Query 042043
Match_columns 121
No_of_seqs 65 out of 67
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 13:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07407 Seadorna_VP6: Seadorn 94.3 0.034 7.4E-07 48.9 2.8 25 2-26 35-59 (420)
2 PRK13922 rod shape-determining 92.3 0.22 4.9E-06 39.6 4.2 35 3-37 73-110 (276)
3 PF02183 HALZ: Homeobox associ 90.5 0.35 7.6E-06 30.5 3.0 25 3-27 16-40 (45)
4 PRK14872 rod shape-determining 89.7 0.5 1.1E-05 40.6 4.2 26 3-28 61-86 (337)
5 smart00338 BRLZ basic region l 89.2 0.35 7.6E-06 31.1 2.3 30 4-33 31-60 (65)
6 PF06156 DUF972: Protein of un 89.1 0.26 5.7E-06 35.9 1.8 26 2-27 32-57 (107)
7 PF08961 DUF1875: Domain of un 88.9 0.12 2.7E-06 43.0 0.0 23 3-25 140-162 (243)
8 PF07334 IFP_35_N: Interferon- 88.1 0.56 1.2E-05 33.0 2.9 26 2-27 3-28 (76)
9 PRK13169 DNA replication intia 87.9 0.34 7.3E-06 35.7 1.8 24 2-25 32-55 (110)
10 PF02344 Myc-LZ: Myc leucine z 87.8 0.78 1.7E-05 27.8 3.0 26 4-29 6-31 (32)
11 TIGR00219 mreC rod shape-deter 87.7 0.9 1.9E-05 37.4 4.3 23 3-25 70-92 (283)
12 KOG4196 bZIP transcription fac 86.8 0.97 2.1E-05 34.9 3.7 35 3-37 85-119 (135)
13 PF14645 Chibby: Chibby family 86.7 1.8 3.8E-05 31.9 5.0 38 3-40 68-105 (116)
14 KOG3119 Basic region leucine z 85.8 0.68 1.5E-05 38.0 2.7 28 2-29 225-252 (269)
15 PF00170 bZIP_1: bZIP transcri 84.6 0.82 1.8E-05 29.4 2.1 32 3-34 30-61 (64)
16 PF06005 DUF904: Protein of un 83.4 3.1 6.8E-05 28.4 4.7 29 5-33 38-66 (72)
17 PF00170 bZIP_1: bZIP transcri 83.0 2.9 6.2E-05 26.8 4.2 27 2-28 36-62 (64)
18 PF12709 Kinetocho_Slk19: Cent 82.9 1.7 3.7E-05 31.2 3.3 34 3-36 53-86 (87)
19 smart00338 BRLZ basic region l 82.8 3 6.6E-05 26.7 4.2 29 2-30 36-64 (65)
20 smart00340 HALZ homeobox assoc 79.8 2.3 4.9E-05 27.4 2.7 20 9-28 15-34 (44)
21 PF10883 DUF2681: Protein of u 79.7 3.2 7E-05 29.7 3.8 28 4-31 28-55 (87)
22 PRK00888 ftsB cell division pr 79.7 1.4 2.9E-05 31.7 1.9 26 2-27 37-62 (105)
23 smart00224 GGL G protein gamma 78.7 2.1 4.5E-05 28.2 2.4 34 9-42 2-39 (63)
24 cd00068 GGL G protein gamma su 78.2 3 6.6E-05 26.9 3.0 34 9-42 2-39 (57)
25 TIGR02894 DNA_bind_RsfA transc 78.1 4.1 8.9E-05 32.2 4.3 36 4-39 116-151 (161)
26 KOG4343 bZIP transcription fac 77.4 1.8 3.8E-05 40.4 2.4 23 3-25 313-335 (655)
27 PF02252 PA28_beta: Proteasome 75.6 3.9 8.5E-05 31.3 3.5 50 4-69 4-53 (150)
28 KOG0977 Nuclear envelope prote 75.5 4.9 0.00011 36.9 4.6 27 3-29 166-192 (546)
29 PRK14127 cell division protein 74.6 3.7 8E-05 30.3 3.0 25 4-28 42-66 (109)
30 PRK09413 IS2 repressor TnpA; R 74.3 3.9 8.5E-05 29.2 3.0 25 4-28 76-100 (121)
31 smart00340 HALZ homeobox assoc 72.4 3.3 7.1E-05 26.7 2.0 17 3-19 16-32 (44)
32 PF07716 bZIP_2: Basic region 70.5 6.2 0.00013 24.7 3.0 25 3-27 29-53 (54)
33 PF04977 DivIC: Septum formati 68.7 3.3 7.2E-05 26.5 1.5 30 3-32 28-57 (80)
34 cd07429 Cby_like Chibby, a nuc 65.9 16 0.00035 27.1 4.8 34 5-38 71-104 (108)
35 PHA00728 hypothetical protein 65.5 7.6 0.00017 30.3 3.1 27 5-31 4-30 (151)
36 PF05377 FlaC_arch: Flagella a 63.8 15 0.00031 24.5 3.8 33 2-34 10-42 (55)
37 PF14775 NYD-SP28_assoc: Sperm 63.8 6.4 0.00014 26.0 2.1 21 3-23 37-57 (60)
38 TIGR03752 conj_TIGR03752 integ 62.0 11 0.00023 34.3 3.8 18 3-20 77-94 (472)
39 PF14197 Cep57_CLD_2: Centroso 60.7 10 0.00022 25.7 2.7 20 6-25 47-66 (69)
40 PF14916 CCDC92: Coiled-coil d 58.4 2.7 5.9E-05 28.3 -0.4 21 3-23 25-45 (60)
41 PRK13923 putative spore coat p 57.1 25 0.00055 27.9 4.8 40 3-42 115-154 (170)
42 PF15058 Speriolin_N: Sperioli 56.9 10 0.00022 31.0 2.6 8 5-12 18-25 (200)
43 PF15272 BBP1_C: Spindle pole 56.4 17 0.00036 29.5 3.7 26 17-42 52-77 (196)
44 KOG3316 Transport protein part 56.2 19 0.00041 28.7 3.9 29 8-36 53-81 (163)
45 KOG4470 Proteasome activator s 54.6 29 0.00063 29.2 5.0 47 8-70 104-150 (246)
46 PF11544 Spc42p: Spindle pole 54.5 43 0.00093 23.7 5.1 39 3-41 2-40 (76)
47 PF06632 XRCC4: DNA double-str 53.5 22 0.00047 30.7 4.2 31 3-33 141-171 (342)
48 PF11382 DUF3186: Protein of u 52.9 30 0.00066 28.8 4.9 38 4-41 37-74 (308)
49 PF06005 DUF904: Protein of un 52.7 43 0.00093 22.8 4.8 28 4-31 23-57 (72)
50 PF07412 Geminin: Geminin; In 52.1 19 0.00042 29.3 3.5 32 4-35 123-154 (200)
51 PF04999 FtsL: Cell division p 52.0 18 0.00038 24.6 2.8 26 3-28 46-71 (97)
52 PF11382 DUF3186: Protein of u 50.6 24 0.00053 29.3 4.0 35 2-36 42-76 (308)
53 TIGR02449 conserved hypothetic 50.6 50 0.0011 22.4 4.8 30 4-33 12-41 (65)
54 PF07989 Microtub_assoc: Micro 49.8 31 0.00067 23.6 3.7 29 3-31 40-68 (75)
55 COG2433 Uncharacterized conser 49.6 16 0.00035 34.5 3.0 24 4-27 441-464 (652)
56 KOG4005 Transcription factor X 49.1 27 0.00058 30.0 4.0 18 2-19 100-117 (292)
57 PRK10884 SH3 domain-containing 48.1 30 0.00065 27.6 4.0 29 7-35 133-161 (206)
58 PRK13922 rod shape-determining 47.7 46 0.00099 26.5 4.9 31 7-37 70-100 (276)
59 KOG3119 Basic region leucine z 46.3 43 0.00094 27.5 4.7 38 8-45 224-261 (269)
60 PF10506 MCC-bdg_PDZ: PDZ doma 45.9 68 0.0015 21.8 4.9 38 4-41 3-40 (67)
61 TIGR00219 mreC rod shape-deter 44.7 50 0.0011 27.2 4.9 25 7-31 67-91 (283)
62 PF01166 TSC22: TSC-22/dip/bun 44.7 14 0.0003 25.1 1.4 17 3-19 25-41 (59)
