Query 042044
Match_columns 218
No_of_seqs 232 out of 1647
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 2.1E-37 4.5E-42 256.3 7.7 141 1-141 1-172 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 4E-34 8.6E-39 204.5 4.4 77 2-78 1-77 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.4E-30 3.1E-35 188.7 6.3 73 2-74 1-74 (83)
4 smart00432 MADS MADS domain. 100.0 1.9E-30 4.1E-35 175.9 4.7 58 2-59 1-58 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 1.5E-29 3.2E-34 171.6 4.1 58 2-59 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1.3E-27 2.8E-32 157.1 1.4 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 4.9E-20 1.1E-24 137.9 9.2 95 69-163 1-99 (100)
8 KOG0015 Regulator of arginine 99.8 2.8E-20 6.2E-25 160.0 1.5 64 2-66 63-127 (338)
9 COG5068 ARG80 Regulator of arg 99.5 2.1E-14 4.5E-19 128.8 2.7 66 1-66 81-146 (412)
10 PF10584 Proteasome_A_N: Prote 86.1 0.16 3.4E-06 27.8 -0.6 15 42-56 2-16 (23)
11 PF06698 DUF1192: Protein of u 84.9 1.6 3.4E-05 29.5 3.6 32 105-136 12-43 (59)
12 PF06005 DUF904: Protein of un 83.2 12 0.00025 26.2 7.6 47 114-161 1-47 (72)
13 PRK13169 DNA replication intia 79.4 16 0.00034 27.8 7.7 48 116-164 7-54 (110)
14 PRK04098 sec-independent trans 78.8 1.5 3.3E-05 35.4 2.1 78 42-128 14-95 (158)
15 PF06156 DUF972: Protein of un 77.7 19 0.0004 27.2 7.7 48 116-164 7-54 (107)
16 smart00338 BRLZ basic region l 77.6 11 0.00024 25.3 5.9 37 128-164 15-51 (65)
17 PF00170 bZIP_1: bZIP transcri 77.0 13 0.00027 24.9 6.1 36 129-164 16-51 (64)
18 cd07429 Cby_like Chibby, a nuc 76.3 3.6 7.9E-05 31.1 3.4 21 143-163 76-96 (108)
19 PF07106 TBPIP: Tat binding pr 72.3 14 0.00031 29.6 6.3 54 84-141 83-136 (169)
20 PF07716 bZIP_2: Basic region 70.6 25 0.00054 22.7 6.1 36 128-163 14-49 (54)
21 PHA03155 hypothetical protein; 67.3 35 0.00076 26.0 6.9 59 79-137 7-65 (115)
22 TIGR01478 STEVOR variant surfa 67.3 9.4 0.0002 33.8 4.4 44 7-71 25-69 (295)
23 PF05812 Herpes_BLRF2: Herpesv 67.2 26 0.00057 26.9 6.4 56 82-137 5-64 (118)
24 PHA03162 hypothetical protein; 66.6 35 0.00077 26.7 7.0 57 81-137 14-74 (135)
25 smart00787 Spc7 Spc7 kinetocho 65.5 36 0.00077 30.5 7.9 50 92-141 177-228 (312)
26 PF08317 Spc7: Spc7 kinetochor 65.3 37 0.00081 30.3 8.1 72 93-164 183-262 (325)
27 KOG1962 B-cell receptor-associ 60.1 41 0.00089 28.6 6.9 70 93-162 133-209 (216)
28 PRK01919 tatB sec-independent 58.4 19 0.00041 29.4 4.4 28 43-72 15-42 (169)
29 PF10491 Nrf1_DNA-bind: NLS-bi 55.2 23 0.0005 29.9 4.5 47 26-72 35-88 (214)
30 KOG3612 PHD Zn-finger protein 53.2 1.5E+02 0.0032 28.7 10.0 71 35-105 404-478 (588)
31 KOG4603 TBP-1 interacting prot 52.7 57 0.0012 26.9 6.3 21 34-54 43-63 (201)
32 COG4467 Regulator of replicati 51.6 83 0.0018 23.9 6.5 48 116-164 7-54 (114)
33 PRK01371 sec-independent trans 49.5 7.5 0.00016 30.7 0.7 54 42-120 14-67 (137)
34 PHA02592 52 DNA topisomerase I 47.9 2.4E+02 0.0052 26.5 10.5 43 25-72 284-326 (439)
35 PF04645 DUF603: Protein of un 47.6 1.1E+02 0.0023 25.2 7.0 65 77-142 95-163 (181)
36 TIGR02338 gimC_beta prefoldin, 46.8 1.2E+02 0.0025 22.5 8.2 12 62-73 5-16 (110)
37 KOG1853 LIS1-interacting prote 46.0 1.9E+02 0.0041 25.5 8.7 79 85-163 96-181 (333)
38 PF07106 TBPIP: Tat binding pr 42.9 87 0.0019 25.0 6.1 53 84-137 113-165 (169)
39 COG4917 EutP Ethanolamine util 42.8 19 0.00041 28.4 2.0 25 35-59 59-83 (148)
40 PF14723 SSFA2_C: Sperm-specif 41.9 46 0.001 27.3 4.2 18 118-135 160-177 (179)
41 PRK09822 lipopolysaccharide co 41.8 15 0.00033 31.7 1.5 40 19-59 118-160 (269)
42 smart00340 HALZ homeobox assoc 41.3 61 0.0013 20.4 3.7 23 142-164 8-30 (44)
43 PF14645 Chibby: Chibby family 40.9 38 0.00081 25.9 3.4 22 142-163 74-95 (116)
44 KOG4637 Adaptor for phosphoino 40.1 24 0.00051 32.5 2.5 38 33-73 367-412 (464)
45 KOG4797 Transcriptional regula 38.4 62 0.0013 24.6 4.1 18 142-159 70-87 (123)
46 COG0139 HisI Phosphoribosyl-AM 38.4 5.5 0.00012 30.2 -1.5 34 20-53 53-95 (111)
47 KOG1853 LIS1-interacting prote 38.0 65 0.0014 28.2 4.7 49 116-164 86-158 (333)
48 PTZ00046 rifin; Provisional 37.6 24 0.00052 32.2 2.2 32 36-76 39-71 (358)
49 COG2433 Uncharacterized conser 37.0 2.4E+02 0.0051 27.9 8.7 18 117-134 450-467 (652)
50 KOG0837 Transcriptional activa 35.8 3.1E+02 0.0066 24.2 8.5 52 113-164 198-252 (279)
51 PF01502 PRA-CH: Phosphoribosy 35.5 4 8.6E-05 28.9 -2.5 37 17-53 17-63 (75)
52 PF10226 DUF2216: Uncharacteri 34.5 2.5E+02 0.0054 23.5 7.4 18 144-161 60-77 (195)
53 PTZ00370 STEVOR; Provisional 33.7 63 0.0014 28.7 4.1 42 8-71 26-68 (296)
54 COG5068 ARG80 Regulator of arg 33.2 22 0.00047 33.0 1.2 59 8-72 18-77 (412)
55 PF14662 CCDC155: Coiled-coil 32.9 2.9E+02 0.0064 23.1 8.5 19 143-161 71-89 (193)
56 PF06785 UPF0242: Uncharacteri 32.9 3.9E+02 0.0084 24.5 9.3 41 124-164 130-173 (401)
57 PF01166 TSC22: TSC-22/dip/bun 32.7 36 0.00078 22.9 1.9 18 142-159 17-34 (59)
58 PF00521 DNA_topoisoIV: DNA gy 32.7 4.1E+02 0.0088 24.6 9.6 63 3-72 243-315 (426)
59 PRK10265 chaperone-modulator p 32.5 99 0.0021 22.7 4.5 75 32-107 10-98 (101)
60 COG4831 Roadblock/LC7 domain [ 32.5 27 0.00058 26.0 1.3 29 30-59 3-31 (109)
61 KOG0709 CREB/ATF family transc 31.7 68 0.0015 30.3 4.1 52 113-164 233-311 (472)
62 PF08687 ASD2: Apx/Shroom doma 31.4 2E+02 0.0043 25.2 6.8 49 123-171 77-125 (264)
63 PF02183 HALZ: Homeobox associ 31.0 36 0.00079 21.5 1.6 27 80-106 12-38 (45)
64 PRK10884 SH3 domain-containing 30.5 3E+02 0.0066 23.0 7.6 22 85-106 91-112 (206)
65 TIGR03752 conj_TIGR03752 integ 30.1 4.4E+02 0.0095 25.2 9.2 60 84-152 70-129 (472)
66 PF09941 DUF2173: Uncharacteri 29.5 33 0.00071 26.0 1.4 27 32-59 3-29 (108)
67 PRK15422 septal ring assembly 28.8 2.2E+02 0.0048 20.3 7.5 40 114-154 1-40 (79)
68 PF13758 Prefoldin_3: Prefoldi 28.5 46 0.001 24.8 2.0 16 77-92 9-24 (99)
69 PF10211 Ax_dynein_light: Axon 28.1 3.4E+02 0.0073 22.3 9.7 16 145-160 169-184 (189)
70 PRK00708 sec-independent trans 27.7 35 0.00076 28.9 1.4 35 34-72 8-42 (209)
71 PF07888 CALCOCO1: Calcium bin 27.5 5.8E+02 0.013 24.8 10.9 27 32-59 79-112 (546)
72 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.2 2.9E+02 0.0062 21.1 9.5 67 88-163 60-129 (132)
73 KOG0183 20S proteasome, regula 27.1 30 0.00065 29.5 0.9 16 41-56 4-19 (249)
74 PRK00182 tatB sec-independent 26.9 16 0.00035 29.6 -0.7 35 34-72 9-43 (160)
75 PF10504 DUF2452: Protein of u 26.7 3.5E+02 0.0075 21.9 7.6 48 115-162 28-75 (159)
76 KOG2129 Uncharacterized conser 26.4 2.9E+02 0.0062 26.1 7.1 64 98-164 162-226 (552)
77 PRK10884 SH3 domain-containing 26.4 3.9E+02 0.0084 22.4 8.5 19 84-102 97-115 (206)
78 PF13870 DUF4201: Domain of un 26.3 3.4E+02 0.0073 21.7 9.7 73 89-164 15-102 (177)
79 PF11232 Med25: Mediator compl 26.3 35 0.00077 27.4 1.2 25 37-61 109-134 (152)
80 PF15254 CCDC14: Coiled-coil d 26.1 5.3E+02 0.011 26.3 9.2 23 142-164 458-480 (861)
81 PF06751 EutB: Ethanolamine am 26.0 22 0.00049 33.1 -0.0 11 202-212 146-156 (444)
82 PRK15067 ethanolamine ammonia 25.9 30 0.00064 32.5 0.7 17 51-69 8-24 (461)
83 KOG4005 Transcription factor X 25.9 1.3E+02 0.0029 26.0 4.6 19 144-162 116-134 (292)
84 COG5185 HEC1 Protein involved 25.4 5.2E+02 0.011 24.9 8.7 71 89-162 346-416 (622)
