Query 042043
Match_columns 121
No_of_seqs 65 out of 67
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 23:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hjb_A Ccaat/enhancer binding 92.6 0.05 1.7E-06 37.6 1.8 27 3-29 47-73 (87)
2 1gu4_A CAAT/enhancer binding p 92.4 0.05 1.7E-06 36.9 1.7 26 3-28 47-72 (78)
3 2wt7_A Proto-oncogene protein 92.1 0.26 8.9E-06 31.4 4.7 37 3-39 27-63 (63)
4 2j5u_A MREC protein; bacterial 91.8 0.12 4E-06 40.6 3.3 32 3-34 23-54 (255)
5 1ci6_A Transcription factor AT 88.1 0.9 3.1E-05 29.0 4.7 35 3-37 27-61 (63)
6 1t2k_D Cyclic-AMP-dependent tr 85.9 0.78 2.7E-05 28.7 3.4 32 4-35 27-58 (61)
7 3a5t_A Transcription factor MA 85.6 0.026 8.8E-07 40.5 -4.1 35 3-37 69-103 (107)
8 1dh3_A Transcription factor CR 85.0 0.57 1.9E-05 29.4 2.4 29 2-30 25-53 (55)
9 1hjb_A Ccaat/enhancer binding 84.6 1.4 4.8E-05 30.3 4.4 37 4-40 41-77 (87)
10 1t2k_D Cyclic-AMP-dependent tr 84.3 1.8 6E-05 27.1 4.5 26 3-28 33-58 (61)
11 2yy0_A C-MYC-binding protein; 82.9 2.3 7.9E-05 26.6 4.6 34 6-39 19-52 (53)
12 2dgc_A Protein (GCN4); basic d 82.0 1 3.5E-05 28.9 2.7 28 3-30 34-61 (63)
13 2wt7_B Transcription factor MA 82.0 1.1 3.7E-05 31.2 3.0 29 4-32 60-88 (90)
14 1jnm_A Proto-oncogene C-JUN; B 80.8 0.32 1.1E-05 30.7 0.0 34 3-36 26-59 (62)
15 1jnm_A Proto-oncogene C-JUN; B 80.7 0.93 3.2E-05 28.5 2.2 28 2-29 32-59 (62)
16 3m48_A General control protein 80.4 1.9 6.4E-05 25.5 3.2 28 2-29 3-30 (33)
17 1gd2_E Transcription factor PA 80.3 0.78 2.7E-05 30.4 1.8 22 4-25 48-69 (70)
18 1gu4_A CAAT/enhancer binding p 80.0 1.1 3.9E-05 30.1 2.6 35 4-38 41-75 (78)
19 3he5_A Synzip1; heterodimeric 79.1 0.89 3E-05 28.6 1.6 27 2-28 13-46 (49)
20 2wt7_A Proto-oncogene protein 79.1 1.4 4.7E-05 27.9 2.6 29 2-30 33-61 (63)
21 1uii_A Geminin; human, DNA rep 79.1 3.8 0.00013 28.3 5.0 33 5-37 45-77 (83)
22 1ci6_A Transcription factor AT 79.0 1.7 5.9E-05 27.7 3.0 29 3-31 34-62 (63)
23 2jn6_A Protein CGL2762, transp 78.4 0.1 3.5E-06 33.8 -3.0 26 4-29 64-89 (97)
24 1deb_A APC protein, adenomatou 77.6 1.7 5.7E-05 28.1 2.6 30 4-33 8-41 (54)
25 2yy0_A C-MYC-binding protein; 74.6 3.3 0.00011 25.9 3.4 26 3-28 23-48 (53)
26 1avo_B 11S regulator; proteaso 74.1 3.6 0.00012 30.2 4.0 48 7-70 4-51 (140)
27 3s9g_A Protein hexim1; cyclin 72.4 1.8 6.2E-05 31.2 2.0 26 3-28 69-94 (104)
28 1uo4_A General control protein 70.1 4 0.00014 24.2 2.8 27 3-29 5-31 (34)
29 1dh3_A Transcription factor CR 68.9 0.53 1.8E-05 29.5 -1.3 22 2-23 32-53 (55)
30 1go4_E MAD1 (mitotic arrest de 67.1 3.5 0.00012 29.2 2.5 21 5-25 18-38 (100)
31 1wlq_A Geminin; coiled-coil; 2 65.0 10 0.00035 26.2 4.5 31 5-35 37-67 (83)
32 2dgc_A Protein (GCN4); basic d 64.1 1.5 5.3E-05 28.1 0.2 23 2-24 40-62 (63)
33 1t6f_A Geminin; coiled-coil, c 63.3 9.9 0.00034 22.8 3.6 30 4-33 5-34 (37)
