Query 042044
Match_columns 218
No_of_seqs 232 out of 1647
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 23:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 3.4E-39 1.2E-43 228.7 3.6 73 2-74 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.1E-38 7.2E-43 230.1 3.5 74 2-75 1-74 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.7E-37 5.8E-42 229.0 0.9 78 1-81 16-93 (100)
4 1hbx_A SRF, serum response fac 100.0 1.8E-36 6.1E-41 220.8 0.8 77 1-80 10-86 (92)
5 1k6o_B SRF, serum response fac 100.0 6.8E-36 2.3E-40 221.8 0.8 69 1-69 9-77 (103)
6 1dh3_A Transcription factor CR 83.6 3.9 0.00013 26.1 6.1 34 131-164 14-47 (55)
7 2wt7_A Proto-oncogene protein 81.4 4.9 0.00017 26.2 6.1 36 129-164 13-48 (63)
8 2dgc_A Protein (GCN4); basic d 81.4 5 0.00017 26.3 6.1 37 128-164 19-55 (63)
9 1j1d_C Troponin I, TNI; THIN f 80.9 15 0.0005 27.8 9.3 45 109-153 53-97 (133)
10 1t2k_D Cyclic-AMP-dependent tr 80.5 5.6 0.00019 25.7 6.1 36 129-164 12-47 (61)
11 1jnm_A Proto-oncogene C-JUN; B 79.5 6.2 0.00021 25.5 6.1 36 129-164 12-47 (62)
12 1j1d_B Troponin T, TNT; THIN f 72.9 12 0.00042 27.1 6.7 46 110-155 38-83 (106)
13 3nmd_A CGMP dependent protein 72.4 19 0.00066 24.2 7.8 51 111-164 15-65 (72)
14 1ytz_T Troponin T; muscle, THI 71.4 14 0.00047 26.9 6.6 47 109-155 37-83 (107)
15 1ci6_A Transcription factor AT 69.3 16 0.00055 23.7 6.1 36 129-164 13-48 (63)
16 1j1e_C Troponin I, TNI; THIN f 68.5 28 0.00096 27.6 8.4 42 110-151 54-95 (180)
17 2rpa_A Katanin P60 ATPase-cont 59.2 3.4 0.00012 28.4 1.2 35 29-74 16-50 (78)
18 1a93_B MAX protein, coiled coi 59.0 7.4 0.00025 22.4 2.4 23 84-106 11-33 (34)
19 1z56_A Ligase interacting fact 57.9 20 0.00068 29.7 5.8 111 9-152 117-227 (246)
20 3oja_A Leucine-rich immune mol 55.6 64 0.0022 28.6 9.5 47 118-164 414-460 (487)
21 2oa5_A Hypothetical protein BQ 51.0 44 0.0015 24.3 6.1 58 80-137 8-67 (110)
22 2l16_A SEC-independent protein 50.8 0.99 3.4E-05 31.2 -2.7 29 43-73 16-44 (78)
23 3thf_A Protein shroom; coiled- 49.0 56 0.0019 26.1 6.9 41 130-170 10-50 (190)
24 1gu4_A CAAT/enhancer binding p 47.9 58 0.002 22.1 6.1 37 128-164 25-61 (78)
25 1hjb_A Ccaat/enhancer binding 46.5 60 0.0021 22.5 6.1 37 128-164 25-61 (87)
26 2dfs_A Myosin-5A; myosin-V, in 44.2 1.2E+02 0.004 30.5 10.0 23 142-164 1019-1041(1080)
27 2ky6_A Mediator of RNA polymer 40.3 18 0.00062 28.3 2.8 37 36-72 116-160 (166)
28 1ytz_I Troponin I; muscle, THI 40.3 1.4E+02 0.0046 23.6 8.2 43 109-152 51-93 (182)
29 3s9g_A Protein hexim1; cyclin 39.0 79 0.0027 22.5 5.7 20 142-161 68-87 (104)
30 3hnw_A Uncharacterized protein 36.9 1.3E+02 0.0044 22.5 8.0 18 86-103 67-84 (138)
31 2w6a_A ARF GTPase-activating p 36.7 84 0.0029 20.3 5.7 44 112-159 8-61 (63)
32 2eqb_B RAB guanine nucleotide 34.1 1E+02 0.0035 21.8 5.7 21 144-164 74-94 (97)
33 1gd2_E Transcription factor PA 34.0 1E+02 0.0035 20.4 6.1 32 128-159 18-49 (70)
34 3oq0_A DBF4, protein DNA52; DD 33.4 26 0.00091 26.9 2.7 54 23-80 46-105 (151)
35 2qez_A Ethanolamine ammonia-ly 31.2 14 0.00048 33.1 0.9 17 51-69 9-25 (455)
36 1fxk_A Prefoldin; archaeal pro 30.9 1.3E+02 0.0044 20.6 6.5 12 62-73 3-14 (107)
37 1gk7_A Vimentin; intermediate 30.0 86 0.0029 18.3 5.1 19 144-162 18-36 (39)
38 3abq_A Ethanolamine ammonia-ly 29.7 14 0.00049 33.1 0.7 17 51-69 8-24 (453)
39 2jee_A YIIU; FTSZ, septum, coi 28.7 1.4E+02 0.0048 20.4 8.3 43 114-157 3-45 (81)
40 1g6u_A Domain swapped dimer; d 28.4 96 0.0033 18.3 4.6 21 112-132 15-35 (48)
41 1m1j_C Fibrinogen gamma chain; 28.0 3.2E+02 0.011 24.2 9.5 58 50-109 11-70 (409)
42 1deb_A APC protein, adenomatou 27.9 39 0.0013 21.1 2.3 25 81-105 4-28 (54)
43 1dip_A Delta-sleep-inducing pe 24.4 39 0.0013 22.8 1.9 18 142-159 18-35 (78)
44 3a7p_A Autophagy protein 16; c 21.7 2.7E+02 0.0093 21.2 11.1 23 142-164 113-135 (152)
45 2aze_A Transcription factor DP 21.3 2.8E+02 0.0096 21.2 7.3 27 115-141 3-29 (155)
46 3twe_A Alpha4H; unknown functi 20.8 82 0.0028 16.5 2.3 18 87-104 8-25 (27)
