Q 042039 64 ANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEEL 143 (376)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 143 (376)
.|++++|.+.++++.+.... +...+..+...+...|++++|...+++.++.. +.+...+..++.++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876433 67889999999999999999999999999874 44678899999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---cchHHHHHHHHHHHhc
Q 042039 144 FGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI---HQVEHALKLFEEMQRD 220 (376)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 220 (376)
+++..+.. +.+...+..++.++...|++++|.+.++++.+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998876 6678899999999999999999999999998863 34678888999999999 9999999999999887
Q ss_pred CCCCCcchHHH
Q 042039 221 DVAADTSTYNT 231 (376)
Q Consensus 221 ~~~~~~~~~~~ 231 (376)
+ +.+...+..
T Consensus 158 ~-p~~~~~~~~ 167 (568)
T 2vsy_A 158 G-VGAVEPFAF 167 (568)
T ss_dssp T-CCCSCHHHH
T ss_pred C-CcccChHHH
Confidence 5 333444433
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.25 E-value=1.1e-10 Score=94.83 Aligned_cols=226 Identities=9% Similarity=0.038 Sum_probs=158.1
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHH
Q 042039 99 NGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL-TGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALS 177 (376)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (376)
.|++++|.+++++..+.. +. .+.. .++++.|...|.++ +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777888877776542 11 0222 46777777777654 557788999999999
Q ss_pred HHHHHHHCC----CC-CCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCC---CC--CcchHHHHHHHHHhCCCHHHHHH
Q 042039 178 LYREMVSKG----IK-PTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDV---AA--DTSTYNTFIDGLCKNGYIVEAVE 247 (376)
Q Consensus 178 ~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~ 247 (376)
.|.++.... .. .-..+|..+..++...|++++|...+++.+.... .+ ...++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 999887631 11 1145788888999999999999999998765411 11 23567788888988 99999999
Q ss_pred HHHHhcccCCCc-----hHHHHHHHHHHHHhCCChHHHHHHHhcccccC----CCCC-HHHHHHHHHHHHccCChhHHHH
Q 042039 248 LFRTLGILKCEL-----DIQAYNCLIDGLCKSGRLEIALELFRSLPRRV----LVAD-VVTYNIMIHGLCNDGQMDKAHD 317 (376)
Q Consensus 248 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~ 317 (376)
.++++....... ...++..++..+...|++++|+..|+++.... ..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987542111 14678889999999999999999999987531 1111 2366677788888899999999
Q ss_pred HHHHHHHcCCCC-cHH---HHHHHHHHHhhcCChhhHHHH
Q 042039 318 LFLDMEENAVAP-NVI---IFVTLIHGFVRINKPSKVIEL 353 (376)
Q Consensus 318 ~~~~~~~~~~~~-~~~---~~~~l~~~~~~~g~~~~a~~~ 353 (376)
.|++.. ..... +.. ....++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999998 53221 221 244455555 56777666663
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.23 E-value=1.6e-08 Score=81.81 Aligned_cols=183 Identities=13% Similarity=0.018 Sum_probs=135.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAN-DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
++.+-....+.+..++|+++++.++..+ |.+..+|+.-..++...| .+++++++++.++...++ +..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3333334445556678999999999887 667888888888888888 599999999999988655 7778887777776
Q ss_pred hC-C-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHH--------HHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042039 98 KN-G-KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKIN--------RAEELFGSMESMGCKHDDVSYNILINGYC 167 (376)
Q Consensus 98 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (376)
.. + ++++++.+++++++.+ +.|..+|.....++.+.|.++ ++.+.++++.+.. +.+..+|+....++.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 66 6 8899999999999875 446777777666666666665 8888888888876 667788888888777
Q ss_pred ccCc-------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccc
Q 042039 168 KNKE-------VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ 206 (376)
Q Consensus 168 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (376)
+.+. ++++++.+++++... +-|...|..+-..+.+.|.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7765 677888888877752 3356666655555554443
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.21 E-value=7.1e-08 Score=78.07 Aligned_cols=218 Identities=10% Similarity=0.053 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-C-cHHHHHHHH
Q 042039 103 DEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG-KINRAEELFGSMESMGCKHDDVSYNILINGYCKN-K-EVEEALSLY 179 (376)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 179 (376)
++|+.+++.++..+ +-+..+|+.-..++...| .+++++++++.+.... |.+..+|+.-..++... + +++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444432 112333444334443444 2444444444444443 33444444433333333 3 444444444
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhccchH--------HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCC-------HHH
Q 042039 180 REMVSKGIKPTVVTYNTLFLGLFEIHQVE--------HALKLFEEMQRDDVAADTSTYNTFIDGLCKNGY-------IVE 244 (376)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 244 (376)
+++++.. +-+..+|..-...+.+.+.++ ++++.++++++.+ +.+..+++.....+.+.+. +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 4444432 223344433333333333333 4555555555543 3344445544444444443 455
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHHHhCCCh--------------------HHHHHHHhcccccC-----CCCCHHHH
Q 042039 245 AVELFRTLGILKCELDIQAYNCLIDGLCKSGRL--------------------EIALELFRSLPRRV-----LVADVVTY 299 (376)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~ 299 (376)
+++.++++....+. |...|+.+-..+.+.|+. .....+...+.... ..+++..+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 66666665555422 555555555555544432 23333333443321 13566777
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHc
Q 042039 300 NIMIHGLCNDGQMDKAHDLFLDMEEN 325 (376)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (376)
..++..|...|+.++|.++++.+.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 77888888888888888888887643
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.20 E-value=4.1e-10 Score=78.07 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
.+......+.+.|++++|++.|++.++.+ |.+..+|..++.++...|++++|++.|++.++.+.. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34444444555555555555555444443 334444444455555555555555555544443222 3444444444444
Q ss_pred hCCChHHHHHHHHHHHhc
Q 042039 98 KNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~ 115 (376)
..|++++|...|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 444444444444444443
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.19 E-value=6.2e-10 Score=77.15 Aligned_cols=109 Identities=10% Similarity=0.063 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+...+..+.+.|++++|++.|++.++..+. +...|..+..++...|++++|+..+++.++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 344555566666666666666666666554322 45555555666666666666666666665543 2245555555666
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVSYNIL 162 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (376)
+...|++++|.+.|+++.+.. |.+..++..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 666666666666666655553 3344444433
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=3.6e-09 Score=80.95 Aligned_cols=129 Identities=14% Similarity=0.024 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
..+..+...+...|++++|+..|++.. +|+..++..++.++...|++++|++.|++.++.... +...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 446667778888999999999998774 457788889999999999999999999998887433 677888888899
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRPNA----------------FTYSTLMDGFCLTGKINRAEELFGSMESMG 151 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 151 (376)
...|++++|...+++..+.. +.+. ..+..++.++...|++++|...|+++....
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999888753 2222 567778888888888888888888887764
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=4.4e-09 Score=80.44 Aligned_cols=128 Identities=16% Similarity=0.041 Sum_probs=107.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
..+..++..+...|++++|+..|+++. .|+...+..+..++...|++++|...+++.++.. +.+...+..++.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667888889999999999998774 5578889999999999999999999999998874 44678888999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 132 CLTGKINRAEELFGSMESMGCKHDD----------------VSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
...|++++|...|+++.... +.+. .++..++.++...|++++|...++++.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999998764 3333 67888899999999999999999998885
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.16 E-value=3.6e-09 Score=85.36 Aligned_cols=202 Identities=9% Similarity=0.046 Sum_probs=135.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCch----H
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV-QPSV----V 87 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~ 87 (376)
.|+..+...+...+.-.- ..++..-... .......+...+..+...|++++|...+++..+... .|+. .
T Consensus 43 ~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~-~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI-----IHFYEVLIYS-DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT-----HHHHHTTTSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH-----HHHhCCCCCC-cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 577777777777654321 1122211111 012245666667788888999999999988877532 2221 1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCcHHHHHHHHHHHHh----c--CCCCCh
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQRDVR-PN----AFTYSTLMDGFCLTGKINRAEELFGSMES----M--GCKHDD 156 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~--~~~~~~ 156 (376)
.+..+...+...+++++|...++++++.... ++ ..++..++.+|...|++++|...|+++.+ . ..+...
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 2334666777778889999999888874322 22 23678888889999999999998888863 1 111223
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhccc-hHHHHHHHHHHHhc
Q 042039 157 VSYNILINGYCKNKEVEEALSLYREMVSK----GIKP-TVVTYNTLFLGLFEIHQ-VEHALKLFEEMQRD 220 (376)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~ 220 (376)
.++..++.+|.+.|++++|+..+++.++. +..+ -..++..+..++...|+ +++|...+++....
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 47788889999999999999988887753 1122 26678888888888884 58888888877653
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.15 E-value=4.3e-10 Score=90.02 Aligned_cols=194 Identities=12% Similarity=-0.023 Sum_probs=113.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..++.++...|++++|+..++++++.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45667777788888888888888888887764 557777888888888888888888888888776433 5667777788
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE 174 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (376)
++...|++++|...+++..+.+.. +...+...+....+ ...+... ........+.+......+.... .|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 888888888888888877764211 11111111111111 1111111 1122222344444444443322 567777
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc-cchHHHHHHHHHHHh
Q 042039 175 ALSLYREMVSKGIKPT-VVTYNTLFLGLFEI-HQVEHALKLFEEMQR 219 (376)
Q Consensus 175 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 219 (376)
|++.++...+. .|+ ......+...+.+. +.++++.++|..+.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777766653 333 22223333333333 456666777766544
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.15 E-value=3.9e-09 Score=82.50 Aligned_cols=199 Identities=10% Similarity=0.024 Sum_probs=134.7
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCHhHHHHH-------HHHHHhccchHHHHHHHHHHHhcC---C--CCC----------
Q 042039 168 KNKEVEEALSLYREMVSKGIKPTVVTYNTL-------FLGLFEIHQVEHALKLFEEMQRDD---V--AAD---------- 225 (376)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~---~--~~~---------- 225 (376)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+....... . ..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777652 2245556555 445555555555555554444310 0 000
Q ss_pred -----cchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCC--HHH
Q 042039 226 -----TSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVAD--VVT 298 (376)
Q Consensus 226 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 298 (376)
......++..+...|++++|.++|..+...+ |+......++..+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1234456677888999999999999887754 333367777778899999999999998766542 121 346
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHH
Q 042039 299 YNIMIHGLCNDGQMDKAHDLFLDMEENAVAP--NVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMV 372 (376)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 372 (376)
+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++.... |+......|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 7888999999999999999999988543224 34466677788899999999999999998764 444444333
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.14 E-value=2.5e-09 Score=74.89 Aligned_cols=122 Identities=8% Similarity=-0.035 Sum_probs=88.3
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHH
Q 042039 11 VCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFN 90 (376)
Q Consensus 11 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (376)
..+.+...|..+...+...|++++|+..|++..+.. +.+..++..++.++...|++++|.+.++++.+.... +...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHH
Confidence 344556778888888888888888888888887764 556778888888888888888888888888776433 566777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 91 VIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
.+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77778888888888888888777653 223455555555555443
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.14 E-value=7.1e-10 Score=88.72 Aligned_cols=97 Identities=10% Similarity=-0.081 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+..++..+...|++++|+..|+++++.... +...+..+..++...|++++|...+++.++.. +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344444555555555555555555555544221 34444445555555555555555555554432 2234444444444
Q ss_pred HHhcCcHHHHHHHHHHHHh
Q 042039 131 FCLTGKINRAEELFGSMES 149 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~ 149 (376)
+...|++++|...|+++..
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4455555555554444433
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.14 E-value=9.7e-10 Score=78.50 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=58.4
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILING 165 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (376)
...+..+...+...|++++|...|++++..+ +.+...|..++.++...|++++|...|+++.... |.++..+..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3445555556666666666666666666553 3345556666666666666666666666666554 4455566666666
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 042039 166 YCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~ 185 (376)
|...|++++|...|+++++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666653
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.14 E-value=3.4e-09 Score=77.43 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
..|..+...+...|++++|...|++..+.. +.+..++..++.++...|++++|...+++.++.... +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344455555555555555555555555443 334555555555555555555555555555544221 344455555555
Q ss_pred HhCCChHHHHHHHHHHHhc
Q 042039 97 CKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~ 115 (376)
...|++++|...++++.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.13 E-value=1.7e-10 Score=94.78 Aligned_cols=143 Identities=10% Similarity=-0.040 Sum_probs=77.5
Q ss_pred CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc--------------hHhHHHHHHH
Q 042039 30 GFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS--------------VVTFNVIMDE 95 (376)
Q Consensus 30 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 95 (376)
+++++|++.|+...... +.+...+..+...+...|++++|+..|++.+....... ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443321 22455666677777777777777777777766533211 2455555555
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
+.+.|++++|+..++++++.. +.+...+..++.++...|++++|...|+++.+.. |.+..++..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555543 2244555555555555555555555555555543 33444555555555555555554
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.12 E-value=5.2e-09 Score=76.41 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=70.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
..+..++..+...|++++|...|++.++.... +...+..+..++...|++++|...+++.++.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34555566666666666666666666654322 45555566666666666666666666666543 23455555566666
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCChhhHHH--HHHHHHccCcHHHHHHHHHHH
Q 042039 132 CLTGKINRAEELFGSMESMGCKHDDVSYNI--LINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 182 (376)
...|++++|...++++.... +.+...+.. .+..+...|++++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666655543 233333322 222244555555555555544
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=1.8e-07 Score=80.76 Aligned_cols=296 Identities=11% Similarity=-0.003 Sum_probs=187.4
Q ss_pred ccCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhhhC-CC-CCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcCCC
Q 042039 11 VCKPNTVTYNTIIDGLCKEGF-VDKAKALFLQMKGE-NI-NPDVVTYNSLIHGLCH----ANDWNEAKRLFFEMMDQGVQ 83 (376)
Q Consensus 11 ~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 83 (376)
...|++..|...+....+.+. .+....+|+..... |. +.+...|...+..+.. .++.+.+.++|++++.....
T Consensus 42 ~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~ 121 (493)
T 2uy1_A 42 KKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG 121 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT
T ss_pred ccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh
Confidence 345788888888887777663 45567777776653 31 3466777777766542 35677788888888764211
Q ss_pred CchH------------------------------------------------hHHHHHHHHHhC--CC-----hHHHHHH
Q 042039 84 PSVV------------------------------------------------TFNVIMDELCKN--GK-----MDEASRL 108 (376)
Q Consensus 84 ~~~~------------------------------------------------~~~~l~~~~~~~--~~-----~~~a~~~ 108 (376)
.-.. .|...+..-... +- .+.+..+
T Consensus 122 ~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 122 SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 1111 111111111111 00 2345667
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCC--
Q 042039 109 LDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKG-- 186 (376)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 186 (376)
|++++... +.++..|...+..+...|+.+.|..++++.... |.+...+...+.. ...+ +. ++.+.+.-
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~---~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEE---AV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCT---HH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchh---HH---HHHHHHHHHh
Confidence 88877753 445778888888899999999999999999987 4554444332222 1111 11 22222210
Q ss_pred -------C---CCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCC-CHHHHHHHHHHhccc
Q 042039 187 -------I---KPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNG-YIVEAVELFRTLGIL 255 (376)
Q Consensus 187 -------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 255 (376)
. ......|...+....+.++.+.|..+|+++ +.. ..+...|...+..-...+ +.+.|..+|+.+...
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 112345667777777788999999999999 322 233344443333333333 699999999998775
Q ss_pred CCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 256 KCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
. +.++..+...+......|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 22455666778878889999999999999842 567788888777788999999999988874
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=6.6e-08 Score=77.91 Aligned_cols=161 Identities=13% Similarity=0.055 Sum_probs=82.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCC-CCCh----hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-C----hhhHHH
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQRDV-RPNA----FTYSTLMDGFCLTGKINRAEELFGSMESMGCKH-D----DVSYNI 161 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 161 (376)
.+..+...|++++|..++++..+... .|+. ..+..++..+...+++++|...++++....... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35556667777777777777665321 1111 122234555555566777777776666532111 1 124666
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHC-----CCCC-CHhHHHHHHHHHHhccchHHHHHHHHHHHhcC----C-CCCcchHH
Q 042039 162 LINGYCKNKEVEEALSLYREMVSK-----GIKP-TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD----V-AADTSTYN 230 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~ 230 (376)
++.+|...|++++|+..++++++. +..+ ...++..++..|...|++++|...+++.++.. . ..-..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666667777777666666531 1111 12345555555666666666666555544321 0 01123444
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHh
Q 042039 231 TFIDGLCKNGY-IVEAVELFRTL 252 (376)
Q Consensus 231 ~l~~~~~~~~~-~~~a~~~~~~~ 252 (376)
.++.++.+.|+ +++|...++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 55555555552 35555554443
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.11 E-value=1.8e-08 Score=81.20 Aligned_cols=162 Identities=9% Similarity=0.012 Sum_probs=86.6
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCC-----cchHHHHHHHHHhCCCHHHHHHHHHHhcccCC---Cc--hHHHHHH
Q 042039 197 LFLGLFEIHQVEHALKLFEEMQRDDVAAD-----TSTYNTFIDGLCKNGYIVEAVELFRTLGILKC---EL--DIQAYNC 266 (376)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ 266 (376)
.+..+...|++++|.+.+....+...... ...+..++..+...|++++|+..++++..... .+ ...+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34444445555555555544444321100 01122344445556666666666666543211 11 1346666
Q ss_pred HHHHHHhCCChHHHHHHHhccccc--CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcC----CCC-cHHHHH
Q 042039 267 LIDGLCKSGRLEIALELFRSLPRR--VLVAD----VVTYNIMIHGLCNDGQMDKAHDLFLDMEENA----VAP-NVIIFV 335 (376)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~ 335 (376)
++..|...|++++|...++++.+. ..+.+ ..++..++.+|...|++++|+..+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 677777777777777777665521 01111 1466667777777777777777777665431 000 145666
Q ss_pred HHHHHHhhcCChhhH-HHHHHHHH
Q 042039 336 TLIHGFVRINKPSKV-IELLHKMK 358 (376)
Q Consensus 336 ~l~~~~~~~g~~~~a-~~~~~~~~ 358 (376)
.+..+|.+.|++++| ...+++..
