Query 042048
Match_columns 286
No_of_seqs 126 out of 666
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 13:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 5.1E-46 1.1E-50 371.0 27.6 276 8-285 334-656 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 6.8E-33 1.5E-37 255.0 12.7 155 13-169 124-283 (295)
3 smart00302 GED Dynamin GTPase 100.0 1.6E-27 3.5E-32 182.9 12.6 90 191-282 3-92 (92)
4 PF02212 GED: Dynamin GTPase e 99.9 3.6E-24 7.7E-29 164.4 11.3 89 192-282 4-92 (92)
5 COG0699 Predicted GTPases (dyn 97.8 0.0054 1.2E-07 60.4 21.4 237 29-277 235-542 (546)
6 KOG2662 Magnesium transporters 57.8 1.6E+02 0.0035 28.6 11.1 85 72-163 171-259 (414)
7 COG4997 Uncharacterized conser 56.1 75 0.0016 23.9 6.8 70 208-277 4-86 (95)
8 PF15011 CK2S: Casein Kinase 2 52.5 1.2E+02 0.0026 25.6 8.6 73 84-157 8-86 (168)
9 PF02344 Myc-LZ: Myc leucine z 47.3 13 0.00029 22.5 1.4 26 250-275 5-30 (32)
10 PF10041 DUF2277: Uncharacteri 43.4 55 0.0012 24.0 4.4 36 51-86 10-49 (78)
11 PF09278 MerR-DNA-bind: MerR, 42.4 89 0.0019 21.3 5.4 40 239-281 25-64 (65)
12 PF06753 Bradykinin: Bradykini 37.0 14 0.00031 19.3 0.4 11 71-81 3-13 (19)
13 cd04777 HTH_MerR-like_sg1 Heli 32.9 65 0.0014 24.7 3.7 64 32-96 32-96 (107)
14 PF12357 PLD_C: Phospholipase 32.5 67 0.0015 23.5 3.4 33 94-126 7-44 (74)
15 cd01108 HTH_CueR Helix-Turn-He 31.8 2.1E+02 0.0046 22.6 6.7 80 30-115 32-112 (127)
16 PTZ00010 tubulin beta chain; P 29.1 1.4E+02 0.0031 29.2 6.1 124 3-138 115-256 (445)
17 COG3186 Phenylalanine-4-hydrox 28.7 93 0.002 28.3 4.3 46 42-87 67-118 (291)
18 COG3579 PepC Aminopeptidase C 27.9 62 0.0014 30.8 3.2 57 214-270 152-211 (444)
19 cd05029 S-100A6 S-100A6: S-100 27.1 2.6E+02 0.0056 20.6 8.3 78 1-88 2-79 (88)
20 PF12057 DUF3538: Domain of un 24.8 1E+02 0.0022 24.7 3.5 35 246-280 20-59 (120)
21 TIGR00588 ogg 8-oxoguanine DNA 24.6 2.5E+02 0.0055 26.0 6.7 68 57-132 98-170 (310)
22 cd04783 HTH_MerR1 Helix-Turn-H 23.3 3.7E+02 0.008 21.1 7.0 77 31-115 33-110 (126)
23 PF04614 Pex19: Pex19 protein 23.3 2E+02 0.0043 25.9 5.6 57 40-112 148-209 (248)
24 PF08232 Striatin: Striatin fa 22.6 4.1E+02 0.0089 21.5 6.8 59 220-278 5-64 (134)
25 cd04786 HTH_MerR-like_sg7 Heli 21.9 3.4E+02 0.0073 21.7 6.2 78 31-115 33-111 (131)
26 KOG4098 Molecular chaperone Pr 20.8 1.4E+02 0.003 24.4 3.5 26 84-110 49-74 (140)
27 PF10664 NdhM: Cyanobacterial 20.8 1.7E+02 0.0036 22.8 3.8 30 92-126 38-67 (108)
28 PF07749 ERp29: Endoplasmic re 20.5 1.4E+02 0.003 22.6 3.5 27 246-273 66-92 (95)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=5.1e-46 Score=371.00 Aligned_cols=276 Identities=30% Similarity=0.390 Sum_probs=239.6
Q ss_pred HHHHHhhhhhhcCcccccccCccccchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 042048 8 MKTLMDFPHLGGGLIVSLEVGDWDGHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLI 86 (286)
Q Consensus 8 ~~~l~~~~~~~~g~~~~~~~~el~gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lv 86 (286)
..|-.+|++.+.|..+...+.+++|||||+|+|++.|+..+ .+++.+.++..+|+++++|++|+++++|+|+.+||.+|
T Consensus 334 ~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~~lf~p~~afe~lv 413 (657)
T KOG0446|consen 334 REDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRPSLFVPESSFESLV 413 (657)
T ss_pred HHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCccccCChHHHHHHH
Confidence 45666788888888876557789999999999999999999 89888899999999999999999999999999999999
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhhhhcCCH--
Q 042048 87 DSALNYFRGPAEASVDAVHFVLKELVRRSIGETQELKRFPTLQSEIAAAANEALERFRDDSKKTTMRLVEMESSYLTV-- 164 (286)
Q Consensus 87 k~qI~~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp~L~~~v~~~i~~~l~~~~~~a~~~i~~li~~E~~yint-- 164 (286)
++||+.+++||++||+.|++++.++++.+..+ .+|.|||.|+..+.+++.++++++.++++++|.++|+||.+|+||
