BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042046
(687 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/508 (21%), Positives = 202/508 (39%), Gaps = 55/508 (10%)
Query: 193 LESDFRKLLTENS-VPLP------MSSPSTLGQQACIAPSPLPVSVIHKLQAILGRLIAN 245
LES+FR L+T +S V P +S+ L Q + LP SV+ + I L+
Sbjct: 68 LESEFRSLMTRHSKVVSPVLLLDLISADDELEVQEDVVLEHLPESVLRDVVRISRWLVEY 127
Query: 246 NRFDKCISVYVEVRSSNVRASLQALDLDYLEI----------SIAEFNDVQSIEGYIAQW 295
R ++VY ++RSS + S++ L + + +I + I +
Sbjct: 128 GRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRP 187
Query: 296 GR------------HLEFAVKHLFEAEYNLCNDVFERMGKDIWMGCFAKIAAQAGMLAFL 343
GR H A L ++EY L ++ + + A ML
Sbjct: 188 GRDDMLDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEHHQKKTFDSLIQDALDGLMLE-- 245
Query: 344 QFGKTVTESXXXXXXXXXXXXXFA------SLNKLRTDFNRLFGGAACVEIQNLTRDLIN 397
G+ + + L + + +F+++ G A +N LI
Sbjct: 246 --GENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTAA-STKNKLPGLIT 302
Query: 398 RVINGAAEIFGELLTQV--ELQRQIPPPPDGSVPRLVSFITEYCNKLLGDDYKP-----V 450
+ A+ + + + ++ P DG+V L S + +LL D++ +
Sbjct: 303 SMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLL--DFQETAGAML 360
Query: 451 LTQVLVIHRSWKHEKFQEKLLVNEVLKIVKAIEQNLETWLKAYDDTTLSHFFAMNNHCHL 510
+Q + +F ++LL + K++ ++ NL + K Y+D LS F NN+ ++
Sbjct: 361 ASQETSSSATSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYI 420
Query: 511 YXXXXXXXXXXXXXXXWLREHEQYKDYYSTIF--FRDSWGKIPSHLSREGLIMFSGG--- 565
Y+++ ++ SW K+ +++ + L +F G
Sbjct: 421 LKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTYQRSWLKVTDYIAEKNLPVFQPGVKL 480
Query: 566 RASARDLVKKRLKAFNDALDDVYKKQSNWVILDKDLREKTSQLITQAIAPIYRSYMQNYG 625
R R ++K+R K FND L+++ K Q W I D + R+K Q + Y +++ YG
Sbjct: 481 RDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYG 540
Query: 626 ALVEQEASSGKYAKYTVETLEKMLGSLF 653
+ V + KY KY VE + M+ LF
Sbjct: 541 S-VPFTKNPEKYIKYRVEQVGDMIDRLF 567
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 532 EQYKDYYSTIFFRDSWGKIPSHLSREGLIMFSGGRASARDLVKKRLKAFNDALDDVYKKQ 591
E+ K Y + D W + ++L I SG ++ ++ +K++ + FN+ +D+ K
Sbjct: 446 ERLKKRYISYMVSD-WRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKT 504
Query: 592 SNWVILDKDLREKTSQLITQAIAPIYRSYMQNYGALVEQEASSGKYAKYTVETLEKMLGS 651
+ + D L+ I + P+Y + Y + + K+ KYT + L +L
Sbjct: 505 KQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYK---DSFKNPRKHIKYTPDELTTVLNQ 561
Query: 652 L 652
L
Sbjct: 562 L 562
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 532 EQYKDYYSTIFFRDSWGKIPSHLSREGLIMFSGGRASARDLVKKRLKAFNDALDDVYKKQ 591
E+ K Y + D W + ++L I SG ++ ++ +K++ + FN+ +D+ K
Sbjct: 445 ERLKKRYISYMVSD-WRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKT 503
Query: 592 SNWVILDKDLREKTSQLITQAIAPIYRSYMQNYGALVEQEASSGKYAKYTVETLEKMLGS 651
+ + D L+ I + P+Y + Y + + K+ KYT + L +L
Sbjct: 504 KQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYK---DSFKNPRKHIKYTPDELTTVLNQ 560
Query: 652 L 652
L
Sbjct: 561 L 561
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 532 EQYKDYYSTIFFRDSWGKIPSHLSREGLIMFSGGRASARDLVKKRLKAFNDALDDVYKKQ 591
E+ K Y + D W + ++L I SG ++ ++ +K++ + FN+ +D+ K
Sbjct: 448 ERLKKRYISYXVSD-WRDLTANLXDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKT 506
Query: 592 SNWVILDKDLREKTSQLITQAIAPIYRSYMQNYGALVEQEASSGKYAKYTVETLEKMLGS 651
+ + D L+ I + P Y + Y + + K+ KYT + L +L
Sbjct: 507 KQYKLSDPSLKVTLKSEIISLVXPXYERFYSRYK---DSFKNPRKHIKYTPDELTTVLNQ 563
Query: 652 L 652
L
Sbjct: 564 L 564
>pdb|3UNW|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UO9|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
Length = 534
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 576 RLKAFNDALDDVYKKQSNWVILDKDLREKTSQ----LITQA-----IAPIYRSYMQNYGA 626
RLK D L + S+ V+LDKDL +K Q L+TQA + P + S+ +
Sbjct: 104 RLKECMDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDE 163
Query: 627 LVE--QEASSGKYAKY 640