85 PF09755 DUF2046: Uncharacteri 25.2 5.1E+02 0.011 23.3 8.7 33 121-153 106-149 (310)
86 PF10623 PilI: Plasmid conjuga 24.8 69 0.0015 22.9 2.3 31 42-72 8-41 (83)
87 PRK09343 prefoldin subunit bet 24.7 3.1E+02 0.0067 20.8 6.1 11 62-72 9-19 (121)
88 PF08614 ATG16: Autophagy prot 24.7 3.9E+02 0.0084 21.8 10.4 23 142-164 161-183 (194)
89 KOG3584 cAMP response element 24.6 1.3E+02 0.0027 27.0 4.3 36 128-163 301-336 (348)
90 PF14009 DUF4228: Domain of un 24.3 55 0.0012 25.6 2.0 31 40-72 14-46 (181)
91 PF14357 DUF4404: Domain of un 24.1 2.2E+02 0.0047 20.3 4.9 70 92-163 2-74 (85)
92 PF09726 Macoilin: Transmembra 24.1 3.7E+02 0.008 26.9 8.0 89 85-176 458-572 (697)
93 PF09158 MotCF: Bacteriophage 23.6 15 0.00033 27.5 -1.3 53 5-72 19-72 (103)
94 PF09744 Jnk-SapK_ap_N: JNK_SA 23.2 4E+02 0.0086 21.4 9.1 20 143-162 93-112 (158)
95 PF06657 Cep57_MT_bd: Centroso 23.1 2.8E+02 0.006 19.5 6.7 53 84-140 21-73 (79)
96 COG3883 Uncharacterized protei 23.0 3.4E+02 0.0073 23.9 6.7 23 116-138 79-101 (265)
97 TIGR02231 conserved hypothetic 22.7 5.1E+02 0.011 24.5 8.5 30 112-141 122-151 (525)
98 PF04697 Pinin_SDK_N: pinin/SD 22.6 91 0.002 24.4 2.7 36 83-118 6-41 (134)
99 cd00187 TOP4c DNA Topoisomeras 22.5 6.6E+02 0.014 23.7 9.3 62 4-72 253-327 (445)
100 PRK11637 AmiB activator; Provi 22.5 6.1E+02 0.013 23.3 10.9 25 116-140 74-98 (428)
101 KOG3119 Basic region leucine z 22.2 2.2E+02 0.0048 24.8 5.5 48 117-164 193-240 (269)
102 KOG4643 Uncharacterized coiled 22.1 5.9E+02 0.013 26.9 8.9 20 33-53 139-158 (1195)
103 KOG4196 bZIP transcription fac 22.1 46 0.001 26.0 1.0 19 85-103 86-104 (135)
104 KOG4252 GTP-binding protein [S 21.6 49 0.0011 27.8 1.2 28 39-72 91-118 (246)
105 PF04849 HAP1_N: HAP1 N-termin 21.5 1.2E+02 0.0027 27.1 3.7 23 142-164 163-185 (306)
106 PF11559 ADIP: Afadin- and alp 21.0 4E+02 0.0086 20.6 10.1 21 143-163 105-125 (151)
107 PLN03128 DNA topoisomerase 2; 21.0 83 0.0018 33.2 2.9 39 17-55 988-1026(1135)
108 PF02416 MttA_Hcf106: mttA/Hcf 20.5 13 0.00029 24.3 -2.0 29 43-73 12-40 (53)
109 PF10662 PduV-EutP: Ethanolami 20.5 88 0.0019 24.7 2.4 25 35-59 58-82 (143)
110 PRK13729 conjugal transfer pil 20.3 4.2E+02 0.0091 25.3 7.2 21 142-162 100-120 (475)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=2.1e-37 Score=256.26 Aligned_cols=141 Identities=40% Similarity=0.637 Sum_probs=116.7
Q ss_pred CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch--HHHHHHHHhhhcccccc
Q 042044 1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP--MFEILEAYHKQSGKKLW 78 (218)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~--~~~il~RY~~~~~~~~~ 78 (218)
||||||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+||+++ +..|++||...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999976 99999999876543211
Q ss_pred c---ccc----------------------chhhhHHHHhHhHhhhhhh---hhhhccCCCCCCCCH-HHHHHHHHHHHHh
Q 042044 79 D---AKH----------------------ENLYNEIDRIKKENDSMQI---KLRHLKGEDVTSLNH-KELMALEDALENG 129 (218)
Q Consensus 79 ~---~~~----------------------e~l~~el~kLkke~~~L~~---~lR~l~GedL~~Ls~-~EL~~LE~~Le~~ 129 (218)
. ... .........++...+.+.. ..+++.|++|.+++. .+|..++.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 0 000 0122333444555555543 377899999999999 9999999999999
Q ss_pred hHhHHHHHHHHH
Q 042044 130 LTGIRDKQSEMM 141 (218)
Q Consensus 130 L~~VR~RK~~ll 141 (218)
+..+|..+...+
T Consensus 161 ~~~~~~~~~~~~ 172 (195)
T KOG0014|consen 161 LHNSRSSKSKPL 172 (195)
T ss_pred hcCCCCCCCcCC
Confidence 999999887766
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=4e-34 Score=204.50 Aligned_cols=77 Identities=68% Similarity=1.090 Sum_probs=74.0
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcccccc
Q 042044 2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLW 78 (218)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~~~ 78 (218)
||+||+|++|||+.+|+|||+||++||||||+||||||||+||+|||||+|++|+|++.++++||+||++.++.++|
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~~~ 77 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSSLW 77 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccccC
Confidence 89999999999999999999999999999999999999999999999999999999984499999999999988776
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.4e-30 Score=188.69 Aligned_cols=73 Identities=44% Similarity=0.727 Sum_probs=70.0
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch-HHHHHHHHhhhcc
Q 042044 2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP-MFEILEAYHKQSG 74 (218)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~-~~~il~RY~~~~~ 74 (218)
||+||+|++|+|..+|+|||+||+.||+|||+||||||||+||+|||||+|+.+.||+++ +..++++|...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~ 74 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSA 74 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCH
Confidence 899999999999999999999999999999999999999999999999999999999977 9999999987654
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=1.9e-30 Score=175.85 Aligned_cols=58 Identities=67% Similarity=1.074 Sum_probs=57.5
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCC
Q 042044 2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59 (218)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s 59 (218)
||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.||+
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence 8999999999999999999999999999999999999999999999999999999998
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=1.5e-29 Score=171.58 Aligned_cols=58 Identities=67% Similarity=1.064 Sum_probs=57.4
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCC
Q 042044 2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59 (218)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s 59 (218)
||+||+|++|+|..+|++||+||+.||+|||+||||||||+||+|||||+|+++.||+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999998
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.93 E-value=1.3e-27 Score=157.12 Aligned_cols=51 Identities=53% Similarity=0.896 Sum_probs=47.0
Q ss_pred EEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCC
Q 042044 9 KRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59 (218)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s 59 (218)
|+|+|.+.|++||+||+.||+|||.|||+||||+||+|||||+|++|.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.82 E-value=4.9e-20 Score=137.90 Aligned_cols=95 Identities=46% Similarity=0.794 Sum_probs=91.6
Q ss_pred HhhhccccccccccchhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHH----HHH
Q 042044 69 YHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMM----ERM 144 (218)
Q Consensus 69 Y~~~~~~~~~~~~~e~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll----~~l 144 (218)
|+++++.+.|+..++.+..++.+|+.+++.|+..+|+++|+||++||++||..||++|+.||.+||+||.++| +++
T Consensus 1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l 80 (100)
T PF01486_consen 1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL 80 (100)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 042044 145 RKNGKMLEEEHNYLKYVLR 163 (218)
Q Consensus 145 kkk~~~l~een~~L~~~~~ 163 (218)
++|++.|.++|..|+.++.