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 677777777777777 56566554
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.10 E-value=5.2e-09 Score=84.40 Aligned_cols=171 Identities=8% Similarity=0.050 Sum_probs=126.2
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc-----hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC---CC-
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS-----VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVR---PN- 120 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~- 120 (376)
....+...+..+...|++++|.+.+++.++...... ...+..+...+...|++++|...+++.++.... +.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 445666778888899999999999988887533211 123445667778888999999999998764211 11
Q ss_pred -hhhHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHccCcHHHHHHHHHHHHHCC----CCC
Q 042039 121 -AFTYSTLMDGFCLTGKINRAEELFGSMESM--GCKHD----DVSYNILINGYCKNKEVEEALSLYREMVSKG----IKP 189 (376)
Q Consensus 121 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 189 (376)
..++..++..|...|++++|...++++... ..+.+ ..++..++.+|...|++++|+..+++.++.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 447888999999999999999999988632 01111 2578889999999999999999999887531 111
Q ss_pred -CHhHHHHHHHHHHhccchHHH-HHHHHHHHhc
Q 042039 190 -TVVTYNTLFLGLFEIHQVEHA-LKLFEEMQRD 220 (376)
Q Consensus 190 -~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 220 (376)
-..++..+..++...|++++| ...+++....
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 166788899999999999999 7777776543
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.10 E-value=5.1e-09 Score=81.87 Aligned_cols=197 Identities=8% Similarity=-0.070 Sum_probs=135.6
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCChhhHHHH-------HHHHHccCcHHHHHHHHHHHHHCCCCCC---------------
Q 042039 133 LTGKINRAEELFGSMESMGCKHDDVSYNIL-------INGYCKNKEVEEALSLYREMVSKGIKPT--------------- 190 (376)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 190 (376)
..++...|.+.|.++.... |.....|..+ ...+.+.++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677888888888887775 5566677766 4555555555555555555443 1221
Q ss_pred -------HhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCch--H
Q 042039 191 -------VVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELD--I 261 (376)
Q Consensus 191 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 261 (376)
......+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 2334456677788889999998888877654 322266667778889999999999998665432 221 3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhcccccCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 042039 262 QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVA--DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTL 337 (376)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (376)
..+..++.++...|++++|+..|++.......| ........+.++.+.|+.++|...|+++.... |+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 467888889999999999999999887543313 34567778888999999999999999998864 444444433
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.10 E-value=4.7e-07 Score=72.93 Aligned_cols=199 Identities=12% Similarity=-0.009 Sum_probs=129.5
Q ss_pred hhHHHHHHHH---HhcCChh-HHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC----------hHHHHHHHHHHHhcCC
Q 042039 17 VTYNTIIDGL---CKEGFVD-KAKALFLQMKGENINPDVVTYNSLIHGLCHAND----------WNEAKRLFFEMMDQGV 82 (376)
Q Consensus 17 ~~~~~l~~~~---~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~ 82 (376)
..|..+.+.+ .+.|.+. +|+++++.++..+ |.+..+|+.-..++...++ +++++.+++.++...+
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P 105 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 105 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC
Confidence 4455554433 3556655 7888888888776 5566777766555554443 5778888888887655
Q ss_pred CCchHhHHHHHHHHHhCC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc-HHHHHHHHHHHHhcCCCCChhhH
Q 042039 83 QPSVVTFNVIMDELCKNG--KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK-INRAEELFGSMESMGCKHDDVSY 159 (376)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 159 (376)
+ +..+|+.-..++...+ .+++++.+++.+++.+ +-|..+|+.-..++...|. ++++.+.++++.... +.+..+|
T Consensus 106 K-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW 182 (331)
T 3dss_A 106 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 182 (331)
T ss_dssp T-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred C-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 4 6777777777777777 3788888888888875 4467777777777777777 578888888888776 5677777
Q ss_pred HHHHHHHHcc--------------CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-----------cchHHHHHHH
Q 042039 160 NILINGYCKN--------------KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI-----------HQVEHALKLF 214 (376)
Q Consensus 160 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~ 214 (376)
+....++... +.++++++.+...+... +-|...|.-+-..+... +.++++++.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 7666665544 44677777777777652 33555554333333332 2344555555
Q ss_pred HHHHhc
Q 042039 215 EEMQRD 220 (376)
Q Consensus 215 ~~~~~~ 220 (376)
.++.+.
T Consensus 262 ~elle~ 267 (331)
T 3dss_A 262 KELQEL 267 (331)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555544
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.10 E-value=1.5e-09 Score=77.57 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=50.4
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (376)
+...+..+...+...|++++|+..|++++...+. +...|..+..++...|++++|...|++++..+ +.+...+..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3444555555555555555555555555544222 44445555555555555555555555555442 223444555555
Q ss_pred HHHhcCcHHHHHHHHHHHHhc
Q 042039 130 GFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~ 150 (376)
++...|++++|...|+++...
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=8.7e-10 Score=78.74 Aligned_cols=126 Identities=10% Similarity=-0.017 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
......+.+.+...+-+++++ +.. |.+...+..+...+.+.|++++|+..|++++...+. +...|..+..+
T Consensus 9 ~~~~~~l~~~~~~~~~l~~al-------~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~ 79 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDIN-------AIP-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAI 79 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGGC-------CSC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHh-------CCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 445566666666665555443 332 446778888889999999999999999999887544 67888889999
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMG 151 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 151 (376)
+...|++++|...|++.++.. +.++..+..++.++...|++++|...|+++....
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998875 3467888889999999999999999999998874
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.09 E-value=1.8e-09 Score=80.01 Aligned_cols=122 Identities=8% Similarity=0.089 Sum_probs=82.5
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH-HHhCCCh--H
Q 042039 27 CKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE-LCKNGKM--D 103 (376)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 103 (376)
...|++++|+..+++..+.. +.+...+..++.++...|++++|...|+++.+.... +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45677777777777776654 556677777777777788888888888777765332 55666666666 6677776 7
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 042039 104 EASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMG 151 (376)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 151 (376)
+|...++++++.. +.+...+..++.++...|++++|...|+++....
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777653 3345666777777777777777777777777654
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=2e-09 Score=81.60 Aligned_cols=157 Identities=12% Similarity=-0.004 Sum_probs=99.8
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc----CCC-CchHhHHHHHHHHHhCCC
Q 042039 27 CKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ----GVQ-PSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 101 (376)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.+.. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678888888855555432 1345677888888888888888888888887662 111 124466777778888888
Q ss_pred hHHHHHHHHHHHhc----CCCC--ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHccC
Q 042039 102 MDEASRLLDLMVQR----DVRP--NAFTYSTLMDGFCLTGKINRAEELFGSMESMGC-KHD----DVSYNILINGYCKNK 170 (376)
Q Consensus 102 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~ 170 (376)
+++|...+++.++. +..+ ....+..+...+...|++++|...+++...... ..+ ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888777653 1011 134566677777777888888777777653210 011 223466677777777
Q ss_pred cHHHHHHHHHHHHH
Q 042039 171 EVEEALSLYREMVS 184 (376)
Q Consensus 171 ~~~~a~~~~~~~~~ 184 (376)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776654
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.08 E-value=7.5e-09 Score=71.41 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
...|..+...+...|++++|++.++++.+.. +.+..++..++.++...|++++|...++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 3455556666666666666666666665543 34455555666666666666666666666655422 244455555555
Q ss_pred HHhCCChHHHHHHHHHHHhc
Q 042039 96 LCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~ 115 (376)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55666666666666555554
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.07 E-value=3e-09 Score=74.14 Aligned_cols=117 Identities=12% Similarity=-0.043 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
...|..+...+...|++++|+..+++..... +.+...+..++.++...|++++|.+.+++....... +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4445555555555555555555555555443 334455555555555555555555555555544221 34444555555
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555555555442 223344444444444433
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.07 E-value=2.3e-09 Score=79.35 Aligned_cols=121 Identities=7% Similarity=0.103 Sum_probs=97.5
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCcH--H
Q 042039 62 CHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG-FCLTGKI--N 138 (376)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 138 (376)
...|++++|...+++.++.... +...+..+..++...|++++|...++++++.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4568889999999998876433 67888889999999999999999999998864 3467778888888 7788988 9
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 139 RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
+|...++++.... |.+...+..++.++...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999988875 566788888999999999999999999998885
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.06 E-value=6.4e-09 Score=72.76 Aligned_cols=118 Identities=7% Similarity=-0.001 Sum_probs=69.3
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 042039 49 PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLM 128 (376)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 128 (376)
.+...+..++..+...|++++|...|+++.+.... +...+..+..++...|++++|...++++.+.. +.+...+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34556666666666666777777766666654322 45556666666666666666666666666543 23455566666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 129 DGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
.++...|++++|.+.|++..... +.+...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 66666666666666666665543 33344455555444433
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.05 E-value=1.7e-09 Score=77.32 Aligned_cols=110 Identities=10% Similarity=-0.023 Sum_probs=85.2
Q ss_pred HHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 042039 73 LFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGC 152 (376)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 152 (376)
.|++++... +.+...+..+...+...|++++|...|++++..+ +.+...+..++.++...|++++|...|+++....
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 445555432 1245567777888888888888888888888764 4467788888888888888888888888888775
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 153 KHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
|.++..+..++.++...|++++|...|++.++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567778888888888888888888888888774
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.04 E-value=3.1e-09 Score=75.48 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+..+...+...|++++|...|++++...+. +...|..+..++...|++++|...|++.+..+ +.+...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 334444444555555555555555555444222 34444444555555555555555555554442 2234444445555
Q ss_pred HHhcCcHHHHHHHHHHHHhc
Q 042039 131 FCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~ 150 (376)
+...|++++|...|+++...
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555544443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.04 E-value=5.6e-09 Score=72.76 Aligned_cols=119 Identities=11% Similarity=0.058 Sum_probs=65.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (376)
+...+..++..+...|++++|...++++...... +...+..+..++...|++++|...+++..+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3445555566666666666666666666554222 44555555556666666666666666655542 223445555555
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc
Q 042039 130 GFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE 171 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (376)
++...|++++|...+++..... +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5556666666666665555543 3344445555555544443
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.04 E-value=1.7e-08 Score=69.51 Aligned_cols=113 Identities=16% Similarity=0.218 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+..++..+...|++++|.+.++++.+... .+...+..+...+...|++++|..+++++.+.. +.+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 44555566666666666666666666655432 244555555666666666666666666665542 2344555555555
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVSYNILINGY 166 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (376)
+...|++++|...++++.... +.+...+..+..++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 666666666666666555543 33344444444433
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=1e-08 Score=84.28 Aligned_cols=131 Identities=9% Similarity=-0.035 Sum_probs=113.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---------------hhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPD---------------VVTYNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
+...|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..++...|++++|+..|+++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678889999999999999999999998875 333 58999999999999999999999999999
Q ss_pred cCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHH-HHHHHHHH
Q 042039 80 QGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRA-EELFGSME 148 (376)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 148 (376)
.... +...+..+..++...|++++|...|+++++.. +.+..++..+..++...|+.++| ...++.+.
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7543 78899999999999999999999999999874 44678888999999999999988 44666554
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.01 E-value=4.4e-09 Score=79.70 Aligned_cols=156 Identities=11% Similarity=-0.014 Sum_probs=74.0
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHhCCCH
Q 042039 168 KNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD-----DVAADTSTYNTFIDGLCKNGYI 242 (376)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~ 242 (376)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... ..+....++..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 2223455566666666666666666666665542 0111233455555555556666
Q ss_pred HHHHHHHHHhccc----CCC--chHHHHHHHHHHHHhCCChHHHHHHHhcccccCC-CCC----HHHHHHHHHHHHccCC
Q 042039 243 VEAVELFRTLGIL----KCE--LDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVL-VAD----VVTYNIMIHGLCNDGQ 311 (376)
Q Consensus 243 ~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~ 311 (376)
++|...+++.... +.. .....+..++..+...|++++|...+++...... ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666555554332 101 1123445555555555555555555555432100 001 1223444555555555
Q ss_pred hhHHHHHHHHHHH
Q 042039 312 MDKAHDLFLDMEE 324 (376)
Q Consensus 312 ~~~a~~~~~~~~~ 324 (376)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.00 E-value=9.5e-10 Score=83.14 Aligned_cols=146 Identities=16% Similarity=0.034 Sum_probs=66.8
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc---------------hHhHH
Q 042039 26 LCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS---------------VVTFN 90 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~ 90 (376)
....|+++++.+.|+.-.... ......+..++..+...|++++|+..|++.+....... ...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 334455555555554322211 22344566666677777777777777777766422110 13444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 042039 91 VIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK 170 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (376)
.+..++...|++++|...+++.++.. +.+...+..++.++...|++++|...|+++.... |.+..++..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 44445555555555555555554432 2234444444555555555555555555544443 233344444444444444
Q ss_pred cHHH
Q 042039 171 EVEE 174 (376)
Q Consensus 171 ~~~~ 174 (376)
+.++
T Consensus 171 ~~~~ 174 (198)
T 2fbn_A 171 EARK 174 (198)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 3333
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.98 E-value=7.1e-09 Score=73.59 Aligned_cols=100 Identities=10% Similarity=-0.081 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++++...+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 44567778889999999999999999998876 678899999999999999999999999999997544 6778889999
Q ss_pred HHHhCCChHHHHHHHHHHHhcC
Q 042039 95 ELCKNGKMDEASRLLDLMVQRD 116 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~ 116 (376)
++...|++++|...|+..++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.6e-08 Score=70.11 Aligned_cols=98 Identities=11% Similarity=-0.002 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
...|..+...+.+.|++++|+..|++..+.. +.+...|..++.++...|++++|+..+++.++..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3456666667777777777777777776654 556667777777777777777777777777665433 45666666777
Q ss_pred HHhCCChHHHHHHHHHHHhc
Q 042039 96 LCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~ 115 (376)
+...|++++|...+++.++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766654
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.97 E-value=3.2e-08 Score=67.40 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
+..+..+...+...|++++|...|++..... +.+...+..++.++...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4455666666666666666666666665543 445556666666666666666666666666654322 45555556666
Q ss_pred HHhCCChHHHHHHHHHHHhc
Q 042039 96 LCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~ 115 (376)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.96 E-value=1.2e-08 Score=70.68 Aligned_cols=98 Identities=9% Similarity=0.123 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--Cc----hHhHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PS----VVTFN 90 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 90 (376)
.++..+...+.+.|++++|++.|++.++.. |.+..+|..++.+|...|++++|++.+++.++.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456666777777777777777777776654 556667777777777777777777777776654211 01 12455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 91 VIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
.+..++...|++++|+..|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555666666666666666666553
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.95 E-value=2.5e-09 Score=80.82 Aligned_cols=151 Identities=11% Similarity=-0.022 Sum_probs=90.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCh---------------
Q 042039 57 LIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNA--------------- 121 (376)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 121 (376)
.+......|+++++.+.|+...... ......+..+...+...|++++|...|++.++.... +.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHH
Confidence 3444455566666666665332221 113456777788888999999999999998875321 22
Q ss_pred -hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042039 122 -FTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLG 200 (376)
Q Consensus 122 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (376)
.++..++.++...|++++|...++++.... +.+..++..++.++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 566677777777777777777777777664 4566677777777777777777777777777642 2345556666666
Q ss_pred HHhccchHHHH
Q 042039 201 LFEIHQVEHAL 211 (376)
Q Consensus 201 ~~~~~~~~~a~ 211 (376)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=8.4e-08 Score=65.25 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=50.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
..+..++..+...|++++|...|++....... +...+..+..++...|++++|...+++..+.. +.+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34455555555555555555555555554222 44445555555555555555555555555442 22344455555555
Q ss_pred HhcCcHHHHHHHHHHHHhc
Q 042039 132 CLTGKINRAEELFGSMESM 150 (376)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~ 150 (376)
...|++++|...+++....
