Query 042047
Match_columns 83
No_of_seqs 104 out of 453
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 13:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 9.3E-41 2E-45 240.7 0.0 80 1-80 116-209 (215)
2 PF00564 PB1: PB1 domain; Int 97.8 9.3E-05 2E-09 45.1 5.3 56 8-69 14-70 (84)
3 smart00666 PB1 PB1 domain. Pho 97.6 0.00049 1.1E-08 41.9 6.6 56 8-69 13-69 (81)
4 cd05992 PB1 The PB1 domain is 97.5 0.00041 8.8E-09 42.0 5.8 55 9-69 13-69 (81)
5 cd06409 PB1_MUG70 The MUG70 pr 97.2 0.00098 2.1E-08 43.0 5.2 50 5-57 8-59 (86)
6 cd06407 PB1_NLP A PB1 domain i 97.2 0.0012 2.6E-08 41.9 5.4 44 9-57 13-56 (82)
7 cd06401 PB1_TFG The PB1 domain 97.1 0.0033 7.2E-08 40.4 7.0 56 17-75 22-80 (81)
8 cd06398 PB1_Joka2 The PB1 doma 96.8 0.004 8.8E-08 40.2 5.3 49 15-70 24-72 (91)
9 cd06403 PB1_Par6 The PB1 domai 96.8 0.0044 9.6E-08 39.8 5.3 56 9-70 15-71 (80)
10 cd06396 PB1_NBR1 The PB1 domai 96.8 0.0052 1.1E-07 39.3 5.6 41 9-57 15-55 (81)
11 cd06397 PB1_UP1 Uncharacterize 96.1 0.021 4.6E-07 36.8 5.2 58 7-70 11-69 (82)
12 cd06402 PB1_p62 The PB1 domain 96.0 0.023 5E-07 36.7 5.3 44 10-58 21-64 (87)
13 cd06404 PB1_aPKC PB1 domain is 95.8 0.027 6E-07 36.3 4.8 41 12-57 16-56 (83)
14 cd06408 PB1_NoxR The PB1 domai 92.5 0.33 7.2E-06 31.3 4.5 43 8-58 14-56 (86)
15 cd06399 PB1_P40 The PB1 domain 91.2 0.46 1E-05 31.2 4.1 39 10-56 22-60 (92)
16 cd06395 PB1_Map2k5 PB1 domain 78.8 4.5 9.8E-05 26.4 3.9 49 2-57 9-57 (91)
17 PF10411 DsbC_N: Disulfide bon 66.4 6 0.00013 23.0 2.2 17 43-59 34-50 (57)
18 PRK11430 putative CoA-transfer 54.8 10 0.00023 29.6 2.3 65 6-72 196-270 (381)
19 PF11454 DUF3016: Protein of u 54.2 44 0.00095 23.2 5.1 52 19-76 29-82 (141)
20 PF06463 Mob_synth_C: Molybden 50.6 48 0.001 22.0 4.7 67 10-77 17-84 (128)
21 cd06410 PB1_UP2 Uncharacterize 49.9 15 0.00033 23.8 2.1 26 8-33 25-50 (97)
22 cd06406 PB1_P67 A PB1 domain i 49.8 33 0.00071 21.8 3.6 52 12-69 17-69 (80)
23 PF04809 HupH_C: HupH hydrogen 47.9 21 0.00045 23.9 2.6 66 7-72 25-113 (120)
24 PRK13361 molybdenum cofactor b 46.0 65 0.0014 24.3 5.3 72 4-77 192-267 (329)
25 PF12108 SF3a60_bindingd: Spli 45.7 3.3 7.3E-05 21.6 -1.2 17 56-72 4-20 (28)
26 PF14847 Ras_bdg_2: Ras-bindin 42.8 91 0.002 20.5 5.0 56 6-65 11-70 (105)
27 PF14688 DUF4461: Domain of un 42.0 19 0.0004 27.8 1.9 30 40-69 80-117 (313)
28 PF02013 CBM_10: Cellulose or 41.8 7.4 0.00016 21.3 -0.3 12 43-54 16-27 (36)
29 PF07867 DUF1654: Protein of u 40.4 45 0.00098 20.9 3.1 20 15-34 2-21 (73)
30 PF09840 DUF2067: Uncharacteri 39.4 22 0.00047 25.7 1.8 30 39-72 97-126 (190)
31 PF07521 RMMBL: RNA-metabolisi 36.7 46 0.001 18.1 2.5 21 8-28 10-30 (43)
32 COG0219 CspR Predicted rRNA me 36.2 13 0.00028 26.4 0.2 70 3-76 49-126 (155)
33 PF14560 Ubiquitin_2: Ubiquiti 35.4 1E+02 0.0022 18.6 4.3 30 14-49 22-51 (87)
34 PF08340 DUF1732: Domain of un 34.1 16 0.00034 23.7 0.3 11 3-13 35-45 (87)
35 PF14593 PH_3: PH domain; PDB: 33.7 26 0.00057 23.0 1.3 23 42-65 38-60 (104)
36 COG3286 Uncharacterized protei 33.2 28 0.0006 25.9 1.5 30 39-72 100-129 (204)
37 KOG3938 RGS-GAIP interacting p 32.9 1E+02 0.0022 24.3 4.6 67 2-78 62-137 (334)
38 cd08905 START_STARD1-like Chol 32.4 1.1E+02 0.0023 21.8 4.4 41 16-60 4-45 (209)
39 PF13778 DUF4174: Domain of un 29.5 1.6E+02 0.0036 19.1 4.8 24 39-62 77-100 (118)
40 PF10114 PocR: Sensory domain 29.4 1E+02 0.0022 20.5 3.7 30 40-70 21-50 (173)
41 KOG3579 Predicted E3 ubiquitin 28.2 32 0.0007 27.2 1.2 54 16-69 18-80 (352)
42 PF12102 DUF3578: Domain of un 27.5 87 0.0019 22.2 3.2 34 2-35 151-184 (188)
43 COG5142 OXR1 Oxidation resista 26.8 1.1E+02 0.0024 22.7 3.7 19 38-56 87-105 (212)
44 PF15306 LIN37: LIN37 25.5 25 0.00055 24.0 0.2 23 6-29 21-43 (148)
45 PF09865 DUF2092: Predicted pe 25.3 48 0.001 24.2 1.6 33 38-76 138-173 (214)
46 PF14132 DUF4299: Domain of un 25.1 61 0.0013 25.2 2.2 29 40-68 244-278 (304)
47 cd04369 Bromodomain Bromodomai 25.0 59 0.0013 18.9 1.8 30 6-35 48-77 (99)
48 COG1561 Uncharacterized stress 24.5 23 0.00049 27.5 -0.2 11 2-12 237-247 (290)
49 PF03625 DUF302: Domain of unk 24.3 39 0.00085 19.4 0.8 16 41-56 46-61 (65)
50 PRK10543 superoxide dismutase; 24.2 1.6E+02 0.0034 21.0 4.1 33 19-51 91-132 (193)
51 PHA01548 hypothetical protein 23.7 80 0.0017 22.5 2.4 22 40-61 103-140 (167)
52 PF05423 Mycobact_memb: Mycoba 23.5 81 0.0017 21.7 2.4 24 39-62 62-87 (140)
53 cd01262 PH_PDK1 3-Phosphoinosi 22.4 78 0.0017 20.5 2.0 22 41-63 25-46 (89)
54 KOG3606 Cell polarity protein 22.3 2E+02 0.0044 22.9 4.6 53 11-69 35-88 (358)
55 cd06394 PBP1_iGluR_Kainate_KA1 22.0 97 0.0021 23.6 2.8 35 12-51 112-146 (333)
56 cd03772 MATH_HAUSP Herpesvirus 21.9 86 0.0019 20.3 2.2 19 51-77 21-39 (137)
57 PRK03525 crotonobetainyl-CoA:c 21.6 71 0.0015 25.2 2.0 26 45-71 238-266 (405)
58 KOG2949 Ketopantoate hydroxyme 21.6 39 0.00085 26.2 0.6 16 49-64 96-111 (306)
59 PF09676 TraV: Type IV conjuga 21.5 73 0.0016 20.4 1.8 20 40-59 91-110 (119)
60 cd05141 Barstar_evA4336-like B 21.2 1.1E+02 0.0024 18.6 2.5 24 8-31 1-24 (81)
61 PRK00745 4-oxalocrotonate taut 20.8 1.6E+02 0.0035 16.3 3.0 35 18-57 21-55 (62)
62 PF02777 Sod_Fe_C: Iron/mangan 20.6 2.3E+02 0.0051 17.8 4.6 35 15-54 15-49 (106)
63 PLN02951 Molybderin biosynthes 20.6 2.6E+02 0.0056 21.8 4.9 60 15-77 249-312 (373)
64 cd06411 PB1_p51 The PB1 domain 20.4 2.4E+02 0.0052 17.8 4.0 50 13-68 14-66 (78)
65 KOG4540 Putative lipase essent 20.3 49 0.0011 26.6 0.9 16 47-63 149-164 (425)
66 COG5153 CVT17 Putative lipase 20.3 49 0.0011 26.6 0.9 16 47-63 149-164 (425)
67 PF02845 CUE: CUE domain; Int 20.3 56 0.0012 17.4 0.9 14 18-31 1-14 (42)
68 PF04149 DUF397: Domain of unk 20.3 49 0.0011 19.2 0.7 23 48-70 34-56 (56)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=9.3e-41 Score=240.68 Aligned_cols=80 Identities=45% Similarity=0.909 Sum_probs=0.0
Q ss_pred CCCcceeeeeccCCCCCHHHHHHHHHHHH---hhh----------hhcc-cCCCceEEEEEcCCCCeEEecCCChhHHhh
Q 042047 1 MEGVGIARKINLSLYNSFETLANSLIHMF---ATY----------QKSE-KRGVRYTLTYQDKEGDWLIAGDVPWQTFIE 66 (83)
Q Consensus 1 MeG~~igRkiDL~~~~sY~~L~~~L~~MF---~~~----------~~~~-~~~~~~~l~Y~D~eGD~mlvGD~PW~~F~~ 66 (83)
|||+||||||||++|+||++|+.+|++|| .+. +..+ .++++|+|||+|+||||||||||||++||+
T Consensus 116 mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~ 195 (215)
T PF02309_consen 116 MDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVK 195 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHH
Confidence 89999999999999999999999999999 544 1111 256799999999999999999999999999
Q ss_pred ccceeEEeeCCccc
Q 042047 67 SVQRLEILRCGAVE 80 (83)
Q Consensus 67 ~vkrl~I~~~~~~~ 80 (83)
+||||+|++.+|+.
