Query 042046
Match_columns 687
No_of_seqs 196 out of 502
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 23:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 2.6E-97 9E-102 848.4 43.9 520 88-656 2-570 (571)
2 2b1e_A Exocyst complex compone 100.0 1.1E-94 3.8E-99 822.9 38.3 520 77-653 1-563 (564)
3 1zva_A E2 glycoprotein; membra 46.1 19 0.00064 28.6 3.6 59 24-85 14-73 (77)
4 2x5h_A ORF 131; viral protein; 35.6 8.5 0.00029 31.1 0.2 20 617-642 77-96 (97)
5 3ci9_A Heat shock factor-bindi 33.7 31 0.0011 25.1 2.9 40 22-64 7-47 (48)
6 3ghg_A Fibrinogen alpha chain; 31.4 81 0.0028 34.4 6.9 57 67-127 126-189 (562)
7 2d2s_A Exocyst complex compone 30.2 3.9E+02 0.013 25.9 20.3 40 232-271 91-130 (235)
8 1deq_A Fibrinogen (alpha chain 24.4 3E+02 0.01 28.8 9.4 17 111-127 176-192 (390)
9 2ibf_B Invasin IPAA, 70 kDa an 19.0 39 0.0014 20.4 0.9 21 33-56 5-25 (26)
10 4e9f_A Methyl-CPG-binding doma 17.3 72 0.0025 29.3 2.8 49 581-652 33-81 (161)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=2.6e-97 Score=848.37 Aligned_cols=520 Identities=24% Similarity=0.381 Sum_probs=443.8
Q ss_pred HHHHHHHhhhhhccccccccCCCCChhhHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhcccccHHHHHHHHHhhh
Q 042046 88 AAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRLEEALRFLGDNCGLAIQWLEDIVEYLEDNRMADEKYLLNLKKSLK 167 (687)
Q Consensus 88 ~~~vl~~~~~~~~~e~~i~~gp~~~l~~Yl~al~~L~~al~~l~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~ 167 (687)
+++|+++|+++++.|.+|+.||.+++.+||+||++|++|++||.+|+. ++.++.
T Consensus 2 ae~v~~~~d~~~~~e~~i~~gp~~~l~~yL~av~~l~~a~~~~~~~~~-------------------~s~~l~------- 55 (571)
T 2pft_A 2 SDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSP-------------------DSPELN------- 55 (571)
T ss_dssp -CTTSTHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHST-------------------TCHHHH-------
T ss_pred HHHHHHHHccchhhhhhhhcCcHhhHHHHHHHHHHHHHHHHHHHhcCC-------------------ChHHHH-------
Confidence 578999999999999999999999999999999999999999986532 322222
Q ss_pred hhhhcccchhhhhhhHhHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCc------CCcCCCCCCCHHHHHHHHHHHH
Q 042046 168 GLRELENGEVEIRLDGGLLDAALDKLESDFRKLLTENSVPLPMSSPST-LGQ------QACIAPSPLPVSVIHKLQAILG 240 (687)
Q Consensus 168 ~l~~~~~~~~~~~~~~~Ll~~a~~~Le~eF~~lL~~~s~p~~~~~~~~-~~~------~~~~~~~~l~~~~l~~L~~Ia~ 240 (687)
++++|+++||.+||+||++||.+++.|++|..+++ +++ .....++.+|++++++|+.||+
T Consensus 56 -------------~~~~Ll~~a~~~Le~eF~~lL~~~~~~~~p~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ia~ 122 (571)
T 2pft_A 56 -------------KVKLLFERGKESLESEFRSLMTRHSKVVSPVLLLDLISADDELEVQEDVVLEHLPESVLRDVVRISR 122 (571)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCC--------SSCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhcCcCCChHHHHhccccccccCccccccccCCCHHHHHHHHHHHH
Confidence 33599999999999999999999999999875421 011 1112235799999999999999
Q ss_pred HHHhCCCchHHHHHHHHhhhHHHHHHHHhcchhhhhhhhhh----------------------h-hhhhhhhHHHHHHHH
Q 042046 241 RLIANNRFDKCISVYVEVRSSNVRASLQALDLDYLEISIAE----------------------F-NDVQSIEGYIAQWGR 297 (687)
Q Consensus 241 ~l~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~----------------------~-~~~~~~e~~i~~w~~ 297 (687)