63 PRK10884 SH3 domain-containing 43.8 35 0.00076 27.3 3.7 30 3-32 136-165 (206)
64 PF10224 DUF2205: Predicted co 43.3 17 0.00037 25.5 1.7 15 5-19 43-57 (80)
65 PF00631 G-gamma: GGL domain; 42.2 42 0.00091 21.9 3.3 31 7-37 3-37 (68)
66 TIGR02894 DNA_bind_RsfA transc 41.9 67 0.0015 25.4 5.0 29 4-32 102-130 (161)
67 TIGR03752 conj_TIGR03752 integ 40.8 39 0.00085 30.8 3.9 11 3-13 84-94 (472)
68 PF08172 CASP_C: CASP C termin 40.7 50 0.0011 27.1 4.3 39 2-41 96-138 (248)
69 PF06305 DUF1049: Protein of u 39.0 44 0.00095 21.0 3.0 20 10-29 45-64 (68)
70 PF12017 Tnp_P_element: Transp 38.5 75 0.0016 26.0 4.9 38 4-41 16-56 (236)
71 PF14662 CCDC155: Coiled-coil 38.3 77 0.0017 25.8 4.9 38 4-41 20-64 (193)
72 PRK10803 tol-pal system protei 37.9 48 0.001 26.9 3.7 36 3-38 65-100 (263)
73 PF10211 Ax_dynein_light: Axon 35.6 58 0.0013 25.4 3.7 32 3-34 124-155 (189)
74 PF13870 DUF4201: Domain of un 35.5 1E+02 0.0023 23.1 5.0 35 7-41 50-84 (177)
75 PF12808 Mto2_bdg: Micro-tubul 33.1 66 0.0014 21.1 3.1 23 5-27 28-50 (52)
76 PF12711 Kinesin-relat_1: Kine 33.0 68 0.0015 22.9 3.4 17 14-30 52-68 (86)
77 KOG4196 bZIP transcription fac 30.8 1.2E+02 0.0026 23.6 4.7 33 10-42 78-114 (135)
78 PF07106 TBPIP: Tat binding pr 30.5 52 0.0011 24.5 2.6 33 9-41 75-107 (169)
79 COG4467 Regulator of replicati 30.3 33 0.00072 25.9 1.6 22 3-24 33-54 (114)
80 TIGR02209 ftsL_broad cell divi 30.2 50 0.0011 21.6 2.2 25 3-27 35-59 (85)
81 PRK14872 rod shape-determining 30.0 52 0.0011 28.5 2.9 21 9-29 60-80 (337)
82 PF07558 Shugoshin_N: Shugoshi 29.7 56 0.0012 20.4 2.3 19 3-21 25-43 (46)
83 COG2919 Septum formation initi 29.7 54 0.0012 23.7 2.5 35 3-41 61-95 (117)
84 KOG4797 Transcriptional regula 29.6 37 0.0008 25.9 1.7 33 3-41 78-110 (123)
85 KOG0483 Transcription factor H 28.9 36 0.00077 27.4 1.6 29 3-31 123-151 (198)
86 COG1792 MreC Cell shape-determ 28.0 1.3E+02 0.0028 24.9 4.8 14 4-17 71-84 (284)
87 PF04340 DUF484: Protein of un 27.9 1.5E+02 0.0033 22.9 5.0 24 7-30 48-71 (225)
88 PF07200 Mod_r: Modifier of ru 27.7 1.2E+02 0.0026 21.9 4.1 30 4-33 39-68 (150)
89 PF11577 NEMO: NF-kappa-B esse 27.7 1.5E+02 0.0032 20.2 4.2 31 4-37 11-41 (68)
90 PRK14127 cell division protein 27.2 1.4E+02 0.003 22.0 4.4 38 4-41 35-72 (109)
91 PRK15422 septal ring assembly 26.9 1.6E+02 0.0035 21.0 4.4 14 11-24 51-64 (79)
92 COG1792 MreC Cell shape-determ 26.8 1.2E+02 0.0025 25.2 4.3 36 6-41 66-101 (284)
93 PF11365 DUF3166: Protein of u 26.5 72 0.0016 23.2 2.7 19 10-28 26-44 (96)
94 PF13747 DUF4164: Domain of un 26.1 1.1E+02 0.0025 21.3 3.6 30 3-32 36-65 (89)
95 COG2433 Uncharacterized conser 25.2 1.1E+02 0.0025 29.0 4.3 27 8-34 431-457 (652)
96 PF15294 Leu_zip: Leucine zipp 24.9 1.3E+02 0.0027 25.7 4.2 31 4-34 130-160 (278)
97 PF08251 Mastoparan_2: Mastopa 24.2 14 0.0003 18.7 -0.9 7 114-120 2-8 (14)
98 PF07888 CALCOCO1: Calcium bin 24.0 1.1E+02 0.0024 28.4 4.0 29 4-32 162-190 (546)
99 PF11559 ADIP: Afadin- and alp 23.7 1.3E+02 0.0028 21.9 3.7 20 7-26 60-79 (151)
100 PHA02109 hypothetical protein 23.6 1.4E+02 0.0031 24.7 4.2 37 5-41 192-228 (233)
101 COG3074 Uncharacterized protei 23.4 1.4E+02 0.0031 21.3 3.6 28 5-32 24-51 (79)
102 COG3645 Uncharacterized phage- 23.3 56 0.0012 25.3 1.7 31 7-41 13-43 (135)
103 PF08651 DASH_Duo1: DASH compl 22.6 2.5E+02 0.0053 19.3 4.7 41 2-42 1-51 (78)
104 PF03776 MinE: Septum formatio 22.4 1.1E+02 0.0024 20.4 2.8 21 25-45 27-47 (70)
105 PF06047 SynMuv_product: Ras-i 22.3 81 0.0018 23.5 2.3 20 9-28 61-80 (104)
106 KOG4119 G protein gamma subuni 21.8 2.4E+02 0.0052 19.6 4.5 36 6-41 7-46 (71)
107 TIGR03689 pup_AAA proteasome A 21.5 2.5E+02 0.0054 25.5 5.7 39 3-41 5-43 (512)
108 PF06156 DUF972: Protein of un 21.3 1.1E+02 0.0024 22.2 2.9 32 3-34 26-57 (107)
109 KOG3650 Predicted coiled-coil 21.2 38 0.00082 25.6 0.4 16 4-19 82-97 (120)
110 PF09738 DUF2051: Double stran 20.8 1.4E+02 0.003 25.4 3.7 30 4-33 124-153 (302)
No 1
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=94.33 E-value=0.034 Score=48.86 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=22.6
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLK 26 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mK 26 (121)
.+|.+||++|||||..|..||++++
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999873
No 2
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.26 E-value=0.22 Score=39.59 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=26.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH---HHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL---CNNILALMT 37 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl---Cn~il~l~s 37 (121)
+|.+||++||+||..|..++.+++.+ -+.+..++.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999966444 344444443
No 3
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.53 E-value=0.35 Score=30.48 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=22.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKk 27 (121)
.|..+|++|.+||..|..|+..++.
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999988765
No 4