T Consensus 196 ~vkRl~I~~~~e~~ 209 (215)
T PF02309_consen 196 SVKRLRIMKSSEAK 209 (215)
T ss_dssp --------------
T ss_pred HhhccEEecHHHhc
Confidence 99999999999875
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.75 E-value=9.3e-05 Score=45.13 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=47.3
Q ss_pred eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhccc
Q 042047 8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESVQ 69 (83)
Q Consensus 8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~vk 69 (83)
|.+.+..--+|++|...++..|+.. ...+.+.|.|.||||..+-. .=|++.+..++
T Consensus 14 ~~~~~~~~~s~~~L~~~i~~~~~~~------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 14 RIISLPSDVSFDDLRSKIREKFGLL------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp EEEEECSTSHHHHHHHHHHHHHTTS------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence 3478888889999999999999986 36899999999999998874 45777777765
No 3
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.56 E-value=0.00049 Score=41.88 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=45.5
Q ss_pred eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhccc
Q 042047 8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESVQ 69 (83)
Q Consensus 8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~vk 69 (83)
|.+-+..--+|++|.+++.+.|+... ..+.+.|+|.|||+..+.+ .=|++-+..++
T Consensus 13 ~~~~~~~~~s~~dL~~~i~~~~~~~~------~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 13 RRLSVPRDISFEDLRSKVAKRFGLDN------QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCC------CCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence 66777778899999999999999632 5789999999999987765 56777666655
No 4
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=97.52 E-value=0.00041 Score=41.97 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=44.6
Q ss_pred eeccC-CCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhccc
Q 042047 9 KINLS-LYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESVQ 69 (83)
Q Consensus 9 kiDL~-~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~vk 69 (83)
.+-+. ..-+|++|...|.+.|+... ..+.+.|.|.|||+..+.+ .=|++-++.++
T Consensus 13 ~~~~~~~~~s~~~L~~~i~~~~~~~~------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 13 RFVVVSRSISFEDLRSKIAEKFGLDA------VSFKLKYPDEDGDLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEEEecCCCCHHHHHHHHHHHhCCCC------CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHh
Confidence 33444 77899999999999999743 5889999999999999887 56777766655
No 5
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=97.22 E-value=0.00098 Score=43.02 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=39.2
Q ss_pred ceeeeecc--CCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047 5 GIARKINL--SLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG 57 (83)
Q Consensus 5 ~igRkiDL--~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG 57 (83)
|-||.+=+ ....|+.+|..+..+-|++.... ...+.|.|.|.||||.++-
T Consensus 8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~---~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDFE---THLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHHHHhCCcccc---CCcccEEEEcCCCCEEEEe
Confidence 34555444 44789999999999999886532 4789999999999998864
No 6
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=97.21 E-value=0.0012 Score=41.85 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=35.9
Q ss_pred eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047 9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG 57 (83)
Q Consensus 9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG 57 (83)
.+-|..--+|++|.+++.+.|.+.. ...+.|-|.|.||||..+-
T Consensus 13 r~~l~~~~~~~~L~~~i~~r~~~~~-----~~~f~LkY~Ddegd~v~lt 56 (82)
T cd06407 13 RFRLPPSWGFTELKQEIAKRFKLDD-----MSAFDLKYLDDDEEWVLLT 56 (82)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCC-----CCeeEEEEECCCCCeEEee
Confidence 4455555699999999999999742 2689999999999998763
No 7
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=97.14 E-value=0.0033 Score=40.35 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecCC---ChhHHhhccceeEEee
Q 042047 17 SFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDV---PWQTFIESVQRLEILR 75 (83)
Q Consensus 17 sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~---PW~~F~~~vkrl~I~~ 75 (83)
+|.+|...+.+.|...- .....+.+.|.|.|||+.-+.+- -|..=+...++|+|..
T Consensus 22 t~~~L~~~v~~~F~~~~---~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~~~~l~~~~ 80 (81)
T cd06401 22 TYDELLLMMQRVFRGKL---GSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSRILKLTLFV 80 (81)
T ss_pred cHHHHHHHHHHHhcccc---CCcccEEEEEECCCCCEEEeccHHHHHHHHhcCcceEEEEec
Confidence 99999999999998432 23479999999999999999864 5665566667777653
No 8
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.82 E-value=0.004 Score=40.22 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecCCChhHHhhccce
Q 042047 15 YNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQR 70 (83)
Q Consensus 15 ~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~PW~~F~~~vkr 70 (83)
--+|++|.+++++.|.+.. ..++.+.|.|.+|||..+-. =+++..++.+
T Consensus 24 d~~~~~L~~kI~~~f~l~~-----~~~~~l~Y~Dedgd~V~l~~--D~DL~~a~~~ 72 (91)
T cd06398 24 DLNMDGLREKVEELFSLSP-----DADLSLTYTDEDGDVVTLVD--DNDLTDAIQY 72 (91)
T ss_pred CCCHHHHHHHHHHHhCCCC-----CCcEEEEEECCCCCEEEEcc--HHHHHHHHHH
Confidence 5799999999999998733 37999999999999998853 3444444443
No 9
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=96.79 E-value=0.0044 Score=39.75 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=43.0
Q ss_pred eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec-CCChhHHhhccce
Q 042047 9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG-DVPWQTFIESVQR 70 (83)
Q Consensus 9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG-D~PW~~F~~~vkr 70 (83)
.+|.+...+|+++++-|+.+|.+.. ..+.|.|.|.+||.+-+- |+-+..=+++++.