47 1x4t_A Hypothetical protein LO 20.7 1.3E+02 0.0044 21.1 4.1 33 79-111 51-83 (92)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=3.4e-39 Score=228.66 Aligned_cols=73 Identities=48% Similarity=0.775 Sum_probs=69.1
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcc
Q 042044 2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSG 74 (218)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~ 74 (218)
|||||+|++|||.++|||||+|||+||||||+|||||||||||||||||+|++|+|+|++|++||+||++.++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999998559999999998753
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.1e-38 Score=230.10 Aligned_cols=74 Identities=47% Similarity=0.762 Sum_probs=70.7
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhccc
Q 042044 2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGK 75 (218)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~ 75 (218)
|||||+|++|||+++|||||||||+||||||+||||||||+||||||||+|++|+|+|++|..||+||++.+..
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~ 74 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999994499999999987653
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.7e-37 Score=229.04 Aligned_cols=78 Identities=38% Similarity=0.568 Sum_probs=71.6
Q ss_pred CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcccccccc
Q 042044 1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDA 80 (218)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~ 80 (218)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|.++..||++|. |.++|+.
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~---G~~lw~~ 92 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQE---GRNLIQA 92 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHH---HHHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhh---CCcHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999944999998774 4566765
Q ss_pred c
Q 042044 81 K 81 (218)
Q Consensus 81 ~ 81 (218)
.
T Consensus 93 c 93 (100)
T 1mnm_A 93 C 93 (100)
T ss_dssp H
T ss_pred h
Confidence 3
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.8e-36 Score=220.79 Aligned_cols=77 Identities=30% Similarity=0.520 Sum_probs=70.4
Q ss_pred CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcccccccc
Q 042044 1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDA 80 (218)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~ 80 (218)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|.+|..||++| +|..+|+.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~---~Gk~Li~~ 86 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE---TGKALIQT 86 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSH---HHHHHHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhh---cccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999994599999965 34555543
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=6.8e-36 Score=221.78 Aligned_cols=69 Identities=29% Similarity=0.509 Sum_probs=66.3
Q ss_pred CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHH
Q 042044 1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAY 69 (218)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY 69 (218)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|.+|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999995599999864
No 6
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=83.59 E-value=3.9 Score=26.06 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 131 TGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 131 ~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
..-|.||...++.|..++..|+.+|..|...+..
T Consensus 14 ~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 14 RESRRKKKEYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999977753
No 7
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=81.40 E-value=4.9 Score=26.20 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=31.4
Q ss_pred hhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 129 GLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 129 ~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
|-.+.|.||.+.+..|..++..|+.+|..|...+..