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=89.70 E-value=0.5 Score=40.63 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=22.4
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
.|.+||++||++|..|..+|.++..+
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~~~e~l 86 (337)
T PRK14872 61 VLETENFLLKERIALLEERLKSYEEA 86 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998886643
No 5
>smart00338 BRLZ basic region leucin zipper.
Probab=89.16 E-value=0.35 Score=31.14 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=15.3
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNIL 33 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il 33 (121)
|..+...|..+|..|..++++++..+..+-
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555444443
No 6
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=89.07 E-value=0.26 Score=35.86 Aligned_cols=26 Identities=46% Similarity=0.662 Sum_probs=22.0
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKk 27 (121)
.+|.+||.+||.||..|..-|.++..
T Consensus 32 ~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 32 QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999888887765
No 7
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=88.86 E-value=0.12 Score=42.96 Aligned_cols=23 Identities=57% Similarity=0.741 Sum_probs=0.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~m 25 (121)
-|..||+|||+||.+|..|=+++
T Consensus 140 ~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 140 FLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999988
No 8
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=88.09 E-value=0.56 Score=32.95 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=23.2
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKk 27 (121)
-+|.+||.||+++...|-.||.++++
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999887
No 9
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.94 E-value=0.34 Score=35.74 Aligned_cols=24 Identities=50% Similarity=0.677 Sum_probs=21.7
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~m 25 (121)
.+|.+||.+|+-||..|..-|.++
T Consensus 32 ~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 32 AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999876
No 10
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=87.80 E-value=0.78 Score=27.81 Aligned_cols=26 Identities=42% Similarity=0.796 Sum_probs=20.9
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
|..|-+.|||.+.+|..-|.|++.-|
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999877
No 11
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=87.75 E-value=0.9 Score=37.38 Aligned_cols=23 Identities=43% Similarity=0.400 Sum_probs=18.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~m 25 (121)
+|.+||++||++|..|..++..+
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~ 92 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEIL 92 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999998887766653
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=86.79 E-value=0.97 Score=34.94 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=31.1
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
.|..+-++|+.||+++..||...|..|.-+..|.-
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46678899999999999999999999999988864
No 13
>PF14645 Chibby: Chibby family
Probab=86.73 E-value=1.8 Score=31.91 Aligned_cols=38 Identities=37% Similarity=0.368 Sum_probs=34.3
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYA 40 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~ 40 (121)
....++.+||++|.+|..|-..+|-.|+=++++++...
T Consensus 68 ~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtett 105 (116)
T PF14645_consen 68 ADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETT 105 (116)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999998654
No 14
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=85.84 E-value=0.68 Score=37.96 Aligned_cols=28 Identities=46% Similarity=0.582 Sum_probs=20.1
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
..|..||+.||.+..+|..||..+|.+.
T Consensus 225 ~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888777777777766543
No 15
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=84.56 E-value=0.82 Score=29.40 Aligned_cols=32 Identities=38% Similarity=0.450 Sum_probs=22.4
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
+|.+....|..+|..|..++..++..|..|..
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777777777766643
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.40 E-value=3.1 Score=28.42 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=13.6
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKGLCNNIL 33 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKklCn~il 33 (121)
.++|+.|+.+|.+|..|-...+..-+.|+
T Consensus 38 ~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 38 KEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444434333
No 17
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=82.97 E-value=2.9 Score=26.84 Aligned_cols=27 Identities=48% Similarity=0.585 Sum_probs=22.5
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
..|..+|..|+.++..|..|+..++..
