Query 042041
Match_columns 554
No_of_seqs 155 out of 249
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 13:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 5E-184 1E-188 1450.8 38.5 451 10-475 1-454 (478)
2 PRK11677 hypothetical protein; 61.2 15 0.00033 34.7 4.9 44 19-66 2-45 (134)
3 PF06305 DUF1049: Protein of u 56.6 43 0.00093 26.9 6.2 47 20-66 18-64 (68)
4 PF07219 HemY_N: HemY protein 52.0 27 0.00059 31.0 4.8 46 16-61 13-65 (108)
5 COG1033 Predicted exporters of 49.8 33 0.00073 40.5 6.3 56 23-78 251-317 (727)
6 TIGR02976 phageshock_pspB phag 48.9 53 0.0011 28.3 5.8 28 19-46 3-30 (75)
7 PF01578 Cytochrom_C_asm: Cyto 37.1 93 0.002 30.2 6.4 29 54-82 116-144 (214)
8 PF11044 TMEMspv1-c74-12: Plec 35.3 75 0.0016 25.3 4.2 28 18-45 2-34 (49)
9 TIGR00540 hemY_coli hemY prote 29.7 77 0.0017 33.9 4.8 43 16-58 38-87 (409)
10 PF12801 Fer4_5: 4Fe-4S bindin 29.3 88 0.0019 23.6 3.8 24 19-42 2-25 (48)
11 PRK10747 putative protoheme IX 28.0 80 0.0017 33.8 4.6 38 15-52 37-81 (398)
12 COG2717 Predicted membrane pro 25.1 5.4E+02 0.012 26.4 9.4 76 53-177 103-190 (209)
13 PHA03105 EEV glycoprotein; Pro 24.9 79 0.0017 31.2 3.4 33 22-54 9-41 (188)
14 COG3105 Uncharacterized protei 23.7 1.4E+02 0.003 28.6 4.7 60 18-82 6-75 (138)
15 TIGR03777 RPE4 Rickettsial pal 23.4 34 0.00073 25.3 0.5 9 348-356 24-32 (32)
16 PF14015 DUF4231: Protein of u 22.0 2.4E+02 0.0053 24.4 5.7 42 21-68 53-94 (112)
17 PF12273 RCR: Chitin synthesis 21.3 87 0.0019 28.7 2.9 25 20-53 5-29 (130)
18 KOG3643 GABA receptor [Signal 21.3 68 0.0015 36.0 2.5 25 23-47 309-333 (459)
19 PF06295 DUF1043: Protein of u 20.6 1.9E+02 0.0041 26.8 5.0 16 51-66 26-41 (128)
20 PF13297 Telomere_Sde2_2: Telo 20.4 47 0.001 27.7 0.8 13 59-71 17-29 (60)
21 PF15050 SCIMP: SCIMP protein 20.0 1.5E+02 0.0032 28.1 4.1 33 19-53 8-40 (133)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=5.2e-184 Score=1450.84 Aligned_cols=451 Identities=57% Similarity=1.010 Sum_probs=428.3
Q ss_pred CCCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccC
Q 042041 10 AGRELDQTPTWAVSMVCGIIVALSFVLEGIFHLVAKIFHKRHKYAMLEALEKIKGELMILGFISLLLTFGQNYIAQICIP 89 (554)
Q Consensus 10 ~~rsLe~TPTWaVA~Vc~V~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeELMLLGFISLLLtv~q~~IskICIp 89 (554)
|+|+||+||||+||+||+|||++|+++||++|++||||+|++||+|++||||+|||||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccccccccccccccccccchhhhhhhcC--CCCCCCCCC-CcccccccchhhHHHHHHHHHHHHHHHHH
Q 042041 90 VEVADTMLPCRKERLKKVKHDLFDSRGRALWYEQRLLAG--EADDVGCHK-GKVPLISVHGLHQLHIFIFFLAVFHVFYS 166 (554)
Q Consensus 90 ~s~~~~mlPC~~~~~~~~~~~~~~~~~~~~~~~RrlLa~--~~~~~~C~~-GkvPlvS~egLhQLHIFIFVLAv~HV~Ys 166 (554)
++++++|+||+..++.++.... ..+||+|+. +.+.++|++ |||||+|+|||||||||||||||+||+||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~~~~--------~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV~Ys 152 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKEGSS--------HNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHVLYS 152 (478)
T ss_pred hhHHhcccCCCCcccccccccc--------hhhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999965543322111 157888873 334679976 99999999999999999999999999999