T Consensus 15 sl~r~~~~~f~ef~~ll~~lH~l~~------~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~p 71 (80)
T cd06403 15 SLDRNKPGKFEDFYKLLEHLHHIPN------VDFLIGYTDPHGDLLPINNDDNFLKALSSANP 71 (80)
T ss_pred EeccccCcCHHHHHHHHHHHhCCCC------CcEEEEEeCCCCCEecccCcHHHHHHHHcCCC
Confidence 4566677999999999999999854 689999999999999774 3444444445443
No 10
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.79 E-value=0.0052 Score=39.33 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=34.5
Q ss_pred eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047 9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG 57 (83)
Q Consensus 9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG 57 (83)
+++.+..-+|++|.+++.++|++. .+.|.|.|.||||.++-
T Consensus 15 ~~~~~~~~~~~~L~~ev~~rf~l~--------~f~lKYlDde~e~v~ls 55 (81)
T cd06396 15 LVSDSENTTWASVEAMVKVSFGLN--------DIQIKYVDEENEEVSVN 55 (81)
T ss_pred EecCCCCCCHHHHHHHHHHHhCCC--------cceeEEEcCCCCEEEEE
Confidence 344444679999999999999984 78999999999998763
No 11
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=96.08 E-value=0.021 Score=36.79 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=45.1
Q ss_pred eeeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhccce
Q 042047 7 ARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESVQR 70 (83)
Q Consensus 7 gRkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~vkr 70 (83)
-|++.-..-=+|.+|.++|+.+|.+... .+.|+|.|.+||..-+-+ .--++|.+-..+
T Consensus 11 ~RRf~~~~~pt~~~L~~kl~~Lf~lp~~------~~~vtYiDeD~D~ITlssd~eL~d~~~~~~~ 69 (82)
T cd06397 11 TRRIVFPDIPTWEALASKLENLYNLPEI------KVGVTYIDNDNDEITLSSNKELQDFYRLSHR 69 (82)
T ss_pred eEEEecCCCccHHHHHHHHHHHhCCChh------HeEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence 4777777788999999999999998542 389999999999876554 466666654444
No 12
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.03 E-value=0.023 Score=36.72 Aligned_cols=44 Identities=25% Similarity=0.515 Sum_probs=35.4
Q ss_pred eccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC
Q 042047 10 INLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD 58 (83)
Q Consensus 10 iDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD 58 (83)
+|=....+|++|...+.++|.... ...+++.|.|.|||..-+..
T Consensus 21 l~~~~~~s~~~L~~~V~~~f~~l~-----~~~ftlky~DeeGDlvtIss 64 (87)
T cd06402 21 IDEDVSTSYEYLVEKVAAVFPSLR-----GKNFQLFWKDEEGDLVAFSS 64 (87)
T ss_pred ecCCCCcCHHHHHHHHHHHccccC-----CCcEEEEEECCCCCEEeecC
Confidence 344666799999999999996432 36899999999999987754
No 13
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=95.78 E-value=0.027 Score=36.29 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=34.1
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047 12 LSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG 57 (83)
Q Consensus 12 L~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG 57 (83)
+...-+|++|.+++.+||.... ...+++.|.|.|||.--+.
T Consensus 16 ~d~~~s~e~L~~~v~~~c~~~~-----~q~ft~kw~DEEGDp~tiS 56 (83)
T cd06404 16 IDPSISLEELCNEVRDMCRFHN-----DQPFTLKWIDEEGDPCTIS 56 (83)
T ss_pred cCCCcCHHHHHHHHHHHhCCCC-----CCcEEEEEECCCCCceeec
Confidence 3446789999999999999743 3689999999999987664
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=92.46 E-value=0.33 Score=31.33 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=35.8
Q ss_pred eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC
Q 042047 8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD 58 (83)
Q Consensus 8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD 58 (83)
|.|-+..-=+|++|...+.++|++. ..++|-|.|. ||..-+++
T Consensus 14 ~~i~v~~~i~f~dL~~kIrdkf~~~-------~~~~iKykDE-GD~iti~s 56 (86)
T cd06408 14 RYIMIGPDTGFADFEDKIRDKFGFK-------RRLKIKMKDD-GDMITMGD 56 (86)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC-------CceEEEEEcC-CCCccccC
Confidence 4455566668999999999999983 4789999999 99988876
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=91.24 E-value=0.46 Score=31.17 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=32.3
Q ss_pred eccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEe
Q 042047 10 INLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIA 56 (83)
Q Consensus 10 iDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlv 56 (83)
=||+..-+|.+|.....+-|.. .+..+-|+|.|||..-+
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~--------~dIaLNYrD~EGDLIRl 60 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQR--------EDIALNYRDAEGDLIRL 60 (92)
T ss_pred cccccCccHHHHHHHHHHHhch--------hheeeeeecCCCCEEEE
Confidence 3788889999999998888875 35689999999998644
No 16
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=78.83 E-value=4.5 Score=26.37 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=36.6
Q ss_pred CCcceeeeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047 2 EGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG 57 (83)
Q Consensus 2 eG~~igRkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG 57 (83)
+|.++-=+|+...+=++.++...+.+...... --..-|+|.+||..-|-
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT-------~tAFeYEDE~gDRITVR 57 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEAT-------TTAFEYEDEDGDRITVR 57 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhccccc-------ccceeeccccCCeeEec
Confidence 46667777887777889999888877655332 33677999999998773
No 17
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=66.37 E-value=6 Score=22.95 Aligned_cols=17 Identities=35% Similarity=0.839 Sum_probs=14.7
Q ss_pred EEEEEcCCCCeEEecCC
Q 042047 43 TLTYQDKEGDWLIAGDV 59 (83)
Q Consensus 43 ~l~Y~D~eGD~mlvGD~ 59 (83)
.++|.|.+|..+++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 69999999999999973
No 18
>PRK11430 putative CoA-transferase; Provisional
Probab=54.77 E-value=10 Score=29.59 Aligned_cols=65 Identities=6% Similarity=0.197 Sum_probs=36.6
Q ss_pred eeeeeccCCCCCHHHHHHHHHHHHhhhhhcc-c--CC----CceEEEEEcCCCCeEEec---CCChhHHhhccceeE
Q 042047 6 IARKINLSLYNSFETLANSLIHMFATYQKSE-K--RG----VRYTLTYQDKEGDWLIAG---DVPWQTFIESVQRLE 72 (83)
Q Consensus 6 igRkiDL~~~~sY~~L~~~L~~MF~~~~~~~-~--~~----~~~~l~Y~D~eGD~mlvG---D~PW~~F~~~vkrl~ 72 (83)
-|+.||++++.+--.+.......+...+... . +. .-| =+|+-+|| |+.++ +--|+.||..+.+--
T Consensus 196 ~Gq~VdvSl~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~p~-~~y~~~DG-~i~i~~~~~~~w~~l~~~lg~~~ 270 (381)
T PRK11430 196 RGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPF-DVFDTQDK-PITICCGNDKLFSALCQALELTE 270 (381)
T ss_pred CeeEEEeeHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-CceEcCCC-cEEEEeCCHHHHHHHHHHhCCcc
Confidence 4899999998764433222221222111110 0 10 112 36999999 77764 447999998877643
No 19
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=54.18 E-value=44 Score=23.24 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhhhc-ccCCCceEEEEEcCCCCeEEecCC-ChhHHhhccceeEEeeC
Q 042047 19 ETLANSLIHMFATYQKS-EKRGVRYTLTYQDKEGDWLIAGDV-PWQTFIESVQRLEILRC 76 (83)
Q Consensus 19 ~~L~~~L~~MF~~~~~~-~~~~~~~~l~Y~D~eGD~mlvGD~-PW~~F~~~vkrl~I~~~ 76 (83)
+....+|++.|....+. ..++....|+-.|- =|+||+ ||- -..+.-|||++.
T Consensus 29 ~~~~~~L~~~~~~la~~~Lp~gq~L~v~VtDv----DLAG~~~P~~--~~~~~dvRvvkd 82 (141)
T PF11454_consen 29 ERVFAQLTKHFQKLAAKYLPPGQTLEVTVTDV----DLAGDVEPFW--GSGANDVRVVKD 82 (141)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEEEEec----ccCcccccCc--CCCCCcEEEEcc
Confidence 34567888888875554 34556667777766 488987 732 245677777764
No 20
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=50.62 E-value=48 Score=22.04 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=32.3
Q ss_pred eccCCCCCHHHHHHHHHHHHhhhhhcc-cCCCceEEEEEcCCCCeEEecCCChhHHhhccceeEEeeCC
Q 042047 10 INLSLYNSFETLANSLIHMFATYQKSE-KRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCG 77 (83)
Q Consensus 10 iDL~~~~sY~~L~~~L~~MF~~~~~~~-~~~~~~~l~Y~D~eGD~mlvGD~PW~~F~~~vkrl~I~~~~ 77 (83)
.--..|-+++++...|++-+....... ..+.--.....+..|..=++.-+.= .||.+|.||||-+..
