Query 042048
Match_columns 286
No_of_seqs 126 out of 666
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 23:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 6.7E-54 2.3E-58 433.7 23.2 272 9-285 355-768 (772)
2 3ljb_A Interferon-induced GTP- 100.0 3.1E-53 1.1E-57 381.9 16.0 251 4-258 3-271 (271)
3 3szr_A Interferon-induced GTP- 100.0 1.6E-49 5.4E-54 396.3 19.6 254 6-283 345-607 (608)
4 3t34_A Dynamin-related protein 47.1 2.3 8E-05 38.5 -1.6 27 255-281 333-359 (360)
5 2wl8_A Peroxisomal biogenesis 26.0 72 0.0024 24.7 4.0 57 40-112 38-102 (126)
6 3n9r_A Fructose-bisphosphate a 21.8 50 0.0017 29.5 2.7 37 30-66 209-246 (307)
7 1h8b_A ACT-EF34, alpha-actinin 18.9 1.6E+02 0.0056 20.0 4.4 33 55-87 34-70 (75)
8 4b4o_A Epimerase family protei 16.1 61 0.0021 27.5 2.0 32 54-85 221-252 (298)
9 2x2e_A Dynamin-1; nitration, h 15.5 3.6E+02 0.012 23.5 7.1 39 247-285 313-351 (353)
10 1od6_A PPAT, phosphopantethein 15.4 2E+02 0.007 21.9 4.8 33 54-88 125-157 (160)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=6.7e-54 Score=433.71 Aligned_cols=272 Identities=17% Similarity=0.307 Sum_probs=219.6
Q ss_pred HHHHhhhhhhcCcccccccCccccchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 042048 9 KTLMDFPHLGGGLIVSLEVGDWDGHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLID 87 (286)
Q Consensus 9 ~~l~~~~~~~~g~~~~~~~~el~gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk 87 (286)
.|-.+|.+.++|...++++.+++|||||+++|++.|++.+ .+++++.++++||+++|+|++|+++++|+|+.+||.||+
T Consensus 355 ~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~lf~p~~~fe~LVk 434 (772)
T 3zvr_A 355 QFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVK 434 (772)
T ss_dssp HHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCCCChHHHHHHHHH
Confidence 4555777788899988999999999999999999999999 999888999999999999999999999999999999999
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhhhhcCCH---
Q 042048 88 SALNYFRGPAEASVDAVHFVLKELVRRSIGETQELKRFPTLQSEIAAAANEALERFRDDSKKTTMRLVEMESSYLTV--- 164 (286)
Q Consensus 88 ~qI~~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp~L~~~v~~~i~~~l~~~~~~a~~~i~~li~~E~~yint--- 164 (286)
+||++|++||++||+.|+++|.+++++|. ++|.|||+|++++.+++.++|++++.+|+++|.++|+||.+||||
T Consensus 435 ~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~E~ayintnHp 511 (772)
T 3zvr_A 435 KQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHE 511 (772)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCh
Confidence 99999999999999999999999999884 689999999999999999999999999999999999999999999
Q ss_pred HhhccCc------h---------h----h---------h----hcCCC---------------------------CC---
Q 042048 165 DFFRKLP------Q---------D----I---------E----RVGNP---------------------------TA--- 182 (286)
Q Consensus 165 d~~~~~~------~---------~----~---------~----~~~~~---------------------------~~--- 182 (286)
||.+... + + . + ++|.. ..
T Consensus 512 df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (772)
T 3zvr_A 512 DFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLK 591 (772)
T ss_dssp TCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCCEEEEEECTTEE
T ss_pred hhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeeccccccccccchhhhcccccccccccc
Confidence 4665321 0 0 0 0 00000 00
Q ss_pred ---------------------CC-------------------------C-----CC----------C------------C
Q 042048 183 ---------------------PS-------------------------A-----AD----------R------------Y 189 (286)
Q Consensus 183 ---------------------~~-------------------------~-----~~----------~------------~ 189 (286)
.. + ++ . .