T Consensus 81 ~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 81 KKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999997764
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.78 E-value=2.8e-20 Score=159.97 Aligned_cols=64 Identities=36% Similarity=0.635 Sum_probs=60.2
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch-HHHHH
Q 042044 2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP-MFEIL 66 (218)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~-~~~il 66 (218)
||.||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|.|++ | ++.||
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT-pKLep~i 127 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-PKLEPMI 127 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc-ccccccc
Confidence 6999999999999999999999999999999999999999999999999999999999 6 44444
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.46 E-value=2.1e-14 Score=128.83 Aligned_cols=66 Identities=33% Similarity=0.563 Sum_probs=61.6
Q ss_pred CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHH
Q 042044 1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEIL 66 (218)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il 66 (218)
|||+||.|..|+|+++|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|++.+.+.|+
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~ 146 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVV 146 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccc
Confidence 789999999999999999999999999999999999999999999999999999999994444444
No 10
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=86.13 E-value=0.16 Score=27.83 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=11.8
Q ss_pred ceeeeeeecCCCCcc
Q 042044 42 KVSLIIFATSGKMHD 56 (218)
Q Consensus 42 ~v~liifs~~gk~~~ 56 (218)
|-++.+|||.|+++.
T Consensus 2 D~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQ 16 (23)
T ss_dssp SSSTTSBBTTSSBHH
T ss_pred CCCceeECCCCeEEe
Confidence 345679999999975
No 11
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=84.92 E-value=1.6 Score=29.53 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=27.2
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHHhhHhHHHH
Q 042044 105 HLKGEDVTSLNHKELMALEDALENGLTGIRDK 136 (218)
Q Consensus 105 ~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~R 136 (218)
+..|+||+.||++||..--..|+.-+.+++.-
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999998888888877777654
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.20 E-value=12 Score=26.24 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042044 114 LNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYV 161 (218)
Q Consensus 114 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~ 161 (218)
+|++.+..||..+..++..|..=++++ +.|+.+...|.++|..|...
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq~e~-eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQMEN-EELKEKNNELKEENEELKEE 47 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence 478899999999999999998776665 44555544444555554433
No 13
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.40 E-value=16 Score=27.80 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 116 HKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 116 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
++.+..||++|...+..+.+=|.++.+.+..+ ..|.-||..|+..+.+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN-~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEEN-TALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 46788999999999999988887776555444 3477788888887764
No 14
>PRK04098 sec-independent translocase; Provisional
Probab=78.78 E-value=1.5 Score=35.40 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=40.9
Q ss_pred ceeeeeeecCCCCccCCCchHHHHHHHHhhhcccc---cc-ccccchhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHH
Q 042044 42 KVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKK---LW-DAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHK 117 (218)
Q Consensus 42 ~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~---~~-~~~~e~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~ 117 (218)
=||||||.| .+++++.. .+-..+-.+++....- +. .-....+..+..+.++.++....++|. .++++
T Consensus 14 vVaLlvfGP-~KLP~~~r-~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~-------~~~~e 84 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAMV-DIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKK-------KLKFE 84 (158)
T ss_pred HHHHhhcCc-hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-------ccChH
Confidence 478899998 58877655 4666666666653220 00 011223444444454444444444432 25666
Q ss_pred HHHHHHHHHHH
Q 042044 118 ELMALEDALEN 128 (218)
Q Consensus 118 EL~~LE~~Le~ 128 (218)
+|..+-..+..
T Consensus 85 el~~~~~~~~~ 95 (158)
T PRK04098 85 ELDDLKITAEN 95 (158)
T ss_pred HHHHHhhhhhh
Confidence 66666444433
No 15
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.66 E-value=19 Score=27.17 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 116 HKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 116 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
++.+..||++|...+..|.+=|.++.+.+..+ ..|.-||..|+..+.+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN-~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEEN-ARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45678889999988888888776665444433 3366677777777654
No 16
>smart00338 BRLZ basic region leucin zipper.
Probab=77.58 E-value=11 Score=25.30 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=32.3
Q ss_pred HhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 128 NGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 128 ~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
.|-...|.||...+..|..++..|..+|..|...+..
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999988764
No 17
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.01 E-value=13 Score=24.95 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=31.4
Q ss_pred hhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 129 GLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 129 ~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
|-...|.||...++.|..++..|..+|..|...+..
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999999999999999999977754
No 18
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=76.28 E-value=3.6 Score=31.14 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=18.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 042044 143 RMRKNGKMLEEEHNYLKYVLR 163 (218)
Q Consensus 143 ~lkkk~~~l~een~~L~~~~~ 163 (218)
.++|+...|+|||+.|+.+++
T Consensus 76 rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999998874
No 19
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.29 E-value=14 Score=29.61 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=29.6
Q ss_pred hhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 042044 84 NLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMM 141 (218)
Q Consensus 84 ~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 141 (218)
.|..++..++.++..|+.++..+. ..+|.+||...-..|+.-+..+.+|-..+-
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433 556677777666666666666666654443
No 20
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.61 E-value=25 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=30.0
Q ss_pred HhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042044 128 NGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLR 163 (218)
Q Consensus 128 ~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~ 163 (218)
.+-.+.|.||..-+..+...+..|..+|..|...+.
T Consensus 14 ~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 14 EAARRSRQRKKQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888889999999999999999987764
No 21
>PHA03155 hypothetical protein; Provisional
Probab=67.34 E-value=35 Score=26.05 Aligned_cols=59 Identities=25% Similarity=0.275 Sum_probs=47.4
Q ss_pred ccccchhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHH
Q 042044 79 DAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQ 137 (218)
Q Consensus 79 ~~~~e~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK 137 (218)
+...|.|..++.+|+-||..|.+.+++=.+.+=..|+..+=..+-...-.+|...-.+|
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468899999999999999999998755555567898888888888888888776665
No 22
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=67.31 E-value=9.4 Score=33.76 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=32.8
Q ss_pred eeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch-HHHHHHHHhh
Q 042044 7 EIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP-MFEILEAYHK 71 (218)
Q Consensus 7 ~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~-~~~il~RY~~ 71 (218)
.+..|.|.|.|..+=|+ +||..|.+ +.| .|-++| |++|+|.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 46788999988877443 57888875 333 577878 9999998865
No 23
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=67.17 E-value=26 Score=26.90 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=42.9
Q ss_pred cchhhhHHHHhHhHhhhhhhhhhhccC----CCCCCCCHHHHHHHHHHHHHhhHhHHHHH
Q 042044 82 HENLYNEIDRIKKENDSMQIKLRHLKG----EDVTSLNHKELMALEDALENGLTGIRDKQ 137 (218)
Q Consensus 82 ~e~l~~el~kLkke~~~L~~~lR~l~G----edL~~Ls~~EL~~LE~~Le~~L~~VR~RK 137 (218)
.|.|..++.+|+-||..|.+.+++-.| .+-..|+..+=..+--..-.+|...-.+|
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999998777 56677899888888888888877766665
No 24
>PHA03162 hypothetical protein; Provisional
Probab=66.62 E-value=35 Score=26.70 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=44.9
Q ss_pred ccchhhhHHHHhHhHhhhhhhhhhhccCCC----CCCCCHHHHHHHHHHHHHhhHhHHHHH
Q 042044 81 KHENLYNEIDRIKKENDSMQIKLRHLKGED----VTSLNHKELMALEDALENGLTGIRDKQ 137 (218)
Q Consensus 81 ~~e~l~~el~kLkke~~~L~~~lR~l~Ged----L~~Ls~~EL~~LE~~Le~~L~~VR~RK 137 (218)
-.|.|..++.+|+-||..|.+.+++=.|.+ =..|+..+=.-+-...-.+|...-.+|
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998766654 234888888888777777777766665
No 25
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.49 E-value=36 Score=30.49 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=36.1
Q ss_pred hHhHhhhhhhhhhhcc--CCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 042044 92 IKKENDSMQIKLRHLK--GEDVTSLNHKELMALEDALENGLTGIRDKQSEMM 141 (218)
Q Consensus 92 Lkke~~~L~~~lR~l~--GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 141 (218)
+++....|+.++.++. -+++++++.++|..+-..|..-...|...+..+-
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555443 2478899999999999999988888888877765
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=65.28 E-value=37 Score=30.31 Aligned_cols=72 Identities=25% Similarity=0.363 Sum_probs=47.0
Q ss_pred HhHhhhhhhhhhhcc--CCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 93 KKENDSMQIKLRHLK--GEDVTSLNHKELMALEDALENGLTGIRDKQSEMM------ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 93 kke~~~L~~~lR~l~--GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll------~~lkkk~~~l~een~~L~~~~~~ 164 (218)
.+....|+.++..+. -.+++.++..+|..+-..|...-..|..+|..+- ..++.+...+.++-..+...+.+
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433 2458999999999999999999999998887775 34444455555555555555543
No 27
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=60.12 E-value=41 Score=28.59 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=38.8
Q ss_pred HhHhhhhhhhhhhccC-CCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHH
Q 042044 93 KKENDSMQIKLRHLKG-EDVTSLNHKELMALEDALENGLTGIRDKQSEMM------ERMRKNGKMLEEEHNYLKYVL 162 (218)
Q Consensus 93 kke~~~L~~~lR~l~G-edL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll------~~lkkk~~~l~een~~L~~~~ 162 (218)
+++++.++.....-.+ +.=++-..+|+..|+..++..-+.......+.. +.+.+....|-|+|..|+.++
T Consensus 133 ~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 133 MKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3355555554433221 111234556778888887777666665555543 344555566666666666444
No 28
>PRK01919 tatB sec-independent translocase; Provisional
Probab=58.37 E-value=19 Score=29.43 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=17.9
Q ss_pred eeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044 43 VSLIIFATSGKMHDYSSAPMFEILEAYHKQ 72 (218)
Q Consensus 43 v~liifs~~gk~~~~~s~~~~~il~RY~~~ 72 (218)
||||||.| .++++..- .+-..+-++++.