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555544
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.91 E-value=6e-08 Score=67.13 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYC 167 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (376)
.+..+...+...|++++|...|++.++.. +.+...+..++.++...|++++|...++++.... |.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444445555555555555544432 2234444455555555555555555555554443 334444555555555
Q ss_pred ccCcHHHHHHHHHHHHH
Q 042039 168 KNKEVEEALSLYREMVS 184 (376)
Q Consensus 168 ~~~~~~~a~~~~~~~~~ 184 (376)
..|++++|...|+++.+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555444
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.91 E-value=2.8e-08 Score=72.42 Aligned_cols=100 Identities=7% Similarity=-0.050 Sum_probs=70.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 345567777777777777777777777777664 456677777777777777777777777777766433 566677777
Q ss_pred HHHHhCCChHHHHHHHHHHHhc
Q 042039 94 DELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
.++...|++++|...|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777777777777664
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.89 E-value=6.2e-06 Score=66.49 Aligned_cols=138 Identities=9% Similarity=0.023 Sum_probs=82.8
Q ss_pred cCCChH-HHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC----------hHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042039 63 HANDWN-EAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK----------MDEASRLLDLMVQRDVRPNAFTYSTLMDGF 131 (376)
Q Consensus 63 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (376)
+.|.+. +|+++++.++..++. +..+|+.--.++...+. +++++.+++.++... +-+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444444 678888888776443 44555544433333322 466677777776654 33566666666666
Q ss_pred HhcC--cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 042039 132 CLTG--KINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE-VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI 204 (376)
Q Consensus 132 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (376)
...+ .++++..+++++.+.. +.+..+|+.-..+....|. ++++++.++++++.. +.+..+|......+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 6666 3677777777777665 5566666666666666666 467777777777653 33555565555544443
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.88 E-value=5.6e-08 Score=67.31 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=33.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQ 114 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (376)
++..++..+.+.|++++|++.|++.++..+. +...|..+..++...|++++|+..+++.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555555555555555554322 444555555555555555555555555544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.87 E-value=5.9e-08 Score=68.25 Aligned_cols=98 Identities=14% Similarity=-0.042 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD 94 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (376)
++..|..+...+...|++++|+..|++..... +.+...+..++.++...|++++|...+++.++.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44555666666666666666666666655543 444555666666666666666666666666554322 4455555555
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 042039 95 ELCKNGKMDEASRLLDLMVQ 114 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~ 114 (376)
++...|++++|...++++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666655554
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.87 E-value=6.3e-08 Score=70.53 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 129 (376)
+...+..+...+...|++++|++.|++.++.... +...|..+..++...|++++|+..+++.++.. +.+...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556666666777777777777777777665332 55666666666677777777777777666653 334566666666
Q ss_pred HHHhcCcHHHHHHHHHHHHhcC
Q 042039 130 GFCLTGKINRAEELFGSMESMG 151 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~ 151 (376)
++...|++++|...|+++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 6666667777766666666553
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.87 E-value=4.1e-08 Score=66.14 Aligned_cols=98 Identities=13% Similarity=-0.015 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC--chHhHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQP--SVVTFNVIM 93 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 93 (376)
...|..+...+...|++++|+..|++..+.. +.+..++..++.++...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3444555555555555555555555554443 3344455555555555555555555555555432 11 234444455
Q ss_pred HHHHhC-CChHHHHHHHHHHHhc
Q 042039 94 DELCKN-GKMDEASRLLDLMVQR 115 (376)
Q Consensus 94 ~~~~~~-~~~~~a~~~~~~~~~~ 115 (376)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.86 E-value=7.8e-08 Score=67.59 Aligned_cols=100 Identities=11% Similarity=-0.042 Sum_probs=60.3
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 042039 49 PDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLM 128 (376)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 128 (376)
.+...+..++..+...|++++|...|++.+..... +...+..+..++...|++++|...+++.++.+ +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 34556666666666666666666666666665322 45556666666666666666666666666543 22455566666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhc
Q 042039 129 DGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
.++...|++++|...|+++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666665543
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.3e-07 Score=67.35 Aligned_cols=99 Identities=18% Similarity=0.093 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPD---VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNV 91 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (376)
+...+..+...+...|++++|+..|++..+.. +.+ ...+..+..++...|++++|+..+++..+.... +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 34555666666666666666666666666543 212 455555566666666666666666665554222 3445555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhc
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
+..++...|++++|...+++.++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555666666666666655554
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.85 E-value=7.8e-08 Score=64.74 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=58.4
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC--ChhhHHHH
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRP--NAFTYSTL 127 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 127 (376)
+...+..++..+...|++++|...++++.+.... +...+..+..++...|++++|...+++.++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 4455566666666666666666666666655322 44555556666666666666666666666542 22 34555556
Q ss_pred HHHHHhc-CcHHHHHHHHHHHHhc
Q 042039 128 MDGFCLT-GKINRAEELFGSMESM 150 (376)
Q Consensus 128 ~~~~~~~-~~~~~a~~~~~~~~~~ 150 (376)
+.++... |++++|.+.++++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666666554
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.84 E-value=6.2e-09 Score=89.32 Aligned_cols=157 Identities=8% Similarity=-0.061 Sum_probs=69.8
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHH
Q 042039 31 FVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLD 110 (376)
Q Consensus 31 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 110 (376)
++++|++.|+...... +.....+..+...+.+.|++++|+..|+++++....... + ..+...
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~---- 310 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK---- 310 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----
Confidence 3444444443333221 223445666666666667777777777666654222110 0 000000
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 042039 111 LMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT 190 (376)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 190 (376)
+.. .....+|..+..++.+.|++++|...++++.... +.+..++..++.+|...|++++|+..|+++++.. +.+
T Consensus 311 ~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~ 384 (457)
T 1kt0_A 311 ASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQN 384 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 000 0002344445555555555555555555555443 3344455555555555555555555555555431 123
Q ss_pred HhHHHHHHHHHHhccchHHHH
Q 042039 191 VVTYNTLFLGLFEIHQVEHAL 211 (376)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~a~ 211 (376)
...+..+..++...++.+++.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555444443
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.8e-07 Score=65.57 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=80.9
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc----hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhh
Q 042039 48 NPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS----VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFT 123 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (376)
+.+...+..++..+...|++++|.+.|++.++.. |+ ...+..+..++...|++++|...+++.++.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3456777888888888888888888888887753 33 5667777777888888888888888877753 335667
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 124 YSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILING 165 (376)
Q Consensus 124 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (376)
+..++.++...|++++|...|++..... +.+...+..+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 7777777778888888888887777664 3444444444433
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=3.1e-08 Score=67.99 Aligned_cols=97 Identities=8% Similarity=-0.102 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
..+..+...+.+.|++++|+..|++..+.. |.+...|..+..++...|++++|+..|++.++..+. +...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345566666777777777777777777664 556677777777777777777777777777766433 556666677777
Q ss_pred HhCCChHHHHHHHHHHHhc
Q 042039 97 CKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~ 115 (376)
...|++++|...+++.++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.82 E-value=4.1e-08 Score=68.28 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--Cc----hHhH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ--PS----VVTF 89 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 89 (376)
...|..+...+...|++++|+..|++..+.. +.+...+..++.++...|++++|...++++...... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456666777777777777777777776654 445666777777777777777777777776654211 11 4455
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
..+..++...|++++|...++++.+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666666666666666666664
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.80 E-value=1.1e-07 Score=66.00 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-------hhhHHH
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHD-------DVSYNI 161 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ 161 (376)
+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.... +.+ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHHH
Confidence 3344444444444444444444444432 2233444444444444455555555444444332 111 334445
Q ss_pred HHHHHHccCcHHHHHHHHHHHHH
Q 042039 162 LINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
++.++...|++++|...++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.78 E-value=3.6e-07 Score=63.34 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCh---hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc---hHhHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDV---VTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS---VVTFNVI 92 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 92 (376)
+..+...+...|++++|+..|+++.+.. +.+. .++..++.++...|++++|...|+++++..+. + ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 4455566667777777777777776653 3333 46666777777777777777777777665322 2 4456666
Q ss_pred HHHHHhCCChHHHHHHHHHHHhc
Q 042039 93 MDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
..++...|++++|...++++++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777777777777777665
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.1e-06 Score=75.02 Aligned_cols=198 Identities=9% Similarity=0.014 Sum_probs=120.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-C
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQRDVRPNA----------------FTYSTLMDGFCLTGKINRAEELFGSMESMGCK-H 154 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 154 (376)
-.+.+.+.|++++|.+.|..+++....... ..+..++..|...|++++|.+.+..+...-.. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 355667788888888888888875422111 12566777788888888888877776543111 1
Q ss_pred Ch----hhHHHHHHHHHccCcHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhccchHHHHHHHHHHHhcCC---
Q 042039 155 DD----VSYNILINGYCKNKEVEEALSLYREMVSK----GIKP-TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDV--- 222 (376)
Q Consensus 155 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 222 (376)
+. .+.+.+...+...|++++|..+++..... +..+ -..++..++..+...|++++|..++..+...-.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 13344455555677777887777776542 2222 245566777777777777777777776654311
Q ss_pred --CCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc----CCCch--HHHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 223 --AADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL----KCELD--IQAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 223 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
+....++...+..|...|++++|..+++++... ..++. ...+..++..+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112335666677777777777777777665431 11111 23455556666677777777777666544
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.76 E-value=1.2e-07 Score=64.90 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 042039 123 TYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMV 183 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (376)
.+..++.++...|++++|...|+++.... |.+...+..++.++...|++++|+..+++++
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 53 AWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333344444444443333332 2233333333334444444444444443333
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.73 E-value=8.5e-07 Score=75.72 Aligned_cols=199 Identities=9% Similarity=0.027 Sum_probs=146.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCCCch----------------HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-
Q 042039 56 SLIHGLCHANDWNEAKRLFFEMMDQGVQPSV----------------VTFNVIMDELCKNGKMDEASRLLDLMVQRDVR- 118 (376)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 118 (376)
.-+..+.+.|++++|++.|.++++....... ..+..++..|...|++++|.+++..+......
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3466788899999999999999987433211 24678899999999999999999988763211
Q ss_pred CCh----hhHHHHHHHHHhcCcHHHHHHHHHHHHhc----C-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC--CC
Q 042039 119 PNA----FTYSTLMDGFCLTGKINRAEELFGSMESM----G-CKHDDVSYNILINGYCKNKEVEEALSLYREMVSK--GI 187 (376)
Q Consensus 119 ~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 187 (376)
++. .+...+...+...|+++.|..+++..... + ...-..++..++..|...|++++|..+++++... +.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 121 22334445555678999999999887543 1 1222457788999999999999999999988763 11
Q ss_pred --C-CCHhHHHHHHHHHHhccchHHHHHHHHHHHhcC--CCCC----cchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 042039 188 --K-PTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDD--VAAD----TSTYNTFIDGLCKNGYIVEAVELFRTLGI 254 (376)
Q Consensus 188 --~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (376)
. ....++..++..|...|++++|..++++..... ...+ ...+..++..+...+++++|...+..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 125678888999999999999999999876541 1111 23456667778889999999999988753
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.71 E-value=2.3e-07 Score=79.60 Aligned_cols=138 Identities=13% Similarity=-0.036 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
...|..+...+.+.|++++|+..|++..+.. +.+... . .+... +... .....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~-----------~-~~~~~----~~~~----~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGL-----------S-EKESK----ASES----FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSC-----------C-HHHHH----HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccC-----------C-hHHHH----HHHH----HHHHHHHHHHHH
Confidence 4478888999999999999999999998753 222100 0 00000 0000 012334444444
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
+.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. |.+..++..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554442 2234444455555555555555555555554443 33444445555555555544444
Q ss_pred H
Q 042039 176 L 176 (376)
Q Consensus 176 ~ 176 (376)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.71 E-value=1.1e-08 Score=88.21 Aligned_cols=125 Identities=11% Similarity=0.006 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC 97 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (376)
.|..+...+.+.|++++|++.|++..+.. +.+..+|..++.++.+.|++++|++.++++++.... +...+..+..++.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34455566778899999999999988775 567888999999999999999999999999887433 6778888888999
Q ss_pred hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCcHHHHHHHHH
Q 042039 98 KNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG--FCLTGKINRAEELFG 145 (376)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 145 (376)
..|++++|...++++++.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988864 2244555556555 777888899988888
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.70 E-value=8.7e-07 Score=61.35 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCCch---HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC---hhhHHHHH
Q 042039 55 NSLIHGLCHANDWNEAKRLFFEMMDQGVQPSV---VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPN---AFTYSTLM 128 (376)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 128 (376)
..++..+...|++++|...|+++.+..+. +. ..+..+..++...|++++|...++++++.. +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34455555566666666666665554222 22 344555555555566666666665555542 112 33445555
Q ss_pred HHHHhcCcHHHHHHHHHHHHhc
Q 042039 129 DGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
.++...|++++|...|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.69 E-value=2.2e-08 Score=86.30 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=101.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFC 132 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (376)
.+..++..+.+.|++++|++.|+++++.... +...+..+..++.+.|++++|...+++.++.. +.+...+..++.+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444556677889999999999999987433 68889999999999999999999999999874 446788999999999
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHccCcHHHHHHHHH
Q 042039 133 LTGKINRAEELFGSMESMGCKHDDVSYNILING--YCKNKEVEEALSLYR 180 (376)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 180 (376)
..|++++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998875 4566677777766 888899999999988
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.68 E-value=2.9e-07 Score=76.51 Aligned_cols=91 Identities=12% Similarity=-0.030 Sum_probs=54.0
Q ss_pred chHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042039 85 SVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILIN 164 (376)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (376)
+...|..+..++.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666666666666666666666543 2245566666666666666666666666666554 345555556666
Q ss_pred HHHccCcHHHHHH
Q 042039 165 GYCKNKEVEEALS 177 (376)
Q Consensus 165 ~~~~~~~~~~a~~ 177 (376)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555543
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.67 E-value=1.2e-07 Score=68.65 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhcccCC---Cc--hHHHHHHHHHHHHhCCChHHHHHHHhcccccC----CCC-CHH
Q 042039 228 TYNTFIDGLCKNGYIVEAVELFRTLGILKC---EL--DIQAYNCLIDGLCKSGRLEIALELFRSLPRRV----LVA-DVV 297 (376)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 297 (376)
++..++..+...|++++|...++++..... .+ ...++..++..+...|++++|...+++..+.. .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 345555556666666666666655543210 00 11356666777777777777777777654321 000 134
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEEN----AVA-PNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
.+..++..+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777788888888888888777643 111 1234567777888888888888888888764
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.65 E-value=8.3e-08 Score=65.41 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=58.7
Q ss_pred hcCChhHHHHHHHHhhhCC--CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHH
Q 042039 28 KEGFVDKAKALFLQMKGEN--INPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEA 105 (376)
Q Consensus 28 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 105 (376)
..|++++|+..|++..+.+ .+.+..++..++.++...|++++|+..|+++++..+. +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3567777777777777653 2344567777777777777777777777777776433 566677777777777777777
Q ss_pred HHHHHHHHhc
Q 042039 106 SRLLDLMVQR 115 (376)
Q Consensus 106 ~~~~~~~~~~ 115 (376)
...+++.+..
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.65 E-value=2.9e-07 Score=66.61 Aligned_cols=131 Identities=10% Similarity=0.075 Sum_probs=55.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-Cc----hHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CC----hh
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQ-PS----VVTFNVIMDELCKNGKMDEASRLLDLMVQRDVR-PN----AF 122 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 122 (376)
++..+...+...|++++|...+++....... ++ ..++..+...+...|++++|...+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444444555555555555444432100 00 123444444555555555555555544432100 00 22
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcC----C-CCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 042039 123 TYSTLMDGFCLTGKINRAEELFGSMESMG----C-KHDDVSYNILINGYCKNKEVEEALSLYREMV 183 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (376)
.+..++..+...|++++|...+++..... . +....++..+..++...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444445555555555555554443221 0 0012234444555555555555555555444
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.64 E-value=4.9e-07 Score=75.12 Aligned_cols=91 Identities=10% Similarity=-0.051 Sum_probs=74.2
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042039 120 NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFL 199 (376)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 199 (376)
+..++..++.++.+.|++++|...++++.+.. +.+..++..++.+|...|++++|+..|+++++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46778888899999999999999999998875 5677888889999999999999999999988862 335677777777
Q ss_pred HHHhccchHHHHH
Q 042039 200 GLFEIHQVEHALK 212 (376)
Q Consensus 200 ~~~~~~~~~~a~~ 212 (376)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=2.6e-06 Score=74.81 Aligned_cols=174 Identities=11% Similarity=-0.045 Sum_probs=130.5
Q ss_pred hcCC-hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC----------hHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 28 KEGF-VDKAKALFLQMKGENINPDVVTYNSLIHGLCHAND----------WNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 28 ~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
+.|. .++|++.++++...+ |.+..+|+.-..++...|+ ++++++.++++++..++ +..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3444 467789999988876 6677788877777777776 88899999998887655 777888888888
Q ss_pred HhCC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc----
Q 042039 97 CKNG--KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG-KINRAEELFGSMESMGCKHDDVSYNILINGYCKN---- 169 (376)
Q Consensus 97 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 169 (376)
.+.+ ++++++..++++++.+ +-+..+|.....++...| .++++.+.++++.+.. +.+..+|+....++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 8888 6689999999998875 447778888777777888 7888888888888776 56777887777666553
Q ss_pred ----------CcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccc
Q 042039 170 ----------KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ 206 (376)
Q Consensus 170 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (376)
+.++++++.+++++... +-+...|..+...+...+.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 45678888888877752 3356666666666655555
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.63 E-value=3.7e-07 Score=66.26 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESM 150 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (376)
.|..+..++.+.|++++|+..++++++.+ +.+...+..++.++...|++++|...|+++...
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34444444444444444444444444432 223344444444444444444444444444443
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.63 E-value=5.3e-07 Score=65.43 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhC--------C---------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGE--------N---------INPDVVTYNSLIHGLCHANDWNEAKRLFFEMM 78 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 78 (376)
...+......+.+.|++++|+..|++.... . .+.+..+|..+..++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567888899999999999999999998775 1 12345789999999999999999999999999
Q ss_pred hcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 042039 79 DQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRD 116 (376)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (376)
+..+. +...|..+..++...|++++|...|++.++..