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (772)
T 3zvr_A 592 LRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSDSFMHSM 671 (772)
T ss_dssp EEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC-----------------------
T ss_pred cchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCccccccccccccCCccccccccCC
Confidence 00 0 00 0 0
Q ss_pred Ch---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhHhhhhCCChHHHHHHHHHH
Q 042048 190 TE---GHFRRIGSNVSSYVGMVSETLKNTIPKAVVHCQVKEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPMLMERRQQCA 266 (286)
Q Consensus 190 ~~---~~~~~i~~~v~sYF~Iv~k~i~D~VPk~I~~~LV~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~i~~kR~~l~ 266 (286)
.+ .+++.|+.+|+|||.||+|++.|.|||+|||+|||.+++.++.+|++.||..+ .++.||+|+|++++||++|.
T Consensus 672 ~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~--~~~~lm~Es~~~~~~r~~~~ 749 (772)
T 3zvr_A 672 DPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCG--DQNTLMEESAEQAQRRDEML 749 (772)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTC--CTTTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CHHHHHhcCHHHHHHHHHHH
Confidence 00 25789999999999999999999999999999999999999999999999996 69999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccC
Q 042048 267 KRLELYKSARDEIDSVSWT 285 (286)
Q Consensus 267 ~~l~~L~~A~~~L~~i~~~ 285 (286)
+++++|++|..+|.+|.++
T Consensus 750 ~~~~~l~~a~~ii~~i~~~ 768 (772)
T 3zvr_A 750 RMYHALKEALSIIGDINTT 768 (772)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 9999999999999999864
No 2
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.1e-53 Score=381.93 Aligned_cols=251 Identities=13% Similarity=0.139 Sum_probs=194.4
Q ss_pred HHHHHHHHHhhhhhhcCcccccccCc---cccchhHHHHhHHhhhhhh-ccCcCC----CCCHHHHHHHHHhcCCCCCCC
Q 042048 4 IATGMKTLMDFPHLGGGLIVSLEVGD---WDGHQKRSLLIDHGLFEVI-MLPFDR----HLSPQNVRKVVSEADGYQPHL 75 (286)
Q Consensus 4 ~~~~~~~l~~~~~~~~g~~~~~~~~e---l~gGaRI~~if~~~f~~~i-~~~~~~----~l~~~dI~~~i~n~~G~~~pl 75 (286)
-++-|+||++.++.|++++.++..|| ..||+||++.+++.|.+|. .++... ....++|.+++++|+|+++||
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 36789999999999999999999997 3455999999999999999 774321 233589999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 042048 76 IAPEQGYRRLIDSALNYFRGPAEASVDAVHFVLKELVRRSIGETQELKRFPTLQSEIAAAANEALERFRDDSKKTTMRLV 155 (286)
Q Consensus 76 Fvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp~L~~~v~~~i~~~l~~~~~~a~~~i~~li 155 (286)
|+||.|||.||++||++|++||++|++.|++++.+++..++ .++|+|||+|++++.++|.+++.+|..+|++||+++|
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~--~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~ 160 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVS--IKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 160 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888 6899999999999999999999999999999999999
Q ss_pred HhhhhcCCHH-hhccCchhh-----hhc-CCCCCCCCC--CCCCh-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 042048 156 EMESSYLTVD-FFRKLPQDI-----ERV-GNPTAPSAA--DRYTE-GHFRRIGSNVSSYVGMVSETLKNTIPKAVVHCQV 225 (286)
Q Consensus 156 ~~E~~yintd-~~~~~~~~~-----~~~-~~~~~~~~~--~~~~~-~~~~~i~~~v~sYF~Iv~k~i~D~VPk~I~~~LV 225 (286)
+||+.++++| .|.+..+.. +.. ..+..+.++ ...+. ..+.+|+.++.|||+||++|++|+|||+|+|+||
T Consensus 161 ~mE~~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll 240 (271)
T 3ljb_A 161 QMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFML 240 (271)