T Consensus 13 AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 13 AAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999988754
No 8
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=81.37 E-value=5 Score=26.31 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=31.7
Q ss_pred HhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 128 NGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 128 ~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
.|-.+.|.||.+-+..|..++..|..+|..|...+..
T Consensus 19 eAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 19 EAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999999999999999977653
No 9
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=80.89 E-value=15 Score=27.78 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHH
Q 042044 109 EDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEE 153 (218)
Q Consensus 109 edL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~e 153 (218)
-++++||.++|+.+-..|-..+..+-+-|+.+-...+++...+.+
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~d 97 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIAD 97 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHH
Confidence 389999999999999999999999999999987666665554443
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.47 E-value=5.6 Score=25.65 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=31.4
Q ss_pred hhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 129 GLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 129 ~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
+-.+.|.||.+.+..|..++..|+.+|..|...+..
T Consensus 12 AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 12 AASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999988754
No 11
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.51 E-value=6.2 Score=25.54 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=31.6
Q ss_pred hhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 129 GLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 129 ~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
|-.+.|.||.+.+..|..++..|..+|..|...+..
T Consensus 12 AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 12 AASKSRKRKLERIARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999988754
No 12
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=72.93 E-value=12 Score=27.09 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHH
Q 042044 110 DVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEH 155 (218)
Q Consensus 110 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een 155 (218)
++++||.++|+.+-..|-..+..+-+-|+.+-..++++...+.+-|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~ 83 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLR 83 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHH
Confidence 8899999999999999999999999999998877766655554433
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.43 E-value=19 Score=24.24 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 111 VTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 111 L~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
+.++.. +..|+..|......+|.+ ..+|+.+.+.....+++...|+..+..
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~k-d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQR-DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 888999999999999876 566888888888888888888877754
No 14
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=71.35 E-value=14 Score=26.88 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHH
Q 042044 109 EDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEH 155 (218)
Q Consensus 109 edL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een 155 (218)
-++++||.++|+.+-..|-..+..+-+-|+.+-..++++...+.+-|
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~ 83 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLR 83 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Confidence 38999999999999999999999999999998877776655554433
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.33 E-value=16 Score=23.70 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=30.0
Q ss_pred hhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 129 GLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 129 ~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
|-.+.|.+|.+-++.+..+...|..+|..|...+..
T Consensus 13 AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 13 AATRYRQKKRAEQEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888899999999999999999988754
No 16
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=68.53 E-value=28 Score=27.58 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHH
Q 042044 110 DVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKML 151 (218)
Q Consensus 110 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l 151 (218)
+|++||.++|+.+-..|-..+..+-+-|+.+-...+++...+
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI 95 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEI 95 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhH
Confidence 899999999999999999999999999998875555544433
No 17
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=59.16 E-value=3.4 Score=28.43 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=28.5
Q ss_pred HHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcc
Q 042044 29 IKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSG 74 (218)
Q Consensus 29 ~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~ 74 (218)
+|+|+|.+.+++=|.|++.|.. +-+-|+||-....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHhcC
Confidence 6899999999999998876653 6778888877654
No 18
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.96 E-value=7.4 Score=22.44 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.8
Q ss_pred hhhhHHHHhHhHhhhhhhhhhhc
Q 042044 84 NLYNEIDRIKKENDSMQIKLRHL 106 (218)
Q Consensus 84 ~l~~el~kLkke~~~L~~~lR~l 106 (218)
..+++|+.|+++|..|+.++|.+
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999998865
No 19
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=57.89 E-value=20 Score=29.72 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=34.3
Q ss_pred EEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhccccccccccchhhhH
Q 042044 9 KRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDAKHENLYNE 88 (218)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~~~e~l~~e 88 (218)
-.|++...=++|+.||-.||..|..+|+.--|-+=++=.|--+.++|..++ .+-++|.++- ..