T Consensus 414 k~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~-~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~i~~e~~yinT~h 492 (657)
T KOG0446|consen 414 KGQIQSLRDPSLKCVEEVHRELVRIVADSIRA-TELKRFPVLYSELVEIASSLIAEGLDETKKAVKNLIDLEQSYLNTDH 492 (657)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcC
Confidence 99999999999999999999999999999732 289999999999999999999999999999999999999999999
Q ss_pred -HhhccCchhh---hh--------------cCCCCCC-C----CC---------------------CCCChHHHHHHHHH
Q 042048 165 -DFFRKLPQDI---ER--------------VGNPTAP-S----AA---------------------DRYTEGHFRRIGSN 200 (286)
Q Consensus 165 -d~~~~~~~~~---~~--------------~~~~~~~-~----~~---------------------~~~~~~~~~~i~~~ 200 (286)
||++...+.. .. .+...+. . +. ......+.+.|+.+
T Consensus 493 ~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 572 (657)
T KOG0446|consen 493 PDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPSDIVLSRALVLKKRECKETEEISSC 572 (657)
T ss_pred hhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhcccchhhhhhhhcchhhhHHHHHHHHH
Confidence 5665432111 11 0000000 0 00 00011267899999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhHhhhhCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 042048 201 VSSYVGMVSETLKNTIPKAVVHCQVKEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPMLMERRQQCAKRLELYKSARDEID 280 (286)
Q Consensus 201 v~sYF~Iv~k~i~D~VPk~I~~~LV~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~i~~kR~~l~~~l~~L~~A~~~L~ 280 (286)
+.+||+||+++|+|+|||+|||+||+.++++||++|++.||.. .+.+++||+|+|.++.+|+.|++++++|++|++++.
T Consensus 573 ~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~-~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~~ii~ 651 (657)
T KOG0446|consen 573 PESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAG-DEQLESLLKEDPRIKRRRELQQKRLLALQKALSILA 651 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999992 348999999999999999999999999999999999
Q ss_pred hcccC
Q 042048 281 SVSWT 285 (286)
Q Consensus 281 ~i~~~ 285 (286)
.+.|+
T Consensus 652 ~~~~~ 656 (657)
T KOG0446|consen 652 TVAQA 656 (657)
T ss_pred HHhcc
Confidence 99876
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=6.8e-33 Score=255.02 Aligned_cols=155 Identities=23% Similarity=0.405 Sum_probs=130.8
Q ss_pred hhhhhhcCccc-ccccCccccchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 042048 13 DFPHLGGGLIV-SLEVGDWDGHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSAL 90 (286)
Q Consensus 13 ~~~~~~~g~~~-~~~~~el~gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI 90 (286)
.+..+++|... +..+.++.|||||+++|++.|...+ .+++.++++++||+++|+|++|+++|||+|+.||+.||++||
T Consensus 124 ~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i 203 (295)
T PF01031_consen 124 IFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQI 203 (295)
T ss_dssp HHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHH
Confidence 44556668876 4678889999999999999999999 887776899999999999999999999999999999999999
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhhhhcCCH---Hhh
Q 042048 91 NYFRGPAEASVDAVHFVLKELVRRSIGETQELKRFPTLQSEIAAAANEALERFRDDSKKTTMRLVEMESSYLTV---DFF 167 (286)
Q Consensus 91 ~~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp~L~~~v~~~i~~~l~~~~~~a~~~i~~li~~E~~yint---d~~ 167 (286)
++|++||++|++.|++++.+++..++ .++|.|||+|++++.+++.++++++.++|+++|+++|+||++|||| ||+
T Consensus 204 ~~l~~Pa~~cv~~V~~~l~~i~~~~~--~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~ 281 (295)
T PF01031_consen 204 EKLEEPALQCVEEVHEELQRIVEQVL--EKEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFL 281 (295)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHH--CHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhc--chhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHH
Confidence 99999999999999999999999998 6899999999999999999999999999999999999999999999 466
Q ss_pred cc
Q 042048 168 RK 169 (286)
Q Consensus 168 ~~ 169 (286)
+.