T ss_dssp HHHTSCC----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccCCHHHHHHHHHHHHHHhcccccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999766656 444332111 110 000000011 12223 5688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhHhHhhhhCCChHH
Q 042048 226 KEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPML 258 (286)
Q Consensus 226 ~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~i 258 (286)
+.++++||++|++.||..+ .+++||+|||++
T Consensus 241 ~~~~~~lQ~~ml~~l~~~~--~~~~LL~E~~d~ 271 (271)
T 3ljb_A 241 QTYGQQLQKAMLQLLQDKD--TYSWLLKERSDT 271 (271)
T ss_dssp HHHHHHHHHHHHHTTSCGG--GHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHhchh--hHHHHhcCCCCC
Confidence 9999999999999999986 799999999985
No 3
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=1.6e-49 Score=396.29 Aligned_cols=254 Identities=14% Similarity=0.150 Sum_probs=214.1
Q ss_pred HHHHHHHhhhhhhcCcccccccCc-cccc--hhHHHHhHHhhhhhh-ccC----cCCCCCHHHHHHHHHhcCCCCCCCCC
Q 042048 6 TGMKTLMDFPHLGGGLIVSLEVGD-WDGH--QKRSLLIDHGLFEVI-MLP----FDRHLSPQNVRKVVSEADGYQPHLIA 77 (286)
Q Consensus 6 ~~~~~l~~~~~~~~g~~~~~~~~e-l~gG--aRI~~if~~~f~~~i-~~~----~~~~l~~~dI~~~i~n~~G~~~plFv 77 (286)
+-+.+|++.++.|.......-+|+ ..|| +|+++.+++.|.+|. .+. ......++||+++++|++|+++|||+
T Consensus 345 ~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~ 424 (608)
T 3szr_A 345 EKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFV 424 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCc
Confidence 334455555555544333333333 3333 677777777777777 542 22256789999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHh
Q 042048 78 PEQGYRRLIDSALNYFRGPAEASVDAVHFVLKELVRRSIGETQELKRFPTLQSEIAAAANEALERFRDDSKKTTMRLVEM 157 (286)
Q Consensus 78 p~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp~L~~~v~~~i~~~l~~~~~~a~~~i~~li~~ 157 (286)
|+.|||.||++||++|++||++|++.|++++..++..++ .++|+|||+|++++.+++.++++++.++|+++|+++|+|
T Consensus 425 ~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~--~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~m 502 (608)
T 3szr_A 425 NYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVS--IKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQM 502 (608)
T ss_dssp CTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH--HHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 689999999999999999999999999999999999999
Q ss_pred hhhcCCHH-hhccCchhhhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042048 158 ESSYLTVD-FFRKLPQDIERVGNPTAPSAADRYTEGHFRRIGSNVSSYVGMVSETLKNTIPKAVVHCQVKEAKRSLLDHF 236 (286)
Q Consensus 158 E~~yintd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~sYF~Iv~k~i~D~VPk~I~~~LV~~~~~~Lq~~L 236 (286)
|+.|+++| +|.. ....+.+|+.+|+|||+||+||++|+|||+||||||+.+++.||++|
T Consensus 503 E~~~~~~d~~~~~--------------------~~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l 562 (608)
T 3szr_A 503 EQIVYGAFQSSSA--------------------TDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAM 562 (608)
T ss_dssp HHHCCCC-----------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhccccCCccccC--------------------CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 4431 01123469999999999999999999999999999999999999999
Q ss_pred HHHHhchhhHhHhhhhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042048 237 YAQLGKKEGKQLAQLLDEDPMLMERRQQCAKRLELYKSARDEIDSVS 283 (286)
Q Consensus 237 ~~~L~~~~~~~~~~LL~Ed~~i~~kR~~l~~~l~~L~~A~~~L~~i~ 283 (286)
++.||+.+ .+++||+|||++++||+.|++++++|++|+++|.++.