T Consensus 36 ~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 36 EELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999888753
No 18
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=82.93 E-value=1.7 Score=31.24 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=30.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALM 36 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~ 36 (121)
+|.-+|..|.+||..|..+|..++.--++++.++
T Consensus 53 ~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 53 ELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778999999999999999999999888888775
No 19
>smart00338 BRLZ basic region leucin zipper.
Probab=82.85 E-value=3 Score=26.73 Aligned_cols=29 Identities=41% Similarity=0.540 Sum_probs=26.0
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLCN 30 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklCn 30 (121)
..|..+|..|+.+...|..|+..++.++.
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35889999999999999999999998764
No 20
>smart00340 HALZ homeobox associated leucin zipper.
Probab=79.80 E-value=2.3 Score=27.42 Aligned_cols=20 Identities=40% Similarity=0.684 Sum_probs=13.6
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 042043 9 EKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 9 erLRkeN~~L~~ELa~mKkl 28 (121)
+.|..||.+|.+||+++|.+
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777754
No 21
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=79.69 E-value=3.2 Score=29.65 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=24.5
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNN 31 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~ 31 (121)
+..+|++|-+||.+|..|-+.+...-+|
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999887655
No 22
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.67 E-value=1.4 Score=31.73 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.1
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKk 27 (121)
+++..+|++|+.+|..|..|+..++.
T Consensus 37 ~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 37 AAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35678999999999999999999986
No 23
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=78.69 E-value=2.1 Score=28.22 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=26.0
Q ss_pred HHHHHhhHHHHHHHHH----HHHHHHHHHHHHHhhcCC
Q 042043 9 EKLRKENAQLNNELSQ----LKGLCNNILALMTNYASG 42 (121)
Q Consensus 9 erLRkeN~~L~~ELa~----mKklCn~il~l~s~y~~~ 42 (121)
+.+|++|.+|..||.. +-+-|.+|+.|+..|...
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~~~~~ 39 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAEE 39 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHcCCCC
Confidence 4678888888888875 445699999999987664
No 24
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=78.24 E-value=3 Score=26.93 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHHHH----HHHHHHHHHHHHhhcCC
Q 042043 9 EKLRKENAQLNNELSQL----KGLCNNILALMTNYASG 42 (121)
Q Consensus 9 erLRkeN~~L~~ELa~m----KklCn~il~l~s~y~~~ 42 (121)
+.+|++|.+|..||..= -+-|.+|+.|+..|...
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~~ 39 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAEN 39 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCC
Confidence 46788888888888653 35699999999998753
No 25
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.11 E-value=4.1 Score=32.20 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=24.2
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNY 39 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y 39 (121)
|...|+.|.++|..|..++..++.=|..++..|.+-
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666677777777777653
No 26
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=77.40 E-value=1.8 Score=40.36 Aligned_cols=23 Identities=57% Similarity=0.835 Sum_probs=20.3
Q ss_pred cchhhhHHHHHhhHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~m 25 (121)
+|..||+.||+||+.|.+-|+.+
T Consensus 313 ~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 313 ALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999988754
No 27
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=75.63 E-value=3.9 Score=31.34 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=34.8
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCCceeeeeee
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSI 69 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~~q~d~~~~~~g~~~dee~~~pKLFGV~I 69 (121)
+.--|+++-.-...+..|+.++...|+-|..+++=... .+++|+- |||+|
T Consensus 4 ~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IP-kiEDGNN---------------FGV~V 53 (150)
T PF02252_consen 4 FVPSNEKIVELLQKVKPEIRELIEKCNTVKMWIQLLIP-KIEDGNN---------------FGVSV 53 (150)
T ss_dssp -B---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SS-----------------HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccccCCc---------------ccHHH
Confidence 34568889899999999999999999999999986665 3444431 99999
No 28
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.53 E-value=4.9 Score=36.92 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=24.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
.|.+|..+||++|.+|-.+|+.||++-
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 478999999999999999999999843
No 29
>PRK14127 cell division protein GpsB; Provisional
Probab=74.59 E-value=3.7 Score=30.27 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=17.3
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
|..||.+|+.+|..|..+|+.++..
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777777777777777776664
No 30
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=74.27 E-value=3.9 Score=29.17 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=18.6
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
+.+||.+|++++..|.-|.+=+|+.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888887766654
No 31
>smart00340 HALZ homeobox associated leucin zipper.
Probab=72.38 E-value=3.3 Score=26.69 Aligned_cols=17 Identities=41% Similarity=0.560 Sum_probs=14.1
Q ss_pred cchhhhHHHHHhhHHHH
Q 042043 3 ELLGENEKLRKENAQLN 19 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~ 19 (121)
.|.+||.||+||=+.|.
T Consensus 16 ~LteeNrRL~ke~~eLr 32 (44)
T smart00340 16 SLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999977664
No 32
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.50 E-value=6.2 Score=24.71 Aligned_cols=25 Identities=44% Similarity=0.577 Sum_probs=18.9
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKk 27 (121)
+|..+...|..+|..|..+++.+++
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777888888888888887764
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.73 E-value=3.3 Score=26.47 Aligned_cols=30 Identities=43% Similarity=0.541 Sum_probs=21.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNI 32 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~i 32 (121)
+|..+++.|+.+|..|..|+..+++==+-|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 566778888888888888888885533333
No 34
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=65.95 E-value=16 Score=27.06 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=31.0
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042043 5 LGENEKLRKENAQLNNELSQLKGLCNNILALMTN 38 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~ 38 (121)
..|..||||.|.+|..|=.-+|=.++=++++++.
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998875
No 35
>PHA00728 hypothetical protein
Probab=65.49 E-value=7.6 Score=30.29 Aligned_cols=27 Identities=48% Similarity=0.721 Sum_probs=21.8
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKGLCNN 31 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKklCn~ 31 (121)
..|-|+|||||..|.+-|+.+..+.||
T Consensus 4 ~teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 457899999999999888877666554
No 36
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=63.85 E-value=15 Score=24.49 Aligned_cols=33 Identities=15% Similarity=0.435 Sum_probs=24.5
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
+.|+..-.-+|++|..|+.++..++.--.+|+.