34 2jee_A YIIU; FTSZ, septum, coi 61.4 15 0.00051 25.1 4.8 18 7-24 28-45 (81)
35 2bni_A General control protein 59.1 8.7 0.0003 22.7 2.8 27 3-29 5-31 (34)
36 4h22_A Leucine-rich repeat fli 58.7 11 0.00037 26.9 3.8 35 3-37 41-75 (103)
37 1ik9_A DNA repair protein XRCC 55.4 13 0.00046 28.6 4.2 32 3-34 136-167 (213)
38 1nkp_B MAX protein, MYC proto- 54.6 5.7 0.00019 25.8 1.7 17 11-27 52-68 (83)
39 3he5_B Synzip2; heterodimeric 53.4 35 0.0012 21.4 5.1 35 4-38 8-42 (52)
40 3ra3_B P2F; coiled coil domain 52.1 15 0.00053 20.6 3.0 17 9-25 3-19 (28)
41 3c3g_A Alpha/beta peptide with 50.4 20 0.0007 21.0 3.4 27 3-29 4-30 (33)
42 2wvr_A Geminin; DNA replicatio 50.3 25 0.00086 27.9 5.0 23 5-27 114-136 (209)
43 2xdj_A Uncharacterized protein 48.6 30 0.001 23.2 4.6 36 3-38 31-66 (83)
44 2zxx_A Geminin; coiled-coil, c 48.4 23 0.00078 24.1 4.0 24 5-28 33-56 (79)
45 1uii_A Geminin; human, DNA rep 47.3 28 0.00097 23.9 4.3 33 3-35 50-82 (83)
46 2r2v_A GCN4 leucine zipper; co 46.9 25 0.00084 20.7 3.4 27 3-29 5-31 (34)
47 2wuj_A Septum site-determining 46.2 11 0.00039 23.3 2.0 24 4-27 32-55 (57)
48 1kd8_A GABH AIV, GCN4 acid bas 45.9 24 0.00083 21.0 3.3 28 3-30 5-32 (36)
49 1fmh_A General control protein 45.8 12 0.00042 21.7 1.9 28 2-29 4-31 (33)
50 3vem_A Helicase protein MOM1; 45.3 28 0.00096 25.2 4.3 32 4-35 37-83 (115)
51 1got_G GT-gamma; complex (GTP- 44.2 20 0.00069 23.6 3.1 35 7-41 18-56 (73)
52 2wq1_A General control protein 42.8 31 0.0011 20.2 3.4 27 3-29 4-30 (33)
53 3c3f_A Alpha/beta peptide with 42.2 32 0.0011 20.2 3.4 27 3-29 5-31 (34)
54 1kd8_B GABH BLL, GCN4 acid bas 42.2 41 0.0014 20.0 3.9 28 3-30 5-32 (36)
55 1wt6_A Myotonin-protein kinase 42.1 54 0.0018 22.5 5.1 36 4-39 29-64 (81)
56 1a93_B MAX protein, coiled coi 41.9 12 0.0004 22.1 1.4 18 5-22 13-30 (34)
57 2hy6_A General control protein 41.6 24 0.00084 20.8 2.8 28 3-30 5-32 (34)
58 2j5u_A MREC protein; bacterial 40.6 18 0.00062 28.0 2.8 28 10-37 23-50 (255)
59 2oto_A M protein; helical coil 38.6 38 0.0013 24.2 4.1 20 4-23 27-46 (155)
60 1go4_E MAD1 (mitotic arrest de 38.3 27 0.00091 24.6 3.1 22 3-24 23-44 (100)
61 2zvf_A Alanyl-tRNA synthetase; 37.8 27 0.00092 24.5 3.1 21 4-24 37-57 (171)
62 3m91_A Proteasome-associated A 37.2 74 0.0025 19.7 5.0 36 3-38 13-48 (51)
63 2jee_A YIIU; FTSZ, septum, coi 37.0 46 0.0016 22.6 4.1 26 11-36 53-78 (81)
64 4dzn_A Coiled-coil peptide CC- 36.6 33 0.0011 19.8 2.8 25 3-27 6-30 (33)
65 3oja_A Leucine-rich immune mol 34.5 44 0.0015 26.9 4.3 30 5-34 441-470 (487)
66 3i00_A HIP-I, huntingtin-inter 33.3 73 0.0025 22.6 4.8 33 7-39 16-48 (120)
67 1a93_A Coiled coil, LZ, MYC pr 31.8 31 0.0011 20.1 2.2 22 4-25 12-33 (34)
68 2wvr_A Geminin; DNA replicatio 31.7 72 0.0025 25.2 4.9 37 3-39 119-155 (209)