T Consensus 17 ~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~pa~~y~~~g~~g~vG~I~~~s~-~FC~~CNRiRlTsdG 84 (128)
T PF06463_consen 17 WFEEEFVPAQEILERLEERYELLPSEKRPNGPARYYRIPGGKGRVGFISPVSN-PFCSSCNRIRLTSDG 84 (128)
T ss_dssp B-TTTB--HHHHHHHHHHHS-EEEE--SST-SSEEEEETTT--EEEEE-TTTS---GGG--EEEE-TTS
T ss_pred chhhcCcCHHHHHHHHHHhCCccccccccCCcceEEEECCCCcEEEEEeCCCC-CCCCcCCEEEEccCc
Confidence 344678889999999999988744321 1112222222344444555543332 399999999998765
No 21
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=49.92 E-value=15 Score=23.80 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=20.9
Q ss_pred eeeccCCCCCHHHHHHHHHHHHhhhh
Q 042047 8 RKINLSLYNSFETLANSLIHMFATYQ 33 (83)
Q Consensus 8 RkiDL~~~~sY~~L~~~L~~MF~~~~ 33 (83)
|-|.+..--||.+|.++|..+|++..
T Consensus 25 r~i~V~r~~s~~el~~kl~~~~~~~~ 50 (97)
T cd06410 25 RIVSVDRSISFKELVSKLSELFGAGV 50 (97)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 55666666799999999999998743
No 22
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=49.82 E-value=33 Score=21.85 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=38.4
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCC-CeEEecCCChhHHhhccc
Q 042047 12 LSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEG-DWLIAGDVPWQTFIESVQ 69 (83)
Q Consensus 12 L~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eG-D~mlvGD~PW~~F~~~vk 69 (83)
...=-+|.+|...+.+-+.+.. ..-+|-|.|.+. +.-.++|.-++.=.+.|+
T Consensus 17 vp~~~~y~~L~~ki~~kLkl~~------e~i~LsYkde~s~~~v~l~d~dle~aws~~~ 69 (80)
T cd06406 17 VARGLSYATLLQKISSKLELPA------EHITLSYKSEASGEDVILSDTNMEDVWSQAK 69 (80)
T ss_pred cCCCCCHHHHHHHHHHHhCCCc------hhcEEEeccCCCCCccCcChHHHHHHHHhhc
Confidence 3444589999999999998853 356999998774 333448888887777665
No 23
>PF04809 HupH_C: HupH hydrogenase expression protein, C-terminal conserved region; InterPro: IPR006894 This entry represents the C-terminal conserved domain found in bacterial hydrogenase expression proteins (HupH), which are necessary for hydrogenase synthesis. The precise function of HupH is unknown [].; PDB: 3SB1_A.
Probab=47.88 E-value=21 Score=23.95 Aligned_cols=66 Identities=24% Similarity=0.274 Sum_probs=35.0
Q ss_pred eeeeccCCCCCHHHHHHHHHHHHhhhh---------hc---c-cCCCceEEEEEcCCC----CeEEecCCChh------H
Q 042047 7 ARKINLSLYNSFETLANSLIHMFATYQ---------KS---E-KRGVRYTLTYQDKEG----DWLIAGDVPWQ------T 63 (83)
Q Consensus 7 gRkiDL~~~~sY~~L~~~L~~MF~~~~---------~~---~-~~~~~~~l~Y~D~eG----D~mlvGD~PW~------~ 63 (83)
.+.|||+..-==.+=...|.+..|--. .. + .-..-|.+.|.|.+| |.+-||++|=- +
T Consensus 25 ~~~I~L~~lPLs~~D~~~L~~~LGeGeVsi~~~g~g~~ri~eT~~~gVWrV~~~n~~~~~i~d~iEV~~vP~~v~aa~eD 104 (120)
T PF04809_consen 25 PHVINLTLLPLSPADRALLDETLGEGEVSILSRGYGNCRIQETVFAGVWRVRYFNSDGRLILDTIEVGDVPEVVRAAPED 104 (120)
T ss_dssp -EEEEGGGS---HHHHHHHHHHH---SEEEEEE---EEEEEE-SSTTEEEEEEE-TTS-EEEEEEEESSS-GGGS--HHH
T ss_pred CeEEEecCCCCCHHHHHHHHHHcCCCcEEEEEcCCCCEEEEEecCCCEEEEEEECCCCCEeeeeEEEeCCcHHHhccHhh
Confidence 356777766422233344555554211 00 0 135689999999996 66789999953 5
Q ss_pred HhhccceeE
Q 042047 64 FIESVQRLE 72 (83)
Q Consensus 64 F~~~vkrl~ 72 (83)
|..|+.||+
T Consensus 105 ~~ds~~rL~ 113 (120)
T PF04809_consen 105 LADSAARLR 113 (120)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHHHh
Confidence 666666654
No 24
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=46.05 E-value=65 Score=24.26 Aligned_cols=72 Identities=8% Similarity=0.024 Sum_probs=43.0
Q ss_pred cceeeee--ccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEE--cCCCCeEEecCCChhHHhhccceeEEeeCC
Q 042047 4 VGIARKI--NLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQ--DKEGDWLIAGDVPWQTFIESVQRLEILRCG 77 (83)
Q Consensus 4 ~~igRki--DL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~--D~eGD~mlvGD~PW~~F~~~vkrl~I~~~~ 77 (83)
.|+|+.- .-..+=+.++....|+..+......... .+..-.|+ +..|-+=++.-+... ||.+|.||||-+..
T Consensus 192 mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~I~~~s~~-fC~~Cnr~rlt~~G 267 (329)
T PRK13361 192 MPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRT-GGPARYYTMADSPIHIGFISPHSHN-FCHECNRVRVTAEG 267 (329)
T ss_pred ccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCC-CCCCeEEEECCCCeEEEEEcCCCcc-ccccCCeEEEccCC
Confidence 3556522 2345567888989998887632221111 11122343 445556566655565 99999999998765
No 25
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=45.68 E-value=3.3 Score=21.56 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=11.8
Q ss_pred ecCCChhHHhhccceeE
Q 042047 56 AGDVPWQTFIESVQRLE 72 (83)
Q Consensus 56 vGD~PW~~F~~~vkrl~ 72 (83)
-|..||++|-+-+|.|+
T Consensus 4 s~~d~f~eFY~rlk~Ik 20 (28)
T PF12108_consen 4 SGGDPFSEFYERLKEIK 20 (28)
T ss_dssp -S--HHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 47889999998888764
No 26
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=42.85 E-value=91 Score=20.49 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=34.7
Q ss_pred eeeeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcC----CCCeEEecCCChhHHh
Q 042047 6 IARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDK----EGDWLIAGDVPWQTFI 65 (83)
Q Consensus 6 igRkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~----eGD~mlvGD~PW~~F~ 65 (83)
.-|+||.+-..+.++.....-+-|+..+. ...|.....|. .....++.|+=--.-|
T Consensus 11 ~tk~VNV~~c~~a~eI~~rvLKKfg~~~~----~~~~~~~v~d~~~~~~~~~~~LsD~EL~~IC 70 (105)
T PF14847_consen 11 STKTVNVSGCFNAQEIKRRVLKKFGLPEH----PRNYCFYVLDGESPDPSNCRPLSDVELVTIC 70 (105)
T ss_dssp EEEEEE--S--HHHHHHHHHHHHHTSS------CCCEEEEEE-S-----SSEEEE-SSHHHHHH
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCccc----cccceEEEecccccccccceECcHHHHHHHH
Confidence 35899999999999999999999998772 35676666666 5667777776333333
No 27
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=41.97 E-value=19 Score=27.82 Aligned_cols=30 Identities=30% Similarity=0.760 Sum_probs=21.7
Q ss_pred CceEEEEE-----cCCCCeEE-ecCCC--hhHHhhccc
Q 042047 40 VRYTLTYQ-----DKEGDWLI-AGDVP--WQTFIESVQ 69 (83)
Q Consensus 40 ~~~~l~Y~-----D~eGD~ml-vGD~P--W~~F~~~vk 69 (83)
.+.+|+|- |.+|++|| +|||| |..|++.+.