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 97543 68899999999999999999999999999873
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.59 E-value=1.6e-07 Score=63.92 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=62.7
Q ss_pred hCCCHHHHHHHHHHhcccC--CCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHH
Q 042039 238 KNGYIVEAVELFRTLGILK--CELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKA 315 (376)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 315 (376)
..|++++|+..|+++...+ .+.+...+..++.++...|++++|+..++++.+. .|.+...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHH
Confidence 3567778888888877653 1334667778888888888888888888887766 455677788888888888888888
Q ss_pred HHHHHHHHHc
Q 042039 316 HDLFLDMEEN 325 (376)
Q Consensus 316 ~~~~~~~~~~ 325 (376)
+..++++.+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888765
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.58 E-value=9.4e-07 Score=62.44 Aligned_cols=97 Identities=14% Similarity=-0.027 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC------Ch-----hhHHHHHHHHhcCCChHHHHHHHHHHHhc-----
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINP------DV-----VTYNSLIHGLCHANDWNEAKRLFFEMMDQ----- 80 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 80 (376)
..+......+.+.|++++|+..|++.++..... +. ..|..+..++...|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 445666677777888888888888777653110 11 25666666666666666666666666553
Q ss_pred --CCCCchHhH----HHHHHHHHhCCChHHHHHHHHHHHh
Q 042039 81 --GVQPSVVTF----NVIMDELCKNGKMDEASRLLDLMVQ 114 (376)
Q Consensus 81 --~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (376)
.+. +...| .....++...|++++|+..|++.++
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 221 33344 5555555555555555555555544
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.57 E-value=3.9e-07 Score=74.88 Aligned_cols=149 Identities=7% Similarity=-0.048 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042039 51 VVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDG 130 (376)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (376)
...+..+...+...|++++|+..|++.+.. .|+... +...++.+++...+ ...++..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 345666677777777777777777777664 233221 11112222221111 01245556666
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhccchHH
Q 042039 131 FCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLG-LFEIHQVEH 209 (376)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 209 (376)
+.+.|++++|...++++.... +.+..++..++.+|...|++++|...|+++++.. +.+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666554 4455566666666666666666666666665531 1123333333333 223344555
Q ss_pred HHHHHHHHHhc
Q 042039 210 ALKLFEEMQRD 220 (376)
Q Consensus 210 a~~~~~~~~~~ 220 (376)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 55666665543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.53 E-value=3.8e-07 Score=74.95 Aligned_cols=149 Identities=12% Similarity=0.034 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
...+..+...+.+.|++++|+..|++..... |+.. .+...+++.++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 4567778888999999999999999988753 3322 122334444443322 12366777788
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHccCcHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILING-YCKNKEVEE 174 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 174 (376)
+.+.|++++|+..+++.++.. +.+...+..++.+|...|++++|...|+++.... +.+..++..+..+ ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887764 3457778888888888888888888888887664 4455566666555 334556677
Q ss_pred HHHHHHHHHHC
Q 042039 175 ALSLYREMVSK 185 (376)
Q Consensus 175 a~~~~~~~~~~ 185 (376)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77788777664
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.52 E-value=1.8e-05 Score=69.53 Aligned_cols=175 Identities=10% Similarity=-0.012 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC----------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 042039 65 NDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK----------MDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLT 134 (376)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (376)
...++|++.+++++..++. +..+|+.-..++...|+ +++++..++.+++.. +-+..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456789999999987554 66777777777777666 899999999999875 34778888888888888
Q ss_pred C--cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-cHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-------
Q 042039 135 G--KINRAEELFGSMESMGCKHDDVSYNILINGYCKNK-EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI------- 204 (376)
Q Consensus 135 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 204 (376)
+ +++++.+.++++.+.. +.+..+|+.-..++.+.| .++++++.++++++.. +-+..+|......+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 7799999999999887 678888888888888888 8899999999988864 34677777777766653
Q ss_pred -------cchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHH
Q 042039 205 -------HQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVE 244 (376)
Q Consensus 205 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (376)
+.++++.+.+..++... |.+..+|......+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55678888888887765 5677778777777777666433
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.49 E-value=2.7e-06 Score=60.11 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCCCChhhH----HHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 123 TYSTLMDGFCLTGKINRAEELFGSMESM-------GCKHDDVSY----NILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
.|..+..++...|++++|+..+++.+.. . |.+...| ...+.++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666666666666666666654 4 3445566 6677777777777777777777665
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=1.4e-05 Score=55.91 Aligned_cols=110 Identities=10% Similarity=-0.058 Sum_probs=60.3
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHh----CCChHHHH
Q 042039 31 FVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCK----NGKMDEAS 106 (376)
Q Consensus 31 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 106 (376)
++++|++.|++..+.+ .+.. . +...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666555 2222 2 5555555555666666666665542 44555555555555 55566666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHhcC
Q 042039 107 RLLDLMVQRDVRPNAFTYSTLMDGFCL----TGKINRAEELFGSMESMG 151 (376)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 151 (376)
.+|++..+.| ++..+..+...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 34445555555555 455555555555555543
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.40 E-value=1.6e-06 Score=74.35 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhc-----C--CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 123 TYSTLMDGFCLTGKINRAEELFGSMESM-----G--CKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
+++.++..|...|++++|+.+++++... | .|....+...+..++...+.+++|..+|..+++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444444221 1 111222334444555555555555555555544
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.39 E-value=3.2e-06 Score=72.48 Aligned_cols=126 Identities=9% Similarity=-0.015 Sum_probs=91.9
Q ss_pred HHHhCCChHHHHHHHHHHHhc---CCCC----ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhc-----C--CCCChhhHH
Q 042039 95 ELCKNGKMDEASRLLDLMVQR---DVRP----NAFTYSTLMDGFCLTGKINRAEELFGSMESM-----G--CKHDDVSYN 160 (376)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 160 (376)
.+..+|++++|+.++++.++. -..+ ...+++.++..|...|++++|..++++.... | .|....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888777652 1112 2456788888888888888888888876542 2 233455789
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHC-----CC-CCC-HhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 161 ILINGYCKNKEVEEALSLYREMVSK-----GI-KPT-VVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
.|+..|...|++++|..+++++++. |. .|+ ..+...+..++...+.+++|..++..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988752 21 122 445566777888899999999999988764
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.39 E-value=1.6e-05 Score=55.70 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCcHHHHH
Q 042039 66 DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL----TGKINRAE 141 (376)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 141 (376)
++++|.+.|++..+.|.. ... +...|...+..++|..+|++..+.+ +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 566677777776665522 222 5555555566666777776666653 45566666666665 56666777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCC
Q 042039 142 ELFGSMESMGCKHDDVSYNILINGYCK----NKEVEEALSLYREMVSKG 186 (376)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 186 (376)
.+|++..+.+ ++.++..|..+|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7766666653 45556666666666 566666666666666654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.3e-06 Score=58.60 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=57.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc------hH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS------VV 87 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 87 (376)
++...|..+...+...|++++|+..|++..+.. +.+..++..++.++...|++++|++.+++.++.... + ..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 79 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSK 79 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 345567777777777777777777777777664 556677777777777777777777777777765322 2 33
Q ss_pred hHHHHHHHHHhCCChHHHH
Q 042039 88 TFNVIMDELCKNGKMDEAS 106 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~ 106 (376)
.+..+..++...|+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 4444444554444444433
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.3e-07 Score=61.00 Aligned_cols=95 Identities=12% Similarity=0.033 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc------HHH
Q 042039 260 DIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN------VII 333 (376)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 333 (376)
+...+..++..+...|++++|...|+++.+. .+.+...+..++.++...|++++|+..++++++.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 4566777778888888888888888887765 4456777788888888888888888888888775322 2 445
Q ss_pred HHHHHHHHhhcCChhhHHHHHHH
Q 042039 334 FVTLIHGFVRINKPSKVIELLHK 356 (376)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~ 356 (376)
+..+..++...|+++.|...+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 56666666666766666554443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.35 E-value=4.5e-06 Score=56.41 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=62.1
Q ss_pred hHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHH
Q 042039 33 DKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLM 112 (376)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (376)
++|+..|++..+.. +.+...+..++.++...|++++|+..|++.++.... +...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677777777665 567778888888888888888888888888876433 5667777888888888888888888887
Q ss_pred Hhc
Q 042039 113 VQR 115 (376)
Q Consensus 113 ~~~ 115 (376)
++.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.32 E-value=4.9e-06 Score=53.36 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
...|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445555555555556666665555555443 334455555555555555555555555555554
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.28 E-value=2.7e-06 Score=59.96 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-----------CcHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042039 137 INRAEELFGSMESMGCKHDDVSYNILINGYCKN-----------KEVEEALSLYREMVSKGIKPTVVTYNTLF 198 (376)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 198 (376)
+++|+..|++..+.. |....+|..++.+|... |++++|++.|+++++ +.|+...|...+
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 346666666666654 44555666666666655 367777777777776 345554444333
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.26 E-value=2.6e-06 Score=60.10 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=60.7
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCh----------HHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 27 CKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDW----------NEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 27 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
.+.+.+++|++.+++..+.+ |.+...|..+..++...+++ ++|+..|++.++..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 35566888888888888776 66788888888888877765 4777777777776433 556677777777
Q ss_pred HhCC-----------ChHHHHHHHHHHHhc
Q 042039 97 CKNG-----------KMDEASRLLDLMVQR 115 (376)
Q Consensus 97 ~~~~-----------~~~~a~~~~~~~~~~ 115 (376)
...| ++++|...|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 566666666666654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.25 E-value=1.4e-05 Score=51.20 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 042039 260 DIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIH 339 (376)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (376)
+...+..++..+...|++++|...+++..+. .+.+...+..++.++...|++++|...++++.+... .+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 4456667777777777777777777777655 344566777777777777777777777777776532 24555555555
Q ss_pred HHhh
Q 042039 340 GFVR 343 (376)
Q Consensus 340 ~~~~ 343 (376)
.+.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.24 E-value=8.8e-06 Score=54.93 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 105 ASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
+...+++.++.. +.+...+..++..+...|++++|...|+++.... +.+...+..++.++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 2234455555555555555555555555555543 33444555555555555555555555555544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.16 E-value=8e-06 Score=53.57 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
+...|..+...+.+.|++++|+..|+++.+.+ +.+..+|..+..+|...|++++|.+.|++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566677777777777777777777776654 445666777777777777777777777766543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.05 E-value=3.1e-05 Score=50.67 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 120 NAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
+...+..++.++...|++++|...|+++.+.. |.+..+|..++.+|...|++++|+..+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666666654 44555666666666666666666666666554
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.90 E-value=0.00046 Score=56.01 Aligned_cols=144 Identities=12% Similarity=0.051 Sum_probs=90.1
Q ss_pred CCChhhHHHHHHHHh--cCC---ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHH----hCC-C---hHHHHHHHHHHHh
Q 042039 48 NPDVVTYNSLIHGLC--HAN---DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELC----KNG-K---MDEASRLLDLMVQ 114 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~-~---~~~a~~~~~~~~~ 114 (376)
+.+..+|...+++.. ..+ +..+|..+|+++++..+. ....+..+..++. ..+ . .......++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 556666666654433 222 356788888888776322 2333333332221 111 1 1111122222211
Q ss_pred -cCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhH
Q 042039 115 -RDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVT 193 (376)
Q Consensus 115 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (376)
...+.++.++..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.|+++... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1124567788877777777899999999999999885 67777888889999999999999999998884 566666
Q ss_pred HHH
Q 042039 194 YNT 196 (376)
Q Consensus 194 ~~~ 196 (376)
|..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.80 E-value=0.00096 Score=54.19 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=96.6
Q ss_pred CCCchHhHHHHHHHHH--hCC---ChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhc---C-----cHHHHHHHHHHH
Q 042039 82 VQPSVVTFNVIMDELC--KNG---KMDEASRLLDLMVQRDVRPN-AFTYSTLMDGFCLT---G-----KINRAEELFGSM 147 (376)
Q Consensus 82 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---~-----~~~~a~~~~~~~ 147 (376)
.+.+...|...+++.. ..+ +..+|..+|++.++.. |+ ...+..+..+|... + ........++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3557777777776543 333 3578999999999874 44 45555444444311 1 111111222222
Q ss_pred Hh-cCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCc
Q 042039 148 ES-MGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADT 226 (376)
Q Consensus 148 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 226 (376)
.. ...+.++.++..+...+...|++++|...+++++..+ |+...|..+...+...|++++|.+.+++....+ |..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCc
Confidence 11 1125677788888877777899999999999999964 788888888899999999999999999998874 455
Q ss_pred chHH
Q 042039 227 STYN 230 (376)
Q Consensus 227 ~~~~ 230 (376)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 5544
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.69 E-value=0.00033 Score=44.82 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=35.1
Q ss_pred CChhhHHHHHHHHHhcCC---hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 14 PNTVTYNTIIDGLCKEGF---VDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
+|+..+..+..++...++ .++|..++++.++.+ |.++.+...++..+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444555555555543333 455555555555554 445555555555555555555555555555554
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.64 E-value=0.00013 Score=61.54 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhc-----C-CCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQR-----D-VRPN-AFTYSTLMDGFCLTGKINRAEELFGSME 148 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 148 (376)
+++.++.+|...|++++|..++++.++. | ..|+ ..+++.++..|...|++++|+.+++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4555555555555555555555555431 1 1111 3345555555666666666666555553
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.63 E-value=0.00048 Score=44.63 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=49.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 042039 22 IIDGLCKEGFVDKAKALFLQMKGENINPDVV-TYNSLIHGLCHANDWNEAKRLFFEMMDQGV 82 (376)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (376)
....+.+.|++++|+..|+++.+.. +.+.. .+..++.++...|++++|.+.|++.++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4566778899999999999888765 55677 888888889999999999999999888643
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.62 E-value=0.00031 Score=59.34 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=45.6
Q ss_pred HhcCCChHHHHHHHHHHHhcC---CCC----chHhHHHHHHHHHhCCChHHHHHHHHHHHhc-----C-CCCC-hhhHHH
Q 042039 61 LCHANDWNEAKRLFFEMMDQG---VQP----SVVTFNVIMDELCKNGKMDEASRLLDLMVQR-----D-VRPN-AFTYST 126 (376)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~ 126 (376)
+...|++++|+.++++.++.. ..| ...+++.++.+|...|++++|+.++++++.. | ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334556666666665555421 111 1234555566666666666666666555431 1 1111 334555
Q ss_pred HHHHHHhcCcHHHHHHHHHHHH
Q 042039 127 LMDGFCLTGKINRAEELFGSME 148 (376)
Q Consensus 127 l~~~~~~~~~~~~a~~~~~~~~ 148 (376)
++..|...|++++|+.+++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666553
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.62 E-value=0.00021 Score=46.45 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDV-SYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
+..+...|++++|...++++.+.. +.+.. .+..++.++...|++++|...|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555555555443 33444 5555555555555555555555555543
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.61 E-value=3.7e-08 Score=81.18 Aligned_cols=265 Identities=12% Similarity=0.148 Sum_probs=186.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDE 95 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (376)
+..|..|..+..+.|+..+|++.|- +. .|+..|..++....+.|.+++-++.+...++..- ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4568888888888888888877653 22 2566778888888888888888888877665522 44444677888
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHH
Q 042039 96 LCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA 175 (376)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (376)
|++.++..+..+++ ..||..-...++.-|...|.++.|.-+|..+. -|..|..++.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 88888876644433 24566666778888888888887777765433 244566777888888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccc
Q 042039 176 LSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGIL 255 (376)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (376)
.+.-++ ..++.||..+..+|...+++..|.-.--.++- .+.-+..++..|...|.+++-+.+++.....
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 765443 23678899999999999998877655444432 2233445677788999999999999998755
Q ss_pred CCCchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCC-------CHHHHHHHHHHHHccCChhHHHH
Q 042039 256 KCELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVA-------DVVTYNIMIHGLCNDGQMDKAHD 317 (376)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~ 317 (376)
. ......|+.|+-.|++- ++++..+.++..-.+-.-| ....|..++-.|.+-.+++.|..