69 1txp_A HnRNP C, heterogeneous 30.1 78 0.0027 17.9 3.9 23 17-39 3-25 (28)
70 3oja_A Leucine-rich immune mol 29.9 81 0.0028 25.3 5.1 32 4-35 447-478 (487)
71 2oxj_A Hybrid alpha/beta pepti 28.7 72 0.0025 18.7 3.4 26 3-28 5-30 (34)
72 4emc_A Monopolin complex subun 28.5 37 0.0013 26.5 2.8 27 2-28 23-49 (190)
73 2w6b_A RHO guanine nucleotide 28.2 1.2E+02 0.0042 19.5 4.8 35 3-37 14-48 (56)
74 1got_B GT-beta; complex (GTP-b 27.4 49 0.0017 24.1 3.1 26 6-31 2-27 (340)
75 2wt7_B Transcription factor MA 25.1 84 0.0029 21.6 3.8 26 3-28 52-77 (90)
76 1dip_A Delta-sleep-inducing pe 24.4 37 0.0013 23.2 1.8 16 3-18 26-41 (78)
77 3f79_A Probable two-component 23.7 42 0.0014 24.4 2.2 28 7-34 2-29 (255)
78 1am9_A Srebp-1A, protein (ster 23.5 69 0.0024 20.8 3.0 23 4-26 55-77 (82)
79 2zxx_A Geminin; coiled-coil, c 23.5 52 0.0018 22.3 2.4 26 4-29 46-71 (79)
80 2oto_A M protein; helical coil 22.8 96 0.0033 22.0 3.9 25 7-31 23-47 (155)
81 2kxo_A Cell division topologic 22.1 74 0.0025 21.7 3.1 20 26-45 41-60 (95)
82 2rn7_A IS629 ORFA; helix, all 22.1 3.2 0.00011 27.0 -3.8 19 5-23 70-88 (108)
83 3l4f_A RHO guanine nucleotide 21.7 1.5E+02 0.0052 19.2 4.3 39 3-41 11-49 (61)
84 4ath_A MITF, microphthalmia-as 21.4 1.7E+02 0.0059 19.8 4.7 30 7-36 40-69 (83)
85 1wlq_A Geminin; coiled-coil; 2 20.9 1.5E+02 0.0052 20.2 4.4 32 4-35 43-74 (83)
86 2wg5_A General control protein 20.5 66 0.0022 22.0 2.5 23 4-26 12-34 (109)
87 3q8t_A Beclin-1; autophagy, AT 20.5 96 0.0033 20.9 3.3 30 3-32 22-51 (96)
No 1
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=92.56 E-value=0.05 Score=37.59 Aligned_cols=27 Identities=52% Similarity=0.694 Sum_probs=16.2
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
.|..||.+||.+...|..|+..+|.+.
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666665543
No 2
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=92.45 E-value=0.05 Score=36.88 Aligned_cols=26 Identities=54% Similarity=0.731 Sum_probs=19.1
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
.|..||.+|+.+..+|..|++.+|.+
T Consensus 47 ~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777754
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=92.13 E-value=0.26 Score=31.39 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=31.7
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNY 39 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y 39 (121)
+|.++-+.|..+|..|..|+..++..+..+-.+|..|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H 63 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5778889999999999999999999998888887643
No 4
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=91.78 E-value=0.12 Score=40.56 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=24.4
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
.|.+||++||++|..|..++.++..+-.+.-.