T Consensus 80 ~G~tvvF~~~sGv~~~G~v~L~~~Dv~~~W~~~l~~l~ 117 (313)
T PF14688_consen 80 KGRTVVFGDFSGVSLDGHVMLGTGDVPHQWTSFLERLP 117 (313)
T ss_pred CCCEEEecCCCccCCCCCEEecCCCcHHHHHHHHHhCC
Confidence 46677775 56788776 68876 888887665
No 28
>PF02013 CBM_10: Cellulose or protein binding domain; InterPro: IPR002883 This domain is found in two distinct sets of proteins with different functions. Those found in aerobic bacteria bind cellulose (or other carbohydrates); but in anaerobic fungi they are protein binding domains, referred to as dockerin domains or docking domains. They are believed to be responsible for the assembly of a multiprotein cellulase/hemicellulase complex, similar to the cellulosome found in certain anaerobic bacteria. The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. In anaerobes, the degradation is carried out by a high molecular weight, multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved 40-residue dockerin domain, which functions to bind the enzyme to a cohesin domain within the scaffoldin protein [, ]. In anaerobic bacteria that degrade plant cell walls, exemplified by Clostridium thermocellum, the dockerin domains of the catalytic polypeptides can bind equally well to any cohesin from the same organism. More recently, anaerobic fungi, typified by Piromyces equi, have been suggested to also synthesise a cellulosome complex, although the dockerin sequences of the bacterial and fungal enzymes are completely different []. For example, the fungal enzymes contain one, two or three copies of the dockerin sequence in tandem within the catalytic polypeptide. In contrast, all the C. thermocellum cellulosome catalytic components contain a single dockerin domain. The anaerobic bacterial dockerins are homologous to EF hands (calcium-binding motifs) and require calcium for activity whereas the fungal dockerin does not require calcium. Finally, the interaction between cohesin and dockerin appears to be species specific in bacteria, there is almost no species specificity of binding within fungal species and no identified sites that distinguish different species. The structure of dockerin from P. equi contains two helical stretches and four short beta-strands which form an antiparallel sheet structure adjacent to an additional short twisted parallel strand. The N- and C-termini are adjacent to each other. Aerobic bacteria contain related regions, however these appear to function as cellulose/carbohydrate binding domains.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2J4M_A 2J4N_A 1E8R_A 1QLD_A 1E8P_A 1E8Q_A.
Probab=41.85 E-value=7.4 Score=21.28 Aligned_cols=12 Identities=33% Similarity=0.941 Sum_probs=8.8
Q ss_pred EEEEEcCCCCeE
Q 042047 43 TLTYQDKEGDWL 54 (83)
Q Consensus 43 ~l~Y~D~eGD~m 54 (83)
.+.|+|.+|+|=
T Consensus 16 ~v~y~d~~g~WG 27 (36)
T PF02013_consen 16 EVVYTDDDGGWG 27 (36)
T ss_dssp --SEEETTEEEE
T ss_pred ceEEcCCCCCEe
Confidence 789999999983
No 29
>PF07867 DUF1654: Protein of unknown function (DUF1654); InterPro: IPR012449 This entry is represented by Bacteriophage F116 (Pseudomonas phage F116), Orf28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of proteins from the Pseudomonadaceae.
Probab=40.39 E-value=45 Score=20.90 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHhhhhh
Q 042047 15 YNSFETLANSLIHMFATYQK 34 (83)
Q Consensus 15 ~~sY~~L~~~L~~MF~~~~~ 34 (83)
.++|+.|..++.+|-.....
T Consensus 2 mt~ye~L~~Rvq~~Insp~A 21 (73)
T PF07867_consen 2 MTAYERLGLRVQRMINSPKA 21 (73)
T ss_pred CCHHHHHHHHHHHHHcChHh
Confidence 36899999999999886543
No 30
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=39.38 E-value=22 Score=25.72 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCeEEecCCChhHHhhccceeE
Q 042047 39 GVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLE 72 (83)
Q Consensus 39 ~~~~~l~Y~D~eGD~mlvGD~PW~~F~~~vkrl~ 72 (83)
..++..-|.+. -+..|.||+++++.+++|.
T Consensus 97 ~~G~~ae~~~~----~i~T~a~~eev~~l~~~Ls 126 (190)
T PF09840_consen 97 LLGYKAEYRED----VIKTDAPLEEVVELAERLS 126 (190)
T ss_pred hCCCeeEEeCC----eEEecCCHHHHHHHHHHHH
Confidence 36788888876 7889999999999999874
No 31
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=36.75 E-value=46 Score=18.05 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.3
Q ss_pred eeeccCCCCCHHHHHHHHHHH
Q 042047 8 RKINLSLYNSFETLANSLIHM 28 (83)
Q Consensus 8 RkiDL~~~~sY~~L~~~L~~M 28 (83)
-.+++|.|.++++|..-++.+
T Consensus 10 ~~~~fSgHad~~~L~~~i~~~ 30 (43)
T PF07521_consen 10 EQIDFSGHADREELLEFIEQL 30 (43)
T ss_dssp EESGCSSS-BHHHHHHHHHHH
T ss_pred EEEeecCCCCHHHHHHHHHhc
Confidence 368999999999999888877
No 32
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=36.18 E-value=13 Score=26.44 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=42.6
Q ss_pred CcceeeeeccCCCCCHHHHHHHHH---HHHhhhhhcccCCCceEEEEEcCCCCeEEecCCChh---HHhh--ccceeEEe
Q 042047 3 GVGIARKINLSLYNSFETLANSLI---HMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQ---TFIE--SVQRLEIL 74 (83)
Q Consensus 3 G~~igRkiDL~~~~sY~~L~~~L~---~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~PW~---~F~~--~vkrl~I~ 74 (83)
|-.+--+++|..|+|+++...+.. ++|....... ..| .-+....||+++-|-++=. +++. .-++|+|=
T Consensus 49 GlDY~~~~~l~~h~s~e~fl~~~~~~~rl~~~tt~~~---~~~-~~~~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIP 124 (155)
T COG0219 49 GLDYHEKASLTEHDSLEAFLEAEPIGGRLFALTTKGT---TTY-TDVSFQKGDYLLFGPESRGLPEEILDAAPDRCIRIP 124 (155)
T ss_pred ccchHhhcceEEeCCHHHHHhhccCCceEEEEEeccc---ccc-ccccCCCCCEEEECCCCCCCCHHHHHhCccceEEec
Confidence 455666899999999999999884 5665543321 111 1144456899999976321 2222 23357764
Q ss_pred eC
Q 042047 75 RC 76 (83)
Q Consensus 75 ~~ 76 (83)
..
T Consensus 125 m~ 126 (155)
T COG0219 125 MR 126 (155)
T ss_pred cC
Confidence 44
No 33
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=35.43 E-value=1e+02 Score=18.61 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcC
Q 042047 14 LYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDK 49 (83)
Q Consensus 14 ~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~ 49 (83)
..-.-.+|...|+.+||+.. +.-+|.|.+.
T Consensus 22 ~~~Tv~eLK~kl~~~~Gi~~------~~m~L~l~~~ 51 (87)
T PF14560_consen 22 KSITVSELKQKLEKLTGIPP------SDMRLQLKSD 51 (87)
T ss_dssp TTSBHHHHHHHHHHHHTS-T------TTEEEEEE-T
T ss_pred CCCCHHHHHHHHHHHhCCCc------ccEEEEEEec
Confidence 34577899999999999854 3446666633
No 34
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=34.07 E-value=16 Score=23.71 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=8.9
Q ss_pred CcceeeeeccC
Q 042047 3 GVGIARKINLS 13 (83)
Q Consensus 3 G~~igRkiDL~ 13 (83)
|.|+|||+|--
T Consensus 35 ~~~vGrkLdFl 45 (87)
T PF08340_consen 35 GEPVGRKLDFL 45 (87)
T ss_pred CCCCCCCCccc
Confidence 45999999964
No 35
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=33.68 E-value=26 Score=22.98 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCeEEecCCChhHHh
Q 042047 42 YTLTYQDKEGDWLIAGDVPWQTFI 65 (83)
Q Consensus 42 ~~l~Y~D~eGD~mlvGD~PW~~F~ 65 (83)
-+|.|.|.++...= |..||...+
T Consensus 38 PrL~Yvdp~~~~~K-GeI~~~~~l 60 (104)
T PF14593_consen 38 PRLFYVDPKKMVLK-GEIPWSKEL 60 (104)
T ss_dssp TEEEEEETTTTEEE-EEE--STT-
T ss_pred CEEEEEECCCCeEC-cEEecCCce
Confidence 48999999998655 999999653
No 36
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.16 E-value=28 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.539 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCeEEecCCChhHHhhccceeE
Q 042047 39 GVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLE 72 (83)
Q Consensus 39 ~~~~~l~Y~D~eGD~mlvGD~PW~~F~~~vkrl~ 72 (83)
..+|.+-|.+.+ +--+.||++|++.|++|.