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q~i~----~ln~k~~~~E-------------~s 179 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYKDIC----CVNDSYRNIK-------------ES 179 (246)
T ss_dssp ------------------------------------------CTTSGGGTT----HHHHHHHHTT-------------TT
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHHHHH----HHHHHHHHHH-------------HH
Confidence 345555555899999999999999988876655555544554555554433 3445565432 11
Q ss_pred HHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHH
Q 042044 89 IDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLE 152 (218)
Q Consensus 89 l~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~ 152 (218)
+..|+.+.+.|... +++ +++.|+..=++.|..=..+|..-|+|++.++
T Consensus 180 i~~L~~qLeElv~~--------------k~~--~dqLi~~RD~~tR~~fv~LLNEKK~KIR~qq 227 (246)
T 1z56_A 180 DSSNRNRVEQLARE--------------REL--LDKLLETRDERTRAMMVTLLNEKKKKIRELH 227 (246)
T ss_dssp TTHHHHHHHHTTTT--------------HHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHH--------------HHH--HHHHHHhhcchhHHHHHHHHhHHHHHHHHHH
Confidence 22223333322221 122 2355666667777777777777777776554
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.61 E-value=64 Score=28.56 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 118 ELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 118 EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
....--..+...+...|++..+.++..+..+..+.++|.+|...+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 33443444666677788888888888999999999999999988876
No 21
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=50.98 E-value=44 Score=24.27 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=42.5
Q ss_pred cccchhhhHHHHhHhHhhhhhhhhhhc--cCCCCCCCCHHHHHHHHHHHHHhhHhHHHHH
Q 042044 80 AKHENLYNEIDRIKKENDSMQIKLRHL--KGEDVTSLNHKELMALEDALENGLTGIRDKQ 137 (218)
Q Consensus 80 ~~~e~l~~el~kLkke~~~L~~~lR~l--~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK 137 (218)
.-.|.|..++.+|+-||..|.+.++.- -+.+-..|+..+=..+--..-.+|...-.+|
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999998752 1235677899988888888888887766665
No 22
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=50.82 E-value=0.99 Score=31.16 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=21.7
Q ss_pred eeeeeeecCCCCccCCCchHHHHHHHHhhhc
Q 042044 43 VSLIIFATSGKMHDYSSAPMFEILEAYHKQS 73 (218)
Q Consensus 43 v~liifs~~gk~~~~~s~~~~~il~RY~~~~ 73 (218)
|+||||.| +|+++... .+-+.+-.|++..
T Consensus 16 VaLlvfGp-kkLP~l~r-~lGk~ir~fK~~~ 44 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR-AAGRTLLEFKSAT 44 (78)
T ss_dssp HHHHHSCT-TTHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH-HHHHHHHHHHHHH
Confidence 78899998 68887766 5667777776654
No 23
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=49.01 E-value=56 Score=26.05 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=34.0
Q ss_pred hHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 042044 130 LTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQ 170 (218)
Q Consensus 130 L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~~~~~~~ 170 (218)
-+.|..+|.++++.+++|...|.++-..|...+....+-+.
T Consensus 10 ~~~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~ 50 (190)
T 3thf_A 10 TNLIKQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQ 50 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45789999999999999999999999999988766444433
No 24
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=47.89 E-value=58 Score=22.07 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=28.6
Q ss_pred HhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 128 NGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 128 ~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
.|..+-|.++..--..+..++..|+.+|..|...+..
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666678889999999999999988864
No 25
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.53 E-value=60 Score=22.50 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=27.1
Q ss_pred HhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044 128 NGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 128 ~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~ 164 (218)
.|..+-|+++..--..+..+...|+.+|..|+..+.+
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555577888888999999999988865
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.18 E-value=1.2e+02 Score=30.47 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~~~~ 164 (218)
+.|+.++..|+++|..|+.++.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999988876
No 27
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=40.30 E-value=18 Score=28.25 Aligned_cols=37 Identities=8% Similarity=0.317 Sum_probs=26.6
Q ss_pred hhhcccceeeeeeecCCCCcc-CCCch-------HHHHHHHHhhh
Q 042044 36 AVLCDAKVSLIIFATSGKMHD-YSSAP-------MFEILEAYHKQ 72 (218)
Q Consensus 36 svLCda~v~liifs~~gk~~~-~~s~~-------~~~il~RY~~~ 72 (218)
+.-|++.|-+++|||.-+.|. |.+.+ +.+||+.|+..
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 456999999999999877654 65544 66677766554
No 28
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=40.29 E-value=1.4e+02 Score=23.65 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHH
Q 042044 109 EDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLE 152 (218)
Q Consensus 109 edL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~ 152 (218)
-+|++ |.++|+.+-..|-..+..+-+-|+.+-..++++...+.
T Consensus 51 Lnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~ 93 (182)
T 1ytz_I 51 LSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELE 93 (182)
T ss_dssp CCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHH
Confidence 38999 99999999999999999999999888766666544333
No 29
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=39.00 E-value=79 Score=22.55 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=14.9
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYV 161 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~ 161 (218)
..|..++..|..||..|...