Q ss_pred HHHHHHhhHhhhhHHHHHHHHhhhhccccccccccCCCCceeeeecccccccccCCCCCCCchhhHHHHHHHhccCCchh
Q 042041 167 AITMTLGRLKIRKWKQWERETESEQHMVNGIWLDVCDSSRFRLTHETSFVRGHTNNWMKSPTIFYLICFFRQFFRSVRKA 246 (554)
Q Consensus 167 ~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~~~~~~~~p~r~~~~~qttFvr~h~~~w~~~~~l~w~~cFfrQF~~SV~k~ 246 (554)
|+||+||++|||+||+||+|+++++|+. .+||+|++++||++|+|+|+++|++++++.|++|||||||+||+|+
T Consensus 153 ~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~------~~d~~r~~~~~qt~F~r~h~~~w~~~~~~~wi~~FfrQF~~SV~k~ 226 (478)
T PF03094_consen 153 CLTMLLGRAKIRRWKKWEDEAQTDEYQF------SNDPRRFRLTRQTTFVRRHTSFWSKSPVLSWIVCFFRQFYGSVTKS 226 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc------ccCcceeeeecccHHHHhhcCCcccChhHHhHHHHHHHhhccccHH
Confidence 9999999999999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCCCCcHHHHHHHHHhhcccceeeeChhHHHHHHHHHHhccCCcccceeehhhhhHHHHHHhhhh
Q 042041 247 DYLTMRHGFINVHLAPGSKFDFQKYIKRSLEDDFKVVVGISPPLWASMLVFLLLNINDWWPVMYFMSFFPLMVVLAVGTK 326 (554)
Q Consensus 247 DYltLR~gFI~~H~~~~~~FdFhkYi~RslEdDFk~VVGIS~~lW~~vvlFlLlnv~Gw~~~yfWlsfiPliliL~VGtK 326 (554)
||+|||+|||++|++|+++|||||||+||||||||+||||||+||++||+|+|+|++|| |+|||++|||++++|+||||
T Consensus 227 DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw-~~yfW~sfipl~liL~VGtK 305 (478)
T PF03094_consen 227 DYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGW-HTYFWLSFIPLILILLVGTK 305 (478)
T ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcc-eeEeehhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccceeecCCcccccccchHHHHHHHHHHhhhhhHHHHHHHhhhhccCCcccccCccceee
Q 042041 327 LQGIISQMAMEIKERHVVIQGIPLVQVSDSYFWFNRPQLVLRLIHFVLFQNAFEITYFLWIWYEFGLTSCFHDDFTHAIV 406 (554)
Q Consensus 327 Lq~II~~La~ei~e~~~~v~G~~~vkpsD~lFWF~rP~lvL~LIHfiLFQNAFelAfF~W~~~~fG~~SC~~~~~~~ii~ 406 (554)
||+||++||+|++|++++++|+|+|||+|++|||+||+|||+||||||||||||||||+|+||+||++||||++.+++++
T Consensus 306 Lq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~~i~ 385 (478)
T PF03094_consen 306 LQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEYIII 385 (478)
T ss_pred HHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccccccccccchhhhhhhcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcccccccc
Q 042041 407 RFFLGIAVQFMCSYITLPLYALVTQMGSTMKKAIFDDQTSKALKQWHRKARKHESIRSNSSYHRSLSHS 475 (554)
Q Consensus 407 Rl~~Gv~vQ~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~~~ak~k~~~~~~~~~~~~~~~~ 475 (554)
|+++||++|++|||+|||||||||||||+||++||+|+|+++|++||++||||+++++.+.....++.+
T Consensus 386 rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~~~~~~~~~~~ 454 (478)
T PF03094_consen 386 RLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKSAHSGSTTPGS 454 (478)
T ss_pred ehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999887755444444333
No 2
>PRK11677 hypothetical protein; Provisional
Probab=61.23 E-value=15 Score=34.72 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=28.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHH
Q 042041 19 TWAVSMVCGIIVALSFVLEGIFHLVAKIFHKRHKYAMLEALEKIKGEL 66 (554)
Q Consensus 19 TWaVA~Vc~V~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeEL 66 (554)