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778999999999999988865554443
No 37
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=63.77 E-value=6.4 Score=25.97 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=14.2
Q ss_pred cchhhhHHHHHhhHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELS 23 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa 23 (121)
.|..|++.|+++|..|.+=|.
T Consensus 37 ~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777665443
No 38
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.00 E-value=11 Score=34.27 Aligned_cols=18 Identities=44% Similarity=0.735 Sum_probs=13.2
Q ss_pred cchhhhHHHHHhhHHHHH
Q 042043 3 ELLGENEKLRKENAQLNN 20 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ 20 (121)
.|..+|++|++||.+|..
T Consensus 77 ~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 77 KLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467778888888877744
No 39
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.68 E-value=10 Score=25.65 Aligned_cols=20 Identities=50% Similarity=0.740 Sum_probs=10.9
Q ss_pred hhhHHHHHhhHHHHHHHHHH
Q 042043 6 GENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 6 eENerLRkeN~~L~~ELa~m 25 (121)
.+|.+|+.||..|..||...
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555443
No 40
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=58.38 E-value=2.7 Score=28.32 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=13.9
Q ss_pred cchhhhHHHHHhhHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELS 23 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa 23 (121)
.|-.|.++|+++|.-|+-+|+
T Consensus 25 ~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 25 GLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred HHHHHHHHHHHhccccceeee
Confidence 355677777777777666654
No 41
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=57.12 E-value=25 Score=27.86 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=32.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYASG 42 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~~ 42 (121)
.|..+|+.|..+|..|..+++-+..-|..++..|.+-...
T Consensus 115 kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~ 154 (170)
T PRK13923 115 KLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRM 154 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567888888888888888888999999999999765543
No 42
>PF15058 Speriolin_N: Speriolin N terminus
Probab=56.93 E-value=10 Score=31.03 Aligned_cols=8 Identities=50% Similarity=0.821 Sum_probs=3.6
Q ss_pred hhhhHHHH
Q 042043 5 LGENEKLR 12 (121)
Q Consensus 5 ~eENerLR 12 (121)
..||++||
T Consensus 18 v~ENeeLK 25 (200)
T PF15058_consen 18 VRENEELK 25 (200)
T ss_pred HhhhHHHH
Confidence 34444444
No 43
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=56.42 E-value=17 Score=29.48 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042043 17 QLNNELSQLKGLCNNILALMTNYASG 42 (121)
Q Consensus 17 ~L~~ELa~mKklCn~il~l~s~y~~~ 42 (121)
.|-.||.++|+++++-+.|.++|...
T Consensus 52 ElI~ELkqsKklydnYYkL~~KY~~L 77 (196)
T PF15272_consen 52 ELINELKQSKKLYDNYYKLYSKYQEL 77 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999874
No 44
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.22 E-value=19 Score=28.73 Aligned_cols=29 Identities=24% Similarity=0.617 Sum_probs=26.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042043 8 NEKLRKENAQLNNELSQLKGLCNNILALM 36 (121)
Q Consensus 8 NerLRkeN~~L~~ELa~mKklCn~il~l~ 36 (121)
-|||-+|+.+..-||.-||=+|.++...|
T Consensus 53 ~Erl~~e~~rf~deLeimKFiCkDfW~~V 81 (163)
T KOG3316|consen 53 SERLTRERNRFKDELEIMKFICKDFWSIV 81 (163)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999987655
No 45
>KOG4470 consensus Proteasome activator subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.65 E-value=29 Score=29.23 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=34.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCCceeeeeeec
Q 042043 8 NEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIG 70 (121)
Q Consensus 8 NerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~~q~d~~~~~~g~~~dee~~~pKLFGV~Ig 70 (121)
|++|=-=+..+.-|+-.+..+||.+.-+++-.-. .+++|+- |||+|-
T Consensus 104 Nekl~~l~~lvkP~i~~lvEk~nlv~tWIq~lIP-kIEDGNn---------------FGVaIQ 150 (246)
T KOG4470|consen 104 NEKLAYLIQLVKPEIRKLVEKCNLVKTWIQLLIP-KIEDGNN---------------FGVAIQ 150 (246)
T ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcc-ccccCCc---------------cceeeh
Confidence 6666666777778888888999998888875443 4555441 999994
No 46
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=54.55 E-value=43 Score=23.65 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=32.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
+|.++|+.|++.=..-..|+.+++.+...+..=|.+|..
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~ 40 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTE 40 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999976
No 47
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=53.46 E-value=22 Score=30.68 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=24.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNIL 33 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il 33 (121)
.|..+|.+|.++|.+|.+|..++..+.+.++
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v 171 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEKFV 171 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888877776665
No 48
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=52.95 E-value=30 Score=28.76 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=30.0
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
|.++...||++|..|..|+.++++.-+.--.|+.....
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~ 74 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAP 74 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888888888887777776554
No 49
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.69 E-value=43 Score=22.82 Aligned_cols=28 Identities=43% Similarity=0.472 Sum_probs=15.2
Q ss_pred chhhhHHHHHh-------hHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKE-------NAQLNNELSQLKGLCNN 31 (121)
Q Consensus 4 L~eENerLRke-------N~~L~~ELa~mKklCn~ 31 (121)
|.-||++|+.+ |..|..|..+++.-.+.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 66666666666544433
No 50
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=52.05 E-value=19 Score=29.27 Aligned_cols=32 Identities=41% Similarity=0.478 Sum_probs=24.1
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILAL 35 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l 35 (121)
-.+||++|.++-..|..|++.||.--.++..+
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999888888888654444443
No 51
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=51.99 E-value=18 Score=24.63 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=20.9
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
.+..++.+|+.||..|.-|.+.+...
T Consensus 46 ~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 46 QLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 35678888889999999888887764
No 52
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=50.61 E-value=24 Score=29.32 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=30.2
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLCNNILALM 36 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~ 36 (121)
..|.+||++|+.++..|..++...+..-..+...|
T Consensus 42 ~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 42 DSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999877766544
No 53
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.59 E-value=50 Score=22.45 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=20.3
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNIL 33 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il 33 (121)
|..--++||.||..|..+++.+..--..++
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788888888887777765444443
No 54
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=49.78 E-value=31 Score=23.61 Aligned_cols=29 Identities=41% Similarity=0.481 Sum_probs=19.3
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNN 31 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~ 31 (121)
++..+|-.|+-++..|.+||...+++-.+
T Consensus 40 ~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 40 ELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777776665443
No 55
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.62 E-value=16 Score=34.47 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=13.1
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKk 27 (121)
|..++++|++++..|-++|++|++
T Consensus 441 L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 441 LKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544
No 56
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=49.11 E-value=27 Score=29.96 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=13.6
Q ss_pred CcchhhhHHHHHhhHHHH
Q 042043 2 PELLGENEKLRKENAQLN 19 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~ 19 (121)
-+|.+||++|+-||..|.