||+.+||.++|+++|+++|++++.+||..|+.+....+.+. . .+|+.++.+|..|++
T Consensus 123 ~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~wi~ 202 (571)
T 2pft_A 123 WLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIH 202 (571)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999965421111000 0 157778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHhHHHHHHHHHhHHHHh-hccCCh--hhhhhhhhHHHH---HHh
Q 042046 298 HLEFAVKHLFEAEYNLCNDVFERMGKDIWMGCFAKIAAQAGMLAFLQFGKTVT-ESKKDP--IKLLKLLDIFAS---LNK 371 (687)
Q Consensus 298 al~~av~~l~~~E~~L~~~vf~~~~~~~~~~~f~~i~~~~~i~~Ll~f~~~v~-~~~~~~--~klf~lLdm~~~---L~~ 371 (687)
++.+.+ .||++||+||++||+. ..+..||.+|+ ++++.+|++|+++|+ ..+++| +++|.+++||+. |.+
T Consensus 203 ~~~~~~-~l~~~Er~L~~~vf~~---~~~~~~F~~i~-~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~ 277 (571)
T 2pft_A 203 CVSAFV-KLAQSEYRLLMEIIPE---HHQKKTFDSLI-QDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQ 277 (571)
T ss_dssp HHHHHH-HHHHHHHHHHHHHSCH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHcCc---ccHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHH
Confidence 997555 5999999999999976 46788999999 778999999999997 577787 566655555554 888
Q ss_pred hHHHHHhhhCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-CCCCCCCccccchHHHHHHHHHhhcCCcHH
Q 042046 372 LRTDFNRLFGGAACVEIQNLTRDLINRVINGAAEIFGELLTQVELQR-Q-IPPPPDGSVPRLVSFITEYCNKLLGDDYKP 449 (687)
Q Consensus 372 l~p~~~~lf~~~~~~~~~~~~~~~l~~l~~~~~~~f~e~~~~i~~~~-~-~~~p~dg~Vh~lT~~vm~yl~~L~~~~y~~ 449 (687)
+.|+++.+|.|+.+ +++.++.+++++|+++++++|.||.+.|+.+. + .++|.||+|||+|+||||||+.|+ +|++
T Consensus 278 l~p~~~~~f~g~~~-~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~--~y~~ 354 (571)
T 2pft_A 278 TKPEFDQVLQGTAA-STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLL--DFQE 354 (571)
T ss_dssp HHHHHHHHTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHH--HTHH
T ss_pred HHHHHHHHHccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHH--hhHH
Confidence 99999999999877 57899999999999999999999999999874 3 355669999999999999999999 8999
Q ss_pred HHHHHHhhhc-C----CCcchhhhchHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhHHHHHHhhccCCchhhhC
Q 042046 450 VLTQVLVIHR-S----WKHEKFQEKLLVNEVLKIVKAIEQNLETWLKAYDDTTLSHFFAMNNHCHLYKSLKGTKLGDLLG 524 (687)
Q Consensus 450 ~l~~ll~~~~-~----w~~~~~~~~~l~~~i~~ii~~L~~nLe~ksk~y~d~aL~~iFLmNN~~yI~~~v~~S~L~~lLg 524 (687)
+|..+|.... + |.++..+.++|+.||.++|++|+.|||.||+.|+|++|++||||||+|||++++++|+|..+||
T Consensus 355 ~l~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg 434 (571)
T 2pft_A 355 TAGAMLASQETSSSATSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVA 434 (571)
T ss_dssp HHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHH
T ss_pred HHHHHHhccCCCcccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhC
Confidence 9999998632 2 2223345678999999999999999999999999999999999999999999999999999999
Q ss_pred ---chHHHHHHHHHHHHHHhHHHhhhhhhhhcccccccccc-CC--CChhhHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 042046 525 ---DSWLREHEQYKDYYSTIFFRDSWGKIPSHLSREGLIMF-SG--GRASARDLVKKRLKAFNDALDDVYKKQSNWVILD 598 (687)
Q Consensus 525 ---~~~~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~-~~--~~~~~r~~iKekfk~FN~~Fee~~~~q~~w~VpD 598 (687)