T Consensus 282 ~~ 283 (295)
T PF01031_consen 282 GE 283 (295)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 3
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.95 E-value=1.6e-27 Score=182.86 Aligned_cols=90 Identities=42% Similarity=0.592 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhHhhhhCCChHHHHHHHHHHHHHH
Q 042048 191 EGHFRRIGSNVSSYVGMVSETLKNTIPKAVVHCQVKEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPMLMERRQQCAKRLE 270 (286)
Q Consensus 191 ~~~~~~i~~~v~sYF~Iv~k~i~D~VPk~I~~~LV~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~i~~kR~~l~~~l~ 270 (286)
+.++++|+.++.|||+||+++++|+|||+||||||+.+++.||++|++.||+++ .+++||+|||+|++||+.|+++++
T Consensus 3 ~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~--~~~~LL~E~~~i~~kR~~~~~~l~ 80 (92)
T smart00302 3 DSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEE--LLDELLEEDPEIASKRKELKKRLE 80 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcc--cHHHHHcCCHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999999999999999985 699999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 042048 271 LYKSARDEIDSV 282 (286)
Q Consensus 271 ~L~~A~~~L~~i 282 (286)
+|++|+++|++|
T Consensus 81 ~L~~A~~~l~~v 92 (92)
T smart00302 81 LLKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 4
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.91 E-value=3.6e-24 Score=164.43 Aligned_cols=89 Identities=28% Similarity=0.497 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhHhhhhCCChHHHHHHHHHHHHHHH
Q 042048 192 GHFRRIGSNVSSYVGMVSETLKNTIPKAVVHCQVKEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPMLMERRQQCAKRLEL 271 (286)
Q Consensus 192 ~~~~~i~~~v~sYF~Iv~k~i~D~VPk~I~~~LV~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~i~~kR~~l~~~l~~ 271 (286)
.++++|++++.|||+||++|++|+|||+|+|+||+++.+.|+.+|++.|+..+ .+++||+|||+|+++|+.|++++++
T Consensus 4 ~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~--~~~~Ll~Ed~~i~~kR~~l~~~~~~ 81 (92)
T PF02212_consen 4 REVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEE--DLEELLQEDPEIAEKREELKKKLER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG--GCCCCT--GHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchH--HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999986 4999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 042048 272 YKSARDEIDSV 282 (286)
Q Consensus 272 L~~A~~~L~~i 282 (286)
|++|+++|++|
T Consensus 82 L~~A~~~L~~~ 92 (92)
T PF02212_consen 82 LKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 99999999875
No 5
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=97.77 E-value=0.0054 Score=60.41 Aligned_cols=237 Identities=15% Similarity=0.170 Sum_probs=175.2
Q ss_pred ccccchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHH
Q 042048 29 DWDGHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYFRGPAEASVDAVHFV 107 (286)
Q Consensus 29 el~gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~ 107 (286)
++.+|+|+... . .+.....+.+..+.....++.|.++..|.+..++..+|..++..+..++.+|+..+...
T Consensus 235 ~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 306 (546)
T COG0699 235 ELVRGARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISE 306 (546)
T ss_pred HHhccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655 2 22333367888899999999999999999999999999999999999998887766666
Q ss_pred HHHHHHHHhcccccCCCchhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhhhhcCCH---HhhccCc--hhhhhc-----
Q 042048 108 LKELVRRSIGETQELKRFPTLQSEIAAAANEALERFRDDSKKTTMRLVEMESSYLTV---DFFRKLP--QDIERV----- 177 (286)
Q Consensus 108 l~~iv~~~~~~~~~f~rFp~L~~~v~~~i~~~l~~~~~~a~~~i~~li~~E~~yint---d~~~~~~--~~~~~~----- 177 (286)
+.++..... ......+||.+...+...+.++........+..+...++.+..|++| ++..... ....+.
T Consensus 307 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 385 (546)
T COG0699 307 LVRILLKEL-ESASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEERYINTKHPLFLSLRQAAAILSKVLDNLE 385 (546)
T ss_pred HHHHHHhhh-cccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 666533332 24567999999999999999999999999999999999999999985 1211000 000000
Q ss_pred ------C--CCCCC----------------------------------C----CC-----------CCCC---hHHHHHH
Q 042048 178 ------G--NPTAP----------------------------------S----AA-----------DRYT---EGHFRRI 197 (286)
Q Consensus 178 ------~--~~~~~----------------------------------~----~~-----------~~~~---~~~~~~i 197 (286)
+ .+.+. + .. ...+ ..+...+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 465 (546)
T COG0699 386 ALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLDALLATLGEALRRLTGLLPERKTLEKQLI 465 (546)
T ss_pred HHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccchhhhccchHHHHHhhcccchhhhhhhHHH
Confidence 0 00000 0 00 0001 1233567
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhHhhhhCCChHHHHHHHHHHHHHHHHHHHHH
Q 042048 198 GSNVSSYVGMVSETLKNTIPKAVVHCQVKEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPMLMERRQQCAKRLELYKSARD 277 (286)
Q Consensus 198 ~~~v~sYF~Iv~k~i~D~VPk~I~~~LV~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~i~~kR~~l~~~l~~L~~A~~ 277 (286)
..++.+| .++...+.|.+++++++.+.+..+...+......++... ..+.+..+.+.+.+.|..+......+.++..