T Consensus 100 ~~GyrVevr~~~----l~T~ap~~ev~E~vreLs 129 (204)
T COG3286 100 LLGYRVEVRGGE----LKTNAPWSEVVELVRELS 129 (204)
T ss_pred hCCceEEeeCce----eecCCCHHHHHHHHHHHH
Confidence 467888887665 778899999999998763
No 37
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.86 E-value=1e+02 Score=24.33 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=44.4
Q ss_pred CCcceeeeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEE--c--CCCCeEEecCCChhHHhh-----ccceeE
Q 042047 2 EGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQ--D--KEGDWLIAGDVPWQTFIE-----SVQRLE 72 (83)
Q Consensus 2 eG~~igRkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~--D--~eGD~mlvGD~PW~~F~~-----~vkrl~ 72 (83)
+|.|.|| +..|++-+||++.++.-|.+.... ++..+ + .|=+.||-|-.-.++|+= -.|-+.
T Consensus 62 HGSptg~---Ie~fsnv~ELY~kIAe~F~Is~~d-------IlfcTlNshKvDM~~llgGqigleDfiFAHvkGq~kEv~ 131 (334)
T KOG3938|consen 62 HGSPTGR---IEGFSNVRELYQKIAEAFDISPDD-------ILFCTLNSHKVDMKRLLGGQIGLEDFIFAHVKGQAKEVE 131 (334)
T ss_pred cCCccce---ecccccHHHHHHHHHHHhcCCccc-------eEEEecCCCcccHHHHhcCccChhhhhhhhhcCcceeEE
Confidence 5778887 467999999999999999985432 11111 1 223347777777777763 455666
Q ss_pred EeeCCc
Q 042047 73 ILRCGA 78 (83)
Q Consensus 73 I~~~~~ 78 (83)
|++..+
T Consensus 132 v~Ksed 137 (334)
T KOG3938|consen 132 VVKSED 137 (334)
T ss_pred EEeccc
Confidence 666554
No 38
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=32.37 E-value=1.1e+02 Score=21.76 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCHHHHHHH-HHHHHhhhhhcccCCCceEEEEEcCCCCeEEecCCC
Q 042047 16 NSFETLANS-LIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60 (83)
Q Consensus 16 ~sY~~L~~~-L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~P 60 (83)
.+|.++..+ ++++..+.. ...+|.+...+++|+....=.+|
T Consensus 4 ~~y~~~~~~~~~~~~~~~~----~~~~W~~~~~~~~gi~v~s~~~~ 45 (209)
T cd08905 4 MSYIKQGEEALQKSLSILQ----DQEGWKTEIVAENGDKVLSKVVP 45 (209)
T ss_pred HHHHHHHHHHHHHHHHHhc----cccCCEEEEecCCCCEEEEEEcC
Confidence 468877765 555555543 23689999999999988875454
No 39
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=29.45 E-value=1.6e+02 Score=19.10 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCeEEecCCChh
Q 042047 39 GVRYTLTYQDKEGDWLIAGDVPWQ 62 (83)
Q Consensus 39 ~~~~~l~Y~D~eGD~mlvGD~PW~ 62 (83)
...|.++-.++||-.++--..||.
T Consensus 77 ~~~f~~vLiGKDG~vK~r~~~p~~ 100 (118)
T PF13778_consen 77 PGGFTVVLIGKDGGVKLRWPEPID 100 (118)
T ss_pred CCceEEEEEeCCCcEEEecCCCCC
Confidence 567999999999999999888874
No 40
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=29.43 E-value=1e+02 Score=20.50 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCeEEecCCChhHHhhccce
Q 042047 40 VRYTLTYQDKEGDWLIAGDVPWQTFIESVQR 70 (83)
Q Consensus 40 ~~~~l~Y~D~eGD~mlvGD~PW~~F~~~vkr 70 (83)
.+..++-.|.+|..+ .--..|..||..++.
T Consensus 21 tgl~~~i~d~~G~~l-~~~~~~~~fC~~~~~ 50 (173)
T PF10114_consen 21 TGLSIVIVDPDGNPL-TQPSNFCPFCKLIRS 50 (173)
T ss_pred HCCcEEEEeCCCCEE-eeCCCchhhhhHHhc
Confidence 355777789999999 444689999976654
No 41
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.23 E-value=32 Score=27.24 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhhhhhccc---CCCce-EEEEEc--CCCCeEEecCCChh---HHhhccc
Q 042047 16 NSFETLANSLIHMFATYQKSEK---RGVRY-TLTYQD--KEGDWLIAGDVPWQ---TFIESVQ 69 (83)
Q Consensus 16 ~sY~~L~~~L~~MF~~~~~~~~---~~~~~-~l~Y~D--~eGD~mlvGD~PW~---~F~~~vk 69 (83)
+.|......++.||........ ..+.+ -+-|+. .+|+|.+.||.||. .|.+.|-
T Consensus 18 n~ya~~~~~aaa~~~~al~~~G~~l~ss~~a~le~e~~~~~~~~rq~gdll~~~v~~f~e~~~ 80 (352)
T KOG3579|consen 18 NVYAAVSGVAAAMNADALADNGRSLSSSGFAYLEYENRHGSGLWRQLGDLLTAAVRDFAEPVP 80 (352)
T ss_pred chhhhhHHHHHhhhhhhhhccCcccccchhhhhhhhhcccccchhhhccchHHHHHhhccccc
Confidence 5788899999999987654211 11111 245664 46789999999995 4555554
No 42
>PF12102 DUF3578: Domain of unknown function (DUF3578); InterPro: IPR021961 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 177 to 191 amino acids in length. ; PDB: 3SSD_B 3SSE_A 3SSC_B.
Probab=27.50 E-value=87 Score=22.24 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCcceeeeeccCCCCCHHHHHHHHHHHHhhhhhc
Q 042047 2 EGVGIARKINLSLYNSFETLANSLIHMFATYQKS 35 (83)
Q Consensus 2 eG~~igRkiDL~~~~sY~~L~~~L~~MF~~~~~~ 35 (83)
+|...++.-|+...-+.++|...|..|.....+.
T Consensus 151 ~~~I~~k~Y~~~~lp~~~~L~~DL~~~l~~Y~~~ 184 (188)
T PF12102_consen 151 AGTIAYKYYDLDNLPDEEELEEDLKEMLEIYKEL 184 (188)
T ss_dssp TSEEEEEEEGGG----HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEechhhCCCHHHHHHHHHHHHHHHHHH
Confidence 3555689999999999999999999999987654
No 43
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair]
Probab=26.83 E-value=1.1e+02 Score=22.68 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=15.4
Q ss_pred CCCceEEEEEcCCCCeEEe
Q 042047 38 RGVRYTLTYQDKEGDWLIA 56 (83)
Q Consensus 38 ~~~~~~l~Y~D~eGD~mlv 56 (83)
....++|+-+|++||..=+
T Consensus 87 rrvg~VLa~rd~dgd~FGa 105 (212)
T COG5142 87 RRVGFVLACRDKDGDLFGA 105 (212)
T ss_pred cCceEEEEEEcCCCCEeee
Confidence 4556999999999998644
No 44
>PF15306 LIN37: LIN37
Probab=25.48 E-value=25 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.2
Q ss_pred eeeeeccCCCCCHHHHHHHHHHHH
Q 042047 6 IARKINLSLYNSFETLANSLIHMF 29 (83)
Q Consensus 6 igRkiDL~~~~sY~~L~~~L~~MF 29 (83)
.+|+|||+.|+.=..||. |.+-.
T Consensus 21 fdRsvdLa~f~~~tpLY~-lCRaW 43 (148)
T PF15306_consen 21 FDRSVDLAQFSENTPLYP-LCRAW 43 (148)
T ss_pred eCceeeecccCCCCcHHH-HHHHH
Confidence 689999999988777877 55444
No 45
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=25.34 E-value=48 Score=24.25 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCCe---EEecCCChhHHhhccceeEEeeC
Q 042047 38 RGVRYTLTYQDKEGDW---LIAGDVPWQTFIESVQRLEILRC 76 (83)
Q Consensus 38 ~~~~~~l~Y~D~eGD~---mlvGD~PW~~F~~~vkrl~I~~~ 76 (83)
+..-.++.|...+-|| +--|+-|+. +|+.|...
T Consensus 138 G~~c~HlAfr~~~~DwQiWI~~g~~PLP------~k~vIT~k 173 (214)
T PF09865_consen 138 GVECDHLAFRNDDVDWQIWIADGDKPLP------RKYVITYK 173 (214)
T ss_pred CEEeEEEEEecCCceEEEEEcCCCccee------eEEEEEEC
Confidence 4457789999888884 567887876 56666443
No 46
>PF14132 DUF4299: Domain of unknown function (DUF4299)
Probab=25.13 E-value=61 Score=25.19 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCe------EEecCCChhHHhhcc
Q 042047 40 VRYTLTYQDKEGDW------LIAGDVPWQTFIESV 68 (83)
Q Consensus 40 ~~~~l~Y~D~eGD~------mlvGD~PW~~F~~~v 68 (83)
+.|.+...+.+||- -.+|.+|++.|++..