++|+++++..+++|++.| +++|++|+++|.+++.+.. ++ .++++|+.|||||++||.+|||+|++|+.|+|||
T Consensus 435 ~~~~~~~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~VpD 513 (571)
T 2pft_A 435 VTQKTAERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPD 513 (571)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCcccCcC
Confidence 689999999999999999 8999999999998765431 22 3578999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCHHHHHHHHhhhcCCC
Q 042046 599 KDLREKTSQLITQAIAPIYRSYMQNYGALVEQEASSGKYAKYTVETLEKMLGSLFQPK 656 (687)
Q Consensus 599 ~~LR~~Lr~~i~~~V~PaY~~F~~ry~~~~e~~k~~~KYiKYtpe~le~~L~~LF~g~ 656 (687)
|+||+.||.+|.++|+|+|++||+||++ ++|+|||+|||||||++||++|++||+|+
T Consensus 514 ~~LR~~Lr~~i~~~v~paY~~F~~r~~~-~~~~k~~~KyiKytpe~le~~L~~LFeg~ 570 (571)
T 2pft_A 514 TEQRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFDTS 570 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCCSCHHHHCCCCHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc-CcccCCCCCccccCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999986 79999999999999999999999999996
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=1.1e-94 Score=822.90 Aligned_cols=520 Identities=16% Similarity=0.207 Sum_probs=429.6
Q ss_pred HhhhHHHhhhhHHHHHHHhhhhhccccccccCCC-CChhhHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhccccc
Q 042046 77 VGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPR-NDLPGYLSVLKRLEEALRFLGDNCGLAIQWLEDIVEYLEDNRMAD 155 (687)
Q Consensus 77 ~~~nI~~tl~~~~~vl~~~~~~~~~e~~i~~gp~-~~l~~Yl~al~~L~~al~~l~~n~~~~~~~l~~~~~~~~~~~~~~ 155 (687)
.|+|||++++++++|.++++.++++|.+|..||. ++|+.||++|+||++|++||++++. .+++
T Consensus 1 ~~~NId~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~----------------~s~e 64 (564)
T 2b1e_A 1 GHMNIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQA----------------NREE 64 (564)
T ss_dssp -------CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC--------------------CCC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCC----------------Cchh
Confidence 3789999999999999999999999999999996 9999999999999999999997653 1222
Q ss_pred HHHHHHHHHhhhhhhhcccchhhhhhhHhHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcCCcCCCCCCCHHHHHHH
Q 042046 156 EKYLLNLKKSLKGLRELENGEVEIRLDGGLLDAALDKLESDFRKLLTENSVPLPMSSPSTLGQQACIAPSPLPVSVIHKL 235 (687)
Q Consensus 156 ~~~~~~v~~~~~~l~~~~~~~~~~~~~~~Ll~~a~~~Le~eF~~lL~~~s~p~~~~~~~~~~~~~~~~~~~l~~~~l~~L 235 (687)
...+.+ ++. +..+|+++|+.+||.||+.+|. ++.|++|..+ ++++ .|+|.+|++++++|
T Consensus 65 ~~~f~g---~l~-------------~~~~L~~~g~~~L~~~F~~lL~-~s~p~~p~~~--i~k~--~p~p~l~~~~l~~L 123 (564)
T 2b1e_A 65 NSEFHG---ILT-------------HLEQLIKRSEAQLRVYFISILN-SIKPFDPQIN--ITKK--MPFPYYEDQQLGAL 123 (564)
T ss_dssp SHHHHH---HHH-------------HHHHHHHHHHHHHHHHHHHHHT-TSCCCCHHHH--HHHT--CCCCCCCHHHHHHH
T ss_pred hhhhHH---HHH-------------HHHHHHHHHHHHHHHHHHHHHH-hCCCCCHHHh--hccC--CCCCCCCHHHHHHH
Confidence 111222 122 3349999999999999999999 5899998754 3444 77889999999999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhhHHHHHHHHhcchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042046 236 QAILGRLIANNRFDKCISVYVEVRSSNVRASLQALDLDYLEISIAEFNDVQSIEGYIAQWGRHLEFAVKHLFEAEYNLCN 315 (687)