T Consensus 100 ~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 100 KDLTEENEILQNENDSLR 117 (292)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368888888888887664
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.14 E-value=30 Score=27.65 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=18.6
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNNILAL 35 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~il~l 35 (121)
....|+.+|..|..||+.++..-+.+-.-
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777777777777666554433
No 58
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=47.68 E-value=46 Score=26.50 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=17.5
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
....|++||..|..|+++++..-.++-.+..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~ 100 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEA 100 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665554444433
No 59
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=46.25 E-value=43 Score=27.51 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=32.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 042043 8 NEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLD 45 (121)
Q Consensus 8 NerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~~q~d 45 (121)
-.-|.|||..|..++.+|++.-..+..++..|.+...+
T Consensus 224 ~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~~ 261 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGGA 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34689999999999999999999999999988886553
No 60
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=45.90 E-value=68 Score=21.83 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=34.1
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
|-.-.++|+--|.+|+.=|..-|..|..+...+.+|-.
T Consensus 3 L~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es 40 (67)
T PF10506_consen 3 LKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYES 40 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44557899999999999999999999999999999875
No 61
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=44.70 E-value=50 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=18.5
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNN 31 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~ 31 (121)
+-..|++||.+|..|+++++..-..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999998888554443
No 62
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=44.69 E-value=14 Score=25.09 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=9.4
Q ss_pred cchhhhHHHHHhhHHHH
Q 042043 3 ELLGENEKLRKENAQLN 19 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~ 19 (121)
+|.+.|.+|..||..|.
T Consensus 25 eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 25 ELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555556666655543
No 63
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.81 E-value=35 Score=27.29 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=22.7
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNI 32 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~i 32 (121)
+|.+||++|++++..+..|+..++..-+.+
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999998888888887766554444
No 64
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=43.28 E-value=17 Score=25.49 Aligned_cols=15 Identities=53% Similarity=0.583 Sum_probs=10.5
Q ss_pred hhhhHHHHHhhHHHH
Q 042043 5 LGENEKLRKENAQLN 19 (121)
Q Consensus 5 ~eENerLRkeN~~L~ 19 (121)
.+||++|+.||..|.
T Consensus 43 k~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 43 KEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777777664
No 65
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=42.18 E-value=42 Score=21.86 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=24.4
Q ss_pred hhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQ----LKGLCNNILALMT 37 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~----mKklCn~il~l~s 37 (121)
+..+|+++...|..||.. +-+-|.+|+.|+.
T Consensus 3 ~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~ 37 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELERERIKVSKACKELIEYCE 37 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc
Confidence 457888888888888765 4467899998887
No 66
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.93 E-value=67 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=15.9
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNI 32 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~i 32 (121)
|..||++|++++..|..++..+.+--..+
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655555554443333
No 67
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.78 E-value=39 Score=30.76 Aligned_cols=11 Identities=55% Similarity=0.752 Sum_probs=9.0
Q ss_pred cchhhhHHHHH
Q 042043 3 ELLGENEKLRK 13 (121)
Q Consensus 3 ~L~eENerLRk 13 (121)
.|..||+|||+
T Consensus 84 ~l~~eN~~L~~ 94 (472)
T TIGR03752 84 ALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHH
Confidence 47789999987
No 68
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.69 E-value=50 Score=27.10 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=29.5
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 042043 2 PELLGENEKLRKENAQLNNELSQLK----GLCNNILALMTNYAS 41 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mK----klCn~il~l~s~y~~ 41 (121)
.+|.+|+.+++.+...|.+|+..+| +||.-| .||+.|..
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi-RylqSY~~ 138 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYEKI-RYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc
Confidence 4678888888888888888888887 456555 46788875
No 69
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.97 E-value=44 Score=21.00 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=11.0
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 042043 10 KLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 10 rLRkeN~~L~~ELa~mKklC 29 (121)
|+|+++..+.+|+.++++.-
T Consensus 45 ~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555543
No 70
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=38.48 E-value=75 Score=26.01 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=27.9
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHhhcC
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLC---NNILALMTNYAS 41 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklC---n~il~l~s~y~~ 41 (121)
+..||++||.....|..++.++|+++ +++..-++++..
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~Fs 56 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIFS 56 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 55689999999999999999988877 444444544443
No 71
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=38.27 E-value=77 Score=25.79 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=24.9
Q ss_pred chhhhHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 4 LLGENEKLRK-------ENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 4 L~eENerLRk-------eN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
|.+||.+|++ -|++|..|++.+++....+=-.+..|-.
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~ 64 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKA 64 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655554 3667777788777777777666666644
No 72
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.93 E-value=48 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=30.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTN 38 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~ 38 (121)
+|..|..+||=.+..++.+|.+|++.=.+++.=|-+
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999877777655444
No 73
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.60 E-value=58 Score=25.40 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=26.7
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
+|..++..|+.++..|..+++.++..|..+-.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999888887653
No 74
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=35.52 E-value=1e+02 Score=23.06 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=25.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
||..|...=..=+.||..||..|...+..|+.|-.
T Consensus 50 en~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 50 ENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444467899999999999998887654
No 75
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=33.08 E-value=66 Score=21.06 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=18.8
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKk 27 (121)
..+...|+.||..|..||...+.
T Consensus 28 ~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678899999999999987764
No 76
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=33.01 E-value=68 Score=22.90 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q 042043 14 ENAQLNNELSQLKGLCN 30 (121)
Q Consensus 14 eN~~L~~ELa~mKklCn 30 (121)
||.+|.-|+-+.+.+|.
