Query 042043
Match_columns 121
No_of_seqs 65 out of 67
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 23:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042043.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042043hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpb_ a.38.1.1 (B:) Max prot 57.0 1.6 0.00012 26.8 0.9 22 4-25 59-80 (83)
2 d1am9a_ a.38.1.1 (A:) SREBP-1a 56.3 4.5 0.00033 24.6 3.0 25 3-27 54-78 (80)
3 g1avo.1 a.24.8.1 (A:,B:) Prote 48.7 8.9 0.00065 28.0 4.0 47 8-70 65-111 (200)
4 d1gg2g_ a.137.3.1 (G:) Transdu 47.8 9.8 0.00071 22.4 3.4 35 9-43 3-41 (54)
5 d2ncda_ c.37.1.9 (A:) Kinesin 43.1 7.5 0.00055 29.2 2.9 32 4-35 1-43 (368)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 28.3 16 0.0012 21.1 2.1 17 10-26 37-53 (61)
7 d1tbge_ a.137.3.1 (E:) Transdu 24.7 37 0.0027 20.8 3.4 36 7-42 11-50 (68)
8 d1r8ia_ a.8.7.1 (A:) Typo IV s 22.7 55 0.004 21.7 4.4 33 1-33 3-35 (187)
9 d1ivsa1 a.2.7.3 (A:797-862) Va 18.3 46 0.0033 19.0 2.8 22 4-25 2-23 (66)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 18.0 62 0.0045 18.9 3.4 25 4-28 52-76 (79)
No 1
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.01 E-value=1.6 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=13.8
Q ss_pred chhhhHHHHHhhHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~m 25 (121)
|.++++.|+++|..|..+|.++
T Consensus 59 l~~~~~~l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 59 HQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666543
No 2
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.31 E-value=4.5 Score=24.62 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=16.0
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHH
Q 042043 3 ELLGENEKLRKENAQLNNELSQLKG 27 (121)
Q Consensus 3 ~L~eENerLRkeN~~L~~ELa~mKk 27 (121)
.|..+|+.|+.+|..|..++.+.+.
T Consensus 54 ~L~~~~~~L~~e~~~lk~~~~~~~~ 78 (80)
T d1am9a_ 54 FLQHSNQKLKQENLSLRTAVHKSKS 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3556666777777777666666554
No 3
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.67 E-value=8.9 Score=27.99 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=32.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCCceeeeeeec
Q 042043 8 NEKLRKENAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLPEGKTVDELDLTPRLFGVSIG 70 (121)
Q Consensus 8 NerLRkeN~~L~~ELa~mKklCn~il~l~s~y~~~q~d~~~~~~g~~~dee~~~pKLFGV~Ig 70 (121)
|+++-.-=..+..|+..+...|+-|--+|+=... ++++|+- |||+|-
T Consensus 65 N~~I~~l~~~vkpei~~L~e~~~~vk~WV~l~IP-kiEDGNN---------------FGV~VQ 111 (200)
T g1avo.1 65 NEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIP-RIEDGNN---------------FGVAVQ 111 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCSSCC---------------HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ccccCCc---------------ccHHHH
Confidence 5666666667778888888888887777765444 5555431 999993
No 4
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=47.80 E-value=9.8 Score=22.35 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHhhHHHHHHHHH----HHHHHHHHHHHHHhhcCCC
Q 042043 9 EKLRKENAQLNNELSQ----LKGLCNNILALMTNYASGQ 43 (121)
Q Consensus 9 erLRkeN~~L~~ELa~----mKklCn~il~l~s~y~~~q 43 (121)
+.+||+..+|..|+.. +-+-|.+|+.|...|....
T Consensus 3 ~q~rk~VeqLr~e~~~~RikvS~aa~~l~~y~e~~~~~D 41 (54)
T d1gg2g_ 3 AQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKED 41 (54)
T ss_dssp HHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhcCcCC
Confidence 5789999999999874 5688999999999998753
No 5
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=43.09 E-value=7.5 Score=29.20 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=20.6
Q ss_pred chhhhHHHHHhhHHHHHHHHHH-----------HHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQL-----------KGLCNNILAL 35 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~m-----------KklCn~il~l 35 (121)
|..|+++|.+.+.++..|+..+ |+|.|+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 43 (368)
T d2ncda_ 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 43 (368)
T ss_dssp CCSSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 4567777777777777776544 4556666553
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.33 E-value=16 Score=21.08 Aligned_cols=17 Identities=35% Similarity=0.343 Sum_probs=8.3
Q ss_pred HHHHhhHHHHHHHHHHH
Q 042043 10 KLRKENAQLNNELSQLK 26 (121)
Q Consensus 10 rLRkeN~~L~~ELa~mK 26 (121)
.|++++..|..|..+++
T Consensus 37 ~Lq~~~~~L~~e~~~L~ 53 (61)
T d1uklc_ 37 YLQQVNHKLRQENMVLK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555554444
No 7
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.66 E-value=37 Score=20.78 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=29.4
Q ss_pred hhHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHhhcCC
Q 042043 7 ENEKLRKENAQLNNELS----QLKGLCNNILALMTNYASG 42 (121)
Q Consensus 7 ENerLRkeN~~L~~ELa----~mKklCn~il~l~s~y~~~ 42 (121)
+-+.||++..+|..|+. ..-+-|.+|+.|+..+...
T Consensus 11 d~~~lk~~VeQLr~Ea~i~R~~VS~aa~dl~~yce~~~~~ 50 (68)
T d1tbge_ 11 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGE 50 (68)
T ss_dssp TTHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHTTTTS
T ss_pred hHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhcCCC
Confidence 56889999999999986 3456799999999887763
No 8
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=22.69 E-value=55 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042043 1 MPELLGENEKLRKENAQLNNELSQLKGLCNNIL 33 (121)
Q Consensus 1 ~a~L~eENerLRkeN~~L~~ELa~mKklCn~il 33 (121)
++...++-++++..-.+|..+|.++|++++.|-
T Consensus 3 ~~~~~eql~q~~~ql~~~k~Ql~q~k~~~~s~t 35 (187)
T d1r8ia_ 3 LIKQGEQLEQMAQQLEQLKSQLETQKNMYESMA 35 (187)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678889999999999999999999988664
No 9
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=18.34 E-value=46 Score=19.03 Aligned_cols=22 Identities=9% Similarity=-0.083 Sum_probs=10.6
Q ss_pred chhhhHHHHHhhHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQL 25 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~m 25 (121)
+..|-+||.|+=..|..++...
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~ 23 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERS 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444443
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.97 E-value=62 Score=18.85 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=0.0
Q ss_pred chhhhHHHHHhhHHHHHHHHHHHHH
Q 042043 4 LLGENEKLRKENAQLNNELSQLKGL 28 (121)
Q Consensus 4 L~eENerLRkeN~~L~~ELa~mKkl 28 (121)
|..++.+|..+...|..+...+++.
T Consensus 52 L~~~~~~l~~~~~~L~~~~~~L~~~ 76 (79)
T d1nlwa_ 52 LEDSDRKAVHQIDQLQREQRHLKRQ 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Done!