T Consensus 15 VALiV~GP-ekLP~~aR-tlGk~i~k~Rr~ 42 (169)
T PRK01919 15 VALVVIGP-ERLPRVAR-TAGALFGRAQRY 42 (169)
T ss_pred HHHheeCc-hHhHHHHH-HHHHHHHHHHHH
Confidence 78999998 56665543 355555555544
No 29
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=55.19 E-value=23 Score=29.87 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=37.4
Q ss_pred chHHHHH----HHHhhhcccceeeeeeecC---CCCccCCCchHHHHHHHHhhh
Q 042044 26 NGLIKKA----KEIAVLCDAKVSLIIFATS---GKMHDYSSAPMFEILEAYHKQ 72 (218)
Q Consensus 26 ~GL~KKA----~ELsvLCda~v~liifs~~---gk~~~~~s~~~~~il~RY~~~ 72 (218)
+-|+.|- .|+++=||-++.+++++|+ +....|...|++.|+..|...
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHH
Confidence 4466554 7999999999999999986 344557787899999999765
No 30
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=53.20 E-value=1.5e+02 Score=28.75 Aligned_cols=71 Identities=8% Similarity=0.092 Sum_probs=39.9
Q ss_pred HhhhcccceeeeeeecCCCCccCCCch----HHHHHHHHhhhccccccccccchhhhHHHHhHhHhhhhhhhhhh
Q 042044 35 IAVLCDAKVSLIIFATSGKMHDYSSAP----MFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRH 105 (218)
Q Consensus 35 LsvLCda~v~liifs~~gk~~~~~s~~----~~~il~RY~~~~~~~~~~~~~e~l~~el~kLkke~~~L~~~lR~ 105 (218)
..+.|+-.+|-+.+|..-..+.+...- |+.+|--++.....+........+...+.+|+.+++.++...+.
T Consensus 404 ~~t~v~~~la~~~~st~~~~~~~d~~~~~~km~~~i~~~~~~~~sd~~~~rer~l~a~t~kL~~E~e~~q~~~~~ 478 (588)
T KOG3612|consen 404 KLTQVSKMLADLHYSTQLGGVHADPTVVEDKMKDAIIDLQESTLSDYSGSRERSLVAATEKLRQEFEELQQTSRR 478 (588)
T ss_pred hhcccchhhhhcccccccCCcccchHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 345677677766666554433333311 55544444443333333333456778888888888887776554
No 31
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.72 E-value=57 Score=26.88 Aligned_cols=21 Identities=19% Similarity=-0.058 Sum_probs=14.6
Q ss_pred HHhhhcccceeeeeeecCCCC
Q 042044 34 EIAVLCDAKVSLIIFATSGKM 54 (218)
Q Consensus 34 ELsvLCda~v~liifs~~gk~ 54 (218)
-=+.-|=|+.+-|+|---||-
T Consensus 43 qk~Ld~La~~Gki~~K~YGKq 63 (201)
T KOG4603|consen 43 QKTLDQLAQQGKIKEKMYGKQ 63 (201)
T ss_pred HHHHHHHHHcCchhHHhccce
Confidence 334557788888888777764
No 32
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=51.60 E-value=83 Score=23.86 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 116 HKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 116 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
++.+..||++|-..++.+-.-|.++-+.+.. ...|.-||..|+..+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~~lvEE-N~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLGSLVEE-NTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhHHHHHHHhCC
Confidence 5678889999999988888877665433332 33466677777777654
No 33
>PRK01371 sec-independent translocase; Provisional
Probab=49.48 E-value=7.5 Score=30.68 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=30.9
Q ss_pred ceeeeeeecCCCCccCCCchHHHHHHHHhhhccccccccccchhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHH
Q 042044 42 KVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELM 120 (218)
Q Consensus 42 ~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~~~e~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~ 120 (218)
=|+||||.| .|++++.. .+-+.|-.+ |+.....+.+++.-+|.+++++.+.+|.
T Consensus 14 vVallvfGP-eKLP~~ar-~lg~~ir~~-----------------------R~~~~~ak~~i~~Elg~ef~d~d~r~l~ 67 (137)
T PRK01371 14 VLAVLVFGP-DKLPKAAR-DAGRTLRQL-----------------------REMANNARNDLRSELGPEFADLDLRDLN 67 (137)
T ss_pred HHHhheeCc-hHHHHHHH-HHHHHHHHH-----------------------HHHHHHHHHHHHHHhcchhcccchhhcC
Confidence 367888887 56665544 344444444 3333345555555568777777655543
No 34
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=47.89 E-value=2.4e+02 Score=26.54 Aligned_cols=43 Identities=9% Similarity=0.281 Sum_probs=30.1
Q ss_pred hchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044 25 RNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQ 72 (218)
Q Consensus 25 r~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~ 72 (218)
-++|+|+- .|.+- .-+-+++|+++|++..|.+ +.+||+.|-.+
T Consensus 284 ~~~L~k~~-~L~~~--~~~Nm~~~d~~g~~~~~~~--~~~Il~~f~~~ 326 (439)
T PHA02592 284 HEKIMKDF-GLIER--VSQNITVINENGKLKVYEN--AEDLIRDFVEI 326 (439)
T ss_pred HHHHHHhc-Cchhe--eeeeEEEEecCCeeeecCC--HHHHHHHHHHH
Confidence 34677653 23222 2367788999999999988 88999888554
No 35
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=47.58 E-value=1.1e+02 Score=25.24 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=41.3
Q ss_pred ccccccchhhhHHHHhHhHhhhhhhhhhhccC----CCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 042044 77 LWDAKHENLYNEIDRIKKENDSMQIKLRHLKG----EDVTSLNHKELMALEDALENGLTGIRDKQSEMME 142 (218)
Q Consensus 77 ~~~~~~e~l~~el~kLkke~~~L~~~lR~l~G----edL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~ 142 (218)
+.++...++.-++..++++++.|+.+|..+-- .+..++ -+++.+|+..|...++.--.++++++-
T Consensus 95 FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~-n~~i~slk~EL~d~iKe~e~~emeLyy 163 (181)
T PF04645_consen 95 FIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDL-NEEIESLKSELNDLIKEREIREMELYY 163 (181)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666654331 112222 246889999999888888888888883
No 36
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.83 E-value=1.2e+02 Score=22.53 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhc
Q 042044 62 MFEILEAYHKQS 73 (218)
Q Consensus 62 ~~~il~RY~~~~ 73 (218)
+..++..|+...
T Consensus 5 ~q~~~~~~q~~q 16 (110)
T TIGR02338 5 VQNQLAQLQQLQ 16 (110)
T ss_pred HHHHHHHHHHHH
Confidence 778888887753
No 37
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.96 E-value=1.9e+02 Score=25.47 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=44.5
Q ss_pred hhhHHHHhHhHhhhhhhhhhhccC--CCCCC---CCHHHHHHHHHHHHHhhHhHHHHHHHHH--HHHHHhHHHHHHHHHH
Q 042044 85 LYNEIDRIKKENDSMQIKLRHLKG--EDVTS---LNHKELMALEDALENGLTGIRDKQSEMM--ERMRKNGKMLEEEHNY 157 (218)
Q Consensus 85 l~~el~kLkke~~~L~~~lR~l~G--edL~~---Ls~~EL~~LE~~Le~~L~~VR~RK~~ll--~~lkkk~~~l~een~~ 157 (218)
|..++..++...+.+++-||.+.- ++|.- -++=-|.++|+.|..++.++-----++- +.+-..+.-|.+|-+.
T Consensus 96 Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEard 175 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARD 175 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 445566666666777777766532 23321 1333456677788877775543322322 2344445567777777
Q ss_pred HHHHHH
Q 042044 158 LKYVLR 163 (218)
Q Consensus 158 L~~~~~ 163 (218)
|+..|.
T Consensus 176 lrqela 181 (333)
T KOG1853|consen 176 LRQELA 181 (333)
T ss_pred HHHHHH
Confidence 776653
No 38
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.86 E-value=87 Score=24.96 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=32.2
Q ss_pred hhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHH
Q 042044 84 NLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQ 137 (218)
Q Consensus 84 ~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK 137 (218)
.|...+..|++++..|+..+..+.+ +-...|.+|...++.......+..+.||
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655554 4444666666666666666666666665
No 39
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=42.83 E-value=19 Score=28.44 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.0
Q ss_pred HhhhcccceeeeeeecCCCCccCCC
Q 042044 35 IAVLCDAKVSLIIFATSGKMHDYSS 59 (218)
Q Consensus 35 LsvLCda~v~liifs~~gk~~~~~s 59 (218)
++++|||||-+++-|.+.+...|++
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p 83 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPP 83 (148)
T ss_pred HHHhhccceeeeeecccCccccCCc
Confidence 6789999999999999998777766
No 40
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=41.91 E-value=46 Score=27.30 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhHhHHH
Q 042044 118 ELMALEDALENGLTGIRD 135 (218)
Q Consensus 118 EL~~LE~~Le~~L~~VR~ 135 (218)
||..||.+|+..+-.|++
T Consensus 160 ElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 889999999998888775
No 41
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=41.82 E-value=15 Score=31.68 Aligned_cols=40 Identities=20% Similarity=0.499 Sum_probs=29.9
Q ss_pred hhhhhhhchHHHHHHHHhhhcccceee---eeeecCCCCccCCC
Q 042044 19 VTYSKRRNGLIKKAKEIAVLCDAKVSL---IIFATSGKMHDYSS 59 (218)
Q Consensus 19 vTfsKRr~GL~KKA~ELsvLCda~v~l---iifs~~gk~~~~~s 59 (218)
.-|.+-+.|++||.. +..||..+-++ |.||+.++..-||.