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4 44788899998888764 5677777776654331112 24567777778887777776643
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00035 Score=59.06 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=62.6
Q ss_pred HHHHHhCCChHHHHHHHhcccccC---CCC----CHHHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCCc-HHH
Q 042039 268 IDGLCKSGRLEIALELFRSLPRRV---LVA----DVVTYNIMIHGLCNDGQMDKAHDLFLDMEEN-----A-VAPN-VII 333 (376)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 333 (376)
+..+...|++++|+.++++.+... ..| ...+++.++.+|...|++++|+.+++++++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888887665321 112 2456777888888888888888888877642 2 1222 356
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 334 FVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888888888888888887763
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.55 E-value=0.00049 Score=58.09 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=30.4
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHC-----C-CCCC-HhHHHHHHHHHHhccchHHHHHHHHHHH
Q 042039 158 SYNILINGYCKNKEVEEALSLYREMVSK-----G-IKPT-VVTYNTLFLGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (376)
+++.++.+|...|++++|+.++++.+.. | ..|+ ..+++.+...|...|++++|..++++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4555555555555555555555554431 1 1111 3345555555555555555555555543
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.52 E-value=0.0026 Score=49.60 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHc-----cCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-cchH
Q 042039 137 INRAEELFGSMESMGCKH--DDVSYNILINGYCK-----NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI-HQVE 208 (376)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 208 (376)
...|...++++.+.. |. +...|..++..|.. .|+.++|.+.|++.++.+..-+..++......++.. ++.+
T Consensus 179 l~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 567778888888774 22 35578888888888 488899999999888853222367777777877774 8888
Q ss_pred HHHHHHHHHHhcCCC
Q 042039 209 HALKLFEEMQRDDVA 223 (376)
Q Consensus 209 ~a~~~~~~~~~~~~~ 223 (376)
.+.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 888888888887554
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.51 E-value=0.021 Score=44.61 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHHHHhcccccCCCCC---HHHHHHHHHHHHc-----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh-cCChh
Q 042039 278 EIALELFRSLPRRVLVAD---VVTYNIMIHGLCN-----DGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVR-INKPS 348 (376)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 348 (376)
..|...++++.+. .|+ ...|..++..|.. -|+.++|.++|+++++.+..-+..++......+++ .|+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4455555555543 222 3455555555555 26666666666666654322124455555555555 36666
Q ss_pred hHHHHHHHHHhCCCC--CchHHHH
Q 042039 349 KVIELLHKMKEKKVM--PDASIVS 370 (376)
Q Consensus 349 ~a~~~~~~~~~~~~~--p~~~~~~ 370 (376)
++.+.+++....... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 666666666655544 5544443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.46 E-value=0.0015 Score=41.71 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=39.9
Q ss_pred CCChhhHHHHHHHHhcCCC---hHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 48 NPDVVTYNSLIHGLCHAND---WNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
+.++..+..+..++...++ .++|..++++.++..+. +......+...+...|++++|...|+.+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455566666655543333 56666666666665333 4555666666666666666666666666655
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.46 E-value=0.00098 Score=46.48 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=52.4
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCC---ChHHHHHHHHHHHhcCCCC--chHhHHHHHHHHHhCCChHHHH
Q 042039 32 VDKAKALFLQMKGENINPDVVTYNSLIHGLCHAN---DWNEAKRLFFEMMDQGVQP--SVVTFNVIMDELCKNGKMDEAS 106 (376)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 106 (376)
...+.+.|.+..+.+ +++..+...+..++++.+ +.++++.+++.+.+.. .| +...+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445555566555555 466677777777777766 5557777777776653 12 3445556666667777777777
Q ss_pred HHHHHHHhc
Q 042039 107 RLLDLMVQR 115 (376)
Q Consensus 107 ~~~~~~~~~ 115 (376)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777765
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.33 E-value=0.003 Score=44.07 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHccCcHHHHHHHH
Q 042039 104 EASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG---KINRAEELFGSMESMGCK-HDDVSYNILINGYCKNKEVEEALSLY 179 (376)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 179 (376)
.+.+-|.+..+.+ +++..+...+..++++++ +++++..+++.+.+...| .....+..+.-+|.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444444443 245555555666666655 455666666665554311 13445555566666666666666666
Q ss_pred HHHHH
Q 042039 180 REMVS 184 (376)
Q Consensus 180 ~~~~~ 184 (376)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66666
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.24 E-value=0.026 Score=52.25 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 042039 90 NVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 169 (376)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (376)
..++..+.+.|.++.|.++.+ +.. .-.......|+++.|.++.+.+ .+...|..++..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 444555555566555554432 110 1122334556666666654321 3445666666666666
Q ss_pred CcHHHHHHHHHHH
Q 042039 170 KEVEEALSLYREM 182 (376)
Q Consensus 170 ~~~~~a~~~~~~~ 182 (376)
++++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666666666654
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.22 E-value=0.0034 Score=41.12 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGEN------INPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
+...+..+...+.+.|++..|...|+...+.. ..+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666554421 1223445555555555666666666655555554
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.16 E-value=0.0087 Score=41.18 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=22.2
Q ss_pred CChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 042039 275 GRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENA 326 (376)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (376)
++.++|.++|+.++...... ...|...++.-.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 44455555554443321111 3333333444444555555555555554443
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.12 E-value=0.014 Score=40.21 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=58.4
Q ss_pred CChhhHHHHHHHHHccCcH------HHHHHHHHHHHHCCCCCCHh-HHHHHHH------HHHhccchHHHHHHHHHHHhc
Q 042039 154 HDDVSYNILINGYCKNKEV------EEALSLYREMVSKGIKPTVV-TYNTLFL------GLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 220 (376)
.+..+|-..+...-+.|++ ++..++|+++... ++|+.. .|...+. .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445555555555555555 5666666666654 444311 1111110 112346777777777777654
Q ss_pred CCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCc
Q 042039 221 DVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCEL 259 (376)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (376)
+ +.-...+...++.-.+.|+...|.+++.+....+..|
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 2225555555666667788888888887777766553
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.12 E-value=0.0079 Score=39.29 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC------CCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 50 DVVTYNSLIHGLCHANDWNEAKRLFFEMMDQG------VQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
+..-+..++..+...|++..|...|+.+.+.. ..+....+..+..++.+.|+++.|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556677778888888888888887776641 1224556677777777777777777777777765
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.035 Score=51.45 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=98.3
Q ss_pred HHHHHhcCcHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccc
Q 042039 128 MDGFCLTGKINRAEE-LFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ 206 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (376)
.......+++++|.+ ++..+ ++......++..+.+.|.++.|+++.+... .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 344455777877766 44211 112233677777778888888876653211 11334456788
Q ss_pred hHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHHhc
Q 042039 207 VEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELFRS 286 (376)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (376)
++.|.++.+.+ .+...|..++..+.+.++++.|++.|.++.. +..+...+...|+.+...++.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 88888775432 3567788888888888888888888888652 22344455557777776666555
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 042039 287 LPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDME 323 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (376)
+...+. +.....+|.+.|++++|++++.++.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 544321 2334455667888888888876654
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.91 E-value=0.00012 Score=60.87 Aligned_cols=217 Identities=11% Similarity=0.090 Sum_probs=128.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 14 PNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 14 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
-|+..|..++....+.|++++-+..+....+.. .++..=+.|+.+|++.++..+-.+++ . .|+..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHH
Confidence 467789999999999999999999998777653 34445567899999999877654443 1 35555556666
Q ss_pred HHHHhCCChHHHHHHHHHHHhc--------------------CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 042039 94 DELCKNGKMDEASRLLDLMVQR--------------------DVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCK 153 (376)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 153 (376)
.-|...|.++.|.-+|..+-.. .-..++.||..+-.+|...+++.-|.-+--.++-..
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-- 229 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-- 229 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS--
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH--
Confidence 7777777777666665544321 012356778888888887777776655544443221
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHHHHHHHHHhc-CCC------CCc
Q 042039 154 HDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFEEMQRD-DVA------ADT 226 (376)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~ 226 (376)
.-...++..|-..|-+++-+.+++..+.. -......|+.|.-.|++- ++++..+.++....+ +++ ...
T Consensus 230 ---deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 230 ---DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp ---SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11223455566666666666666665532 233455555555555543 334444333322111 111 123
Q ss_pred chHHHHHHHHHhCCCHHHHH
Q 042039 227 STYNTFIDGLCKNGYIVEAV 246 (376)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~ 246 (376)
..|..++-.|.+-.+++.|.
T Consensus 305 hLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHH
T ss_pred hhHHHHHHHHhcchhHHHHH
Confidence 34555555555555555543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.052 Score=38.91 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=22.4
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHH
Q 042039 62 CHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLM 112 (376)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (376)
.+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554433 13445555555555555555555555443
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.07 Score=38.26 Aligned_cols=130 Identities=13% Similarity=0.127 Sum_probs=88.3
Q ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCCh
Q 042039 198 FLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRL 277 (376)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (376)
.......|+++.|.++.+.+ .+...|..++......|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456789999999887765 3677899999999999999999999988753 23444456667888
Q ss_pred HHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 278 EIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
+.-.++-+.....| -++.....+...|+++++.++|.+.-. .|... ......|-.+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 77776665554442 234455667788999999999865422 22111 1122356677788887766
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.83 E-value=0.0094 Score=39.95 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=50.6
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHH---HHHHHHHHHhcCCC-CchHhHHHHHHHHHhCCC
Q 042039 26 LCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNE---AKRLFFEMMDQGVQ-PSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 101 (376)
-........+.+.|......| .++..+-..+..++++..+..+ ++.+++.+.+.+.+ -.......+.-++.+.|+
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 333344555555555555444 3566666666666666665444 66666666654311 123344455556666677
Q ss_pred hHHHHHHHHHHHhc
Q 042039 102 MDEASRLLDLMVQR 115 (376)
Q Consensus 102 ~~~a~~~~~~~~~~ 115 (376)
+++|.+.++.+++.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777776666664
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.69 E-value=0.029 Score=37.64 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHH---HHHHHHHhcccCCC-chHHHHHHHHHHHHhCCChHHHHH
Q 042039 207 VEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVE---AVELFRTLGILKCE-LDIQAYNCLIDGLCKSGRLEIALE 282 (376)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 282 (376)
...+.+-+......+ .++..+-..++.++.++..... ++.+++.+...+.+ -.......++.++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333444444443333 2445555555555555554444 55555555443311 123334444445555555555555
Q ss_pred HHhcccc
Q 042039 283 LFRSLPR 289 (376)
Q Consensus 283 ~~~~~~~ 289 (376)
+++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.47 Score=40.31 Aligned_cols=256 Identities=12% Similarity=0.058 Sum_probs=133.6
Q ss_pred CChHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----ccC
Q 042039 100 GKMDEASRLLDLMVQR-----DVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYC----KNK 170 (376)
Q Consensus 100 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 170 (376)
++++.|.+.+..+.+. +..........++..|...++++...+.+..+.... .........++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCC
Confidence 6788888877666542 233345667778888888899988877776665432 112222333333222 222
Q ss_pred cHHH--HHHHHHHHHHC--C-CCC---CHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCC-----cchHHHHHHHHH
Q 042039 171 EVEE--ALSLYREMVSK--G-IKP---TVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAAD-----TSTYNTFIDGLC 237 (376)
Q Consensus 171 ~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~ 237 (376)
..+. -..+.+.+... | +.. .......+...+...|++.+|.+++..+...-.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 11111111110 1 111 112235667778888888888888888754311111 234566677788
Q ss_pred hCCCHHHHHHHHHHhcc----cCCCch--HHHHHHHHHHHHhCCChHHHHHHHhcccccC-CCCCHHHH----HHHHHHH
Q 042039 238 KNGYIVEAVELFRTLGI----LKCELD--IQAYNCLIDGLCKSGRLEIALELFRSLPRRV-LVADVVTY----NIMIHGL 306 (376)
Q Consensus 238 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~----~~l~~~~ 306 (376)
..+++..|..+++++.. ...+|+ ...+...+..+...+++.+|.+.|.++.... ...+...+ ..++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 88888888888877632 222222 2345666777777888888888777764321 11122211 1111111
Q ss_pred HccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc--CChhhHHHHHHH
Q 042039 307 CNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRI--NKPSKVIELLHK 356 (376)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~ 356 (376)
.-.+....-..++........-++...+..++.+|... .+++.+.+.|+.
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 12222222223333333222234667777777777553 345555554443
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.18 E-value=0.16 Score=34.37 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=29.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKV 362 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 362 (376)
.+...+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..++.++++++-++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444444455555544444443221 234444444455555555555555555555554443
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.14 E-value=0.84 Score=42.37 Aligned_cols=260 Identities=11% Similarity=0.005 Sum_probs=143.8
Q ss_pred HHHhcCCChHHHHHHHHHHHhcC--CCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCC-------CCChh--hHHHH
Q 042039 59 HGLCHANDWNEAKRLFFEMMDQG--VQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDV-------RPNAF--TYSTL 127 (376)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~--~~~~l 127 (376)
-+....|+.++++..+...+..+ ..+....-..+.-..+..|..+++..++...+...- .+... ....+
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 44566778888888776655421 112223333344455666766678887777665321 01111 12223
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcc
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDD--VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH 205 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (376)
+.++.-.++ +++.+.+..+.... .... .+-..++..+.-.|+.+....++..+.+. ...+..-...+.-++...|
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCC
Confidence 333333344 34555555554432 1111 12234556667788887777777777664 2222222333444455778
Q ss_pred chHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 042039 206 QVEHALKLFEEMQRDDVAADTS--TYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALEL 283 (376)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (376)
+.+.+..+++.+.... .|... ....+..+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888877642 22222 22344556778899877777888876542 22444444444455567777778888
Q ss_pred HhcccccCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHH
Q 042039 284 FRSLPRRVLVADVVTYNIMIHGLCNDGQM-DKAHDLFLDMEE 324 (376)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 324 (376)
++.+.+.+ .|....-..+..+....|.. .++++.+..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 87776652 34444333344444444443 578888888865
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.11 E-value=0.87 Score=42.28 Aligned_cols=260 Identities=12% Similarity=0.034 Sum_probs=146.5
Q ss_pred HHHhcCChhHHHHHHHHhhhCC--CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-------CCchHhHHHHHHH
Q 042039 25 GLCKEGFVDKAKALFLQMKGEN--INPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGV-------QPSVVTFNVIMDE 95 (376)
Q Consensus 25 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 95 (376)
+....|+.++++.+++.....+ ..+....-..+.-+.+..|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888988888776521 122233334445556666666678887777665321 0112222233333
Q ss_pred HHhCCC-hHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcH
Q 042039 96 LCKNGK-MDEASRLLDLMVQRDVRPNA--FTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 172 (376)
Q Consensus 96 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (376)
.+-.|. -+++...+..++... .+.. ..-..++..+.-.|+-+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333443 346666676666542 1111 122244555667788888888888776532 22222233344455578888
Q ss_pred HHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 042039 173 EEALSLYREMVSKGIKPTVVT--YNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFR 250 (376)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (376)
+.+..+++.+... ..|.... -..+.-+|+..|+.....+++..+.... ..+..-...+..+....|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888888764 2222221 1234456778889888888998887642 2233333334444555677777777777
Q ss_pred HhcccCCCchHHHHHHHHHHHHhCCCh-HHHHHHHhcccc
Q 042039 251 TLGILKCELDIQAYNCLIDGLCKSGRL-EIALELFRSLPR 289 (376)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 289 (376)
.+...+ .|....-..++.+....|.. .++...+..+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 665544 44544444444444444443 677888887764
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.06 E-value=0.18 Score=34.05 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 042039 262 QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVA 328 (376)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (376)
..+...+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445556666677777777777664332 4566677777777777777777777777777666643
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.59 E-value=0.12 Score=36.47 Aligned_cols=139 Identities=10% Similarity=0.088 Sum_probs=75.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCC-------hhhHHHHHHHHhcCCChHHHHHHHHHHHhcC--C
Q 042039 13 KPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGEN-INPD-------VVTYNSLIHGLCHANDWNEAKRLFFEMMDQG--V 82 (376)
Q Consensus 13 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~ 82 (376)
+-+..++-.-+..+...|.++.|+-+.+.+.... ..|+ ..++..++.++...|++..|...|++.++.. +
T Consensus 17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777888888888888777754431 1222 1255667788888888888888888875431 1
Q ss_pred CCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 042039 83 QPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNIL 162 (376)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (376)
.-+......+. . ...... ......+...-..+..+|.+.+++++|+.+++.+... ..++.+-..|
T Consensus 97 ~k~~s~~~~~~---~-~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~L 161 (167)
T 3ffl_A 97 SKTSKVRPSTG---N-SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLL 161 (167)
T ss_dssp ---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHH
T ss_pred hcCCCcccccc---c-cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHH
Confidence 10111110000 0 000000 0011234455566888888899999999988877554 2344444445
Q ss_pred HHHH
Q 042039 163 INGY 166 (376)
Q Consensus 163 ~~~~ 166 (376)
++.|
T Consensus 162 akLy 165 (167)
T 3ffl_A 162 ANLY 165 (167)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 5443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.23 Score=44.91 Aligned_cols=127 Identities=14% Similarity=0.104 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHhhhCCCCCChhhH--HHHHHHHhcCC-ChHHHHHHHHHHHhc------CCCC-ch-
Q 042039 19 YNTIIDGLCKEGF-VDKAKALFLQMKGENINPDVVTY--NSLIHGLCHAN-DWNEAKRLFFEMMDQ------GVQP-SV- 86 (376)
Q Consensus 19 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~- 86 (376)
-..++..+...++ ++.|+.+|+++.... |...++ ..++..+...+ +--+|.+++.+.++. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555666 588999999998764 333332 22333333333 223456666555431 1111 11
Q ss_pred ---------HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 042039 87 ---------VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSME 148 (376)
Q Consensus 87 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 148 (376)
.....-...+...|+++-|+.+-++..... +.+-.+|..|+.+|...|+++.|+-.+..+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122233455677899999999999998863 4457899999999999999999999988874
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.13 Score=46.42 Aligned_cols=125 Identities=15% Similarity=0.075 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHhcCCCCchHhHH--HHHHHHHhCC-ChHHHHHHHHHHHhc------CCCC-Ch--
Q 042039 55 NSLIHGLCHAND-WNEAKRLFFEMMDQGVQPSVVTFN--VIMDELCKNG-KMDEASRLLDLMVQR------DVRP-NA-- 121 (376)
Q Consensus 55 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-- 121 (376)
..++..+...++ .+.|..+|+++... .|...++. .++......+ +--+|.+++.+.++. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555666 57899999999886 33333322 2222222222 223455555554421 1111 11
Q ss_pred --------hhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 042039 122 --------FTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 182 (376)
Q Consensus 122 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (376)
.....-+..+...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122333555677899999999999999885 667889999999999999999999998876
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.25 E-value=0.15 Score=42.51 Aligned_cols=74 Identities=3% Similarity=-0.085 Sum_probs=52.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHh-----cCCCCChhhHHHH
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQ-----RDVRPNAFTYSTL 127 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 127 (376)
+...++..+...|++++++..+..+.... +.+...+..++.++...|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45556777777888888888887777653 33666788888888888888888888877654 4777776554433
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.12 E-value=1.5 Score=42.48 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 042039 21 TIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEM 77 (376)
Q Consensus 21 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 77 (376)
.++..+...+.++-+.++..... .++..-..++.++...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45555666676666665543332 23444456677788888888888888665
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=1.3 Score=37.53 Aligned_cols=260 Identities=11% Similarity=0.126 Sum_probs=148.6
Q ss_pred cCChhHHHHHHHHhhhC-----CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHH----HHHhC
Q 042039 29 EGFVDKAKALFLQMKGE-----NINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMD----ELCKN 99 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 99 (376)
.|+++.|++.+-.+.+. +..........++..|...|+|+...+.+.-+.+..... ......+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888877665432 234456678889999999999999888877665542221 122223332 22223
Q ss_pred CChHHH--HHHHHHHHh--cC-CCC---ChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHH
Q 042039 100 GKMDEA--SRLLDLMVQ--RD-VRP---NAFTYSTLMDGFCLTGKINRAEELFGSMESMGC-KHD----DVSYNILINGY 166 (376)
Q Consensus 100 ~~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 166 (376)
...+.. ..+.+.+.. .| +-. .......++..+...|++.+|..++..+...-. ..+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332221 111111111 11 111 122345688899999999999999999853211 111 23566778899
Q ss_pred HccCcHHHHHHHHHHHHH----CCCCCC--HhHHHHHHHHHHhccchHHHHHHHHHHHhcC-CCCCcchH----HHHHHH
Q 042039 167 CKNKEVEEALSLYREMVS----KGIKPT--VVTYNTLFLGLFEIHQVEHALKLFEEMQRDD-VAADTSTY----NTFIDG 235 (376)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~----~~l~~~ 235 (376)
...+++.+|..++.++.. ...+|+ ...+...+..+...+++..|.+.|.++.... ...+...+ ..++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999988753 222222 3445666777788899999988888775531 11122211 122222
Q ss_pred HHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhC--CChHHHHHHHhcccc
Q 042039 236 LCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKS--GRLEIALELFRSLPR 289 (376)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~ 289 (376)
..-.+..+.-..++........-++...+..++.+|... .+++.+.+.|.....