T Consensus 68 ~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888887733
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.90 E-value=1.3e+02 Score=22.46 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=9.0
Q ss_pred hhHHHHhHhHhhhhhhhh
Q 042044 86 YNEIDRIKKENDSMQIKL 103 (218)
Q Consensus 86 ~~el~kLkke~~~L~~~l 103 (218)
-+++-+++++++.|+.++
T Consensus 67 adEl~k~~~~~~~L~~~l 84 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDI 84 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 31
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=36.74 E-value=84 Score=20.26 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHhhHhHHHHHHHHH----------HHHHHhHHHHHHHHHHHH
Q 042044 112 TSLNHKELMALEDALENGLTGIRDKQSEMM----------ERMRKNGKMLEEEHNYLK 159 (218)
Q Consensus 112 ~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll----------~~lkkk~~~l~een~~L~ 159 (218)
+..++.|...+...|-.+=.+| .++| ..++++...|+-||..|+
T Consensus 8 gpit~qeylevK~ALaaSeAki----QQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKV----QQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHH----HHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4578888887777766665544 4454 245667777777777776
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.15 E-value=1e+02 Score=21.83 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 042044 144 MRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 144 lkkk~~~l~een~~L~~~~~~ 164 (218)
-++.-..++..|..|..+|.+
T Consensus 74 ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 74 ARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344445556666666655543
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.00 E-value=1e+02 Score=20.39 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=23.4
Q ss_pred HhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042044 128 NGLTGIRDKQSEMMERMRKNGKMLEEEHNYLK 159 (218)
Q Consensus 128 ~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~ 159 (218)
.+-...|.||.+-|..|..++..|+..|..|.
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~ 49 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTT 49 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999877777777766555443
No 34
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=33.40 E-value=26 Score=26.94 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=32.6
Q ss_pred hhhchHHHHHHH-----Hhhhcccceeeeeee-cCCCCccCCCchHHHHHHHHhhhcccccccc
Q 042044 23 KRRNGLIKKAKE-----IAVLCDAKVSLIIFA-TSGKMHDYSSAPMFEILEAYHKQSGKKLWDA 80 (218)
Q Consensus 23 KRr~GL~KKA~E-----LsvLCda~v~liifs-~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~ 80 (218)
+|+.-|+|||-. +..--|-+|.+||-. |..+...|++ .+||.|=++. +.++|..
T Consensus 46 ~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~---~DIL~rAr~~-~mKIWs~ 105 (151)
T 3oq0_A 46 DKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKD---TDILSRAKKN-YMKVWSY 105 (151)
T ss_dssp HHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCT---TSHHHHHHHT-TCEEEEH
T ss_pred HHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCc---chHHHHHHHc-CCeeecH
Confidence 456667777743 334456778887755 3345555666 4466655433 6778864
No 35
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=31.23 E-value=14 Score=33.14 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=13.3
Q ss_pred CCCCccCCCchHHHHHHHH
Q 042044 51 SGKMHDYSSAPMFEILEAY 69 (218)
Q Consensus 51 ~gk~~~~~s~~~~~il~RY 69 (218)
.|..|.|.+ +++++.+=
T Consensus 9 ~~~~y~F~~--lk~vlAkA 25 (455)
T 2qez_A 9 FGHTYQFKS--ITDVLAKA 25 (455)
T ss_dssp SSSEEECSC--HHHHHHHT
T ss_pred CCeeEeeCC--HHHHHhhc
Confidence 477888888 89888754
No 36
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.92 E-value=1.3e+02 Score=20.65 Aligned_cols=12 Identities=8% Similarity=0.216 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhc
Q 042044 62 MFEILEAYHKQS 73 (218)
Q Consensus 62 ~~~il~RY~~~~ 73 (218)
+...+.+|+...
T Consensus 3 ~Q~~i~~f~~lq 14 (107)
T 1fxk_A 3 VQHQLAQFQQLQ 14 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667788887653
No 37
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=30.04 E-value=86 Score=18.30 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 042044 144 MRKNGKMLEEEHNYLKYVL 162 (218)
Q Consensus 144 lkkk~~~l~een~~L~~~~ 162 (218)
+=.|++.|+.+|..|..++
T Consensus 18 yidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 18 YIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3356777888998887655
No 38
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=29.71 E-value=14 Score=33.13 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=12.9
Q ss_pred CCCCccCCCchHHHHHHHH
Q 042044 51 SGKMHDYSSAPMFEILEAY 69 (218)
Q Consensus 51 ~gk~~~~~s~~~~~il~RY 69 (218)
.|..|.|.+ +++++.+=
T Consensus 8 ~~~~y~F~~--lk~vlAkA 24 (453)
T 3abq_A 8 FGNVYQFKD--VKEVLAKA 24 (453)
T ss_dssp TTEEEECSS--HHHHHHHT
T ss_pred CCeeEeeCC--HHHHHhhc
Confidence 467788888 88888753
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.71 E-value=1.4e+02 Score=20.38 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 042044 114 LNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNY 157 (218)
Q Consensus 114 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~ 157 (218)
+|++=|..||..+..++..|--=++++ +.||.+...|.+++..