T Consensus 118 ~~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSk 160 (269)
T PRK09822 118 SFYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCK 160 (269)
T ss_pred hhhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeee
Confidence 345566889999874 67788765444 56999999988877
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=41.33 E-value=61 Score=20.37 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~~~~ 164 (218)
+.|++=-..|.+||++|.+.+.+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~e 30 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQE 30 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778899999999988855
No 43
>PF14645 Chibby: Chibby family
Probab=40.89 E-value=38 Score=25.88 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=17.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYVLR 163 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~~~ 163 (218)
..++++.+.|+|||+.|+.+++
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888999999999987753
No 44
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=40.13 E-value=24 Score=32.54 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=26.2
Q ss_pred HHHhhhcccce--eeeeeecCCCCccCCCch------HHHHHHHHhhhc
Q 042044 33 KEIAVLCDAKV--SLIIFATSGKMHDYSSAP------MFEILEAYHKQS 73 (218)
Q Consensus 33 ~ELsvLCda~v--~liifs~~gk~~~~~s~~------~~~il~RY~~~~ 73 (218)
+-|||+||-+| |||-=.++|-- |.. | +++++.-|+..|
T Consensus 367 yalSV~~~~~V~HClIy~tatG~G--Fa~-pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFG--FAE-PYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred eEEEEEECCceeeeEEeecccccc--ccc-hhHHHHHHHHHHHHHhhhh
Confidence 46899999877 55444455543 333 2 899999998765
No 45
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=38.40 E-value=62 Score=24.58 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=8.8
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLK 159 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~ 159 (218)
+.|+.+++.|++.|..|.
T Consensus 70 e~Lk~qI~eL~er~~~Le 87 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALE 87 (123)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555444443
No 46
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=38.40 E-value=5.5 Score=30.22 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=26.3
Q ss_pred hhhhhhchH---------HHHHHHHhhhcccceeeeeeecCCC
Q 042044 20 TYSKRRNGL---------IKKAKEIAVLCDAKVSLIIFATSGK 53 (218)
Q Consensus 20 TfsKRr~GL---------~KKA~ELsvLCda~v~liifs~~gk 53 (218)
-||+=|+-| +-|..|+.+-||.|+-||++.+.|.
T Consensus 53 y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 53 YYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred EEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 356666644 4456899999999999999999664
No 47
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=38.04 E-value=65 Score=28.24 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHH------------------------HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 116 HKELMALEDALENGLTGIRDKQSEMM------------------------ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 116 ~~EL~~LE~~Le~~L~~VR~RK~~ll------------------------~~lkkk~~~l~een~~L~~~~~~ 164 (218)
.-+--.-+.+|+.-+...++.|.++- +.+..+....-|.|..|...|.+
T Consensus 86 ~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 86 RVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444556666666777776665552 23344455566677777777665
No 48
>PTZ00046 rifin; Provisional
Probab=37.65 E-value=24 Score=32.24 Aligned_cols=32 Identities=22% Similarity=0.799 Sum_probs=24.0
Q ss_pred hhhcccceeeeeeecCCCCccCCCch-HHHHHHHHhhhcccc
Q 042044 36 AVLCDAKVSLIIFATSGKMHDYSSAP-MFEILEAYHKQSGKK 76 (218)
Q Consensus 36 svLCda~v~liifs~~gk~~~~~s~~-~~~il~RY~~~~~~~ 76 (218)
-+||.+|. |+| -|-++| |++|.+.|.+.+.-+
T Consensus 39 R~LcECeL----Y~p-----nYDNDPeMK~Vme~F~rqTsQR 71 (358)
T PTZ00046 39 RLLCECEL----YSS-----NYDNDPEMKSVMENFDRQTSQR 71 (358)
T ss_pred hhhhhhhc----CCC-----CCCCcHHHHHHHHHHhHHHHHH
Confidence 37899985 555 377778 999999998766543
No 49
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.04 E-value=2.4e+02 Score=27.86 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhHhHH
Q 042044 117 KELMALEDALENGLTGIR 134 (218)
Q Consensus 117 ~EL~~LE~~Le~~L~~VR 134 (218)
.++..|+..|+..-..++
T Consensus 450 ~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 450 REIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566667777766666555
No 50
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=35.80 E-value=3.1e+02 Score=24.15 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHH-HH--HHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 113 SLNHKELMALED-AL--ENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 113 ~Ls~~EL~~LE~-~L--e~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
++...|+..+|+ .+ -.+..+.|.||.+-|..|+++++.+.-.|..|...+..
T Consensus 198 d~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~ 252 (279)
T KOG0837|consen 198 DMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK 252 (279)
T ss_pred cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 445667777776 22 34567788888888999999999999899888877755
No 51
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=35.47 E-value=4 Score=28.91 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=27.4
Q ss_pred chhh-hhhhhchHHHH---------HHHHhhhcccceeeeeeecCCC
Q 042044 17 RQVT-YSKRRNGLIKK---------AKEIAVLCDAKVSLIIFATSGK 53 (218)
Q Consensus 17 RqvT-fsKRr~GL~KK---------A~ELsvLCda~v~liifs~~gk 53 (218)
+.+| ||+-|++|-.| +.|+.+-||.|.-|+.+-|.|.
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 3344 58888777555 5789999999999999999887
No 52
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=34.46 E-value=2.5e+02 Score=23.47 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=8.9
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 042044 144 MRKNGKMLEEEHNYLKYV 161 (218)
Q Consensus 144 lkkk~~~l~een~~L~~~ 161 (218)
||.-...|+++|..|+..
T Consensus 60 LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 60 LKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344455666655543
No 53
>PTZ00370 STEVOR; Provisional
Probab=33.65 E-value=63 Score=28.69 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=28.1
Q ss_pred eEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch-HHHHHHHHhh
Q 042044 8 IKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP-MFEILEAYHK 71 (218)
Q Consensus 8 ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~-~~~il~RY~~ 71 (218)
+..|.|.+.|. |-+-| +||..|. ++| .|-++| |++|++.|..
T Consensus 26 ~~li~n~t~~~-t~~sR------------~L~Ecel----~~p-----~YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 26 VSLIQNNTQRT-TIKSR------------LLAQTQN----HNP-----HYHNDPELKEIIDKMNE 68 (296)
T ss_pred cccccCCCccc-cccee------------ehhhhhc----CCC-----CCCCcHHHHHHHHHHhH
Confidence 45677777765 32222 5787774 444 577778 9999998865
No 54
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=33.22 E-value=22 Score=33.01 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=48.0
Q ss_pred eEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch-HHHHHHHHhhh
Q 042044 8 IKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP-MFEILEAYHKQ 72 (218)
Q Consensus 8 ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~-~~~il~RY~~~ 72 (218)
|+++-+...-..||.+|+.| ||+++||+.+-..||....-...|++.. +.+.-+-|++.
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~~ 77 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQKF 77 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhhh
Confidence 77888888888899999999 9999999999999988877777787744 55555656555
No 55
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.88 E-value=2.9e+02 Score=23.06 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=8.6
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 042044 143 RMRKNGKMLEEEHNYLKYV 161 (218)
Q Consensus 143 ~lkkk~~~l~een~~L~~~ 161 (218)
.|+.-.+.|+|+|+.|..+
T Consensus 71 dLk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 71 DLKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 56
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.87 E-value=3.9e+02 Score=24.48 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=25.0
Q ss_pred HHHHHhhHhHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 124 DALENGLTGIRDKQSEMM---ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 124 ~~Le~~L~~VR~RK~~ll---~~lkkk~~~l~een~~L~~~~~~ 164 (218)
++||..+...++++.++= +.+....+..+||+..|.+.+.+
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 455555666666655442 56666666667777777666665
No 57
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=32.71 E-value=36 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=10.6
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLK 159 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~ 159 (218)
+.||.++..|++.|..|.
T Consensus 17 evLK~~I~eL~~~n~~Le 34 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLE 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655554
No 58
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=32.65 E-value=4.1e+02 Score=24.64 Aligned_cols=63 Identities=30% Similarity=0.435 Sum_probs=36.1
Q ss_pred cccceeEEeCCCccchhhh---hhh-------hchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044 3 RGKIEIKRIENLSNRQVTY---SKR-------RNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQ 72 (218)
Q Consensus 3 R~Ki~ik~Ien~~~RqvTf---sKR-------r~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~ 72 (218)
.|+|+|.-|.|.+.+.|.| -|| .++|+|+-. |. +-.-+..+++.+.| +.|.+ +++||+.|-..
T Consensus 243 ~~~i~I~d~~D~Sd~~v~ivI~lk~~~~~~~~~~~L~k~t~-Lq--~s~~~n~~~l~~~~--p~~~~--~~eIL~~f~~~ 315 (426)
T PF00521_consen 243 DKKIKISDYRDESDRGVRIVIELKRGADPEKILEGLYKKTK-LQ--SSISTNNMVLFDNG--PKYDS--LKEILKEFYEF 315 (426)
T ss_dssp TTSSTEEEEEE-BBTBS-EEEEESTTSHHHHHHHHHHHHST-TE--EEEEEETEEEETTE--EEESS--HHHHHHHHHHH
T ss_pred cCcchhhHHHhcCCCceeEEEEecCCccHHHHHHHHHHHhh-hh--ccccchheEEecCc--ceeCC--HHHHHHHHHHH
Confidence 4677777887778887776 333 346666532 22 22223334444445 67777 89999888654
No 59
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=32.50 E-value=99 Score=22.72 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=39.3
Q ss_pred HHHHhhhcccceeeee-------eecC--C-CCccCCCch---HHHHHHHHhhhccccccc-cccchhhhHHHHhHhHhh
Q 042044 32 AKEIAVLCDAKVSLII-------FATS--G-KMHDYSSAP---MFEILEAYHKQSGKKLWD-AKHENLYNEIDRIKKEND 97 (218)
Q Consensus 32 A~ELsvLCda~v~lii-------fs~~--g-k~~~~~s~~---~~~il~RY~~~~~~~~~~-~~~e~l~~el~kLkke~~ 97 (218)
..|||..|+++...|. +.|. | .-+.|.+.. +..+. |...--+.+..- .-.-.|-+++..|+.++.
