Query 042041
Match_columns 554
No_of_seqs 155 out of 249
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 23:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042041.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042041hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 22.5 18 0.0013 25.9 1.7 18 364-381 29-46 (51)
2 d1ug0a_ a.217.1.1 (A:) Splicin 15.9 36 0.0026 26.5 2.4 54 325-391 25-80 (88)
3 d1xrda1 f.3.1.1 (A:1-52) Light 9.6 66 0.0048 23.2 1.9 13 149-161 15-27 (52)
4 d1x4oa1 a.217.1.1 (A:8-72) Spl 9.2 53 0.0039 24.0 1.3 36 325-360 8-44 (65)
5 d3b60a2 f.37.1.1 (A:10-328) Mu 8.9 2.3E+02 0.017 23.5 5.7 25 20-44 156-180 (319)
6 d1iwga8 f.35.1.1 (A:513-566,A: 8.2 2E+02 0.015 24.7 5.2 57 21-77 110-178 (222)
7 d1zkea1 a.30.6.1 (A:1-79) Hypo 8.1 57 0.0042 25.2 1.1 15 53-67 63-77 (79)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 7.3 1.2E+02 0.0086 20.3 2.2 13 153-165 22-34 (37)
9 d2pila_ d.24.1.1 (A:) Pilin Gc 6.8 3.1E+02 0.023 20.5 5.3 36 27-62 8-43 (158)
10 d1q1ha_ a.4.5.41 (A:) Transcri 6.2 70 0.0051 25.3 0.7 8 304-312 74-81 (88)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.49 E-value=18 Score=25.94 Aligned_cols=18 Identities=50% Similarity=0.719 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhhhhhHH
Q 042041 364 QLVLRLIHFVLFQNAFEI 381 (554)
Q Consensus 364 ~lvL~LIHfiLFQNAFel 381 (554)
.++|-|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 789999999999999986
No 2
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.86 E-value=36 Score=26.54 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhhhccccccccee-ecCCcccccccchHHHHHHHHHHh-hhhhHHHHHHHhhhhc
Q 042041 325 TKLQGIISQMAMEIKERHVVIQGIPLV-QVSDSYFWFNRPQLVLRLIHFVLF-QNAFEITYFLWIWYEF 391 (554)
Q Consensus 325 tKLq~II~~La~ei~e~~~~v~G~~~v-kpsD~lFWF~rP~lvL~LIHfiLF-QNAFelAfF~W~~~~f 391 (554)
.++..||.++|.=|++.....+-...- +.+|..||| |+ .+.=.=.|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~F-------------L~d~~~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTF-------------LHDKNSREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHH-------------HHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCcee-------------eCCCCCCCcHHHHHHHHHH
Confidence 368999999999888765555433222 356888999 33 3343446777777765
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.58 E-value=66 Score=23.25 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHH
Q 042041 149 HQLHIFIFFLAVF 161 (554)
Q Consensus 149 hQLHIFIFVLAv~ 161 (554)
--+|.|+|+||++
T Consensus 15 va~~~fL~~LAl~ 27 (52)
T d1xrda1 15 VGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3468999999964
No 4
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.22 E-value=53 Score=23.99 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHhhhccccccccee-ecCCccccc
Q 042041 325 TKLQGIISQMAMEIKERHVVIQGIPLV-QVSDSYFWF 360 (554)
Q Consensus 325 tKLq~II~~La~ei~e~~~~v~G~~~v-kpsD~lFWF 360 (554)
.++..||.++|.-|++.+...+-...- +.+|--|||
T Consensus 8 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~F 44 (65)
T d1x4oa1 8 EEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSF 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTT
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcee
Confidence 368899999999988765544432111 345668998
No 5
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.88 E-value=2.3e+02 Score=23.48 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 042041 20 WAVSMVCGIIVALSFVLEGIFHLVA 44 (554)
Q Consensus 20 WaVA~Vc~V~V~iSl~~Er~LH~Lg 44 (554)
|.++.++.+++.+.+++-....+-.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~ 180 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRF 180 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhHH
Confidence 6667777777776666655444433
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.23 E-value=2e+02 Score=24.74 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHh--hcCchHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 042041 21 AVSMVCGIIVALSFVLEGIFHLVAKIFH--KRHKYAMLEALEKIKGEL----------MILGFISLLLT 77 (554)
Q Consensus 21 aVA~Vc~V~V~iSl~~Er~LH~Lgk~Lk--kk~kkaL~eALeKiKeEL----------MLLGFISLLLt 77 (554)
.+.+....++++.+.+..++|.+..+.+ +++.+...+|..+.-+|- +++||++|.+.
T Consensus 110 ~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 110 DVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 4455667778889999999999998865 333355555555444443 37888888875
No 7
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=8.12 E-value=57 Score=25.20 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHH
Q 042041 53 YAMLEALEKIKGELM 67 (554)
Q Consensus 53 kaL~eALeKiKeELM 67 (554)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 678999999999963
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.30 E-value=1.2e+02 Score=20.28 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 042041 153 IFIFFLAVFHVFY 165 (554)
Q Consensus 153 IFIFVLAv~HV~Y 165 (554)
.+||||||..-.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999876655
No 9
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.84 E-value=3.1e+02 Score=20.48 Aligned_cols=36 Identities=6% Similarity=-0.053 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhcCchHHHHHHHHH
Q 042041 27 GIIVALSFVLEGIFHLVAKIFHKRHKYAMLEALEKI 62 (554)
Q Consensus 27 ~V~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKi 62 (554)
.|+++|+++.==++=.+..+.++.+.+.....+.-+
T Consensus 8 VViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i 43 (158)
T d2pila_ 8 IVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666666555544444433
No 10
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.21 E-value=70 Score=25.25 Aligned_cols=8 Identities=25% Similarity=0.974 Sum_probs=5.6
Q ss_pred Ccccceeeh
Q 042041 304 DWWPVMYFM 312 (554)
Q Consensus 304 Gw~~~yfWl 312 (554)
|| ++|+|-
T Consensus 74 gw-~~Y~W~ 81 (88)
T d1q1ha_ 74 GW-FIYYWK 81 (88)
T ss_dssp CC-CEEEEE
T ss_pred Cc-EEEEEE
Confidence 77 777773
Done!