T Consensus 466 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 466 KSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQ--LEDELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999 999999999999999999988777777777777777664 5788888999999999999999999888865
No 6
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=57.80 E-value=1.6e+02 Score=28.59 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHHHhHHhHHHHH
Q 042048 72 QPHLIAPEQGYRRLIDSALNYFRGPAEASVDAVHFVLKELVRRSIGETQELKRFPTLQSEIAAAANEALERFRDDSKKTT 151 (286)
Q Consensus 72 ~~plFvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp~L~~~v~~~i~~~l~~~~~~a~~~i 151 (286)
+.++..=+.|.|....-.+..|..-....-..++.+|+++..++- ...+.+--.++.++.. +......-++++
T Consensus 171 ~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is--~~nL~~lr~~k~~Lt~-----l~~rvqkvRDeL 243 (414)
T KOG2662|consen 171 KDELPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKIS--TLNLERLRILKKRLTE-----LTSRVQKVRDEL 243 (414)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHhHHHHH-----HHHHHHHHHHHH
Confidence 346666677888888888888877776666777888888777664 3445555555555543 333345555666
Q ss_pred HHHH----HhhhhcCC
Q 042048 152 MRLV----EMESSYLT 163 (286)
Q Consensus 152 ~~li----~~E~~yin 163 (286)
..++ ||+..|+.
T Consensus 244 e~LLddd~Dma~mYLT 259 (414)
T KOG2662|consen 244 EELLDDDDDMAEMYLT 259 (414)
T ss_pred HHHhcChHHHHHHHHh
Confidence 6666 45555544
No 7
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=56.09 E-value=75 Score=23.88 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=49.2
Q ss_pred HHHHHHhhHHHHHHH-------------HHHHHHHHHHHHHHHHHHhchhhHhHhhhhCCChHHHHHHHHHHHHHHHHHH
Q 042048 208 VSETLKNTIPKAVVH-------------CQVKEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPMLMERRQQCAKRLELYKS 274 (286)
Q Consensus 208 v~k~i~D~VPk~I~~-------------~LV~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~i~~kR~~l~~~l~~L~~ 274 (286)
--|-|+|.||-+|.. .......+.|+.++-.-+.....+.+..+|.==..|++-|..-++.+.+++.
T Consensus 4 ~~KliRD~IpEII~nsgr~~~~h~a~d~ey~~~Le~KL~EE~~E~ledk~lEeLadllEvi~~ia~a~gfske~l~~~R~ 83 (95)
T COG4997 4 YNKLIRDLIPEIILNSGRIPVTHIAEDEEYKELLENKLLEEVEEFLEDKNLEELADLLEVISRIAEARGFSKENLEALRL 83 (95)
T ss_pred HHHHHHHhhHHHHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 346789999999853 3444455566666655555544456788888888899999998998888876
Q ss_pred HHH
Q 042048 275 ARD 277 (286)
Q Consensus 275 A~~ 277 (286)
-.+
T Consensus 84 ~Kk 86 (95)
T COG4997 84 QKK 86 (95)
T ss_pred HHH
Confidence 543
No 8
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=52.49 E-value=1.2e+02 Score=25.64 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=48.5
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHH--hc----ccccCCCchhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHh
Q 042048 84 RLIDSALNYFRGPAEASVDAVHFVLKELVRRS--IG----ETQELKRFPTLQSEIAAAANEALERFRDDSKKTTMRLVEM 157 (286)
Q Consensus 84 ~Lvk~qI~~l~~Ps~~cv~~V~~~l~~iv~~~--~~----~~~~f~rFp~L~~~v~~~i~~~l~~~~~~a~~~i~~li~~ 157 (286)
.=|+++..+|.+--.+|...+...- .++.+. +. ....++.||.|++++.......++.-...-.+.+..+-+.
T Consensus 8 ~~~~~~~~~W~~~~~~~~~~l~sl~-nL~eqL~al~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~~l~~v 86 (168)
T PF15011_consen 8 RKVEEQMEKWDSALSRCLPLLSSLA-NLAEQLQALQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRETLEELQKV 86 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478899999998877777665432 333222 11 1223999999999998888777777666666666555443
No 9
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=47.35 E-value=13 Score=22.47 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.2
Q ss_pred hhhCCChHHHHHHHHHHHHHHHHHHH
Q 042048 250 QLLDEDPMLMERRQQCAKRLELYKSA 275 (286)
Q Consensus 250 ~LL~Ed~~i~~kR~~l~~~l~~L~~A 275 (286)
.|+.|.+....+|+.|+.+++.|++.