T Consensus 52 EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 52 ENIRLREELRRLQSFYV 68 (86)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666667766666663
No 77
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=30.76 E-value=1.2e+02 Score=23.55 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=19.3
Q ss_pred HHHHhhHHHHHHHHHHH----HHHHHHHHHHHhhcCC
Q 042043 10 KLRKENAQLNNELSQLK----GLCNNILALMTNYASG 42 (121)
Q Consensus 10 rLRkeN~~L~~ELa~mK----klCn~il~l~s~y~~~ 42 (121)
.|-++|.+|..||.+|+ ++|-++=++.++|-.-
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554 2455666777777664
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.50 E-value=52 Score=24.51 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=15.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 9 EKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 9 erLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
..|..+...|..||..++..|..+-.=++...+
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555555555555554444444444
No 79
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=30.35 E-value=33 Score=25.94 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=17.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQ 24 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~ 24 (121)
.|.+||-.||=||..|..=|+.
T Consensus 33 ~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 33 SLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHhhHHHHhhHHHHHHHhCC
Confidence 5788888888888888776665
No 80
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.17 E-value=50 Score=21.59 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=18.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKk 27 (121)
.+..+++.|+.+|..|..|.+.+..
T Consensus 35 ~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 35 KLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3556777788888888888887765
No 81
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=29.99 E-value=52 Score=28.50 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=14.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 042043 9 EKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 9 erLRkeN~~L~~ELa~mKklC 29 (121)
-.|+.||..|..|+++++..-
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 60 LVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888775433
No 82
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=29.73 E-value=56 Score=20.40 Aligned_cols=19 Identities=42% Similarity=0.408 Sum_probs=8.0
Q ss_pred cchhhhHHHHHhhHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNE 21 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~E 21 (121)
+|.-++.+|..||..|...
T Consensus 25 ~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 25 ELENEVSKLLNENVNLREL 43 (46)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 4555556666666655443
No 83
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=29.66 E-value=54 Score=23.67 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=25.3
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
.+..||+.|+.+|..|..|...++.- ..++..++.
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg----~~~i~e~AR 95 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG----RDYIEERAR 95 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHH
Confidence 45678999999999999888877766 445554443
No 84
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=29.64 E-value=37 Score=25.94 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=20.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
+|.+-|.+|++||..|.+ |+ .++-+.++.--..
T Consensus 78 eL~er~~~Le~EN~lLk~-~~-----spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 78 ELEERNSALERENSLLKT-LA-----SPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHh-hC-----CHHHHHHHHHhcc
Confidence 577788888888876642 32 3566666654433
No 85
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=28.92 E-value=36 Score=27.40 Aligned_cols=29 Identities=38% Similarity=0.452 Sum_probs=18.2
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNN 31 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~ 31 (121)
.|..+|.+|.+++..|..||...+..+.-
T Consensus 123 ~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 123 SLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 45666677777777766666665555443
No 86
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=28.00 E-value=1.3e+02 Score=24.92 Aligned_cols=14 Identities=57% Similarity=0.601 Sum_probs=8.5
Q ss_pred chhhhHHHHHhhHH
Q 042043 4 LLGENEKLRKENAQ 17 (121)
Q Consensus 4 L~eENerLRkeN~~ 17 (121)
+..||+.||.++..
T Consensus 71 ~~~en~~Lk~~l~~ 84 (284)
T COG1792 71 LALENEELKKELAE 84 (284)
T ss_pred HHHHhHHHHHHHHH
Confidence 44566666666643
No 87
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=27.89 E-value=1.5e+02 Score=22.94 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=18.4
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCN 30 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn 30 (121)
-.++||.+|..|...|+++-....
T Consensus 48 Q~~~LR~~~~~L~~~l~~Li~~Ar 71 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEELIENAR 71 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999888888765543
No 88
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=27.74 E-value=1.2e+02 Score=21.90 Aligned_cols=30 Identities=37% Similarity=0.575 Sum_probs=15.7
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNIL 33 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il 33 (121)
|..+|+.|-+.|-.+-.+|...|..+...+
T Consensus 39 l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~ 68 (150)
T PF07200_consen 39 LLAENEELAEQNLSLEPELEELRSQLQELY 68 (150)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 456677777777555566666655554443
No 89
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=27.66 E-value=1.5e+02 Score=20.22 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=17.9
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
|..||..||- .|..==-.||..|++|..+=.
T Consensus 11 LL~EN~~LKe---alrQ~N~~Mker~e~l~~wqe 41 (68)
T PF11577_consen 11 LLQENQDLKE---ALRQNNQAMKERFEELLAWQE 41 (68)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 5566666651 111111358899999887644
No 90
>PRK14127 cell division protein GpsB; Provisional
Probab=27.19 E-value=1.4e+02 Score=21.99 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=32.0
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
+.++-+.|-++|..|..|+.+++..-.++-.=++.|..
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~ 72 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGAS 72 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 56788999999999999999999988887777776644
No 91
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.87 E-value=1.6e+02 Score=20.97 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=5.7
Q ss_pred HHHhhHHHHHHHHH
Q 042043 11 LRKENAQLNNELSQ 24 (121)
Q Consensus 11 LRkeN~~L~~ELa~ 24 (121)
|..+|.+|..|...
T Consensus 51 L~~en~qLk~E~~~ 64 (79)
T PRK15422 51 LERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 92
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=26.84 E-value=1.2e+02 Score=25.23 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=29.4
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 6 GENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 6 eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
.+..+|..+|..|..||++++.+-.++-.|...+..
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~ 101 (284)
T COG1792 66 KSLKDLALENEELKKELAELEQLLEEVESLEEENKR 101 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999988888888775443
No 93
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=26.49 E-value=72 Score=23.18 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=13.3
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q 042043 10 KLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 10 rLRkeN~~L~~ELa~mKkl 28 (121)
.|-.+|..|..||+++|..
T Consensus 26 ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 26 ELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445777888888887753
No 94
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.09 E-value=1.1e+02 Score=21.29 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=25.3
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNI 32 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~i 32 (121)
++..+.++|-.+-.+|..||.+...-|+.+
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 467788899999999999999888888765
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.18 E-value=1.1e+02 Score=29.05 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=13.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 8 NEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 8 NerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
-++|+.+|..|.++|-+||+--..+-.