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 222222122222222222222234667788888888654 467888887776543
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.85 E-value=0.53 Score=31.77 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHhCCCh---HHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 259 LDIQAYNCLIDGLCKSGRL---EIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
|++.+-..++.++.+..+. .+++.+++.+.+.+.......+..+..++.+.|++++|.+..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444444444332111233344444445555555555555554444
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.75 E-value=0.44 Score=30.18 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 042039 314 KAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
+..+-+..+...++-|++.+....+++|.+.+++.-|.++++-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555544443
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.54 E-value=0.39 Score=39.97 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=84.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CChhhHHHHHHHHhcC-CChHHHHHHHHHHHhcC----C---CCc
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENIN-PDVVTYNSLIHGLCHA-NDWNEAKRLFFEMMDQG----V---QPS 85 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~----~---~~~ 85 (376)
+...+..|.-...+.|+.-...++.+.+-....+ ....+....+.-+.+. +.....-..+......| . ..|
T Consensus 32 ~~k~~~LL~~L~~~~g~~vsr~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~~D 111 (388)
T 2ff4_A 32 TPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCD 111 (388)
T ss_dssp SHHHHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGBH
T ss_pred ChHHHHHHHHHHhCCCCcccHHHHHHHhCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCccch
Confidence 4555665555566668877777777777654322 1223333333222211 11000000110000111 1 123
Q ss_pred hHhHHHHHHHH---HhCCChHHHHHHHHHHHhc--CCC-CCh----h--------------hHHHHHHHHHhcCcHHHHH
Q 042039 86 VVTFNVIMDEL---CKNGKMDEASRLLDLMVQR--DVR-PNA----F--------------TYSTLMDGFCLTGKINRAE 141 (376)
Q Consensus 86 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~~~-~~~----~--------------~~~~l~~~~~~~~~~~~a~ 141 (376)
...|..++... ...|+.+.+...+.+++.. |.. ++. . +...++..+...|+++++.
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44455554432 3458888999999888763 211 111 0 0112233344555666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH-----CCCCCCHh
Q 042039 142 ELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS-----KGIKPTVV 192 (376)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 192 (376)
..+..+.... |.+...+..++.++.+.|+..+|++.|+.+.+ .|+.|+..
T Consensus 192 ~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 192 AELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 5555555443 44555566666666666666666666555433 25555543
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.99 E-value=2.2 Score=41.33 Aligned_cols=144 Identities=18% Similarity=0.160 Sum_probs=86.6
Q ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC-C------------------
Q 042039 197 LFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK-C------------------ 257 (376)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~------------------ 257 (376)
++..+...+..+.+.++..-. +.++.....++.++...|++++|..+|+++...- .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455556665555433221 2344445667778888899999998888762110 0
Q ss_pred ---CchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 042039 258 ---ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADV----VTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN 330 (376)
Q Consensus 258 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (376)
..-+.-|..++..+.+.+.++.+.++-+.+.+...+.+. ..|..+...+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 001233566777778888888888777766543222221 2567777888888888888887776655322 3
Q ss_pred HHHHHHHHHHHhhcCCh
Q 042039 331 VIIFVTLIHGFVRINKP 347 (376)
Q Consensus 331 ~~~~~~l~~~~~~~g~~ 347 (376)
...+..|+...+..|..
T Consensus 971 ~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 44556666655555444
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.85 E-value=0.96 Score=30.52 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=32.2
Q ss_pred CCChhhHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 042039 118 RPNAFTYSTLMDGFCLTGK---INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 184 (376)
Q Consensus 118 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (376)
.|+..+-..++.++.++.+ ...++.+++.+...+.......+..+.-++.+.|++++|.+..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444432 334455555554443112233444455555555555555555555555
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.84 E-value=0.91 Score=30.58 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchHHHHHHH
Q 042039 314 KAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDASIVSMVV 373 (376)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 373 (376)
+..+-+..+...++-|++.+....+++|.+.+++.-|.++|+-.+.+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444444444455555555555555555555555555555555433 122233444443
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.80 E-value=1.2 Score=31.44 Aligned_cols=60 Identities=8% Similarity=-0.047 Sum_probs=28.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCC-CCCC-------HhHHHHHHHHHHhccchHHHHHHHHHHH
Q 042039 159 YNILINGYCKNKEVEEALSLYREMVSKG-IKPT-------VVTYNTLFLGLFEIHQVEHALKLFEEMQ 218 (376)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (376)
+..-+..+...+.++.|+-+...+.... ..|+ ..++..+..++...+++.+|...|++.+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344455555566666655555544321 1111 1133444455555555555555555543
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.34 E-value=1.3 Score=30.36 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=39.0
Q ss_pred CCChhhHHHHHHHHhcCCC---hHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 48 NPDVVTYNSLIHGLCHAND---WNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
.|+..+-..+..++++..+ ..+++.+++.+.+.+..........+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555556666665553 3356666666665433223444455555666666666666666666664
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.30 E-value=5.8 Score=35.27 Aligned_cols=142 Identities=11% Similarity=0.045 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCc-hHhHHHHHHHH
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPS-VVTFNVIMDEL 96 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 96 (376)
.|..... ..+.|++..+..+...+....+. .-..|..+...+ ......+...++++-. -.|- ...-...+..+
T Consensus 9 ~~~~a~~-a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~---~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 9 RYAQIKQ-AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANP---TLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCC---CChhHHHHHHHHHHHH
Confidence 3444444 44668888777776655432111 111222222211 1223444444443321 1122 22233445566
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc
Q 042039 97 CKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE 171 (376)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (376)
.+.+++.....++.. .+.+...-.....+....|+..+|......+-..+ ...+.....++..+.+.|.
T Consensus 83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 667777766554432 13344444556667777788777777777766555 3445566666666665443
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.17 E-value=1.1 Score=28.38 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 042039 105 ASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSM 147 (376)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 147 (376)
..+-++.+...+..|++.+....+++|.+.+++..|.++|+.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333334433444444444444444444444444444444443
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.14 E-value=2 Score=29.47 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=38.1
Q ss_pred CCChhhHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 118 RPNAFTYSTLMDGFCLTGK---INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 118 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
.|+..+-..++.++.++.. ..+++.+++.+...+..........+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455555555555555543 3355556666555432223344555666666677777777766666663
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.70 E-value=2.3 Score=35.88 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCChhhH----H
Q 042039 88 TFNVIMDELCKNGKMDEASRLLDLMVQRDVR--PNAFTYSTLMDGFCLTGKINRAEELFGSMESMGC-KHDDVSY----N 160 (376)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~----~ 160 (376)
+...++..|.+.|++++|.+.+.++...... .-...+...++.+...+++..+...+.++...-. .++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566777777788888888888777664222 2245666677777777788777777777643210 1122111 1
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHC
Q 042039 161 ILINGYCKNKEVEEALSLYREMVSK 185 (376)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (376)
.-+..+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1223344567777777777665543
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.44 E-value=5.4 Score=33.09 Aligned_cols=166 Identities=13% Similarity=0.013 Sum_probs=80.0
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHhc-CCCCC---hhhHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCCCChhhH-
Q 042039 86 VVTFNVIMDELCKNGKMDEASRLLDLMVQR-DVRPN---AFTYSTLMDGFCLT-GKINRAEELFGSMESMGCKHDDVSY- 159 (376)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 159 (376)
......+...|.+.|+.++..+++...... +.-+. ......++..+... +..+.-.++..+..+.. ...-..|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345666777888888888877777766432 00111 22344555555543 22333333333332211 0111222
Q ss_pred -----HHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHhccchHHHHHHHHHHHhc--CCCCCcc
Q 042039 160 -----NILINGYCKNKEVEEALSLYREMVSKGIKPT-----VVTYNTLFLGLFEIHQVEHALKLFEEMQRD--DVAADTS 227 (376)
Q Consensus 160 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 227 (376)
..++..|...|++.+|.+++.++.+.--..| ...+..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2456666677777777666666655311111 233444445566666666666666555433 1112222
Q ss_pred hH----HHHHHHHH-hCCCHHHHHHHHHHh
Q 042039 228 TY----NTFIDGLC-KNGYIVEAVELFRTL 252 (376)
Q Consensus 228 ~~----~~l~~~~~-~~~~~~~a~~~~~~~ 252 (376)
.. ..-+..+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 11122344 556666665555443
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.17 E-value=2.9 Score=35.28 Aligned_cols=98 Identities=7% Similarity=-0.096 Sum_probs=71.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhc--CCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc---CCCCChh--hH
Q 042039 52 VTYNSLIHGLCHANDWNEAKRLFFEMMDQ--GVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR---DVRPNAF--TY 124 (376)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~--~~ 124 (376)
.++..++..|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+...+.++... +..|+.. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36678899999999999999999999875 33444667888899999999999999999988642 2222221 11
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh
Q 042039 125 STLMDGFCLTGKINRAEELFGSMES 149 (376)
Q Consensus 125 ~~l~~~~~~~~~~~~a~~~~~~~~~ 149 (376)
..-+..+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1223344567889999888877654
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.52 E-value=5.6 Score=31.70 Aligned_cols=27 Identities=19% Similarity=-0.043 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHHHh
Q 042039 259 LDIQAYNCLIDGLCKSGRLEIALELFR 285 (376)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (376)
.++.....++..|.+.|++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 366777777777888888877777664
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.44 E-value=4.4 Score=31.32 Aligned_cols=55 Identities=27% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccC
Q 042039 201 LFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILK 256 (376)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (376)
..+.|+++.+++....-++.. |.|...-..+++.++-.|+++.|..-++...+..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 445566666666666665554 4555666666666666666666666666665543
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.17 E-value=4.3 Score=29.77 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=33.0
Q ss_pred CChHHHHHHHhcccccCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 042039 275 GRLEIALELFRSLPRRVLVAD-VVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAP 329 (376)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (376)
+...++..+|..|...++-.. ...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666665544322 3445556666666677777777777666665555
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.75 E-value=9.6 Score=30.69 Aligned_cols=83 Identities=7% Similarity=-0.048 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 042039 258 ELDIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTL 337 (376)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (376)
.-++.....++..|.+.+++.+|...|- . +..+++..+..++.-+...+...++ +...-..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa- 193 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARA- 193 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH-
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH-
Confidence 3477888888999999999999988873 2 2233345665555544444332222 2222222
Q ss_pred HHHHhhcCChhhHHHHHHHHHh
Q 042039 338 IHGFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~ 359 (376)
+-.|...++...|..+++...+
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 2335566777777777666553
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.52 E-value=9.5 Score=30.40 Aligned_cols=112 Identities=12% Similarity=0.096 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHH----HHHHHhcCCCCChhhHHHHHH
Q 042039 54 YNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRL----LDLMVQRDVRPNAFTYSTLMD 129 (376)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 129 (376)
|.++..=|.+.+++++|++++..-.. .+.+.|+...|.++ ++-+.+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444445566667776666544321 23344554444433 333334455666555555555
Q ss_pred HHHhcCcHH-HHHHHHHHH----HhcC--CCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 042039 130 GFCLTGKIN-RAEELFGSM----ESMG--CKHDDVSYNILINGYCKNKEVEEALSLYR 180 (376)
Q Consensus 130 ~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (376)
.+.....-+ .-.++++++ .+.+ ..-++.....++..|.+.+++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 554432111 011222222 1221 12366777888888888888888777664
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.49 E-value=8.5 Score=29.78 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=44.6
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 042039 24 DGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
..+.+.|++++|++....-++.. |.|...-..++..++-.|+|+.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45667888888888888777765 677888888888888888888888888887775
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.00 E-value=12 Score=31.04 Aligned_cols=168 Identities=11% Similarity=-0.014 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCC--C--CCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCCCchHhH-
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGEN--I--NPDVVTYNSLIHGLCHAN-DWNEAKRLFFEMMDQGVQPSVVTF- 89 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 89 (376)
..+...|...|.+.|+.++..+++......- + .........++..+.... ..+.-.++..+.++..-. ...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3567788899999999999999998765331 0 112345567777776643 333334444444332111 11222
Q ss_pred -----HHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCChh
Q 042039 90 -----NVIMDELCKNGKMDEASRLLDLMVQRDVRPN-----AFTYSTLMDGFCLTGKINRAEELFGSMESMG--CKHDDV 157 (376)
Q Consensus 90 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 157 (376)
..++..|...|++.+|..++.++.+.-...| ..++..-+..|...+++.++...+....... +.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2578889999999999999988876311112 3345566777888899999999988775432 223332
Q ss_pred hH----HHHHHHHH-ccCcHHHHHHHHHHHHH
Q 042039 158 SY----NILINGYC-KNKEVEEALSLYREMVS 184 (376)
Q Consensus 158 ~~----~~l~~~~~-~~~~~~~a~~~~~~~~~ 184 (376)
.. ..-+..+. ..++|..|...|-+..+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 22 22234456 78899999888877654
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.79 E-value=7.6 Score=28.49 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 042039 137 INRAEELFGSMESMGCKH-DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP 189 (376)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (376)
...+..+|..|...++.. -+..|...+..+...|++.+|.++|+..++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445566666665554322 23344555555556666666666666666554444
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.39 E-value=17 Score=32.29 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHhcCCCCChhh----HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccchHHHH
Q 042039 136 KINRAEELFGSMESMGCKHDDVS----YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHAL 211 (376)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (376)
+.+.|...+....... ..+... ...++......+...++...+...... ..+.......+....+.++++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765433 222222 222233333344244555555554443 233333444444555678888888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhc
Q 042039 212 KLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLG 253 (376)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (376)
..|..+.... .........+.+++...|+.++|..+|+.+.
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8887775432 2234456667777778888888888887764
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.78 E-value=7.2 Score=26.40 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=36.6
Q ss_pred hHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 042039 277 LEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLI 338 (376)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (376)
.=+..+-++.+......|++......+++|.+.+++..|.++|+-+.... .+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 33445555555555566777777777777777777777777777666442 22334455444
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.32 E-value=15 Score=29.63 Aligned_cols=165 Identities=12% Similarity=0.097 Sum_probs=84.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHH----HHHHhcCCCCChhhHHHHH
Q 042039 53 TYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLL----DLMVQRDVRPNAFTYSTLM 128 (376)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 128 (376)
.|.++..=|.+.+++++|++++..-. ..+.+.|+...+.++. +-+.+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445555667777777777664432 1233444444443333 3333455566665555555
Q ss_pred HHHHhcCc--------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042039 129 DGFCLTGK--------INRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLG 200 (376)
Q Consensus 129 ~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (376)
..+..... .++|+.+=.+. .....-++.....++..|.+.+++.+|...|- . |..++...+..++..
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYE 176 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHH
Confidence 55554432 11222222221 11123466777888889999898888887773 1 333444666666555
Q ss_pred HHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 042039 201 LFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTL 252 (376)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (376)
+...+...++--+ ....+--|.-.++...|..+++..
T Consensus 177 w~~~~~~~e~dlf---------------iaRaVL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 177 WYKQDESHTAPLY---------------CARAVLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp HHHTSCGGGHHHH---------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCccHHHH---------------HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5444332221111 122223355566777776655443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.93 E-value=6.2 Score=24.98 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=20.9
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 042039 60 GLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR 115 (376)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (376)
.+.++|++++|..+.+.. ..||...|..+.. .+.|..+++..-+..+...
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344445555554443322 1344444433322 3444444444444444433
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.46 E-value=6.5 Score=24.92 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=7.0
Q ss_pred HHhcCCChHHHHHHH
Q 042039 60 GLCHANDWNEAKRLF 74 (376)
Q Consensus 60 ~~~~~~~~~~a~~~~ 74 (376)
.+.++|++++|..+.
T Consensus 49 SLmNrG~Yq~Al~l~ 63 (116)
T 2p58_C 49 SLMNRGDYASALQQG 63 (116)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHcchhHHHHHHhc
Confidence 344445555554443
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=83.19 E-value=9.4 Score=26.54 Aligned_cols=54 Identities=7% Similarity=0.160 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCchH
Q 042039 314 KAHDLFLDMEENAVAP-NVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPDAS 367 (376)
Q Consensus 314 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 367 (376)
++.++|..|..+|+-. -...|......+...|++++|.++|+.-++.+-.|-..