T Consensus 244 ~~W~i~l~~i~gd~~~~e~y~~lg~l~Y~~Fi~~L 278 (304)
T PF14132_consen 244 SFWRISLVDIDGDENDPESYESLGELPYEDFIEKL 278 (304)
T ss_pred eEEEEEEEEecCCCCchhhccccccCcHHHHHHhc
Confidence 35999999988887 789999999999876
No 47
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=25.01 E-value=59 Score=18.92 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=24.1
Q ss_pred eeeeeccCCCCCHHHHHHHHHHHHhhhhhc
Q 042047 6 IARKINLSLYNSFETLANSLIHMFATYQKS 35 (83)
Q Consensus 6 igRkiDL~~~~sY~~L~~~L~~MF~~~~~~ 35 (83)
|-+++.-..|.+.+++...+..||..+...
T Consensus 48 I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~ 77 (99)
T cd04369 48 IKKKLKNGEYKSLEEFEADVRLIFSNAKTY 77 (99)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445666678999999999999999876543
No 48
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=24.47 E-value=23 Score=27.55 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=9.5
Q ss_pred CCcceeeeecc
Q 042047 2 EGVGIARKINL 12 (83)
Q Consensus 2 eG~~igRkiDL 12 (83)
.|.|+|||+|-
T Consensus 237 ~~g~vGRkLDF 247 (290)
T COG1561 237 KGGPVGRKLDF 247 (290)
T ss_pred cCCccchhHHH
Confidence 57899999996
No 49
>PF03625 DUF302: Domain of unknown function DUF302 ; InterPro: IPR005180 This domain is found in an undescribed set of proteins. It normally occurs uniquely within a sequence, but is found as a tandem repeat (Q9X8B8 from SWISSPROT). It has an interesting phylogenetic distribution with the majority of examples in bacteria and archaea, but it is also found in Drosophila melanogaster (e.g. Q9VA18 from SWISSPROT). The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold [].; PDB: 1Q9U_A 1J3M_B.
Probab=24.33 E-value=39 Score=19.40 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=11.9
Q ss_pred ceEEEEEcCCCCeEEe
Q 042047 41 RYTLTYQDKEGDWLIA 56 (83)
Q Consensus 41 ~~~l~Y~D~eGD~mlv 56 (83)
--+++|+|.+|.+.+.
T Consensus 46 crv~vye~~~G~~~v~ 61 (65)
T PF03625_consen 46 CRVLVYEDEDGKVWVS 61 (65)
T ss_dssp EEEEEEE-ETTEEEEE
T ss_pred eEEEEEEecCCeEEEE
Confidence 4589999999987765
No 50
>PRK10543 superoxide dismutase; Provisional
Probab=24.19 E-value=1.6e+02 Score=21.02 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhhc---------ccCCCceEEEEEcCCC
Q 042047 19 ETLANSLIHMFATYQKS---------EKRGVRYTLTYQDKEG 51 (83)
Q Consensus 19 ~~L~~~L~~MF~~~~~~---------~~~~~~~~l~Y~D~eG 51 (83)
..|..++++=||..... ..-+++|.....|.+|
T Consensus 91 ~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~~~ 132 (193)
T PRK10543 91 GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNADG 132 (193)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECCCC
Confidence 45666666666643221 1246889888877644
No 51
>PHA01548 hypothetical protein
Probab=23.74 E-value=80 Score=22.50 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCCeEE----------------ecCCCh
Q 042047 40 VRYTLTYQDKEGDWLI----------------AGDVPW 61 (83)
Q Consensus 40 ~~~~l~Y~D~eGD~ml----------------vGD~PW 61 (83)
....++-.|++|.-.+ ||+.||
T Consensus 103 dalrvvlidKdGkayha~SQgVVssIQkiisIvGpapw 140 (167)
T PHA01548 103 DALRVVLIDKDGKAYHAVSQGVVSSIQKIISIVGPAPW 140 (167)
T ss_pred eeeEEEEEccCCCEeeeehHHHHHHHHHHHHHhCCCCC
Confidence 4568899999999875 799999
No 52
>PF05423 Mycobact_memb: Mycobacterium membrane protein; InterPro: IPR008693 This family contains several membrane proteins from Mycobacterium species [].
Probab=23.48 E-value=81 Score=21.68 Aligned_cols=24 Identities=29% Similarity=0.673 Sum_probs=20.0
Q ss_pred CCceEEEEEcCCCCeEEecC--CChh
Q 042047 39 GVRYTLTYQDKEGDWLIAGD--VPWQ 62 (83)
Q Consensus 39 ~~~~~l~Y~D~eGD~mlvGD--~PW~ 62 (83)
+.--.+.|.|.+|..-.+-+ .||.
T Consensus 62 G~~~~I~Y~D~~~~~~~~~~v~LPWs 87 (140)
T PF05423_consen 62 GSTATISYLDADGQPQQVDNVSLPWS 87 (140)
T ss_pred CCeEEEEEEcCCCceEeecCcCCCCE
Confidence 34579999999999999866 6998
No 53
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.40 E-value=78 Score=20.48 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCeEEecCCChhH
Q 042047 41 RYTLTYQDKEGDWLIAGDVPWQT 63 (83)
Q Consensus 41 ~~~l~Y~D~eGD~mlvGD~PW~~ 63 (83)
.=+|.|.|.+ .+++=|..||..
T Consensus 25 ~PrL~yvdp~-~~~~KgeIp~s~ 46 (89)
T cd01262 25 GPRLIYVDPV-KKVVKGEIPWSD 46 (89)
T ss_pred CceEEEEcCC-cCeEEeEecccc
Confidence 4489999998 677789999997
No 54
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=22.25 E-value=2e+02 Score=22.86 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=37.0
Q ss_pred ccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec-CCChhHHhhccc
Q 042047 11 NLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG-DVPWQTFIESVQ 69 (83)
Q Consensus 11 DL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG-D~PW~~F~~~vk 69 (83)
+-..-++|++.+.-+++.-.+. ...+.+-|.|.-||.+-+- |.-+.--+++++
T Consensus 35 ~r~~~~~f~~F~~Lv~~~H~i~------nvdvllgY~d~hgDLLPinNDDn~~ka~~sa~ 88 (358)
T KOG3606|consen 35 PRHSASSFDEFYSLVEHLHHIP------NVDVLLGYADTHGDLLPINNDDNLHKALSSAR 88 (358)
T ss_pred cccCcccHHHHHHHHHHHhcCC------CceEEEEEecCCCceecccCchhHHHHhhccC
Confidence 3445568888888888777663 4689999999999999775 334443334433
No 55
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=22.02 E-value=97 Score=23.61 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCC
Q 042047 12 LSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEG 51 (83)
Q Consensus 12 L~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eG 51 (83)
+.++-+...+..++.++..-.+= ..++++|+|.||
T Consensus 112 i~l~P~~~~~~~Ai~dli~~~~W-----~~v~~iYe~d~~ 146 (333)
T cd06394 112 VNLHPSNEDISVAVAGILNSFNY-----PTASLICAKAEC 146 (333)
T ss_pred EEecCCHHHHHHHHHHHHHhcCC-----CEEEEEEeCcHH
Confidence 55667888899999888876543 578999999998
No 56
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=21.93 E-value=86 Score=20.30 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=12.0
Q ss_pred CCeEEecCCChhHHhhccceeEEeeCC
Q 042047 51 GDWLIAGDVPWQTFIESVQRLEILRCG 77 (83)
Q Consensus 51 GD~mlvGD~PW~~F~~~vkrl~I~~~~ 77 (83)
.+...||+.|| ||++.|..