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~r 54 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKD 54 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999988887644433
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=88.10 E-value=0.9 Score=29.00 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=27.8
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
+|..+.+.|..+|..|..+++++++-+..+-.+|.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888777777764
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.93 E-value=0.78 Score=28.74 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=17.1
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILAL 35 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l 35 (121)
|.++-+.|..+|..|.+|+..++.....|-.+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555444433
No 7
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=85.63 E-value=0.026 Score=40.54 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=25.2
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
.|..+.++|+.||..|..|+..||..|+.+..|..
T Consensus 69 ~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~ 103 (107)
T 3a5t_A 69 ELQQEVEKLASENASMKLELDALRSKYEALQNFAR 103 (107)
T ss_dssp TTSSTTTTTTSTTSHHHHTTTSSSSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999987753
No 8
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=84.97 E-value=0.57 Score=29.41 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=24.7
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLCN 30 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklCn 30 (121)
.+|..+...|..+|..|..++..++..|.
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778888999999999999999988764
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=84.55 E-value=1.4 Score=30.26 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=31.4
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYA 40 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~ 40 (121)
+..+.+.|.+||..|..++.++++....+..++..+-
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 5667889999999999999999999998888887643
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.25 E-value=1.8 Score=27.07 Aligned_cols=26 Identities=42% Similarity=0.516 Sum_probs=24.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
.|..+|..|+.+...|..|++++|.+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999865
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.93 E-value=2.3 Score=26.62 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=23.9
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042043 6 GENEKLRKENAQLNNELSQLKGLCNNILALMTNY 39 (121)
Q Consensus 6 eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y 39 (121)
.+.+.||+||..|..+...++..+.++-.=+.+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677777777777777777777777766555444
No 12
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.05 E-value=1 Score=28.94 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=22.7
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCN 30 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn 30 (121)
+|..+-+.|..+|..|..|+++++.++.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777888999999999999999987653
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=82.04 E-value=1.1 Score=31.25 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=23.6
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNI 32 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~i 32 (121)
|..+-++|++||..+.+|+..||..|..+
T Consensus 60 L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 60 LIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888999999999999998888765
No 14
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.84 E-value=0.32 Score=30.74 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=19.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALM 36 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~ 36 (121)
+|.++-+.|..+|..|..++..++..+..|-.+|
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666667777666666666655544443
No 15
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.70 E-value=0.93 Score=28.54 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.8
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
..|..+|..|+.+-..|..|++++|.+.
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999987653
No 16
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=80.41 E-value=1.9 Score=25.45 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.5
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
..|.+.-|.|-.+|..|..|.+++|.+-
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4578888999999999999999999763
No 17
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=80.29 E-value=0.78 Score=30.42 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=14.0
Q ss_pred chhhhHHHHHhhHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~m 25 (121)
|..||+.||..+..|..||..+
T Consensus 48 l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4556666777777776666543
No 18
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=80.05 E-value=1.1 Score=30.10 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.5
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTN 38 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~ 38 (121)
+...-+.|.+||..|..++.++++-..-|-.++..
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999887777666543
No 19
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.09 E-value=0.89 Score=28.58 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=18.6
Q ss_pred CcchhhhHHHHHhhHH-------HHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQ-------LNNELSQLKGL 28 (121)
Q Consensus 2 a~L~eENerLRkeN~~-------L~~ELa~mKkl 28 (121)
|.|..|||-|+|.|-. |..|++.+|+.
T Consensus 13 aslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 13 ASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 5677888999888854 55566655554
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.08 E-value=1.4 Score=27.95 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=25.4
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLCN 30 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklCn 30 (121)
..|..+|..|+.+-..|..|+.+++.+..
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999987653
No 21
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=79.08 E-value=3.8 Score=28.33 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=27.8
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
.+||+.|..+...|..|++.+|..-..+..+..