+|..|++++|+.+ ++=.++.+++.. +.++++.|.+-||+.|.||
T Consensus 2 ~W~~a~i~livG~---iiG~~~~R~~~~-~~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVVGI---IIGAVAMRFGNR-KLRQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHHHH---HHHHHHHhhccc-hhhHHHHHHHHHHHHHHHH
Confidence 4888887765543 333344444331 1145678999999999996
No 3
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=56.59 E-value=43 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=32.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHH
Q 042041 20 WAVSMVCGIIVALSFVLEGIFHLVAKIFHKRHKYAMLEALEKIKGEL 66 (554)
Q Consensus 20 WaVA~Vc~V~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeEL 66 (554)
+-++++..+..++.+++=-.+.....+=.|++.+.+...+++++.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555666666666666666555666688888999998886
No 4
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.04 E-value=27 Score=31.02 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=36.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHH-------HHhHHhhcCchHHHHHHHH
Q 042041 16 QTPTWAVSMVCGIIVALSFVLEGIFHL-------VAKIFHKRHKYAMLEALEK 61 (554)
Q Consensus 16 ~TPTWaVA~Vc~V~V~iSl~~Er~LH~-------Lgk~Lkkk~kkaL~eALeK 61 (554)
||.-|..++++.+++++..++.+.+-. +.+|++++|++.-+++|++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888765 5678888888888888876
No 5
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=49.75 E-value=33 Score=40.52 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHhhcCc-----hHHHHHHHHHHHHHHH------HHHHHHHHHh
Q 042041 23 SMVCGIIVALSFVLEGIFHLVAKIFHKRHK-----YAMLEALEKIKGELMI------LGFISLLLTF 78 (554)
Q Consensus 23 A~Vc~V~V~iSl~~Er~LH~Lgk~Lkkk~k-----kaL~eALeKiKeELML------LGFISLLLtv 78 (554)
....++.++|.+.++.++|...++.+.+++ .|+.+|+.|...=+++ +||+||+.+-
T Consensus 251 ~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 251 TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 344566778889999999999999987776 4777777777766554 7999998763
No 6
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=48.94 E-value=53 Score=28.31 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=22.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhH
Q 042041 19 TWAVSMVCGIIVALSFVLEGIFHLVAKI 46 (554)
Q Consensus 19 TWaVA~Vc~V~V~iSl~~Er~LH~Lgk~ 46 (554)
.|.+++-..+|+++-..++-.+||..||
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777788888888999999999884
No 7
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=37.14 E-value=93 Score=30.25 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 042041 54 AMLEALEKIKGELMILGFISLLLTFGQNY 82 (554)
Q Consensus 54 aL~eALeKiKeELMLLGFISLLLtv~q~~ 82 (554)
+-.+.||++-.-++..||+.|.++..-+.
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~ 144 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGA 144 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44688899999999999999999877764
No 8
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=35.34 E-value=75 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=14.2
Q ss_pred CCchh-----hHHHHHHHHHHHHHHHHHHHHHh
Q 042041 18 PTWAV-----SMVCGIIVALSFVLEGIFHLVAK 45 (554)
Q Consensus 18 PTWaV-----A~Vc~V~V~iSl~~Er~LH~Lgk 45 (554)
|||-- ..+..+|.-+.+.+=.-+..+..