Q Consensus 236 ~~Ia~~l~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~~e~~i~~w~~al~~av~~l~~~E~~L~~ 315 (687)
+.||+||+.+|+.++|+++|+++|+.++.+||..|.............+|+.++++|..|++++ .+++++|+.||+
T Consensus 124 ~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~----~~l~~~E~~L~~ 199 (564)
T 2b1e_A 124 SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL----LGFIANEKSLVD 199 (564)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH----HHHHHHHHHHHH
Confidence 9999999999999999999999999999999998864322223333457999999999999888 899999999999
Q ss_pred HhhccCChhhhhhHHHHHHhHHHHH---HHHHhHHHHhhccCCh-hhhhhhhhHHHHHHhhHHHHHhhhCCcchHHHHHH
Q 042046 316 DVFERMGKDIWMGCFAKIAAQAGML---AFLQFGKTVTESKKDP-IKLLKLLDIFASLNKLRTDFNRLFGGAACVEIQNL 391 (687)
Q Consensus 316 ~vf~~~~~~~~~~~f~~i~~~~~i~---~Ll~f~~~v~~~~~~~-~klf~lLdm~~~L~~l~p~~~~lf~~~~~~~~~~~ 391 (687)
+||+. +++.+..||..|+ +.++. .++.|..+ .++++| +++|.+||||++|.++. .+|.|..+.. ..+
T Consensus 200 ~vf~~-~~~~~~~~f~~i~-~~~l~~~~~~l~~~~~--~~k~~~~~~~f~~l~~~~~l~~~~----~~~~~~~~~~-~~~ 270 (564)
T 2b1e_A 200 DLYSQ-YTESKPHVLSQIL-SPLISAYAKLFGANLK--IVRSNLENFGFFSFELVESINDVK----KSLRGKELQN-YNL 270 (564)
T ss_dssp HHSCT-TCTTHHHHHHHHH-HHHHHHHHHHHHHHHH--CCC-----CCTHHHHHHHHHHHHH----HHTTTCCCTT-HHH
T ss_pred HHcCC-cchhhHHHHHHHH-HHHHHHHHHHHHHHHH--HHhcChhhcchhHHHHHHHHHHHH----HHHcccccch-HHH
Confidence 99998 4567889999999 55666 34444443 367888 79999999999998776 6788766543 488
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCCCccccchHHHHHHHHHhhcCCcHHHHHHHHhh--hcCCCc----
Q 042046 392 TRDLINRVINGAAEIFGELLTQVELQRQ--IPPPPDGSVPRLVSFITEYCNKLLGDDYKPVLTQVLVI--HRSWKH---- 463 (687)
Q Consensus 392 ~~~~l~~l~~~~~~~f~e~~~~i~~~~~--~~~p~dg~Vh~lT~~vm~yl~~L~~~~y~~~l~~ll~~--~~~w~~---- 463 (687)
+.+++++|+++++++|.||...|+.+.+ .++|+||||||+|+||||||+.|+ +|+.+|..++.. .++|.+
T Consensus 271 ~~~~l~~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~--~y~~~l~~~l~~~~~~~~~~~~~~ 348 (564)
T 2b1e_A 271 LQDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFS--EYKNGCLGAMDNITRENWLPSNYK 348 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHG--GGHHHHHHHTTTCCGGGTSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHH--hhHHHHHHHHHhccccCCCccccc
Confidence 9999999999999999999999987643 345799999999999999999999 999999999976 345654
Q ss_pred ------------chhhhchHHHHHHHHHHHHHHHHHHHH------------------hhCCCccchhhhhhhhHHHHHHh
Q 042046 464 ------------EKFQEKLLVNEVLKIVKAIEQNLETWL------------------KAYDDTTLSHFFAMNNHCHLYKS 513 (687)
Q Consensus 464 ------------~~~~~~~l~~~i~~ii~~L~~nLe~ks------------------k~y~d~aL~~iFLmNN~~yI~~~ 513 (687)
+.++.++|++||.++|++|+.|||+|| +.|+|++++ +|||||+|||+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~ 427 (564)
T 2b1e_A 349 EKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQI 427 (564)
T ss_dssp GGGSCCCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHH
T ss_pred ccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHH
Confidence 123456899999999999999999994 679999985 6999999999999
Q ss_pred hccCCchhhhCchHHHHHHHHHHHHHHhHHHhhhhhhhhccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhccc
Q 042046 514 LKGTKLGDLLGDSWLREHEQYKDYYSTIFFRDSWGKIPSHLSREGLIMFSGGRASARDLVKKRLKAFNDALDDVYKKQSN 593 (687)