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57777888889999999999999864
No 10
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=43.43 E-value=55 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.426 Sum_probs=29.4
Q ss_pred CcCCCCCHHHHH----HHHHhcCCCCCCCCCCHHHHHHHH
Q 042048 51 PFDRHLSPQNVR----KVVSEADGYQPHLIAPEQGYRRLI 86 (286)
Q Consensus 51 ~~~~~l~~~dI~----~~i~n~~G~~~plFvp~~aFe~Lv 86 (286)
++..+-|++||+ ++.++-+|...|.=.+..+|+.-|
T Consensus 10 ~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV 49 (78)
T PF10041_consen 10 NFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAV 49 (78)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHH
Confidence 445567999997 567888999999999999998643
No 11
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=42.36 E-value=89 Score=21.28 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=28.2
Q ss_pred HHhchhhHhHhhhhCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042048 239 QLGKKEGKQLAQLLDEDPMLMERRQQCAKRLELYKSARDEIDS 281 (286)
Q Consensus 239 ~L~~~~~~~~~~LL~Ed~~i~~kR~~l~~~l~~L~~A~~~L~~ 281 (286)
.++..++..+.... .-+.++++.+.++++.|++..+.|..
T Consensus 25 ~l~~~~~~~~~~~~---~~l~~~~~~i~~~i~~L~~~~~~L~~ 64 (65)
T PF09278_consen 25 ELYDQGDPPCADRR---ALLEEKLEEIEEQIAELQALRAQLEH 64 (65)
T ss_dssp HHCCSHCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443323344444 66788999999999999999888764
No 12
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=36.97 E-value=14 Score=19.30 Aligned_cols=11 Identities=27% Similarity=0.461 Sum_probs=8.7
Q ss_pred CCCCCCCCHHH
Q 042048 71 YQPHLIAPEQG 81 (286)
Q Consensus 71 ~~~plFvp~~a 81 (286)
++||+|.|+..
T Consensus 3 r~p~gftpfrg 13 (19)
T PF06753_consen 3 RRPPGFTPFRG 13 (19)
T ss_pred ccCCCCCcccc
Confidence 57999999753
No 13
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.95 E-value=65 Score=24.67 Aligned_cols=64 Identities=14% Similarity=0.008 Sum_probs=35.6
Q ss_pred cchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhcccc
Q 042048 32 GHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYFRGP 96 (286)
Q Consensus 32 gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~P 96 (286)
+|-|.++--.-..-..| .+-.. +++.+||+.++..........-.+......++.++++.+++-
T Consensus 32 ~g~r~Y~~~~~~~l~~I~~lr~~-G~sL~eI~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 96 (107)
T cd04777 32 GGQYFFDEKCQDDLEFILELKGL-GFSLIEIQKIFSYKRLTKSRTHEDQDYYKSFLKNKKDELEKE 96 (107)
T ss_pred CCccccCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 56565433222222222 23344 899999999998643222222223455677888887776653
No 14
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=32.54 E-value=67 Score=23.51 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhc-----ccccCCCch
Q 042048 94 RGPAEASVDAVHFVLKELVRRSIG-----ETQELKRFP 126 (286)
Q Consensus 94 ~~Ps~~cv~~V~~~l~~iv~~~~~-----~~~~f~rFp 126 (286)
++-|++||..|..+-++....-.. -.-|+-+||
T Consensus 7 ~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YP 44 (74)
T PF12357_consen 7 EPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYP 44 (74)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCC
Confidence 445899999999998888775432 234566666
No 15
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=31.82 E-value=2.1e+02 Score=22.61 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=46.1
Q ss_pred cccchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q 042048 30 WDGHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYFRGPAEASVDAVHFVL 108 (286)
Q Consensus 30 l~gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l 108 (286)
-.||-|.+..=+-.--..| .+-.. +++.+||+.++........ +......++..+++.+++=- .-++.....+
T Consensus 32 ~~~g~R~Y~~~~~~~l~~I~~lr~~-G~sL~eI~~~l~~~~~~~~----~~~~~~~~l~~~~~~l~~~i-~~L~~~~~~l 105 (127)
T cd01108 32 SDNGYRVYNQRDIEELRFIRRARDL-GFSLEEIRELLALWRDPSR----ASADVKALALEHIAELERKI-AELQAMRRTL 105 (127)
T ss_pred CCCCceecCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3578887765443434444 34444 8999999999975443222 22344567777777776643 2244445555