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544333333
No 96
>PF15294 Leu_zip: Leucine zipper
Probab=24.93 E-value=1.3e+02 Score=25.72 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=26.1
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
|..|..||+.||..|..=|...-++|...+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~ 160 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALD 160 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999988888888876653
No 97
>PF08251 Mastoparan_2: Mastoparan peptide; InterPro: IPR013214 Mastoparan (MP) peptides I, II and III are extracted from the venom gland of Protopolybia exigua (Neotropical social wasp). They are tetradecapeptides presenting from seven to ten hydrophobic amino acid residues and from two to four lysine residues in their primary sequences. These peptides cause the degranulation of mast cells. Protopolybia-MP-I also causes haemolysis of erythrocytes.
Probab=24.15 E-value=14 Score=18.73 Aligned_cols=7 Identities=71% Similarity=1.535 Sum_probs=5.7
Q ss_pred ccccccC
Q 042043 114 PWLELGK 120 (121)
Q Consensus 114 ~Wl~l~~ 120 (121)
.||.|||
T Consensus 2 nwlklgk 8 (14)
T PF08251_consen 2 NWLKLGK 8 (14)
T ss_pred cHHHHHH
Confidence 4999986
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.03 E-value=1.1e+02 Score=28.38 Aligned_cols=29 Identities=34% Similarity=0.382 Sum_probs=14.1
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNI 32 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~i 32 (121)
|.++++.|++++..|..||.+.++-|..+
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555544443
No 99
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.74 E-value=1.3e+02 Score=21.90 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=7.7
Q ss_pred hhHHHHHhhHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQLK 26 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mK 26 (121)
.+.+|+.++..|...+.+++
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~ 79 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLK 79 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 33333333333333333333
No 100
>PHA02109 hypothetical protein
Probab=23.59 E-value=1.4e+02 Score=24.72 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=30.7
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 5 LGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
.+|.-.|--.=..||+|++|+|-.--|+...|.+|.+
T Consensus 192 L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LS 228 (233)
T PHA02109 192 LKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLS 228 (233)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666778999999999999999999999976
No 101
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.41 E-value=1.4e+02 Score=21.26 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=17.7
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKGLCNNI 32 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKklCn~i 32 (121)
.=|.+.|+..|..|+.|...++..-+.+
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 3466777777777777776655544433
No 102
>COG3645 Uncharacterized phage-encoded protein [Function unknown]
Probab=23.26 E-value=56 Score=25.27 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=24.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
.++.|+-||+.|+.||+-|+=.. .|..+|+.
T Consensus 13 ~~~~l~le~~~~~~el~~~~PKv----~f~D~v~~ 43 (135)
T COG3645 13 LKAQLRLENEVLTVELAIAAPKV----EFADAVVE 43 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhCcch----HHHHHHhc
Confidence 49999999999999999998764 45555555
No 103
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=22.57 E-value=2.5e+02 Score=19.32 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=33.5
Q ss_pred CcchhhhHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHhhcCC
Q 042043 2 PELLGENEKLRKENAQLN----------NELSQLKGLCNNILALMTNYASG 42 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~----------~ELa~mKklCn~il~l~s~y~~~ 42 (121)
+.|..|-+.||+=|..+. ..+.++..-|++--.+|..|...
T Consensus 1 ~aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd~w~~I 51 (78)
T PF08651_consen 1 QALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETVESTNTLLDKWIRI 51 (78)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998764 46677778899999999988875
No 104
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=22.38 E-value=1.1e+02 Score=20.39 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCC
Q 042043 25 LKGLCNNILALMTNYASGQLD 45 (121)
Q Consensus 25 mKklCn~il~l~s~y~~~q~d 45 (121)
|-.+.++|+..+++|.....+
T Consensus 27 l~~lk~eil~viskYv~i~~~ 47 (70)
T PF03776_consen 27 LEQLKKEILEVISKYVEIDEE 47 (70)
T ss_dssp HHHHHHHHHHHHHHHS---CC
T ss_pred HHHHHHHHHHHHHhheecCcc
Confidence 456678999999999986443
No 105
>PF06047 SynMuv_product: Ras-induced vulval development antagonist; InterPro: IPR009269 This is a family of eukaryotic proteins with undetermined function.
Probab=22.30 E-value=81 Score=23.54 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.5
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 042043 9 EKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 9 erLRkeN~~L~~ELa~mKkl 28 (121)
-||||||...+.|=.++--+
T Consensus 61 vR~rKEnQvysaeekral~~ 80 (104)
T PF06047_consen 61 VRLRKENQVYSAEEKRALAM 80 (104)
T ss_pred HHHHHHHhhccHHHHHHHHH
Confidence 48999999999886665433
No 106
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=21.85 E-value=2.4e+02 Score=19.56 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=27.5
Q ss_pred hhhHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 042043 6 GENEKLRKENAQLNNELSQLK----GLCNNILALMTNYAS 41 (121)
Q Consensus 6 eENerLRkeN~~L~~ELa~mK----klCn~il~l~s~y~~ 41 (121)
.++.++|+...+|..|+.-=| +.|.+|+.|+-.+..
T Consensus 7 ~~~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~ 46 (71)
T KOG4119|consen 7 SKKPQMKKEVEQLKLEANIERIKVSKAAAELLEYCETHAT 46 (71)
T ss_pred cchHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCc
Confidence 467899999999999987544 567777777776664
No 107
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=21.48 E-value=2.5e+02 Score=25.50 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=34.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
+|..+|.+|...|..|..-|.++|..-..+..-|.+...
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 5 ELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567789999999999999999999998888888877766
No 108
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.25 E-value=1.1e+02 Score=22.17 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=22.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
+|......|=.||..|.-|-.++|..-..+-.
T Consensus 26 ~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 26 ELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556667899999999888877655544
No 109
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.17 E-value=38 Score=25.63 Aligned_cols=16 Identities=50% Similarity=0.534 Sum_probs=12.6
Q ss_pred chhhhHHHHHhhHHHH
Q 042043 4 LLGENEKLRKENAQLN 19 (121)
Q Consensus 4 L~eENerLRkeN~~L~ 19 (121)
..+||-+||.||..|-
T Consensus 82 VKEEnLKLrSENQVLG 97 (120)
T KOG3650|consen 82 VKEENLKLRSENQVLG 97 (120)
T ss_pred HHHhhhhhhhhhHHHH
Confidence 4578888888888864
No 110
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.76 E-value=1.4e+02 Score=25.41 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=19.1
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNIL 33 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il 33 (121)
|.+..-.|+|++....+||.++|..|+.|-
T Consensus 124 ~eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 124 LEETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666554
Done!