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3666666666655433 24455555566666666666666666666666565443
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.26 E-value=24 Score=30.48 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENI-NPD---VVTYNSLIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
..+|.+++.|...+.+++|..+..+..--.. .++ ..-+..++..+.-.+++.+|.+.+..+.+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455555666666666666666555531100 011 11122334455555556666555555544
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=80.46 E-value=13 Score=26.28 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHHHHhcccccCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 042039 280 ALELFRSLPRRVLVA-DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPN 330 (376)
Q Consensus 280 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (376)
+..+|..|...++-. -+..|...+..+-..|++.+|.++|+.-++.+-.|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 334444444433322 233344445555555555555555555555544443
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=79.45 E-value=17 Score=27.14 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=25.1
Q ss_pred HHHHHHhcccccCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 042039 279 IALELFRSLPRRVLVA-DVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAP 329 (376)
Q Consensus 279 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (376)
.+..+|..|...++-. -...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444555544443322 23344445555555556666666555555554444
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.98 E-value=15 Score=25.57 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHHHhccchHHHHHHHHHHHhc
Q 042039 175 ALSLYREMVSKGIKPT-VVTYNTLFLGLFEIHQVEHALKLFEEMQRD 220 (376)
Q Consensus 175 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (376)
+..+|..|..+|+-.. ...|......+...|++.+|.++|...++.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3344444444433221 233333444444444444444444444443
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.18 E-value=15 Score=23.30 Aligned_cols=78 Identities=13% Similarity=0.018 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 042039 66 DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFG 145 (376)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 145 (376)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|..+ +-.+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 45555555555554422 11111122234455666666665544332 4454444333 2345566666666665
Q ss_pred HHHhcC
Q 042039 146 SMESMG 151 (376)
Q Consensus 146 ~~~~~~ 151 (376)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555554
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.45 E-value=23 Score=25.04 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 042039 140 AEELFGSMESMGCKH-DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP 189 (376)
Q Consensus 140 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (376)
..++|..|...++-. -+..|...+..+-..|++.+|.++|+..++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334444444443322 22233444444444555555555555555444333
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.23 E-value=16 Score=23.22 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 042039 66 DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFG 145 (376)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 145 (376)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|..+. -.+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45566666555555432 11111122234556666666666554432 45555544332 345566666666665
Q ss_pred HHHhcC
Q 042039 146 SMESMG 151 (376)
Q Consensus 146 ~~~~~~ 151 (376)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555554
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.20 E-value=41 Score=27.46 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCC--hHHHHHHHhcccccCCC
Q 042039 229 YNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGR--LEIALELFRSLPRRVLV 293 (376)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 293 (376)
...++.-|...++.++|...++.+...... ...+...+..++-+.++ .+...+++..+...++-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 455677788888888888888887643211 22333334444443332 34455666665555443
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.40 E-value=83 Score=29.91 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 042039 333 IFVTLIHGFVRINKPSKVIELLHKMKEK 360 (376)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (376)
.|..++..+.+.+-++.+.++-+...+.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 5666777777777777777777776654
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.41 E-value=70 Score=30.42 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=67.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 22 IIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
++..|...|.++-|.++...+ +.++..-..++.+|...|++++|.+.|+++- .|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------
Confidence 555666667666555443222 2344444567788888888888888887653 233211110000
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHcc
Q 042039 102 MDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGSMESMGCKHDDV----SYNILINGYCKN 169 (376)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 169 (376)
......++... +. ......-|..++..+-+.+.++.+.++-+.+.+.-.+.+.. .|..+.++.+..
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 00011111111 00 01123366778888888888888888887777643222332 555566555543
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.81 E-value=41 Score=25.47 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=14.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhh
Q 042039 22 IIDGLCKEGFVDKAKALFLQMK 43 (376)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~~~ 43 (376)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3456666677777777666554
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=63.98 E-value=35 Score=23.99 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHHcCCCC--cHHHHHHHHH------HHhhcCChhhHHHHHHHHHh
Q 042039 310 GQMDKAHDLFLDMEENAVAP--NVIIFVTLIH------GFVRINKPSKVIELLHKMKE 359 (376)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~ 359 (376)
|++-+|.++|+..=.....+ ....|..||+ ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555553332223 3334444444 12334555555555555543
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=62.00 E-value=49 Score=25.05 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=16.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh
Q 042039 57 LIHGLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~ 79 (376)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667777788888887777654
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.43 E-value=35 Score=22.86 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCcHHH
Q 042039 263 AYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ--MDKAHDLFLDMEENAVAPNVII 333 (376)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 333 (376)
....++.-|...|+.++|...++++..... ....+...+..++-+.++ .+....++..+.+.|+-+....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 345667777778888888888877642111 111222333333433322 3445666666665554433333
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.84 E-value=52 Score=24.62 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 042039 139 RAEELFGSMESMGCKH-DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP 189 (376)
Q Consensus 139 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (376)
....+|..|...++-. -+..|......+...|++.+|..+|+..++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444443322 22234444444444555555555555544443333
No 289
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=59.32 E-value=26 Score=24.64 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=29.0
Q ss_pred hCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc--CCCCchHhHHHHHHHHHhCCC
Q 042039 44 GENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQ--GVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 101 (376)
+.|.+.+. .-..++..+...++.-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 26 ~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33444432 2334445555555566666666666555 444455554444555555543
No 290
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=58.92 E-value=71 Score=25.84 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=11.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 042039 91 VIMDELCKNGKMDEASRLLDLM 112 (376)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~ 112 (376)
.++.-|...|+.++|.+.++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 3444455555555555555444
No 291
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=58.15 E-value=87 Score=26.65 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=67.6
Q ss_pred CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHH
Q 042039 30 GFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLL 109 (376)
Q Consensus 30 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 109 (376)
.+.+-|.++- .+.|.+-....|..-...+...|++++|.++--...+ |+-.+..|.+.+-.+-...|+..-.+.+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 5566555554 3445555566677777888888888888887655543 34446666655544444456666677777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 042039 110 DLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFG 145 (376)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 145 (376)
..+.+.| ..+..--..+++.-..+|+.+-.++++.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 7777665 4454433445555556666655555544
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.04 E-value=36 Score=23.66 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCcHHH
Q 042039 262 QAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ--MDKAHDLFLDMEENAVAPNVII 333 (376)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 333 (376)
.....++.-|...|+.++|...++++..... ....+...+..++-+.++ .+.+..++..+.+.++-+....
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3456677778888888888888887642111 112223333334444222 3446667777766655444433
No 293
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.11 E-value=52 Score=22.53 Aligned_cols=57 Identities=7% Similarity=0.052 Sum_probs=27.9
Q ss_pred hhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 42 MKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445444432 222333333334 5566666666666555555555554455555444
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=48.82 E-value=59 Score=21.91 Aligned_cols=58 Identities=12% Similarity=0.249 Sum_probs=30.9
Q ss_pred hhhCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 42 MKGENINPDVVTYNSLIHGLCHAN-DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
+.+.|.+.+. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4445544443 2233444444444 56667777777766655555555555555555544
No 295
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.91 E-value=65 Score=22.19 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=34.1
Q ss_pred hhhCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 42 MKGENINPDVVTYNSLIHGLCHAN-DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 44555554432 233444554554 566777777777776655566666555666666554
No 296
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=47.87 E-value=16 Score=20.48 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=11.7
Q ss_pred hHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 042039 33 DKAKALFLQMKGENINPDVVTYNSLIHGL 61 (376)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 61 (376)
++|.+.|-+|++..-.++..+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444444444332223334444444443
No 297
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=47.10 E-value=40 Score=24.58 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=8.4
Q ss_pred HHHhCCChHHHHHHHhc
Q 042039 270 GLCKSGRLEIALELFRS 286 (376)
Q Consensus 270 ~~~~~~~~~~a~~~~~~ 286 (376)
.|.+.|.+++|.+++++
T Consensus 126 VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHH
Confidence 34445555555555544
No 298
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.82 E-value=67 Score=21.96 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=31.6
Q ss_pred hhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 42 MKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
+.+.|.+.+. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445544443 2233444444455566677777777666555555555555555555543
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.19 E-value=63 Score=22.69 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=36.6
Q ss_pred HHHHHHHHHH-HhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCc
Q 042039 68 NEAKRLFFEM-MDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQR--DVRPNAFTYSTLMDGFCLTGK 136 (376)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 136 (376)
+.+.+-+.+. .+.|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3334333333 334666433 2344555556666667777777777665 444555555555555555553
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=45.92 E-value=1.4e+02 Score=25.34 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=28.9
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCc-----HHHHHHHHHHHHHCCCC
Q 042039 133 LTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE-----VEEALSLYREMVSKGIK 188 (376)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 188 (376)
+.++.+.|..++.+|.+.|..|....-..+..+.-.-|. ...|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 345677777777777776644443333344444433332 23444455555555433
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.43 E-value=70 Score=21.84 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=31.6
Q ss_pred HHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 77 MMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44556654433 23344444455556667777777766654445555555555555444
No 302
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.31 E-value=50 Score=22.42 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 55 NSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34445555555566667777776666555555555555555555543
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.91 E-value=79 Score=22.24 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=23.0
Q ss_pred cCChhHHHHHHHHhhhCCCCC--ChhhHHHHHH------HHhcCCChHHHHHHHHHHHh
Q 042039 29 EGFVDKAKALFLQMKGENINP--DVVTYNSLIH------GLCHANDWNEAKRLFFEMMD 79 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 79 (376)
.|++=+|-++|+.+-.....+ ....|..||+ ...+.|++.-|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355555555555554433222 2333444443 12234555555555554433
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.79 E-value=67 Score=21.99 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=29.0
Q ss_pred HHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 77 MMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
+.+.|.+++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344555544332 22333334444 5567777777766654445555544455554444
No 305
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.62 E-value=60 Score=21.70 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=20.9
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 59 HGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3333344445555555555554444444444444555555443
No 306
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.48 E-value=52 Score=22.00 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 100 GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333444444444444333333333333344444333
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.41 E-value=38 Score=25.71 Aligned_cols=55 Identities=13% Similarity=-0.007 Sum_probs=29.7
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCChh-------hHHHHHHHHh--cCCChHHHHHHHHHH
Q 042039 23 IDGLCKEGFVDKAKALFLQMKGENINPDVV-------TYNSLIHGLC--HANDWNEAKRLFFEM 77 (376)
Q Consensus 23 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 77 (376)
+...++.|+.+....+++.+.+.+...+.. -.+.|..+.. +.|+.+-+.-+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334556788888777777665554433322 1223333322 457766666666554
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.16 E-value=81 Score=21.88 Aligned_cols=65 Identities=8% Similarity=0.134 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHhcCCC
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAN--DWNEAKRLFFEMMDQGVQ 83 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 83 (376)
....++.-|...|+.++|...++++.... -....+...+..++-+.+ ..+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45667888888888888888888875211 011222333333443322 234566666666655544
No 309
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.89 E-value=1.7e+02 Score=25.44 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhcccCC-CchH---HHHHHHHHHHHhCCChHHHHHHHhcccc
Q 042039 228 TYNTFIDGLCKNGYIVEAVELFRTLGILKC-ELDI---QAYNCLIDGLCKSGRLEIALELFRSLPR 289 (376)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (376)
.++.+++.|...+.++.|..+..+..-... .++. .-+..+++.+.-.+++.+|.+.+..+.+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455555555666666666666555532110 1111 1122344555555666666666555443
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=42.71 E-value=80 Score=21.73 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=30.0
Q ss_pred hhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCC
Q 042039 42 MKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGK 101 (376)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (376)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445544332 2333444444555566667777776665555555555555555555543
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=42.26 E-value=82 Score=21.69 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 77 MMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44556554332 33444555555566677777777776654555555555555555544
No 312
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=41.84 E-value=1.7e+02 Score=25.24 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=51.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 042039 127 LMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE 203 (376)
Q Consensus 127 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (376)
++........++.|..+|..+.... |.+...|+.|+-.....|+.-+|.-.|-+.+.. ..|-..+..++...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 4444455566788888888888775 666678888888888788777777776666654 34556666666655543
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.72 E-value=1.3e+02 Score=23.90 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCcHHH
Q 042039 264 YNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ--MDKAHDLFLDMEENAVAPNVII 333 (376)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 333 (376)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.++-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 345566666677777777777766421110 11222223333333222 2345566666665554444333
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.00 E-value=80 Score=21.23 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHhcCCCCchHhHHHHHHHHHhCC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 77 MMDQGVQPSVVTFNVIMDELCKNG-KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 444566544332 33444444554 56677777777777655555555554555554444
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.90 E-value=53 Score=22.27 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCh
Q 042039 20 NTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDW 67 (376)
Q Consensus 20 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 67 (376)
..+++.+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 456677777777889999999999887666777777777777777643
No 316
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.80 E-value=1.2e+02 Score=23.06 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=24.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCcHHHHHHHHH
Q 042039 92 IMDELCKNGKMDEASRLLDLMVQRDVRPNAF---TYSTLMDGFCLTGKINRAEELFG 145 (376)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~ 145 (376)
.+...++.|+.+....++ +.|..++.. .-...+...+..|+.+-+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 445556777776554444 444333311 11234455566677655544443
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.06 E-value=85 Score=21.62 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=30.1
Q ss_pred HHhcCCCCchHhHHHHHHHHHhCC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042039 77 MMDQGVQPSVVTFNVIMDELCKNG-KMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTG 135 (376)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 135 (376)
+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 444555544332 23334444444 55567777777766654445555555555555444
No 318
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.84 E-value=58 Score=23.76 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=17.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhc
Q 042039 57 LIHGLCHANDWNEAKRLFFEMMDQ 80 (376)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~ 80 (376)
.+..|.+.|.+++|.+++++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 456788888888888888886654
No 319
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.35 E-value=1.2e+02 Score=22.28 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=9.1
Q ss_pred CChHHHHHHHHHHHhcC
Q 042039 100 GKMDEASRLLDLMVQRD 116 (376)
Q Consensus 100 ~~~~~a~~~~~~~~~~~ 116 (376)
.+.+.|+-++-+|++.|
T Consensus 21 SDpDAAly~LaRMl~~G 37 (201)
T 3bge_A 21 SAPDAALYWYARILTAG 37 (201)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555554
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.25 E-value=1.2e+02 Score=22.31 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=9.1
Q ss_pred CChHHHHHHHHHHHhcC
Q 042039 100 GKMDEASRLLDLMVQRD 116 (376)
Q Consensus 100 ~~~~~a~~~~~~~~~~~ 116 (376)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555555
No 321
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.99 E-value=89 Score=26.57 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCCc--------hHhH-HHHHHHHHhCCChHHHHHHHHHHHh
Q 042039 55 NSLIHGLCHANDWNEAKRLFFEMMDQGVQPS--------VVTF-NVIMDELCKNGKMDEASRLLDLMVQ 114 (376)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (376)
+.+...|.+.++.+.+..++..+...+..|+ ..+| ..+++.+...+++.+|.+.+..+.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4444555555555555555544444332111 1122 2234444555555555555555444
No 322
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.42 E-value=2.2e+02 Score=24.60 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=35.5
Q ss_pred cCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 042039 29 EGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDEL 96 (376)
Q Consensus 29 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (376)
...++.|...|.++.... |.+...|+.|+......|+.-+|.-.|-+.+.. ..|-..+...+...+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHH
Confidence 344556666666665554 445556666666666666555555555544443 234444444444443
No 323
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=34.69 E-value=1.6e+02 Score=22.75 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHH
Q 042039 55 NSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVI 92 (376)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (376)
..++...-+.+++++..+...++.+.+...+..--+.|
T Consensus 35 v~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLL 72 (261)
T 3ubw_A 35 VYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLL 72 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 33444444555555555555555554444444433333
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.08 E-value=1.2e+02 Score=21.42 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=9.4
Q ss_pred HHhcCChhHHHHHHHH
Q 042039 26 LCKEGFVDKAKALFLQ 41 (376)
Q Consensus 26 ~~~~g~~~~a~~~~~~ 41 (376)
.+..|+.+....+++.
T Consensus 12 A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 12 AANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHc
Confidence 3456666666666543
No 325
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.05 E-value=49 Score=18.51 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHHHhCCCCCc
Q 042039 313 DKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKMKEKKVMPD 365 (376)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 365 (376)
++.+..+..|- ..-+..+...++. ...|+.+.|+..+-.|...+..|+
T Consensus 10 ee~l~~L~emF---P~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMF---PNMDQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHC---SSSCHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 34444444442 2234444444433 236778888888887776666665
No 326
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.86 E-value=51 Score=18.93 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGL 61 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 61 (376)
++.+++.+.+..-.+.++..++++.+.| ..+...|..-.+.+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~L 46 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4444555555445555555555555554 33444444433333
No 327
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=33.64 E-value=81 Score=20.90 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 042039 16 TVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKR 72 (376)
Q Consensus 16 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 72 (376)
...|.-.|.....+++.+-|.++++-..+.| +.+.|...+..|...=+++-+++
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3445555555556666666666666666554 45555555555555555554443
No 328
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.89 E-value=90 Score=19.42 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=15.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHH
Q 042039 298 TYNIMIHGLCNDGQMDKAHDLFLDM 322 (376)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (376)
.+......+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445556666677777766655544
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.87 E-value=2.4e+02 Score=24.09 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 042039 205 HQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIALELF 284 (376)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (376)
.+.+-|.++. .+.|.+--...|..-...+...|++++|.++--.... |.--++.+.+.+-.+-..-|+..--+.+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 4444444433 2334444444555556666666666666666554332 11224444444433333344444455555
Q ss_pred hcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 285 RSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
..+.+.+. .+..--..+++.-..+|+.+-..+.+.+ ..+..+.. .--++ +..+..-|+.+|.+.