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77743 33333444455555555555544
No 9
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=29.65 E-value=77 Score=33.89 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=28.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHH-------HHHhHHhhcCchHHHHH
Q 042041 16 QTPTWAVSMVCGIIVALSFVLEGIFH-------LVAKIFHKRHKYAMLEA 58 (554)
Q Consensus 16 ~TPTWaVA~Vc~V~V~iSl~~Er~LH-------~Lgk~Lkkk~kkaL~eA 58 (554)
+|+-|..+++..+++++.+++++++. .+.+|+.++|++.-.++
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~~k~~~~ 87 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKRRKAQKQ 87 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 56667766666666666778899995 45568877655333333
No 10
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=29.27 E-value=88 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=17.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Q 042041 19 TWAVSMVCGIIVALSFVLEGIFHL 42 (554)
Q Consensus 19 TWaVA~Vc~V~V~iSl~~Er~LH~ 42 (554)
.|...+...++++++++..|.-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 2 AWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHh
Confidence 455556666888889999986554
No 11
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=28.04 E-value=80 Score=33.78 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=28.8
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHH-------HHhHHhhcCc
Q 042041 15 DQTPTWAVSMVCGIIVALSFVLEGIFHL-------VAKIFHKRHK 52 (554)
Q Consensus 15 e~TPTWaVA~Vc~V~V~iSl~~Er~LH~-------Lgk~Lkkk~k 52 (554)
=+|+-|..++++.+++++.+++++.+.+ +.+|+.++|+
T Consensus 37 ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 37 IETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 3677788888888888888888998854 4568777655
No 12
>COG2717 Predicted membrane protein [Function unknown]
Probab=25.12 E-value=5.4e+02 Score=26.36 Aligned_cols=76 Identities=28% Similarity=0.468 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccCccccccccccCccccccccccccccccccchhhhhhhcCCCCC
Q 042041 53 YAMLEALEKIKGELMILGFISLLLTFGQNYIAQICIPVEVADTMLPCRKERLKKVKHDLFDSRGRALWYEQRLLAGEADD 132 (554)
Q Consensus 53 kaL~eALeKiKeELMLLGFISLLLtv~q~~IskICIp~s~~~~mlPC~~~~~~~~~~~~~~~~~~~~~~~RrlLa~~~~~ 132 (554)
+.-.-..|-.++=.+.+|+|++++. +|--+.+ ..+..||+-+-
T Consensus 103 ~~~~~~~d~~~rpyitiG~iaflll----------~pLalTS-----------------------~k~~~rrlG~r---- 145 (209)
T COG2717 103 DLALLGLDLLKRPYITIGMIAFLLL----------IPLALTS-----------------------FKWVRRRLGKR---- 145 (209)
T ss_pred cHHHhhHHHHHhHHHHHHHHHHHHH----------HHHHHHh-----------------------hHHHHHHHHHH----
Confidence 3555667888888999999999886 2221000 01224444311
Q ss_pred CCCCCCcccccccchhhHHHHHHHHHHHHHH------------HHHHHHHHHhhHhh
Q 042041 133 VGCHKGKVPLISVHGLHQLHIFIFFLAVFHV------------FYSAITMTLGRLKI 177 (554)
Q Consensus 133 ~~C~~GkvPlvS~egLhQLHIFIFVLAv~HV------------~Ys~lTm~Lg~~Ki 177 (554)
=.-||+|=+.+-.|+..|. +|.++++.+...|.