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999888877777654
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.95 E-value=1.7 Score=27.66 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=25.6
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNN 31 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~ 31 (121)
+|..+|..|+.+-..|..|+..+|.+--+
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58899999999999999999999987543
No 23
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=78.40 E-value=0.1 Score=33.81 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.5
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
...|+++|+++|..|..|++-+|+.+
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~ 89 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESC 89 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999988777654
No 24
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=77.57 E-value=1.7 Score=28.11 Aligned_cols=30 Identities=37% Similarity=0.452 Sum_probs=21.7
Q ss_pred chhhhHHHHHhhHHHHHHHH----HHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELS----QLKGLCNNIL 33 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa----~mKklCn~il 33 (121)
|...-|-||+||..|.+||. |+-|+=++-.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets 41 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEAS 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhh
Confidence 55667899999999999995 4555544433
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.59 E-value=3.3 Score=25.88 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=21.9
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
.|.-||+.||.++..|..++..+++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999998887764
No 26
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=74.11 E-value=3.6 Score=30.16 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=37.3
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCCceeeeeeec
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIG 70 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~~q~d~~~~~~g~~~dee~~~pKLFGV~Ig 70 (121)
-|+++-.-...+..|+.++...|+-|-.+++=... ++++|+- |||+|-
T Consensus 4 ~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IP-kiEDGNN---------------FGV~VQ 51 (140)
T 1avo_B 4 CNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIP-RIEDGNN---------------FGVAVQ 51 (140)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCSSCC---------------HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCCc---------------hhHHHH
Confidence 47777777888999999999999999888886655 4444431 999993
No 27
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.42 E-value=1.8 Score=31.16 Aligned_cols=26 Identities=38% Similarity=0.290 Sum_probs=19.1
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
+|..|.+|||.||.+|..|=..-++.
T Consensus 69 eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 69 ELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 57778888888888888876554443
No 28
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=70.13 E-value=4 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.8
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
.|.+.-|.|=.+|..|..|++++|++-
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 477888999999999999999999863
No 29
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=68.87 E-value=0.53 Score=29.55 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=16.8
Q ss_pred CcchhhhHHHHHhhHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELS 23 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa 23 (121)
..|..||..|+.++..|..+++
T Consensus 32 ~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 32 AVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3578888888888888876654
No 30
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.11 E-value=3.5 Score=29.16 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=9.9
Q ss_pred hhhhHHHHHhhHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~m 25 (121)
..+.+.|++||.+|.++.+.+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444443
No 31
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=64.98 E-value=10 Score=26.18 Aligned_cols=31 Identities=35% Similarity=0.493 Sum_probs=22.9
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKGLCNNILAL 35 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKklCn~il~l 35 (121)
.+||++|.++...+..|++.+|.--..+-.+
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999998888888877777655544443
No 32
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=64.07 E-value=1.5 Score=28.05 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=16.0
Q ss_pred CcchhhhHHHHHhhHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQ 24 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~ 24 (121)
..|..+|..|+.+...|..+|.+
T Consensus 40 ~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 40 EELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778888888888888877753
No 33
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=63.34 E-value=9.9 Score=22.83 Aligned_cols=30 Identities=43% Similarity=0.500 Sum_probs=24.8
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNIL 33 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il 33 (121)
...||++|-++=.+-..|+|++|.--.++.
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 357999999999999999999998766654
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.43 E-value=15 Score=25.07 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=8.6
Q ss_pred hhHHHHHhhHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQ 24 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~ 24 (121)
|++-||.+|..|+.|...
T Consensus 28 EieELKekN~~L~~e~~e 45 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555554444433
No 35
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=59.11 E-value=8.7 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
.|.+--|.|=.+|..|..|++++|.+-
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 467778899999999999999999864
No 36
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=58.65 E-value=11 Score=26.94 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=29.3
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
++.+.+..|+|++...++|+.+.|+.|+.+-.=+.
T Consensus 41 e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 41 ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999988654444
No 37
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=55.43 E-value=13 Score=28.62 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=26.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
.|..+|.+|..+|..|.++..+++.+.++++.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999988888877764
No 38
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.59 E-value=5.7 Score=25.78 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=6.5
Q ss_pred HHHhhHHHHHHHHHHHH
Q 042043 11 LRKENAQLNNELSQLKG 27 (121)
Q Consensus 11 LRkeN~~L~~ELa~mKk 27 (121)
|..++..|..|+.++++
T Consensus 52 L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 39
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.38 E-value=35 Score=21.44 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=25.6
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTN 38 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~ 38 (121)
|.....||+|+|-+|.+.=..+.+..-++..-+.+
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiar 42 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIAR 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHH
Confidence 44556799999999998877777776666655544
No 40
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=52.05 E-value=15 Score=20.59 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=10.7
Q ss_pred HHHHHhhHHHHHHHHHH
Q 042043 9 EKLRKENAQLNNELSQL 25 (121)
Q Consensus 9 erLRkeN~~L~~ELa~m 25 (121)
.||+..|++|..|++.+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 36666666666666654
No 41
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=50.38 E-value=20 Score=20.98 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=23.1
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
.|.+--|.|=.+|..|..|++++|.+-
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 366777889999999999999999764
No 42
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.27 E-value=25 Score=27.86 Aligned_cols=23 Identities=57% Similarity=0.687 Sum_probs=15.6
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKk 27 (121)
.+||+.|.++...|..|++.+|.