Q ss_pred HHHHHHH
Q 042048 109 KELVRRS 115 (286)
Q Consensus 109 ~~iv~~~ 115 (286)
..++..+
T Consensus 106 ~~~~~~~ 112 (127)
T cd01108 106 QQLADSC 112 (127)
T ss_pred HHHHHHc
Confidence 5544433
No 16
>PTZ00010 tubulin beta chain; Provisional
Probab=29.05 E-value=1.4e+02 Score=29.24 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhhhhhhcCcccccccCcccc---chhHHHHhHHhhhhhh--c--c-CcCCCCCHHHHH---------HHH
Q 042048 3 EIATGMKTLMDFPHLGGGLIVSLEVGDWDG---HQKRSLLIDHGLFEVI--M--L-PFDRHLSPQNVR---------KVV 65 (286)
Q Consensus 3 ~~~~~~~~l~~~~~~~~g~~~~~~~~el~g---GaRI~~if~~~f~~~i--~--~-~~~~~l~~~dI~---------~~i 65 (286)
++.+.++-.++.|+.+.|+.---+-+.-.| |++|...++++|++.+ . + |.. ..++.-|. ..+
T Consensus 115 ~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~-~~~~~~v~~YN~~lsl~~l~ 193 (445)
T PTZ00010 115 SVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSP-KVSDTVVEPYNATLSVHQLV 193 (445)
T ss_pred HHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCc-ccCccchhhhHHHHhHHHHH
Confidence 466777888888998888876555444333 5999999999999775 2 2 433 22221111 122
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccccCCCch-hHHHHHHHHHHH
Q 042048 66 SEADGYQPHLIAPEQGYRRLIDSALNYFRGPAEASVDAVHFVLKELVRRSIGETQELKRFP-TLQSEIAAAANE 138 (286)
Q Consensus 66 ~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp-~L~~~v~~~i~~ 138 (286)
+++ ..-.++--+|...+++++. .++.|+ .+.+..++-..+..+ ..--||| .+...+.++..+
T Consensus 194 ~~~---d~~i~~dN~al~~i~~~~l-~~~~p~---~~~lN~lIaq~is~~----t~~~Rfpg~ln~dl~~l~tn 256 (445)
T PTZ00010 194 ENA---DESMCIDNEALYDICFRTL-KLTTPT---YGDLNHLVSAVMSGV----TCCLRFPGQLNSDLRKLAVN 256 (445)
T ss_pred hcC---CceeeeccHHHHHHHHHhc-cCCCCC---HHHHHHHHHhhcccc----ccceecCCcccccHHHHHHH
Confidence 222 2334555667777777776 467788 555555553333222 2346787 233333333333
No 17
>COG3186 Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]
Probab=28.75 E-value=93 Score=28.31 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=35.9
Q ss_pred Hhhhhhh-cc--CcCCCCCHHHHHHHHHhcCCCC---CCCCCCHHHHHHHHH
Q 042048 42 HGLFEVI-ML--PFDRHLSPQNVRKVVSEADGYQ---PHLIAPEQGYRRLID 87 (286)
Q Consensus 42 ~~f~~~i-~~--~~~~~l~~~dI~~~i~n~~G~~---~plFvp~~aFe~Lvk 87 (286)
+.|-..+ .+ |.++-...++|-+.++..+||+ -|++||...|-.++.
T Consensus 67 ~~fLdgle~lgL~~~~ipd~~~in~~l~~~Tgw~v~~Vpglvp~~~ff~lLa 118 (291)
T COG3186 67 QEFLDGLEALGLPLSRIPDFDEINRVLQRETGWQVVAVPGLVPFDVFFDLLA 118 (291)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHHHHHHHhcCcEEEecCccCChHHHHHHHh
Confidence 4566666 44 5555667899999999999998 699999998877653
No 18
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=27.90 E-value=62 Score=30.75 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhHhhhhCCChH---HHHHHHHHHHHHH
Q 042048 214 NTIPKAVVHCQVKEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPM---LMERRQQCAKRLE 270 (286)
Q Consensus 214 D~VPk~I~~~LV~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~---i~~kR~~l~~~l~ 270 (286)
-.|||.++-.....+...-.+.+++.+-+.....+...+.|-.+ +..+|+++.+.+=
T Consensus 152 GvVpK~~ypes~sSS~Sr~ln~~Ln~~LR~dAqiLR~a~~eg~~~~~v~~~kEe~l~eif 211 (444)
T COG3579 152 GVVPKSVYPESFSSSNSRELNALLNKLLRQDAQILRDALKEGADDDTVEALKEELLQEIF 211 (444)
T ss_pred CCCchhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 35788888888777777666777777666655567777777666 7777776665543
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=27.13 E-value=2.6e+02 Score=20.64 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHhhhhhhcCcccccccCccccchhHHHHhHHhhhhhhccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHH
Q 042048 1 MAEIATGMKTLMDFPHLGGGLIVSLEVGDWDGHQKRSLLIDHGLFEVIMLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQ 80 (286)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~el~gGaRI~~if~~~f~~~i~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~ 80 (286)
||++-.+|..++..-..+.|... ..|-+. ..=+..++... .+....++.+||..+++.. +....|-+.+.