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~~~~~~~F~~~~l~r~~~a~-rL~~dl~in~~gialvl~LLd~i~~Lr~el~ 88 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDDHAAIVVQRAV-RLRHELALDWPGIAVALTLLDEIAHLKQENR 88 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCCCcccceECHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999998766532 2232 2 233455522 22222 222222222110 112246677888888888
Q ss_pred hhhhhhhhcc
Q 042044 98 SMQIKLRHLK 107 (218)
Q Consensus 98 ~L~~~lR~l~ 107 (218)
.|++.++.++
T Consensus 89 ~L~~~l~~~~ 98 (101)
T PRK10265 89 LLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHh
Confidence 8888776554
No 60
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=32.46 E-value=27 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHhhhcccceeeeeeecCCCCccCCC
Q 042044 30 KKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59 (218)
Q Consensus 30 KKA~ELsvLCda~v~liifs~~gk~~~~~s 59 (218)
.|-.||--+-+|=+| =.|||+||+.+|-+
T Consensus 3 ekLdeLlqi~Gv~AA-Gefs~DGkLv~Ykg 31 (109)
T COG4831 3 EKLDELLQIKGVMAA-GEFSPDGKLVEYKG 31 (109)
T ss_pred hhHHHHhCccceeEe-ceeCCCCceEEeeC
Confidence 356677777776444 58999999999987
No 61
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=31.70 E-value=68 Score=30.33 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHhhHhHHHH-------------HHHHH--------------HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 113 SLNHKELMALEDALENGLTGIRDK-------------QSEMM--------------ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 113 ~Ls~~EL~~LE~~Le~~L~~VR~R-------------K~~ll--------------~~lkkk~~~l~een~~L~~~~~~ 164 (218)
+.++.+..-|-+.=|..|++||.+ |.+.+ ..|++|+..|+..|..|..+|..
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 445555555556666677777644 23333 36888888899999888888865
No 62
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=31.44 E-value=2e+02 Score=25.23 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=33.6
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 042044 123 EDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQ 171 (218)
Q Consensus 123 E~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~~~~~~~~ 171 (218)
+.........|..+|.++++.+.+|...|+++...|...+....+-+.+
T Consensus 77 ~~~~~e~~~~l~~Kk~eLi~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ 125 (264)
T PF08687_consen 77 SDSDDENDNDLNAKKVELIESLSKKLEVLQEEQEALQEEIQANEALGAE 125 (264)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677889999999999999999999999999888765554443
No 63
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.99 E-value=36 Score=21.50 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=17.5
Q ss_pred cccchhhhHHHHhHhHhhhhhhhhhhc
Q 042044 80 AKHENLYNEIDRIKKENDSMQIKLRHL 106 (218)
Q Consensus 80 ~~~e~l~~el~kLkke~~~L~~~lR~l 106 (218)
..++.|..+.+.|.++++.|+.++..+
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777666543
No 64
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.48 E-value=3e+02 Score=23.03 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=12.6
Q ss_pred hhhHHHHhHhHhhhhhhhhhhc
Q 042044 85 LYNEIDRIKKENDSMQIKLRHL 106 (218)
Q Consensus 85 l~~el~kLkke~~~L~~~lR~l 106 (218)
+...+..++.+++.++.++..+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666555543
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.13 E-value=4.4e+02 Score=25.16 Aligned_cols=60 Identities=12% Similarity=0.348 Sum_probs=31.8
Q ss_pred hhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHH
Q 042044 84 NLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLE 152 (218)
Q Consensus 84 ~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~ 152 (218)
.+..++..+..+|+.|..+...+. .....+.++++.++...|..-.+-.+.++.....++
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~ 129 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQ 129 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666554332 223456677777777766543333333433333333
No 66
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=29.50 E-value=33 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.7
Q ss_pred HHHHhhhcccceeeeeeecCCCCccCCC
Q 042044 32 AKEIAVLCDAKVSLIIFATSGKMHDYSS 59 (218)
Q Consensus 32 A~ELsvLCda~v~liifs~~gk~~~~~s 59 (218)
-.+|..|-+|- |...||++|++.+|-.
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeec
Confidence 45777788885 5579999999999876
No 67
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.78 E-value=2.2e+02 Score=20.32 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHH
Q 042044 114 LNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEE 154 (218)
Q Consensus 114 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~ee 154 (218)
+|++=|..||..+..++..|--=++++ +.||.+...|.++
T Consensus 1 MS~EvleqLE~KIqqAvdtI~LLqmEi-eELKekn~~L~~e 40 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTITLLQMEI-EELKEKNNSLSQE 40 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 478889999999999999887665554 3444444444443
No 68
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=28.53 E-value=46 Score=24.81 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=8.9
Q ss_pred ccccccchhhhHHHHh
Q 042044 77 LWDAKHENLYNEIDRI 92 (218)
Q Consensus 77 ~~~~~~e~l~~el~kL 92 (218)
.|+..|+-|..|+..+
T Consensus 9 ~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 9 TWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3555555555555555
No 69
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.11 E-value=3.4e+02 Score=22.28 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=6.9
Q ss_pred HHhHHHHHHHHHHHHH
Q 042044 145 RKNGKMLEEEHNYLKY 160 (218)
Q Consensus 145 kkk~~~l~een~~L~~ 160 (218)
+.++..|...|..|..
T Consensus 169 ~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 169 QEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 70
>PRK00708 sec-independent translocase; Provisional
Probab=27.71 E-value=35 Score=28.86 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=18.2
Q ss_pred HHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044 34 EIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQ 72 (218)
Q Consensus 34 ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~ 72 (218)
||-|+. =|+||||.| .+|++..- .+-..+-++++.
T Consensus 8 ELlvI~--vVaLvV~GP-krLP~~~R-~lGk~v~k~R~~ 42 (209)
T PRK00708 8 ELLVIA--IVLIVVVGP-KDLPPMLR-AFGKMTARMRKM 42 (209)
T ss_pred HHHHHH--HHHHhhcCc-hHHHHHHH-HHHHHHHHHHHH
Confidence 444443 367888888 45544322 244455555443
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=27.52 E-value=5.8e+02 Score=24.82 Aligned_cols=27 Identities=7% Similarity=0.071 Sum_probs=13.4
Q ss_pred HHHHhhhcccceeeeeeec-CC------CCccCCC
Q 042044 32 AKEIAVLCDAKVSLIIFAT-SG------KMHDYSS 59 (218)
Q Consensus 32 A~ELsvLCda~v~liifs~-~g------k~~~~~s 59 (218)
|+.|.-.- .+--..+|.+ .| .+|.|+.
T Consensus 79 ayyLPk~~-~e~YqfcYv~~~g~V~G~S~pFqf~~ 112 (546)
T PF07888_consen 79 AYYLPKDD-DEFYQFCYVDQKGEVRGASTPFQFRA 112 (546)
T ss_pred cccCCCCC-CCeEEEEEECCCccEEEecCCcccCC
Confidence 56666532 2333344443 33 4677775
No 72
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.22 E-value=2.9e+02 Score=21.13 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=35.6
Q ss_pred HHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHH
Q 042044 88 EIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMM---ERMRKNGKMLEEEHNYLKYVLR 163 (218)
Q Consensus 88 el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll---~~lkkk~~~l~een~~L~~~~~ 163 (218)
.+..++.+...++..+..+. .+.......|+.+-..--.+|..+- ..++++...|...|+.|..+|.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~---------~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELK---------AEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555554443321 2333333333333333344444443 5677888888888888876653
No 73
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.08 E-value=30 Score=29.48 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.6
Q ss_pred cceeeeeeecCCCCcc
Q 042044 41 AKVSLIIFATSGKMHD 56 (218)
Q Consensus 41 a~v~liifs~~gk~~~ 56 (218)
-|-||-||||+|.++.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 4678999999999875
No 74
>PRK00182 tatB sec-independent translocase; Provisional
Probab=26.88 E-value=16 Score=29.59 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044 34 EIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQ 72 (218)
Q Consensus 34 ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~ 72 (218)
||-|++ =|+||||.| .|++++.. .+...+-.+++.
T Consensus 9 EllvIl--vIaLlVfGP-erLP~~~r-~lg~~ir~~R~~ 43 (160)
T PRK00182 9 EILLLL--IVGLIVIGP-ERLPRLIE-DVRAALLAARTA 43 (160)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHHH-HHHHHHHHHHHH
Confidence 444443 368899988 67777654 455566666554
No 75
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=26.73 E-value=3.5e+02 Score=21.93 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042044 115 NHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVL 162 (218)
Q Consensus 115 s~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~ 162 (218)
+..||..|-++++.+..-||++=...|..+.+..+.|+++-+.+....