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~Lke 136 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKK 136 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888777766666665543
No 43
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.63 E-value=30 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=30.3
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTN 38 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~ 38 (121)
.|..|..+||=.+..+..+|.+|++.-.+++.=|.+
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999988888766643
No 44
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=48.41 E-value=23 Score=24.07 Aligned_cols=24 Identities=46% Similarity=0.573 Sum_probs=20.3
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKkl 28 (121)
.+||++|.++-..+..|++.||.-
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999888888888864
No 45
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.30 E-value=28 Score=23.91 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=25.7
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILAL 35 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l 35 (121)
.|-++++.|..+|..|..|+..+|.+...+-+|
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366778888888888888888888887765443
No 46
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=46.93 E-value=25 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
.|.+--|.|=.+|..|..|+++++++-
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 356777889999999999999999863
No 47
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.15 E-value=11 Score=23.35 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=16.4
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKk 27 (121)
+.++-+.|.++|..|..+|.+++.
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777888888888888877654
No 48
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=45.95 E-value=24 Score=21.00 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.4
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCN 30 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn 30 (121)
.|.+.-|.|-.+|..|..|.+++|++-.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4778889999999999999999998754
No 49
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=45.76 E-value=12 Score=21.72 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=22.6
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
|.|..|-.+-.-||-+|..|.+|+.--|
T Consensus 4 aqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4566677777888999999999988766
No 50
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=45.34 E-value=28 Score=25.24 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=24.8
Q ss_pred chhhhHHHHHhhHHH---------------HHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQL---------------NNELSQLKGLCNNILAL 35 (121)
Q Consensus 4 L~eENerLRkeN~~L---------------~~ELa~mKklCn~il~l 35 (121)
|.-|-+|||++...+ .+|+++.|+.|+-++.=
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe 83 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHE 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566889999998765 46888888888877643
No 51
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=44.22 E-value=20 Score=23.65 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.1
Q ss_pred hhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHhhcC
Q 042043 7 ENEKLRKENAQLNNELSQ----LKGLCNNILALMTNYAS 41 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~----mKklCn~il~l~s~y~~ 41 (121)
+-++||+++.+|..||+. +-+-|.+|+.|...|..
T Consensus 18 ~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~~ 56 (73)
T 1got_G 18 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSG 56 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCC
Confidence 457999999999999974 44679999999988865
No 52
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.84 E-value=31 Score=20.17 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
.|.+--|.|=.+|..|..|.+++|++-
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467788899999999999999999864
No 53
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=42.23 E-value=32 Score=20.24 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
.|.+--|.|=.+|..|..|.+++|.+-
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 366777889999999999999999864
No 54
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.17 E-value=41 Score=20.00 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCN 30 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn 30 (121)
.|.+--|.|-.+|..|..|.+++|.+-.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3667788999999999999999998754
No 55
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.11 E-value=54 Score=22.46 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=31.6
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILALMTNY 39 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y 39 (121)
+++|-.+.|-.|..+.++|-.+.+.+.+|..=|.+-
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999998777653
No 56
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=41.87 E-value=12 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=10.3
Q ss_pred hhhhHHHHHhhHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNEL 22 (121)
Q Consensus 5 ~eENerLRkeN~~L~~EL 22 (121)
..+.+.|||.|..|-.++
T Consensus 13 qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 345556666666665554
No 57
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=41.55 E-value=24 Score=20.76 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCN 30 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn 30 (121)
.|.+--|.|=.+|..|..|.+++|++-.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4677788999999999999999998743
No 58
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=40.58 E-value=18 Score=28.05 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=13.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 10 KLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 10 rLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
.|++||..|..|+++++.+-..+-.+-+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~ 50 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKK 50 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444443
No 59
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=38.56 E-value=38 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=10.9
Q ss_pred chhhhHHHHHhhHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELS 23 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa 23 (121)
|..||+.|+.+|..|..++.