L E ++ S GK A Y
Sbjct: 164 LYESAKKQSGGKVADY 179
>pdb|3SS3|A Chain A, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|B Chain B, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|C Chain C, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|D Chain D, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS4|A Chain A, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|B Chain B, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|C Chain C, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|D Chain D, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS5|A Chain A, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|B Chain B, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|C Chain C, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|D Chain D, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
Length = 479
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 576 RLKAFNDALDDVYKKQSNWVILDKDLREKTSQ----LITQA-----IAPIYRSYMQNYGA 626
RLK D L + S+ V+LDKDL +K Q L+TQA + P + S+ +
Sbjct: 55 RLKECMDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDE 114
Query: 627 LVE--QEASSGKYAKY 640
L E ++ S GK A Y
Sbjct: 115 LYESAKKQSGGKVADY 130
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 556 REGLIMFSGGRASARDLVKKRLKAFNDALDDVYKKQSNWVILDKDLREKTSQLITQAIAP 615
+E + F G + + ++++KK+ K D V+ + S S++ P
Sbjct: 48 QEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQ-----------SEVFEHTTKP 96
Query: 616 IYRSYMQNYGALVEQEASSGKYAKYTVETLEKMLGSLFQP 655
I RS++ Y V ++G +T MLGS +P
Sbjct: 97 ILRSFLNGYNCTVLAYGATGAGKTHT------MLGSADEP 130
>pdb|2AFA|A Chain A, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|B Chain B, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|C Chain C, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|D Chain D, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|E Chain E, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|F Chain F, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
Length = 425
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 560 IMFSGGRASARDLVKKRLKAFNDALDDVYKKQSNWVILDKDLREKTSQLITQAIAPIYRS 619
+ S GR A DLV +KA N AL D KK W D Q + A Y+
Sbjct: 64 VAASXGRPGAYDLVDHGIKAXNGALRD--KKYGGWYACVND------QGVVDASKQGYQH 115
Query: 620 YMQNYG---ALVEQEASSGKYAKYTVETLEKMLGS 651
+ G A+ + K YT+E +EK S
Sbjct: 116 FFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWS 150
>pdb|2ZBL|A Chain A, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|B Chain B, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|C Chain C, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|D Chain D, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|E Chain E, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|F Chain F, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
Length = 421
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 563 SGGRASARDLVKKRLKAFNDALDDVYKKQSNWVILDKDLREKTSQLITQAIAPIYRSYMQ 622
S GR A DLV +KA N AL D KK W D Q + A Y+ +
Sbjct: 65 SMGRPGAYDLVDHGIKAMNGALRD--KKYGGWYACVND------QGVVDASKQGYQHFFA 116
Query: 623 NYG---ALVEQEASSGKYAKYTVETLEKMLGS 651
G A+ + K YT+E +EK S
Sbjct: 117 LLGAASAVTTGHPEARKLLDYTIEVIEKYFWS 148
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 84 AVGPAAAVLKVFDA-VHGLEKSLLSDPRNDLPGYLSVLKRLEEALRFLGDNCGLAIQ 139
A GP + DA + L K+ R D+P Y S K E+ L + + CG A++
Sbjct: 324 AAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,569,583
Number of Sequences: 62578
Number of extensions: 713912
Number of successful extensions: 1656
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 15
length of query: 687
length of database: 14,973,337
effective HSP length: 105
effective length of query: 582
effective length of database: 8,402,647
effective search space: 4890340554
effective search space used: 4890340554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)