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~ 75 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEEA 75 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999977777777777788888777766554
No 76
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.44 E-value=2.9e+02 Score=26.11 Aligned_cols=64 Identities=27% Similarity=0.304 Sum_probs=38.4
Q ss_pred hhhhhhhhccCC-CCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 98 SMQIKLRHLKGE-DVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 98 ~L~~~lR~l~Ge-dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
++.+.|+.+..+ ++.-+++++|+.---+|++.|..= ..-+...|=|+...|+.+.++|..++.+
T Consensus 162 Klm~ki~Klen~t~~kq~~leQLRre~V~lentlEQE---qEalvN~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 162 KLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQE---QEALVNSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444555555544 456677788776666666655422 1222355667777777777777777654
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.40 E-value=3.9e+02 Score=22.39 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=8.7
Q ss_pred hhhhHHHHhHhHhhhhhhh
Q 042044 84 NLYNEIDRIKKENDSMQIK 102 (218)
Q Consensus 84 ~l~~el~kLkke~~~L~~~ 102 (218)
.++.++..++.+.+.+..+
T Consensus 97 ~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 4444444444444444433
No 78
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.33 E-value=3.4e+02 Score=21.68 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=42.8
Q ss_pred HHHhHhHhhhhhhhhhh--ccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHH-------------HHHHHhHHHHHH
Q 042044 89 IDRIKKENDSMQIKLRH--LKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMM-------------ERMRKNGKMLEE 153 (218)
Q Consensus 89 l~kLkke~~~L~~~lR~--l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll-------------~~lkkk~~~l~e 153 (218)
...++..+.+++..+++ -+|++| .+-|-.+|.-.-..-..+|.+|-.++. ...+.|...+..
T Consensus 15 ~~~lk~~l~k~~~ql~~ke~lge~L---~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~ 91 (177)
T PF13870_consen 15 NITLKHQLAKLEEQLRQKEELGEGL---HLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSE 91 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555443 346555 444444444444455556655554443 567888888888
Q ss_pred HHHHHHHHHHH
Q 042044 154 EHNYLKYVLRQ 164 (218)
Q Consensus 154 en~~L~~~~~~ 164 (218)
++..+...+..
T Consensus 92 ~~~~l~~~l~~ 102 (177)
T PF13870_consen 92 ELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHH
Confidence 88888877765
No 79
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=26.29 E-value=35 Score=27.40 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=18.5
Q ss_pred hhcccceeeeeeecCCCC-ccCCCch
Q 042044 37 VLCDAKVSLIIFATSGKM-HDYSSAP 61 (218)
Q Consensus 37 vLCda~v~liifs~~gk~-~~~~s~~ 61 (218)
.-|++.|-+++||+.-+. .-|.+.+
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP~D 134 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIPND 134 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEEST
T ss_pred CCCceEEEEEEEcCCCceEEEEcCCC
Confidence 569999999999998874 4466644
No 80
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.07 E-value=5.3e+02 Score=26.34 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~~~~ 164 (218)
+.|-|-...+.+||+.|...+.+
T Consensus 458 eellk~~e~q~~Enk~~~~~~~e 480 (861)
T PF15254_consen 458 EELLKVIENQKEENKRLRKMFQE 480 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777777766544
No 81
>PF06751 EutB: Ethanolamine ammonia lyase large subunit (EutB); InterPro: IPR010628 This family consists of several bacterial ethanolamine ammonia lyase large subunit (EutB) proteins. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia. The enzyme is a heterodimer composed of subunits of Mr approximately 55,000 (EutB) and 35,000 (EutC) [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABQ_C 3ABS_C 3AO0_A 3ABR_A 3ABO_C 3ANY_A 2QEZ_B.
Probab=25.97 E-value=22 Score=33.05 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=5.2
Q ss_pred CcccccCCCCC
Q 042044 202 PLAFRVQPIQP 212 (218)
Q Consensus 202 ~~~f~lqp~qp 212 (218)
.++.|+||+||
T Consensus 146 ~ls~RlQPNhP 156 (444)
T PF06751_consen 146 RLSSRLQPNHP 156 (444)
T ss_dssp B-EEEE----T
T ss_pred eeeeecCCCCC
Confidence 46899999999
No 82
>PRK15067 ethanolamine ammonia lyase large subunit; Provisional
Probab=25.90 E-value=30 Score=32.47 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=13.0
Q ss_pred CCCCccCCCchHHHHHHHH
Q 042044 51 SGKMHDYSSAPMFEILEAY 69 (218)
Q Consensus 51 ~gk~~~~~s~~~~~il~RY 69 (218)
.|..|.|.+ +++++.+=
T Consensus 8 ~~~~y~F~~--lk~vlakA 24 (461)
T PRK15067 8 GGRVYQFKD--LKEVLAKA 24 (461)
T ss_pred cCceEEeCc--HHHHHhhc
Confidence 378888888 88888754
No 83
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=25.85 E-value=1.3e+02 Score=26.04 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 042044 144 MRKNGKMLEEEHNYLKYVL 162 (218)
Q Consensus 144 lkkk~~~l~een~~L~~~~ 162 (218)
|+.+.+.|--+|..|...+
T Consensus 116 Lr~~n~~L~~~n~el~~~l 134 (292)
T KOG4005|consen 116 LRAINESLLAKNHELDSEL 134 (292)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 3444444444444444443
No 84
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.38 E-value=5.2e+02 Score=24.89 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042044 89 IDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVL 162 (218)
Q Consensus 89 l~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~ 162 (218)
+..|+...+.|+..++. .+++.-.++...+=-.+|..-|.+|...+..++..........++.-..|...+
T Consensus 346 i~~L~~~~d~L~~q~~k---q~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~ 416 (622)
T COG5185 346 IKALQSNIDELHKQLRK---QGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTL 416 (622)
T ss_pred HHHHHhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444444444443 567666777777777788889999998888888544444444444444444333
No 85
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.22 E-value=5.1e+02 Score=23.32 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHH-----------HHHHHhHHHHHH
Q 042044 121 ALEDALENGLTGIRDKQSEMM-----------ERMRKNGKMLEE 153 (218)
Q Consensus 121 ~LE~~Le~~L~~VR~RK~~ll-----------~~lkkk~~~l~e 153 (218)
.|-..|...|..+|.-|.++= ..|.++...|+-
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344566777777777776542 356666666653
No 86
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=24.76 E-value=69 Score=22.89 Aligned_cols=31 Identities=10% Similarity=0.222 Sum_probs=23.2
Q ss_pred ceeeeeeecCC--CCccCCCch-HHHHHHHHhhh
Q 042044 42 KVSLIIFATSG--KMHDYSSAP-MFEILEAYHKQ 72 (218)
Q Consensus 42 ~v~liifs~~g--k~~~~~s~~-~~~il~RY~~~ 72 (218)
.+-++|+|.+| |++.+.++. ...++.+|+..
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46789999998 566555533 99999999764
No 87
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.73 E-value=3.1e+02 Score=20.79 Aligned_cols=11 Identities=9% Similarity=0.063 Sum_probs=7.3
Q ss_pred HHHHHHHHhhh
Q 042044 62 MFEILEAYHKQ 72 (218)
Q Consensus 62 ~~~il~RY~~~ 72 (218)
+...+..|+..
T Consensus 9 ~q~~~~~~q~l 19 (121)
T PRK09343 9 VQAQLAQLQQL 19 (121)
T ss_pred HHHHHHHHHHH
Confidence 66677777664
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.69 E-value=3.9e+02 Score=21.79 Aligned_cols=23 Identities=26% Similarity=0.188 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~~~~ 164 (218)
..+..+.+.|++||..|...+..
T Consensus 161 ~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999998866643
No 89
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=24.61 E-value=1.3e+02 Score=26.97 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=30.6
Q ss_pred HhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042044 128 NGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLR 163 (218)
Q Consensus 128 ~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~ 163 (218)
.+-+..|.+|.+.++=|..++..|+.+|+.|-.+|.
T Consensus 301 EAARECRRKKKEYVKCLENRVAVLENQNKaLIEELK 336 (348)
T KOG3584|consen 301 EAARECRRKKKEYVKCLENRVAVLENQNKALIEELK 336 (348)
T ss_pred HHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHH
Confidence 456678888999999999999999999999987774
No 90
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=24.32 E-value=55 Score=25.59 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=22.7
Q ss_pred ccceeeeeeecCCCCccCCCch--HHHHHHHHhhh
Q 042044 40 DAKVSLIIFATSGKMHDYSSAP--MFEILEAYHKQ 72 (218)
Q Consensus 40 da~v~liifs~~gk~~~~~s~~--~~~il~RY~~~ 72 (218)
...++-||+ ++|++-+|.. | +.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~-pv~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKR-PVTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCC-CcCHHHHHHHCCCC
Confidence 444555555 7899999966 7 99999988554
No 91
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=24.13 E-value=2.2e+02 Score=20.35 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=45.5
Q ss_pred hHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042044 92 IKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTG---IRDKQSEMMERMRKNGKMLEEEHNYLKYVLR 163 (218)
Q Consensus 92 Lkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~---VR~RK~~ll~~lkkk~~~l~een~~L~~~~~ 163 (218)
|+...+.|+.++.+. ..+++-+-..|..|-+.++..|.. .-..-..+.+.+..-+...+.+|..|..-+.