T Consensus 27 l~~eN~~Lk~e~e~l~~~~~ 46 (155)
T 2oto_A 27 LRHENKDLKARLENAMEVAG 46 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665544443
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.35 E-value=27 Score=24.57 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=13.7
Q ss_pred cchhhhHHHHHhhHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQ 24 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~ 24 (121)
.|.-||++||+++..|-.+|.+
T Consensus 23 ~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 23 ELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666643
No 61
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=37.79 E-value=27 Score=24.50 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=10.4
Q ss_pred chhhhHHHHHhhHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQ 24 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~ 24 (121)
|.+|+..|+|+...|..+|+.
T Consensus 37 l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 37 FFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444
No 62
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.18 E-value=74 Score=19.71 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=26.8
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTN 38 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~ 38 (121)
+|..+|..|-..|..|..-|..+|..-..|-.-|.+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888999999998888766665554443
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.00 E-value=46 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=19.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042043 11 LRKENAQLNNELSQLKGLCNNILALM 36 (121)
Q Consensus 11 LRkeN~~L~~ELa~mKklCn~il~l~ 36 (121)
|+++|.+|..|.+.-..--+.|+.-|
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77788888888887776666666544
No 64
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.61 E-value=33 Score=19.83 Aligned_cols=25 Identities=40% Similarity=0.393 Sum_probs=15.5
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKk 27 (121)
.|..|..-|+||-+.|.-|++.+|.
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556666666666666666666553
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.54 E-value=44 Score=26.90 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=16.1
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
.++.++||++|.+|..|+....+.-.+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 445555666666666665555544444433
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.27 E-value=73 Score=22.64 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=21.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNNILALMTNY 39 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~il~l~s~y 39 (121)
.++.|++++..|..||..++-=+..++.=|...
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~ 48 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGH 48 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777776666555555544443
No 67
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=31.75 E-value=31 Score=20.12 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=16.2
Q ss_pred chhhhHHHHHhhHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~m 25 (121)
|.-|-|.||+.|.+|..=|.++
T Consensus 12 Ll~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 12 LISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5567788888888887766653
No 68
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.70 E-value=72 Score=25.25 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=26.9
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNY 39 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y 39 (121)
.|.++++.|.-|+..|..|+..+|.+...+-+|.+-+
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi 155 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELI 155 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888888888888888877766665533
No 69
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=30.14 E-value=78 Score=17.85 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042043 17 QLNNELSQLKGLCNNILALMTNY 39 (121)
Q Consensus 17 ~L~~ELa~mKklCn~il~l~s~y 39 (121)
...+||+|.|...+.++.-+.+.
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999888776654
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.95 E-value=81 Score=25.31 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=25.1
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILAL 35 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l 35 (121)
|.+||+||+++...+...++.|+-.+.++..-
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 447 LAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 56788888888888888888888877776543
No 71
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.73 E-value=72 Score=18.71 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=20.1
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
.|.+--|.|=.+|..|..|.+++|.+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35666777888888888888888765
No 72
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.54 E-value=37 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=21.8
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 2 PELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 2 a~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
..|..||..|..++.....|+.++++.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999998888888888887775
No 73
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.19 E-value=1.2e+02 Score=19.47 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=23.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMT 37 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s 37 (121)
+|-|+-.-|++||.+|..=|..=.+--..+=.++.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888999999888766554444444444433
No 74
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=27.36 E-value=49 Score=24.12 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=22.7
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHH
Q 042043 6 GENEKLRKENAQLNNELSQLKGLCNN 31 (121)
Q Consensus 6 eENerLRkeN~~L~~ELa~mKklCn~ 31 (121)
+|..+|+++...|..+|.++++.+.+
T Consensus 2 ~e~~~l~~~~~~l~~~~~~~~~~~~~ 27 (340)
T 1got_B 2 SELDQLRQEAEQLKNQIRDARKACAD 27 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 68889999999999999999888764
No 75
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.09 E-value=84 Score=21.56 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=17.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
+|..||..|..+=..|..|++++++-
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777777777777766643
No 76
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.45 E-value=37 Score=23.23 Aligned_cols=16 Identities=44% Similarity=0.684 Sum_probs=7.9
Q ss_pred cchhhhHHHHHhhHHH
Q 042043 3 ELLGENEKLRKENAQL 18 (121)
Q Consensus 3 ~L~eENerLRkeN~~L 18 (121)
+|.+.|.+|..||..|
T Consensus 26 EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 26 ELVEKNSQLERENTLL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555443
No 77
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Probab=23.68 E-value=42 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=17.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNNILA 34 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~il~ 34 (121)
-|..|++.|.+|.+||..++++=..|+.