Q Consensus 514 v~~S~L~~lLg~~~~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~~~r~~iKekfk~FN~~Fee~~~~q~~ 593 (687)
+++|+|..+||++|.+++++++++|+ .|++++|++|++||.+++...+++.++++|+.+||||++||++|||+|++|++
T Consensus 428 v~~SeL~~lLg~~~~~~~~~~~~~~~-~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~ 506 (564)
T 2b1e_A 428 VEKSELNLMLAGEGHSRLERLKKRYI-SYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQ 506 (564)
T ss_dssp HHTSTHHHHTTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhhhHhHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999995 78899999999999987643333225689999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCHHHHHHHHhhhc
Q 042046 594 WVILDKDLREKTSQLITQAIAPIYRSYMQNYGALVEQEASSGKYAKYTVETLEKMLGSLF 653 (687)
Q Consensus 594 w~VpD~~LR~~Lr~~i~~~V~PaY~~F~~ry~~~~e~~k~~~KYiKYtpe~le~~L~~LF 653 (687)
|+||||+||+.||.+|.++|+|+|++||+||+. |+|||+|||||||++||++|++|+
T Consensus 507 w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~---~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 507 YKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD---SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG---GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccCCCCCcccCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999973 789999999999999999999996
No 3
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=46.05 E-value=19 Score=28.62 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhCCchHHHhhhcccchhhccccchhhHHHHHHhhhHHHhh
Q 042046 24 SARKALKVSLEKS-KSLALALERAGPRLDDINQRLPSLEAAVRPIRADKDALVAVGGHINRAV 85 (687)
Q Consensus 24 A~~~~L~~~L~ks-~~l~~~~~~~~~~L~~~~~rL~~le~~i~Pi~~~t~~L~~~~~nI~~tl 85 (687)
+.+..|...|.+. ..++..|. .|....++||+.|...+.-.|.+....+.+..+|..++
T Consensus 14 ~aL~~L~~qL~~NFgAISSsi~---dIy~rLdGRlaaLnafv~~~~~ev~~~r~lA~~iNEcV 73 (77)
T 1zva_A 14 QALNTLVKQLSSNFGAISSVLN---DISGGRGGDISGINASVVNIQKEIDRLNEVAKNLNESL 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHTTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHH---HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 44566666 66667778888998887777888777777777777764
No 4
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=35.58 E-value=8.5 Score=31.11 Aligned_cols=20 Identities=20% Similarity=0.659 Sum_probs=10.9
Q ss_pred HHHHHHHhccccccccCCCcccccCH
Q 042046 617 YRSYMQNYGALVEQEASSGKYAKYTV 642 (687)
Q Consensus 617 Y~~F~~ry~~~~e~~k~~~KYiKYtp 642 (687)
-..|++||.+.+ .||||+||
T Consensus 77 Ia~FLeKYS~~L------nkYVkF~~ 96 (97)
T 2x5h_A 77 IAEFLEKYSDFL------NEYVKFTP 96 (97)
T ss_dssp HHHHHHHTHHHH------HHHC----
T ss_pred HHHHHHHHHHHH------HHhhcccc
Confidence 356888886433 47888886
No 5
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=33.72 E-value=31 Score=25.13 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=26.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhCCchHHHhhhcccchhhc
Q 042046 22 LISARK-ALKVSLEKSKSLALALERAGPRLDDINQRLPSLEAAV 64 (687)
Q Consensus 22 ~~A~~~-~L~~~L~ks~~l~~~~~~~~~~L~~~~~rL~~le~~i 64 (687)
+.+-++ +|.+--.|=.+++++|. .++..+..|+-.||++|
T Consensus 7 Lt~~vq~LL~qmq~kFq~mS~~I~---~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 7 LTSVVQTLLQQMQDKFQTISDQII---GRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhhc
Confidence 333444 44555567778888888 78888888999999886