T Consensus 2 L~~~L~~L~~eL~~~--~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr 74 (85)
T PF14357_consen 2 LQELLEKLHQELEQN--PPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEASHPKLAGILR 74 (85)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 456666677776642 457777888888888888888876 1122233346666666667777777665553
No 92
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.11 E-value=3.7e+02 Score=26.92 Aligned_cols=89 Identities=27% Similarity=0.384 Sum_probs=0.0
Q ss_pred hhhHHHHhHhHhhhhhhhh------hhccCCCCCCC--CHHHHHHHHHHHHHhhHhHHHHHH------------------
Q 042044 85 LYNEIDRIKKENDSMQIKL------RHLKGEDVTSL--NHKELMALEDALENGLTGIRDKQS------------------ 138 (218)
Q Consensus 85 l~~el~kLkke~~~L~~~l------R~l~GedL~~L--s~~EL~~LE~~Le~~L~~VR~RK~------------------ 138 (218)
+..++..++.+|+.|+..+ |+-.=..+..| .+.|.+..-..||.-|..-|.+|.
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~ 537 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ 537 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 042044 139 EMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMA 176 (218)
Q Consensus 139 ~ll~~lkkk~~~l~een~~L~~~~~~~~~~~~~~~~~~ 176 (218)
+.=+.++.+.+.|+.|-+.|+..+.. ...+...++
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~---kee~~~~~e 572 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQ---KEEQIRELE 572 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
No 93
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=23.61 E-value=15 Score=27.54 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=34.4
Q ss_pred cceeEEe-CCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044 5 KIEIKRI-ENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQ 72 (218)
Q Consensus 5 Ki~ik~I-en~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~ 72 (218)
+|++|-+ +|.+|=.|+|.||-.|+- =+=+...|..-.|.=...+.++..|...
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Gir---------------qfEi~n~G~~RI~gYk~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIR---------------QFEIRNKGEFRIFGYKMSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEE---------------EEEEETTSEEEEEEES--HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCcee---------------EEEEecCCcEEEEEEcCCHHHHHHHHhc
Confidence 5778877 788999999999999983 2344577754444332267777777554
No 94
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=23.17 E-value=4e+02 Score=21.40 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 042044 143 RMRKNGKMLEEEHNYLKYVL 162 (218)
Q Consensus 143 ~lkkk~~~l~een~~L~~~~ 162 (218)
.|..++..|+++|+.|...+
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777776444
No 95
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=23.15 E-value=2.8e+02 Score=19.54 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=35.8
Q ss_pred hhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHH
Q 042044 84 NLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEM 140 (218)
Q Consensus 84 ~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~l 140 (218)
.|+.|+..++-+...|+...+++. .+++...-..|+..|+..+..+-.+=.||
T Consensus 21 ~LqDE~~hm~~e~~~L~~~~~~~d----~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 21 ALQDEFGHMKMEHQELQDEYKQMD----PSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----cccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666544 35677778888888888888776665554
No 96
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.03 E-value=3.4e+02 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHH
Q 042044 116 HKELMALEDALENGLTGIRDKQS 138 (218)
Q Consensus 116 ~~EL~~LE~~Le~~L~~VR~RK~ 138 (218)
-.++..|+..++..-..|++|+.
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777763
No 97
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.73 E-value=5.1e+02 Score=24.54 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 042044 112 TSLNHKELMALEDALENGLTGIRDKQSEMM 141 (218)
Q Consensus 112 ~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 141 (218)
+..++.++..+-..+...+..++.+...+-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888999998888888888887776544
No 98
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=22.64 E-value=91 Score=24.41 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=29.7
Q ss_pred chhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHH
Q 042044 83 ENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118 (218)
Q Consensus 83 e~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~E 118 (218)
..|+.++++.++.+..+...|+.+.|-|.++.-.-+
T Consensus 6 ~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~q 41 (134)
T PF04697_consen 6 RTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPGQ 41 (134)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCccc
Confidence 357888999999999999999999999977665443
No 99
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=22.54 E-value=6.6e+02 Score=23.68 Aligned_cols=62 Identities=27% Similarity=0.491 Sum_probs=37.6
Q ss_pred ccc-eeEEeCCCccch-hhh---hhhh-------chHHHHHH-HHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHh
Q 042044 4 GKI-EIKRIENLSNRQ-VTY---SKRR-------NGLIKKAK-EIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYH 70 (218)
Q Consensus 4 ~Ki-~ik~Ien~~~Rq-vTf---sKRr-------~GL~KKA~-ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~ 70 (218)
+|+ .|.-|.+.++|. |.| -||. ++|+|+.. +-|+-| -+++|.++|++..| + +++||+.|-
T Consensus 253 ~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~-~--l~~iL~~f~ 325 (445)
T cd00187 253 KKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL-N--LKEILQEFL 325 (445)
T ss_pred CCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe-C--HHHHHHHHH
Confidence 344 466677776663 333 1332 35664432 222223 67788889999989 6 788888886
Q ss_pred hh
Q 042044 71 KQ 72 (218)
Q Consensus 71 ~~ 72 (218)
.+
T Consensus 326 ~~ 327 (445)
T cd00187 326 DH 327 (445)
T ss_pred HH
Confidence 54
No 100
>PRK11637 AmiB activator; Provisional
Probab=22.46 E-value=6.1e+02 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHH
Q 042044 116 HKELMALEDALENGLTGIRDKQSEM 140 (218)
Q Consensus 116 ~~EL~~LE~~Le~~L~~VR~RK~~l 140 (218)
..+|..++.+|...-..|.....++
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555554333
No 101
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=22.17 E-value=2.2e+02 Score=24.80 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 117 KELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 117 ~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
++-......=..++++-|.+-.+....+..++..|+.||..|+..+.+
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444456777777776677788999999999999999988865
No 102
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.14 E-value=5.9e+02 Score=26.87 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=11.9
Q ss_pred HHHhhhcccceeeeeeecCCC
Q 042044 33 KEIAVLCDAKVSLIIFATSGK 53 (218)
Q Consensus 33 ~ELsvLCda~v~liifs~~gk 53 (218)
..+-++||..+.+-- |++|+
T Consensus 139 e~~le~vGl~~~~~~-s~s~~ 158 (1195)
T KOG4643|consen 139 EKLLELVGLEKKYRE-SRSGK 158 (1195)
T ss_pred HHHHHHhcccceeec-cccCC
Confidence 344478888877654 44443
No 103
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=22.10 E-value=46 Score=26.04 Aligned_cols=19 Identities=26% Similarity=0.618 Sum_probs=10.3
Q ss_pred hhhHHHHhHhHhhhhhhhh
Q 042044 85 LYNEIDRIKKENDSMQIKL 103 (218)
Q Consensus 85 l~~el~kLkke~~~L~~~l 103 (218)
|.+++++|+.++..+..++
T Consensus 86 L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 104
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=21.58 E-value=49 Score=27.76 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred cccceeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044 39 CDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQ 72 (218)
Q Consensus 39 Cda~v~liifs~~gk~~~~~s~~~~~il~RY~~~ 72 (218)
-||++|++|||.++.- | .+.+++=|.+.
T Consensus 91 rgaqa~vLVFSTTDr~----S--Fea~~~w~~kv 118 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY----S--FEATLEWYNKV 118 (246)
T ss_pred ccccceEEEEecccHH----H--HHHHHHHHHHH
Confidence 5899999999998863 1 45556655443
No 105
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.54 E-value=1.2e+02 Score=27.13 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~~~~ 164 (218)
+.|++|.+.|++||..|+....+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 106
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.04 E-value=4e+02 Score=20.60 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=10.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 042044 143 RMRKNGKMLEEEHNYLKYVLR 163 (218)
Q Consensus 143 ~lkkk~~~l~een~~L~~~~~ 163 (218)
.+....+...++...+..++.
T Consensus 105 ~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555554443
No 107
>PLN03128 DNA topoisomerase 2; Provisional
Probab=20.97 E-value=83 Score=33.25 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=25.3
Q ss_pred chhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCc
Q 042044 17 RQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMH 55 (218)
Q Consensus 17 RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~ 55 (218)
|.-.|.||+.-+++|+.+-.-...+.+.+|.--.+|.+.
T Consensus 988 R~~~y~kRk~~~l~~~~~~~~~l~~k~~fi~~v~~~~~~ 1026 (1135)
T PLN03128 988 RLDLYVKRKEVLLENLEYELKKLDNKARFILAVVKGEIV 1026 (1135)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHHHhheecceEE
Confidence 666789999999999975444445555554444444443
No 108
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=20.50 E-value=13 Score=24.28 Aligned_cols=29 Identities=17% Similarity=0.433 Sum_probs=20.1
Q ss_pred eeeeeeecCCCCccCCCchHHHHHHHHhhhc
Q 042044 43 VSLIIFATSGKMHDYSSAPMFEILEAYHKQS 73 (218)
Q Consensus 43 v~liifs~~gk~~~~~s~~~~~il~RY~~~~ 73 (218)
|++|+|.| +|++++.. .+-+.+..|++..
T Consensus 12 valllfGp-~kLP~~~r-~lG~~ir~fk~~~ 40 (53)
T PF02416_consen 12 VALLLFGP-KKLPELAR-SLGKAIREFKKAI 40 (53)
T ss_dssp HHHHHS-T-TTHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHhCc-hHHHHHHH-HHHHHHHHHHHHH
Confidence 67788988 77877765 5666677776654
No 109
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=20.48 E-value=88 Score=24.75 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.8
Q ss_pred HhhhcccceeeeeeecCCCCccCCC
Q 042044 35 IAVLCDAKVSLIIFATSGKMHDYSS 59 (218)
Q Consensus 35 LsvLCda~v~liifs~~gk~~~~~s 59 (218)
+++-|||++-+++.+.+.....|++
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~pP 82 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFPP 82 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCCc
Confidence 6888999999999999988777766
No 110
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.31 E-value=4.2e+02 Score=25.29 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=17.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYVL 162 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~~ 162 (218)
..++.+.+.++.+|..|..++
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999998776
Done!