T Consensus 2 ~n~eL~~~~~~l~~el~~A~~iQ~~llp 29 (255)
T 3f79_A 2 ANRELQASLNLLQEDQNAGRQVQMNMLP 29 (255)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4889999999999999999987766654
No 78
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=23.50 E-value=69 Score=20.75 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=14.0
Q ss_pred chhhhHHHHHhhHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLK 26 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mK 26 (121)
|..++++|..+|..|..++.+-+
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666666655543
No 79
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.47 E-value=52 Score=22.28 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=16.2
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLC 29 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklC 29 (121)
+.+|..+|+.+|..|..=+.+.+-+.
T Consensus 46 ~~eEi~~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 46 KDSEIARLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888877755555555443
No 80
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.79 E-value=96 Score=21.98 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=20.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNN 31 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~ 31 (121)
.|.+|+.+|..|.+|+.+++.....
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~~~~~~ 47 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAMEVAGR 47 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999888765554
No 81
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=22.15 E-value=74 Score=21.72 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhcCCCCC
Q 042043 26 KGLCNNILALMTNYASGQLD 45 (121)
Q Consensus 26 KklCn~il~l~s~y~~~q~d 45 (121)
-.+-++|+..+++|+....+
T Consensus 41 ~~lk~eIl~VIsKYv~Id~~ 60 (95)
T 2kxo_A 41 PTLRKALMEVLSKYVNVSLD 60 (95)
T ss_dssp HHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHHHHHHheecchh
Confidence 45668999999999996544
No 82
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=22.06 E-value=3.2 Score=26.97 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=11.0
Q ss_pred hhhhHHHHHhhHHHHHHHH
Q 042043 5 LGENEKLRKENAQLNNELS 23 (121)
Q Consensus 5 ~eENerLRkeN~~L~~ELa 23 (121)
..|+++|+++|..|..|..
T Consensus 70 ~~e~~~L~~e~~~L~~e~~ 88 (108)
T 2rn7_A 70 RQRLKEPERENRELRRSND 88 (108)
T ss_dssp SSCCCCCCSCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655443
No 83
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.75 E-value=1.5e+02 Score=19.20 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=25.4
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNILALMTNYAS 41 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~ 41 (121)
+|.+|-.-||.+|..+++=|.+-.+.-..+-.++-+|.+
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k 49 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788888888888776666555555555555555544
No 84
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=21.36 E-value=1.7e+02 Score=19.79 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=22.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042043 7 ENEKLRKENAQLNNELSQLKGLCNNILALM 36 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa~mKklCn~il~l~ 36 (121)
=...|+++|.++..|..+.|++-..--.|+
T Consensus 40 YI~~Lq~e~~r~~e~e~r~k~le~~n~~l~ 69 (83)
T 4ath_A 40 YIRKLQREQQRAKDLENRQKKLEHANRHLL 69 (83)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 356889999999999988888655444443
No 85
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.94 E-value=1.5e+02 Score=20.24 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=19.3
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGLCNNILAL 35 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKklCn~il~l 35 (121)
|-++.+.++.+...|..|+.+++.+....-+|
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~l 74 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655444
No 86
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.50 E-value=66 Score=21.98 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=12.6
Q ss_pred chhhhHHHHHhhHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLK 26 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mK 26 (121)
|..+...|+++...|..||.+++
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544
No 87
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.49 E-value=96 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=20.8
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKGLCNNI 32 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKklCn~i 32 (121)
.|..|-+.|-+++..|..||...+.-+..+
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888887766555443
Done!