T Consensus 21 S~~f~vgG~~W--------~i~~~P~g 39 (137)
T cd03772 21 SPPCFVRNLPW--------KIMVMPRN 39 (137)
T ss_pred CCCEEECCcce--------EEEEEeCC
Confidence 45567788888 55555544
No 57
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=21.64 E-value=71 Score=25.16 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEcCCCCeEEec---CCChhHHhhcccee
Q 042047 45 TYQDKEGDWLIAG---DVPWQTFIESVQRL 71 (83)
Q Consensus 45 ~Y~D~eGD~mlvG---D~PW~~F~~~vkrl 71 (83)
+|+=+|| |..++ +-.|+.||+.+.+-
T Consensus 238 ~y~~~DG-~i~i~~~~~~~w~~l~~~lg~~ 266 (405)
T PRK03525 238 LYKCADG-YIVMELVGITQIKECFKDIGLA 266 (405)
T ss_pred ceEcCCC-cEEEEECCHHHHHHHHHHhCCc
Confidence 5999999 76553 34699999887653
No 58
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=21.60 E-value=39 Score=26.18 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=13.5
Q ss_pred CCCCeEEecCCChhHH
Q 042047 49 KEGDWLIAGDVPWQTF 64 (83)
Q Consensus 49 ~eGD~mlvGD~PW~~F 64 (83)
.++..|||||.|+..|
T Consensus 96 ga~~~llv~DlPFgty 111 (306)
T KOG2949|consen 96 GAKRPLLVGDLPFGTY 111 (306)
T ss_pred cCCCceEEEecCcccc
Confidence 4677899999999887
No 59
>PF09676 TraV: Type IV conjugative transfer system lipoprotein (TraV); InterPro: IPR014118 This entry represents TraV, a component of a conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK [, , ]. This protein contains three conserved cysteines in the N-terminal half.
Probab=21.55 E-value=73 Score=20.42 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=15.7
Q ss_pred CceEEEEEcCCCCeEEecCC
Q 042047 40 VRYTLTYQDKEGDWLIAGDV 59 (83)
Q Consensus 40 ~~~~l~Y~D~eGD~mlvGD~ 59 (83)
.-|+.-|+|.+|+.-.-|.|
T Consensus 91 RiwiaP~~D~~g~l~~~~~V 110 (119)
T PF09676_consen 91 RIWIAPWEDADGDLHDPGYV 110 (119)
T ss_pred EEEEeeeECCCCCEeccceE
Confidence 35889999999998776644
No 60
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=21.19 E-value=1.1e+02 Score=18.57 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.4
Q ss_pred eeeccCCCCCHHHHHHHHHHHHhh
Q 042047 8 RKINLSLYNSFETLANSLIHMFAT 31 (83)
Q Consensus 8 RkiDL~~~~sY~~L~~~L~~MF~~ 31 (83)
+.||.+.-.+..+|..+|.+-|+.
T Consensus 1 ~~idg~~i~~~~~~~~~l~~~l~f 24 (81)
T cd05141 1 IVLDLSGIADKAALLDALAAALDF 24 (81)
T ss_pred CEEecccCCCHHHHHHHHHHHcCC
Confidence 468999999999999999998876
No 61
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=20.84 E-value=1.6e+02 Score=16.30 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047 18 FETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG 57 (83)
Q Consensus 18 Y~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG 57 (83)
|..+...|.+.|+.... .-++++-+-..++|...|
T Consensus 21 ~~~it~~l~~~~~~p~~-----~v~V~i~e~~~~~w~~gG 55 (62)
T PRK00745 21 VEEITRVTVETLGCPPE-----SVDIIITDVKRENWATGG 55 (62)
T ss_pred HHHHHHHHHHHcCCChh-----HEEEEEEEcChHHeeECC
Confidence 34455555556665332 345555555666676655
No 62
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=20.63 E-value=2.3e+02 Score=17.79 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeE
Q 042047 15 YNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWL 54 (83)
Q Consensus 15 ~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~m 54 (83)
|+||+.+.+.+...-.. ..+++|+....|.....+
T Consensus 15 FGS~d~fk~~f~~~a~~-----~~GsGW~wLv~d~~~~~L 49 (106)
T PF02777_consen 15 FGSFDNFKAEFTAAALS-----VFGSGWVWLVYDPSDGKL 49 (106)
T ss_dssp HSSHHHHHHHHHHHHHH-----SSSSEEEEEEEETTTTEE
T ss_pred hCCHHHHHHHHHHHHhc-----CCCCCeeeeeecccccee
Confidence 44555544444333221 135789888888444333
No 63
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=20.61 E-value=2.6e+02 Score=21.76 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHh-hhhhcccCCCceEEEEEcC--CCCeEEecCCCh-hHHhhccceeEEeeCC
Q 042047 15 YNSFETLANSLIHMFA-TYQKSEKRGVRYTLTYQDK--EGDWLIAGDVPW-QTFIESVQRLEILRCG 77 (83)
Q Consensus 15 ~~sY~~L~~~L~~MF~-~~~~~~~~~~~~~l~Y~D~--eGD~mlvGD~PW-~~F~~~vkrl~I~~~~ 77 (83)
+=+|+++...|++-|. .... .....+..-.|+-. .|-+=++. |+ +.||.+|.|||+-...
T Consensus 249 ~~~~~ei~~~l~~~~~~~~~~-~~~~~~~a~~y~~~~~~g~ig~I~--~~s~~FC~~CnRlRltadG 312 (373)
T PLN02951 249 LVPYAEMMDRIEQRFPSLKRL-QDHPTDTAKNFRIDGHCGSVSFIT--SMTEHFCAGCNRLRLLADG 312 (373)
T ss_pred CCCHHHHHHHHHHhcCccccc-CCCCCCCceEEEECCCCeEEEEEc--CCcccccccCCeEEEccCC
Confidence 3478999999998876 2221 11122334445432 23333343 44 5699999999998765
No 64
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=20.42 E-value=2.4e+02 Score=17.81 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCC--eEEe-cCCChhHHhhcc
Q 042047 13 SLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGD--WLIA-GDVPWQTFIESV 68 (83)
Q Consensus 13 ~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD--~mlv-GD~PW~~F~~~v 68 (83)
..=-+|.+|...|.+-|.... ..-+|-|.+.+.+ |-.+ |+.-+|.--+.|
T Consensus 14 ~~g~~y~~L~~~ls~kL~l~~------~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v 66 (78)
T cd06411 14 PRGADVSSLRALLSQALPQQA------QRGQLSYRAPGEDGHWVPISGEESLQRAWQDV 66 (78)
T ss_pred cCCCCHHHHHHHHHHHhcCCh------hhcEEEecCCCCCccEeecCcchHHHHHHHhc
Confidence 344579999999988887644 3468999977765 4344 477776554444
No 65
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=20.34 E-value=49 Score=26.62 Aligned_cols=16 Identities=31% Similarity=0.792 Sum_probs=13.4
Q ss_pred EcCCCCeEEecCCChhH
Q 042047 47 QDKEGDWLIAGDVPWQT 63 (83)
Q Consensus 47 ~D~eGD~mlvGD~PW~~ 63 (83)
.+-+|||.-|| .||.+
T Consensus 149 ip~dgdw~nv~-~~wn~ 164 (425)
T KOG4540|consen 149 IPLDGDWRNVT-EPWNE 164 (425)
T ss_pred CCCCCcccccC-CCccc
Confidence 37799999999 79974
No 66
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=20.34 E-value=49 Score=26.62 Aligned_cols=16 Identities=31% Similarity=0.792 Sum_probs=13.4
Q ss_pred EcCCCCeEEecCCChhH
Q 042047 47 QDKEGDWLIAGDVPWQT 63 (83)
Q Consensus 47 ~D~eGD~mlvGD~PW~~ 63 (83)
.+-+|||.-|| .||.+
T Consensus 149 ip~dgdw~nv~-~~wn~ 164 (425)
T COG5153 149 IPLDGDWRNVT-EPWNE 164 (425)
T ss_pred CCCCCcccccC-CCccc
Confidence 37799999999 79974
No 67
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=20.30 E-value=56 Score=17.40 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhh
Q 042047 18 FETLANSLIHMFAT 31 (83)
Q Consensus 18 Y~~L~~~L~~MF~~ 31 (83)
|++...+|..||..
T Consensus 1 ~~~~v~~L~~mFP~ 14 (42)
T PF02845_consen 1 REEMVQQLQEMFPD 14 (42)
T ss_dssp CHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHCCC
Confidence 46788999999974
No 68
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=20.28 E-value=49 Score=19.22 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=19.1
Q ss_pred cCCCCeEEecCCChhHHhhccce
Q 042047 48 DKEGDWLIAGDVPWQTFIESVQR 70 (83)
Q Consensus 48 D~eGD~mlvGD~PW~~F~~~vkr 70 (83)
|.+|-.+.+..--|..|+..||+
T Consensus 34 ~p~~~~L~~t~~eW~aFl~~vka 56 (56)
T PF04149_consen 34 DPDGPVLTFTPAEWAAFLAGVKA 56 (56)
T ss_pred CCCCCEEEeCHHHHHHHHHHhhC
Confidence 44688888888999999998874
Done!