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.40 E-value=81 Score=34.40 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=31.0
Q ss_pred cchhhHHHHHHhhhHHHhhhhHHHHHHHhhhhhccccccccCC-------CCChhhHHHHHHHHHHHH
Q 042046 67 IRADKDALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDP-------RNDLPGYLSVLKRLEEAL 127 (687)
Q Consensus 67 i~~~t~~L~~~~~nI~~tl~~~~~vl~~~~~~~~~e~~i~~gp-------~~~l~~Yl~al~~L~~al 127 (687)
|..+.++++.+|.||+.-+..+..+-.-.+.--+.+ +|| ..|++.|-+-=++|++++
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsC----KgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC----RGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG----GGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccccchheeecchHHHHHHHHHHHHHh
Confidence 444555666666666665555444333222211111 244 469999977777776654
No 7
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.20 E-value=3.9e+02 Score=25.90 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHhhhHHHHHHHHhcc
Q 042046 232 IHKLQAILGRLIANNRFDKCISVYVEVRSSNVRASLQALD 271 (687)
Q Consensus 232 l~~L~~Ia~~l~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~ 271 (687)
...++....+|..-|........|=+.|+..+...+..++
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~ 130 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIG 130 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778888999999999999999999999999999998774
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.40 E-value=3e+02 Score=28.80 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=12.7
Q ss_pred CChhhHHHHHHHHHHHH
Q 042046 111 NDLPGYLSVLKRLEEAL 127 (687)
Q Consensus 111 ~~l~~Yl~al~~L~~al 127 (687)
.|++.|-+-.++|..+.
T Consensus 176 vD~e~ye~qqKQL~qv~ 192 (390)
T 1deq_A 176 VDLEDYKNQQKQLEQVI 192 (390)
T ss_pred ccHHHHHHHHHHHHhhh
Confidence 58888888777777653
No 9
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=18.96 E-value=39 Score=20.39 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhCCchHHHhhh
Q 042046 33 LEKSKSLALALERAGPRLDDINQR 56 (687)
Q Consensus 33 L~ks~~l~~~~~~~~~~L~~~~~r 56 (687)
.+|.++++..++ +.|.+|++.
T Consensus 5 yekakevssals---kvlskiddt 25 (26)
T 2ibf_B 5 YEKAKEVSSALS---KVLSKIDDT 25 (26)
T ss_dssp HHHHHHHHHHHH---HHHHTSCCC
T ss_pred HHHHHHHHHHHH---HHHHhhccC
Confidence 477888888888 788887753
No 10
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=17.26 E-value=72 Score=29.35 Aligned_cols=49 Identities=10% Similarity=0.231 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCHHHHHHHHhhh
Q 042046 581 NDALDDVYKKQSNWVILDKDLREKTSQLITQAIAPIYRSYMQNYGALVEQEASSGKYAKYTVETLEKMLGSL 652 (687)
Q Consensus 581 N~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~V~PaY~~F~~ry~~~~e~~k~~~KYiKYtpe~le~~L~~L 652 (687)
---.-++...|++|. .|.|+|.+|+++|. .|+...+-++++|+.+|..+
T Consensus 33 ~vLVs~ILsqQT~~~----------------~v~~~~~~l~~~~p-------t~~~la~a~~~el~~~i~~l 81 (161)
T 4e9f_A 33 KLLIATIFLNRTSGK----------------MAIPVLWKFLEKYP-------SAEVARTADWRDVSELLKPL 81 (161)
T ss_dssp HHHHHHHHTTTSCHH----------------HHHHHHHHHHHHSC-------SHHHHTTSCHHHHHHHHGGG
T ss_pred HHHHHHHHHhhCcHH----------------HHHHHHHHHHHHCC-------CHHHHhccChHhHHhHhhhc
Confidence 334456667777765 58899999999995 35667888999999999887
Done!