T Consensus 419 ~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEe-LGDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEE-LGDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHH-HHHHH----HHHCSHHHHHHHHHH
T ss_pred HHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHH-hHhhh----hhcCHHHHHHHHHHc
Confidence 55554432 2332223344444444444333333322 12222222 12222 333556666666655
No 330
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.35 E-value=1.5e+02 Score=25.18 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChh--------h-HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 042039 89 FNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAF--------T-YSTLMDGFCLTGKINRAEELFGSMES 149 (376)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 149 (376)
.+.++..|.+.++...+..+++.+...+..|+.. + ...+++.+...+++.+|.+.+..+..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4556677777777777777777766654422211 1 23345555666667777666665544
No 331
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.13 E-value=1.6e+02 Score=21.62 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=9.7
Q ss_pred CcHHHHHHHHHHHHhcC
Q 042039 135 GKINRAEELFGSMESMG 151 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~~ 151 (376)
.+.+.|+-++.+|++.|
T Consensus 21 SDpDAAly~LaRMl~~G 37 (201)
T 3bge_A 21 SAPDAALYWYARILTAG 37 (201)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555555
No 332
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.98 E-value=1e+02 Score=19.45 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC
Q 042039 315 AHDLFLDMEENAVAPNVIIFVTLIHGFVRIN 345 (376)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 345 (376)
|.++.++....|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4444455555555555555555555544433
No 333
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.48 E-value=1.5e+02 Score=21.33 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 042039 260 DIQAYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEE 324 (376)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (376)
++.+-...+.++...|..+ +...+..+.. .++..+-...+.++...+. .++...+..+.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444444444444444432 2222222222 1344444444444444443 334444444443
No 334
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.03 E-value=1.2e+02 Score=20.16 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--cHHHHHHHHHHHHHCCCC
Q 042039 125 STLMDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK--EVEEALSLYREMVSKGIK 188 (376)
Q Consensus 125 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 188 (376)
..++.-|...|+.++|.+.++++..-. -....+...+..+.-+.+ ..+....++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 445666666677777777776664210 011112223333333332 234566666666655544
No 335
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=28.80 E-value=1.6e+02 Score=21.15 Aligned_cols=154 Identities=13% Similarity=0.025 Sum_probs=84.5
Q ss_pred CCHhHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHH
Q 042039 189 PTVVTYNTLFLGLFEIHQVEHALKLFEEMQRDDVAADTSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLI 268 (376)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 268 (376)
++...-...+..+...+..+ +...+..+.. .++...-...+.++...++.+.. ..+..+.. .+++.+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 34555555555555555533 3333333333 23555555566666666654333 33333332 34566666677
Q ss_pred HHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChh
Q 042039 269 DGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPS 348 (376)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 348 (376)
.++...++.+.. ..+..+.. .++..+-...+.++...+.. ++...+..+.+ .++...-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 777777765433 33433433 35666666777777777764 45555555554 3566666666777777765 4
Q ss_pred hHHHHHHHHHh
Q 042039 349 KVIELLHKMKE 359 (376)
Q Consensus 349 ~a~~~~~~~~~ 359 (376)
++...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 55666666654
No 336
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.77 E-value=1.7e+02 Score=21.43 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=8.0
Q ss_pred CcHHHHHHHHHHHHhcC
Q 042039 135 GKINRAEELFGSMESMG 151 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~~ 151 (376)
.+.+.|+-++.+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 337
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=28.74 E-value=2e+02 Score=22.03 Aligned_cols=170 Identities=8% Similarity=-0.018 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcC-CChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHA-NDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
+..-.-.++...-+.+++++.......+...+...+..-.+.|-.+|-+. |....+.+++..+.+..-.........++
T Consensus 3 ~re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i 82 (248)
T 3uzd_A 3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMV 82 (248)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHH
Q ss_pred HHHHhC--CChHHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCc-----------------HHHHHHHHHHHHh---
Q 042039 94 DELCKN--GKMDEASRLLDLMVQRDVRPNAFTY--STLMDGFCLTGK-----------------INRAEELFGSMES--- 149 (376)
Q Consensus 94 ~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-----------------~~~a~~~~~~~~~--- 149 (376)
..|... ..+.....-.-.++...+-|...+- ..-+-.+--.|| .+.+.+.|+.+.+
T Consensus 83 ~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~ 162 (248)
T 3uzd_A 83 RAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISK 162 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCChhhHHHHHHHHHc-----cCcHHHHHHHHHHHHH
Q 042039 150 MGCKHDDVSYNILINGYCK-----NKEVEEALSLYREMVS 184 (376)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~ 184 (376)
..++|+......|+--|.- .+++++|..+-++..+
T Consensus 163 ~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 163 EHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 338
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.43 E-value=1.1e+02 Score=19.06 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=29.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH-----hhcCChhhHHHHHHHHHh
Q 042039 308 NDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGF-----VRINKPSKVIELLHKMKE 359 (376)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 359 (376)
..|++=+|.++++..=.....|....|..+++.. .+.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4477777777777765443334445566555422 245666 7777777654
No 339
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=27.64 E-value=2e+02 Score=21.76 Aligned_cols=170 Identities=8% Similarity=-0.014 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcC-CChHHHHHHHHHHHhcCCCCchHhHHHHH
Q 042039 15 NTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHA-NDWNEAKRLFFEMMDQGVQPSVVTFNVIM 93 (376)
Q Consensus 15 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (376)
+....-.++...-+.+++++......++...+...+..-.+.|..+|-.. |....+.+++..+.+..-.........++
T Consensus 4 ~re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i 83 (234)
T 2br9_A 4 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 83 (234)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHH
Q ss_pred HHHHhC--CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc-----------------HHHHHHHHHHHHhcC---
Q 042039 94 DELCKN--GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK-----------------INRAEELFGSMESMG--- 151 (376)
Q Consensus 94 ~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~~--- 151 (376)
.-|... .++.....-.-.+++..+-|....-..-+-.+--.|| .+.|.+.|+.+.+..
T Consensus 84 ~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 163 (234)
T 2br9_A 84 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 163 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred CCCChhhHHHHHHHHHc-----cCcHHHHHHHHHHHHH
Q 042039 152 CKHDDVSYNILINGYCK-----NKEVEEALSLYREMVS 184 (376)
Q Consensus 152 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~ 184 (376)
++|+......|+.-|.- .+++++|..+-++..+
T Consensus 164 L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 164 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 340
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.88 E-value=1e+02 Score=18.19 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=27.2
Q ss_pred hhhCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCC
Q 042039 42 MKGENINPDVVTYNSLIHGLCHAN-DWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNG 100 (376)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (376)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444322 23344444433 44555666666655544444455444444444443
No 341
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=26.86 E-value=2e+02 Score=21.63 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 042039 22 IIDGLCKEGFVDKAKALFLQ 41 (376)
Q Consensus 22 l~~~~~~~g~~~~a~~~~~~ 41 (376)
.+...++.|+.+....+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 44455677777666555543
No 342
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.50 E-value=2.6e+02 Score=22.80 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 042039 263 AYNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQ--MDKAHDLFLDMEENAVAPNVIIFVTLIHG 340 (376)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (376)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.++-+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3566777888889999999999887532111 12233344444444333 34567778777777666555444444443
Q ss_pred HhhcC----ChhhHHHHHHHHH
Q 042039 341 FVRIN----KPSKVIELLHKMK 358 (376)
Q Consensus 341 ~~~~g----~~~~a~~~~~~~~ 358 (376)
+.... +.-.|..++.++.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHHH
Confidence 33322 2334444444443
No 343
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.43 E-value=1.7e+02 Score=20.58 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=13.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Q 042039 126 TLMDGFCLTGKINRAEELFGSME 148 (376)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~ 148 (376)
.++.-|...++.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34555555566666666666543
No 344
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.86 E-value=2e+02 Score=21.27 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=7.8
Q ss_pred CcHHHHHHHHHHHHhcC
Q 042039 135 GKINRAEELFGSMESMG 151 (376)
Q Consensus 135 ~~~~~a~~~~~~~~~~~ 151 (376)
.+.+.|+-++.+|.+.|
T Consensus 49 SDpDAALywLaRMl~~G 65 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAG 65 (213)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.16 E-value=2.7e+02 Score=22.43 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhh
Q 042039 18 TYNTIIDGLCKEGFVDKAKALFLQMK 43 (376)
Q Consensus 18 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 43 (376)
....++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35678888999999999999888875
No 346
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=24.76 E-value=2.4e+02 Score=21.74 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCcHHHHHHHHHHHHh
Q 042039 87 VTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCL-TGKINRAEELFGSMES 149 (376)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 149 (376)
.....++...-+.+++++.....+.+.+.+...+..--+.+..+|-. .|....+.+++..+.+
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieq 95 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHH
Confidence 34445566667788888888888888887766666555555555532 2445556666655543
No 347
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=24.43 E-value=1.6e+02 Score=21.44 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=40.7
Q ss_pred ChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHH
Q 042039 276 RLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLH 355 (376)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (376)
+......+.+.++.. ..+-.-...++.++.+.|++++|.+++.++.+. . ..... ..+.+++.-|.-++.
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~-----~---q~~~~-~~~i~~P~la~lLl~ 82 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID-----A---KHESK-LSNLKTPHLAFDFLT 82 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----H---HHHHH-HHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H---HHHHH-HHhCCCHHHHHHHHH
Confidence 344444444444432 123444456778888888999988888887653 1 11111 445666666655555
Q ss_pred HHH
Q 042039 356 KMK 358 (376)
Q Consensus 356 ~~~ 358 (376)
+..
T Consensus 83 K~~ 85 (192)
T 1ixm_A 83 FNW 85 (192)
T ss_dssp GGG
T ss_pred HHH
Confidence 543
No 348
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.11 E-value=1e+02 Score=23.21 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCchHh-------HHHHHHHHH--hCCChHHHHHHHHHHH
Q 042039 58 IHGLCHANDWNEAKRLFFEMMDQGVQPSVVT-------FNVIMDELC--KNGKMDEASRLLDLMV 113 (376)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~ 113 (376)
+...++.|+.+....+++.+.+.+..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3445567888888788887777665544322 122322221 5677777666666543
No 349
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.10 E-value=1.4e+02 Score=20.97 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccc
Q 042039 263 AYNCLIDGLCKSGRLEIALELFRSLP 288 (376)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (376)
....++.-|...++.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34567777888899999999888865
No 350
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.30 E-value=1e+02 Score=16.85 Aligned_cols=36 Identities=8% Similarity=0.203 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCC--hhhHHHHHHHH
Q 042039 317 DLFLDMEENAVAPNVIIFVTLIHGFVRINK--PSKVIELLHKM 357 (376)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~ 357 (376)
+.++.+++.|..+.. .-.+..+.|. .+.|++++.+|
T Consensus 11 qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHh
Confidence 445555665555432 2233445555 78888888887
No 351
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.26 E-value=2.8e+02 Score=22.00 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCC--hHHHHHHHHHHH
Q 042039 19 YNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHAND--WNEAKRLFFEMM 78 (376)
Q Consensus 19 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 78 (376)
...++.-|...|+.++|...++++.... ........++......++ -+.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999999998875321 122233333443333332 233444555554
No 352
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.08 E-value=3.4e+02 Score=22.92 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=37.0
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhccc-----hHHHHHHHHHHHhcCC
Q 042039 168 KNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ-----VEHALKLFEEMQRDDV 222 (376)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 222 (376)
+.++.+.|+..+.+|++.|..|....-..+..+....|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 467899999999999998877665555555555555554 3345566666666663
No 353
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.12 E-value=2.7e+02 Score=21.37 Aligned_cols=185 Identities=5% Similarity=0.029 Sum_probs=81.7
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhc
Q 042039 128 MDGFCLTGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTV---VTYNTLFLGLFEI 204 (376)
Q Consensus 128 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 204 (376)
+...+..|+.+-+..+++. |..++...-...+...+..|+.+-+ +.+++.|..++. .-.+. +...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~-L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTA-LYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcH-HHHHHHc
Confidence 4445667888766666554 3222222112334455566765544 344444544432 11222 2333455
Q ss_pred cchHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHhcccCCCchHHHHHHHHHHHHhCCChHHHH
Q 042039 205 HQVEHALKLFEEMQRDDVAAD---TSTYNTFIDGLCKNGYIVEAVELFRTLGILKCELDIQAYNCLIDGLCKSGRLEIAL 281 (376)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 281 (376)
|+.+-+.-+++. +..++ ..-+...+...+..|+.+-+..+++.-... .+...-...+...+..|+.+-+.
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHH
Confidence 666555444443 32222 111123344445667766555554442211 11101122333445677777766
Q ss_pred HHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHH
Q 042039 282 ELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVII 333 (376)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (376)
.+++.-...... +..-....+...+..|+. ++.+.+.+.|..++...
T Consensus 179 ~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 179 LLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 666543222111 111111112223334443 44555566676666543
No 354
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.98 E-value=1.5e+02 Score=18.45 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHH
Q 042039 37 ALFLQMKGENINPDVVTYNSLIHGLCHANDWNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEAS 106 (376)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 106 (376)
.+++.+.+.++- +..-...+- ......+.++|.++++.+...| +.+|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~-~~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQ-RAGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHH-TSTTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHH-hccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 366666666532 222222211 1001246778888888877664 346677777776666655443
No 355
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.95 E-value=98 Score=17.27 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=14.4
Q ss_pred cCChhhHHHHHHHHHhCCCCC
Q 042039 344 INKPSKVIELLHKMKEKKVMP 364 (376)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~p 364 (376)
.-+++.|...|.++...|--|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP 53 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIP 53 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 447788888888887665333
No 356
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.87 E-value=2.4e+02 Score=20.62 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=13.5
Q ss_pred HHHHhcCChhHHHHHHHHhhhCC
Q 042039 24 DGLCKEGFVDKAKALFLQMKGEN 46 (376)
Q Consensus 24 ~~~~~~g~~~~a~~~~~~~~~~~ 46 (376)
...+..|+.+-...+++.+.+.+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 34445677776666666554444
No 357
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.53 E-value=2.8e+02 Score=21.29 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=8.2
Q ss_pred HHHhcCcHHHHHHHHHH
Q 042039 130 GFCLTGKINRAEELFGS 146 (376)
Q Consensus 130 ~~~~~~~~~~a~~~~~~ 146 (376)
..+..|+.+-+.-+++.
T Consensus 101 ~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 34455665544444443
No 358
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.37 E-value=1.3e+02 Score=21.54 Aligned_cols=42 Identities=7% Similarity=-0.011 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHH
Q 042039 17 VTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIH 59 (376)
Q Consensus 17 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 59 (376)
..++.++..++...-.+.++-.+.+....| ..+..+|..-.+
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR 153 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGR 153 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 334444444444444444444444444444 333444433333
No 359
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=21.36 E-value=2.7e+02 Score=21.08 Aligned_cols=176 Identities=10% Similarity=0.011 Sum_probs=0.0
Q ss_pred ccccCCChhhHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcC-CChHHHHHHHHHHHhcCCCCchH
Q 042039 9 GVVCKPNTVTYNTIIDGLCKEGFVDKAKALFLQMKGENINPDVVTYNSLIHGLCHA-NDWNEAKRLFFEMMDQGVQPSVV 87 (376)
Q Consensus 9 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~ 87 (376)
|.-..-+..-.-.+....-+.+++++..+....+.+.+...+..-.+.|-.+|-+. |....+.+++..+.+........
T Consensus 1 ~~~~~~~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~ 80 (236)
T 3iqu_A 1 GAMGSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSE 80 (236)
T ss_dssp CTTTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred CCcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCH
Q ss_pred hHHHHHHHHHhC--CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc-----------------HHHHHHHHHHHH
Q 042039 88 TFNVIMDELCKN--GKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGK-----------------INRAEELFGSME 148 (376)
Q Consensus 88 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~ 148 (376)
....++.-|... ..+.....-.-.++....-|+..+-..-+-.+--.|| .+.+.+.|+.+.
T Consensus 81 ~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~ 160 (236)
T 3iqu_A 81 EKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAM 160 (236)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q ss_pred hcC---CCCChhhHHHHHHHHHc-----cCcHHHHHHHHHHHHH
Q 042039 149 SMG---CKHDDVSYNILINGYCK-----NKEVEEALSLYREMVS 184 (376)
Q Consensus 149 ~~~---~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~ 184 (376)
+.. ++|+......|+--|.- .+++++|.++-++..+
T Consensus 161 ~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 161 DISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 360
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.88 E-value=5.1e+02 Score=25.92 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=50.7
Q ss_pred HHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 042039 278 EIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHDLFLDMEENAVAPNVIIFVTLIHGFVRINKPSKVIELLHKM 357 (376)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (376)
+.-.+.|.++.+.--..|.......+..-...+++..|++++.++.+. +|+...|..++..+...| |+....+.+++
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHhh
Confidence 344455555554422234433333344444789999999999999876 468888888887776554 66666666666
Q ss_pred HhC
Q 042039 358 KEK 360 (376)
Q Consensus 358 ~~~ 360 (376)
.-.
T Consensus 1343 ~~~ 1345 (1354)
T 3lxu_X 1343 MIT 1345 (1354)
T ss_dssp HHH
T ss_pred hhh
Confidence 533
No 361
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.77 E-value=90 Score=18.72 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhh
Q 042039 20 NTIIDGLCKEGFVDKAKALFLQMKG 44 (376)
Q Consensus 20 ~~l~~~~~~~g~~~~a~~~~~~~~~ 44 (376)
..+.+-|+..|+++.|+.+|+...+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4466778888888888888887764
No 362
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.59 E-value=1.1e+02 Score=20.20 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcccccCCCCCHHHHHHHHHHHHccCChhHHHH
Q 042039 264 YNCLIDGLCKSGRLEIALELFRSLPRRVLVADVVTYNIMIHGLCNDGQMDKAHD 317 (376)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 317 (376)
|...+......++.+-|.++++-+.+.| +...|...+..|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3344444444555555555555554432 44445555555554444444433
No 363
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=20.48 E-value=1.2e+02 Score=16.75 Aligned_cols=12 Identities=17% Similarity=-0.022 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHH
Q 042039 67 WNEAKRLFFEMM 78 (376)
Q Consensus 67 ~~~a~~~~~~~~ 78 (376)
.++|..+-+.+.
T Consensus 22 H~EA~tIA~~L~ 33 (61)
T 3ph0_C 22 HQEAASIADWLA 33 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 364
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.18 E-value=4.6e+02 Score=26.22 Aligned_cols=81 Identities=9% Similarity=0.077 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhcCCCCchHhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 042039 67 WNEAKRLFFEMMDQGVQPSVVTFNVIMDELCKNGKMDEASRLLDLMVQRDVRPNAFTYSTLMDGFCLTGKINRAEELFGS 146 (376)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 146 (376)
.++..+.|.++.+.--.-|.......+.-....+++..|++++.++.+. +|+...+..++..+...| |+....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 4455666667666521123333333333344678899999999998876 467777777777765554 4555555555
Q ss_pred HHhc
Q 042039 147 MESM 150 (376)
Q Consensus 147 ~~~~ 150 (376)
+.-.
T Consensus 1342 ~~~~ 1345 (1354)
T 3lxu_X 1342 MMIT 1345 (1354)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5433
Done!