T Consensus 2 ~~~~e~~~~~~i~~F~~y~~~~~--~~g~Is-~~EL~~~l~~~------~~lg~k~t~~ev~~m~~~~-D~d~dG~Idf~ 71 (88)
T cd05029 2 ASPLDQAIGLLVAIFHKYSGREG--DKNTLS-KKELKELIQKE------LTIGSKLQDAEIAKLMEDL-DRNKDQEVNFQ 71 (88)
T ss_pred CcHHHHHHHHHHHHHHHHHccCC--CCCEEC-HHHHHHHHHHH------HhcCCCCCHHHHHHHHHHh-cCCCCCCCcHH
Confidence 57788888888888777776432 112222 11222222211 1222357899999988766 66777899999
Q ss_pred HHHHHHHH
Q 042048 81 GYRRLIDS 88 (286)
Q Consensus 81 aFe~Lvk~ 88 (286)
.|..++.+
T Consensus 72 EFv~lm~~ 79 (88)
T cd05029 72 EYVTFLGA 79 (88)
T ss_pred HHHHHHHH
Confidence 99777654
No 20
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=24.79 E-value=1e+02 Score=24.69 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=24.8
Q ss_pred HhHhhhhCCChHHH-----HHHHHHHHHHHHHHHHHHHhh
Q 042048 246 KQLAQLLDEDPMLM-----ERRQQCAKRLELYKSARDEID 280 (286)
Q Consensus 246 ~~~~~LL~Ed~~i~-----~kR~~l~~~l~~L~~A~~~L~ 280 (286)
+.+-++|++||..- +.|++.+..++...+|.+.|+
T Consensus 20 ery~~iL~~~~~~e~~~~~~~re~~QRi~d~VsEalh~ls 59 (120)
T PF12057_consen 20 ERYHEILQEDPSFEYENNTQEREEDQRIFDLVSEALHYLS 59 (120)
T ss_pred HHHHHHHhcCCCCCCCCCccchhhHhHHHHHHHHHHHHHH
Confidence 46778888888666 778888877776666555443
No 21
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
Probab=24.60 E-value=2.5e+02 Score=26.02 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=43.7
Q ss_pred CHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc-----ccccCCCchhHHHH
Q 042048 57 SPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYFRGPAEASVDAVHFVLKELVRRSIG-----ETQELKRFPTLQSE 131 (286)
Q Consensus 57 ~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l~~iv~~~~~-----~~~~f~rFp~L~~~ 131 (286)
.|..+..++....|.++|+. +.||.||.=-+.+=.. +..+...+..++...-. ....+-.||....-
T Consensus 98 ~D~~l~~~~~~~~GlRi~~~---d~fE~lv~~IlsQq~s-----i~~a~~~~~rL~~~~G~~~~~~~g~~~~~FPtp~~L 169 (310)
T TIGR00588 98 VDKHFQYVAQKFQGVRLLRQ---DPFECLISFICSSNNN-----IARITRMVERLCQAFGPRLITLDGVTYHGFPSLHAL 169 (310)
T ss_pred cCHHHHHHHHhCCCCCCCCC---CHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHH
Confidence 46778889999999999998 5688888877766333 34445555555543310 11225679976544
Q ss_pred H
Q 042048 132 I 132 (286)
Q Consensus 132 v 132 (286)
.
T Consensus 170 a 170 (310)
T TIGR00588 170 T 170 (310)
T ss_pred h
Confidence 3
No 22
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.31 E-value=3.7e+02 Score=21.07 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=44.0
Q ss_pred ccchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q 042048 31 DGHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYFRGPAEASVDAVHFVLK 109 (286)
Q Consensus 31 ~gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l~ 109 (286)
.||-|.+..=+-..-..+ .+-.. +++.+||+.++....+. .......++..+++.+++-- +-+......+.