T Consensus 3 MS~ElleqLE~KIq~avdtI~lLqmEi-eELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTITLLQMEI-EELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 688889999999999999886654443 4455555444444444
No 40
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.40 E-value=96 Score=18.35 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHhhHh
Q 042044 112 TSLNHKELMALEDALENGLTG 132 (218)
Q Consensus 112 ~~Ls~~EL~~LE~~Le~~L~~ 132 (218)
.++|.+||-.||..|..--++
T Consensus 15 egfspeelaaleselqalekk 35 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKK 35 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999877654333
No 41
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.96 E-value=3.2e+02 Score=24.19 Aligned_cols=58 Identities=9% Similarity=0.214 Sum_probs=35.4
Q ss_pred cCCCCccCCCch--HHHHHHHHhhhccccccccccchhhhHHHHhHhHhhhhhhhhhhccCC
Q 042044 50 TSGKMHDYSSAP--MFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGE 109 (218)
Q Consensus 50 ~~gk~~~~~s~~--~~~il~RY~~~~~~~~~~~~~e~l~~el~kLkke~~~L~~~lR~l~Ge 109 (218)
++..+-.||+.- +.+.|.+|+.....++. ..+.+..++..+..+...|...+.....+
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~~l~--~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDGELL--EIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445566677754 99999999885443322 12445556666666666666665544433
No 42
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.94 E-value=39 Score=21.09 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=20.4
Q ss_pred ccchhhhHHHHhHhHhhhhhhhhhh
Q 042044 81 KHENLYNEIDRIKKENDSMQIKLRH 105 (218)
Q Consensus 81 ~~e~l~~el~kLkke~~~L~~~lR~ 105 (218)
.|+.|-.+++-|+++|..|++++..
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3567778888999999999998764
No 43
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.35 E-value=39 Score=22.81 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=9.5
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLK 159 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~ 159 (218)
+.||.+++.|.+.|..|.
T Consensus 18 evLKe~I~EL~e~~~qLE 35 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 44
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.73 E-value=2.7e+02 Score=21.24 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 042044 142 ERMRKNGKMLEEEHNYLKYVLRQ 164 (218)
Q Consensus 142 ~~lkkk~~~l~een~~L~~~~~~ 164 (218)
..+..+.+.|++||..|...+..
T Consensus 113 n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999998765543
No 45
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=21.27 E-value=2.8e+02 Score=21.22 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 042044 115 NHKELMALEDALENGLTGIRDKQSEMM 141 (218)
Q Consensus 115 s~~EL~~LE~~Le~~L~~VR~RK~~ll 141 (218)
|..|...||..-...+.+|+.++.++-
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq 29 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ 29 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888887765554
No 46
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.83 E-value=82 Score=16.49 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=8.1
Q ss_pred hHHHHhHhHhhhhhhhhh
Q 042044 87 NEIDRIKKENDSMQIKLR 104 (218)
Q Consensus 87 ~el~kLkke~~~L~~~lR 104 (218)
.|++.|.+...+|++.+|
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444444444444443
No 47
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=20.68 E-value=1.3e+02 Score=21.12 Aligned_cols=33 Identities=21% Similarity=0.541 Sum_probs=23.7
Q ss_pred ccccchhhhHHHHhHhHhhhhhhhhhhccCCCC
Q 042044 79 DAKHENLYNEIDRIKKENDSMQIKLRHLKGEDV 111 (218)
Q Consensus 79 ~~~~e~l~~el~kLkke~~~L~~~lR~l~GedL 111 (218)
+.+.-.|..|+++|-.+-..=+..|+.|.|.|.
T Consensus 51 E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY 83 (92)
T 1x4t_A 51 EFRIRDLNDEINKLLREKGHWEVRIKELGGPDY 83 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 344456777777777777777777888888875
Done!