T Consensus 146 ------------W~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~ 190 (209)
T COG2717 146 ------------WKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRV 190 (209)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH
Confidence 1346888888889999994 67778888777766
No 13
>PHA03105 EEV glycoprotein; Provisional
Probab=24.92 E-value=79 Score=31.24 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHhhcCchH
Q 042041 22 VSMVCGIIVALSFVLEGIFHLVAKIFHKRHKYA 54 (554)
Q Consensus 22 VA~Vc~V~V~iSl~~Er~LH~Lgk~Lkkk~kka 54 (554)
+.++|+.++++..++=-.-|.+.|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 356788888888888888899999999887754
No 14
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.71 E-value=1.4e+02 Score=28.64 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=34.7
Q ss_pred CCchhhHHHHH-HHHHHHHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhc
Q 042041 18 PTWAVSMVCGI-IVALSFVLEGIFHLVAKIFHKRHKYAMLEALEKIKGELM---------ILGFISLLLTFGQNY 82 (554)
Q Consensus 18 PTWaVA~Vc~V-~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeELM---------LLGFISLLLtv~q~~ 82 (554)
-+|..|.+-+| -|+|..++-| |++- +-|+++.+..-|||+|.+|= .----+||=|..|+|
T Consensus 6 ~~W~~a~igLvvGi~IG~li~R----lt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIAR----LTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47887766543 3444455444 4441 22345578999999998762 222345666666664
No 15
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=23.41 E-value=34 Score=25.29 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=7.0
Q ss_pred cceeecCCc
Q 042041 348 IPLVQVSDS 356 (554)
Q Consensus 348 ~~~vkpsD~ 356 (554)
+|+||||||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 578888885
No 16
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=22.01 E-value=2.4e+02 Score=24.38 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCchHHHHHHHHHHHHHHH
Q 042041 21 AVSMVCGIIVALSFVLEGIFHLVAKIFHKRHKYAMLEALEKIKGELMI 68 (554)
Q Consensus 21 aVA~Vc~V~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeELML 68 (554)
.+++++.++++++-.+...-..=.+|.+.+ .+.|++|.|.++
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~~~W~~~r------~tae~lk~e~~~ 94 (112)
T PF14015_consen 53 LVAAILSALAAILASLAAFFRFHERWIRYR------ATAESLKREKWL 94 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHH------HHHHHHHHHHHH
Confidence 344567777777777777777777777654 456666666553
No 17
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.34 E-value=87 Score=28.71 Aligned_cols=25 Identities=16% Similarity=0.378 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCch
Q 042041 20 WAVSMVCGIIVALSFVLEGIFHLVAKIFHKRHKY 53 (554)
Q Consensus 20 WaVA~Vc~V~V~iSl~~Er~LH~Lgk~Lkkk~kk 53 (554)
|+|.++++++++++++.=+ +||+||
T Consensus 5 ~~iii~~i~l~~~~~~~~~---------rRR~r~ 29 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHN---------RRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHhhc
No 18
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=21.29 E-value=68 Score=36.01 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHH
Q 042041 23 SMVCGIIVALSFVLEGIFHLVAKIF 47 (554)
Q Consensus 23 A~Vc~V~V~iSl~~Er~LH~Lgk~L 47 (554)
-.||++||++||+==.+.|++.+..
T Consensus 309 L~vCFvfVF~sLLEYA~V~Y~~~~~ 333 (459)
T KOG3643|consen 309 LGVCFVFVFLSLLEYAAVNYMFKRR 333 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4699999999998888889998866
No 19
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.56 E-value=1.9e+02 Score=26.79 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHH
Q 042041 51 HKYAMLEALEKIKGEL 66 (554)
Q Consensus 51 ~kkaL~eALeKiKeEL 66 (554)
+++.|.+.|++.|+||
T Consensus 26 ~q~~l~~eL~~~k~el 41 (128)
T PF06295_consen 26 KQAKLEQELEQAKQEL 41 (128)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3568999999999997
No 20
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=20.40 E-value=47 Score=27.73 Aligned_cols=13 Identities=46% Similarity=0.920 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 042041 59 LEKIKGELMILGF 71 (554)
Q Consensus 59 LeKiKeELMLLGF 71 (554)
||++|+|||-+|.
T Consensus 17 ldrLK~~L~a~GL 29 (60)
T PF13297_consen 17 LDRLKSALMALGL 29 (60)
T ss_pred HHHHHHHHHHcCC
Confidence 6899999999984
No 21
>PF15050 SCIMP: SCIMP protein
Probab=20.04 E-value=1.5e+02 Score=28.14 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=24.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCch
Q 042041 19 TWAVSMVCGIIVALSFVLEGIFHLVAKIFHKRHKY 53 (554)
Q Consensus 19 TWaVA~Vc~V~V~iSl~~Er~LH~Lgk~Lkkk~kk 53 (554)
.|++.+|. ||++|+.+--+|.-+-.|+-|+.||
T Consensus 8 FWiiLAVa--II~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 8 FWIILAVA--IILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 47777776 6666777777888888888777663
Done!