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~~-G~sL~eI~~~l~~~~~~------~~~~~~~~l~~~~~~l~~~i-~~L~~~~~~l~ 104 (126)
T cd04783 33 EGGYRRYPEETVTRLRFIKRAQEL-GFTLDEIAELLELDDGT------DCSEARELAEQKLAEVDEKI-ADLQRMRASLQ 104 (126)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHc-CCCHHHHHHHHhcccCC------CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456665543322222333 33444 89999999999865532 33456677777777776543 23444555555
Q ss_pred HHHHHH
Q 042048 110 ELVRRS 115 (286)
Q Consensus 110 ~iv~~~ 115 (286)
.+...+
T Consensus 105 ~~~~~~ 110 (126)
T cd04783 105 ELVSQC 110 (126)
T ss_pred HHHHhc
Confidence 555444
No 23
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=23.26 E-value=2e+02 Score=25.86 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=38.0
Q ss_pred hHHhhhhhhccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhccccH-----HHHHHHHHHHHHHHH
Q 042048 40 IDHGLFEVIMLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYFRGPA-----EASVDAVHFVLKELV 112 (286)
Q Consensus 40 f~~~f~~~i~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps-----~~cv~~V~~~l~~iv 112 (286)
+++.|+.|++-+-. .++.+|..++-++ ..+|++-+..++.|. -.+.+.|...+.++-
T Consensus 148 l~~kyP~wL~~n~~-~l~~ed~~rY~~Q---------------~~~v~~I~~~fE~~~~~d~~~~~~~~i~~lmqemQ 209 (248)
T PF04614_consen 148 LRDKYPEWLEENKS-KLSAEDYERYEKQ---------------YELVKEICAIFEKPPYDDEDPERREKIMELMQEMQ 209 (248)
T ss_dssp HHHHHHHHHHHHCC-CS-HHHHHHHHHH---------------HHHHHHHHHHHHH--TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCcC-cCCHHHHHHHHHH---------------HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHH
Confidence 45789999932222 6788999988777 378888888888876 456676666655443
No 24
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.59 E-value=4.1e+02 Score=21.45 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhh-HhHhhhhCCChHHHHHHHHHHHHHHHHHHHHHH
Q 042048 220 VVHCQVKEAKRSLLDHFYAQLGKKEG-KQLAQLLDEDPMLMERRQQCAKRLELYKSARDE 278 (286)
Q Consensus 220 I~~~LV~~~~~~Lq~~L~~~L~~~~~-~~~~~LL~Ed~~i~~kR~~l~~~l~~L~~A~~~ 278 (286)
|||||-....+.=...-.-++-+.+. ..+..|=.|--....-.+.|..+++.|..|.+-
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887776555555555555543 457777777777777788899999999888653
No 25
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=21.85 E-value=3.4e+02 Score=21.72 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=44.0
Q ss_pred ccchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q 042048 31 DGHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYFRGPAEASVDAVHFVLK 109 (286)
Q Consensus 31 ~gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l~ 109 (286)
.||-|.+.--.-.--..| .+-.. +++.+||+.++....|.. +......++.+++..+..- .+-+......+.
T Consensus 33 ~~gyR~Y~~~~v~~l~~I~~lr~~-GfsL~eI~~ll~~~~~~~-----~~~~~~~~l~~k~~~i~~~-i~~L~~~~~~L~ 105 (131)
T cd04786 33 ANGYRDYPPETVWVLEIISSAQQA-GFSLDEIRQLLPADASNW-----QHDELLAALERKVADIEAL-EARLAQNKAQLL 105 (131)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHc-CCCHHHHHHHHhcccCCC-----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 467776654333333333 33333 899999999997543321 2345566778887777663 333444444455
Q ss_pred HHHHHH
Q 042048 110 ELVRRS 115 (286)
Q Consensus 110 ~iv~~~ 115 (286)
+++..+
T Consensus 106 ~~i~~~ 111 (131)
T cd04786 106 VLIDLI 111 (131)
T ss_pred HHHHHH
Confidence 555444
No 26
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.83 E-value=1.4e+02 Score=24.41 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHH
Q 042048 84 RLIDSALNYFRGPAEASVDAVHFVLKE 110 (286)
Q Consensus 84 ~Lvk~qI~~l~~Ps~~cv~~V~~~l~~ 110 (286)
.+|-..|+.+ +|..+|+.++..+|.+
T Consensus 49 ~lVi~tlk~~-dp~RKCfRmIgGvLVE 74 (140)
T KOG4098|consen 49 KLVIETLKDL-DPTRKCFRMIGGVLVE 74 (140)
T ss_pred HHHHHHHHhc-ChhhHHHHHhccchhh
Confidence 3555555554 6899999999988843
No 27
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=20.77 E-value=1.7e+02 Score=22.77 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=23.4
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhcccccCCCch
Q 042048 92 YFRGPAEASVDAVHFVLKELVRRSIGETQELKRFP 126 (286)
Q Consensus 92 ~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp 126 (286)
.|.+.+ ++.|+..+.++|..-. ...++-|.
T Consensus 38 ~W~~~~---l~kVy~~F~eLVe~~~--G~~LtdYn 67 (108)
T PF10664_consen 38 NWNEEA---LQKVYRKFDELVESYA--GEDLTDYN 67 (108)
T ss_pred ccCHHH---HHHHHHHHHHHHHhhc--CCCchhhh
Confidence 377777 8999999999998765 56777764
No 28
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=20.51 E-value=1.4e+02 Score=22.59 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=21.1
Q ss_pred HhHhhhhCCChHHHHHHHHHHHHHHHHH
Q 042048 246 KQLAQLLDEDPMLMERRQQCAKRLELYK 273 (286)
Q Consensus 246 ~~~~~LL~Ed~~i~~kR~~l~~~l~~L~ 273 (286)
.++..||. ..-...+++.++.+++.|+
T Consensus 66 ~RL~~lL~-~~l~~~K~del~~R~NIL~ 92 (95)
T PF07749_consen 66 ARLERLLE-GKLSPEKKDELQKRLNILS 92 (95)
T ss_dssp HHHHHHHH-SSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 35777887 6677799999999998886
Done!