T Consensus 563 ~~~l~~~~--~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 563 LQLLQDKD--TYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HTTTTCHH--HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcch--hHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999875 6999999999999999999999999999999999874
No 4
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=47.09 E-value=2.3 Score=38.47 Aligned_cols=27 Identities=59% Similarity=0.994 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042048 255 DPMLMERRQQCAKRLELYKSARDEIDS 281 (286)
Q Consensus 255 d~~i~~kR~~l~~~l~~L~~A~~~L~~ 281 (286)
+|.++++|+.|.++++.+++|+..+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (360)
T 3t34_A 333 DPAIMERRSAISKRLELYRAAQSEIDA 359 (360)
T ss_dssp ----CCCTTHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 789999999999999999999876543
No 5
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=25.99 E-value=72 Score=24.66 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=40.0
Q ss_pred hHHhhhhhhccCcCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhccccHH--------HHHHHHHHHHHHH
Q 042048 40 IDHGLFEVIMLPFDRHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYFRGPAE--------ASVDAVHFVLKEL 111 (286)
Q Consensus 40 f~~~f~~~i~~~~~~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps~--------~cv~~V~~~l~~i 111 (286)
+++.|+.|++-+-. .++.+|..++-++ ..+|++-+..++.|.. .+.+.|.+.+.++
T Consensus 38 l~~kyP~WLe~nk~-~l~~Ed~~RY~kQ---------------~~lv~~I~~~fE~~~~~D~~~~~~~~~~~i~~Lmq~m 101 (126)
T 2wl8_A 38 ITEKYPEWLQSHRE-SLPPEQFEKYQEQ---------------HSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQL 101 (126)
T ss_dssp HHTTHHHHHHHHGG-GSCHHHHHHHHHH---------------HHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHhCcc-cCCHHHHHHHHHH---------------HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 45689999922222 4688999988777 3788899999988753 4667666666554
Q ss_pred H
Q 042048 112 V 112 (286)
Q Consensus 112 v 112 (286)
-
T Consensus 102 Q 102 (126)
T 2wl8_A 102 Q 102 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=21.78 E-value=50 Score=29.53 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=16.2
Q ss_pred cccchhHHHHhHHhhhhhh-ccCcCCCCCHHHHHHHHH
Q 042048 30 WDGHQKRSLLIDHGLFEVI-MLPFDRHLSPQNVRKVVS 66 (286)
Q Consensus 30 l~gGaRI~~if~~~f~~~i-~~~~~~~l~~~dI~~~i~ 66 (286)
+|||..+-.-+-+.|.+.. .++...++++++|+++|+
T Consensus 209 lHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~ 246 (307)
T 3n9r_A 209 LHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVK 246 (307)
T ss_dssp ESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHH
T ss_pred EeCCCCcchHHHHHHHHhcCccCCCCCCCHHHHHHHHH
Confidence 4444433333333333433 444444555555555553
No 7
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=18.88 E-value=1.6e+02 Score=20.01 Aligned_cols=33 Identities=6% Similarity=0.014 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhcC-CC---CCCCCCCHHHHHHHHH
Q 042048 55 HLSPQNVRKVVSEAD-GY---QPHLIAPEQGYRRLID 87 (286)
Q Consensus 55 ~l~~~dI~~~i~n~~-G~---~~plFvp~~aFe~Lvk 87 (286)
.+++++|...|+.+. -. ..+|-+.|..|-.++.
T Consensus 34 ~lt~eevd~~i~~~d~~dg~~~~dG~idY~eF~~~m~ 70 (75)
T 1h8b_A 34 ELPPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSALY 70 (75)
T ss_dssp HSCHHHHHHHHHHSCSCCCSSCCTTCBCHHHHHHHHT
T ss_pred cCCHHHHHHHHHhcCcccCCCCCCCcCcHHHHHHHHh
Confidence 689999999999976 22 2679999999976653
No 8
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=16.12 E-value=61 Score=27.52 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 042048 54 RHLSPQNVRKVVSEADGYQPHLIAPEQGYRRL 85 (286)
Q Consensus 54 ~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~L 85 (286)
+++|..|+-..+...-|...+.-+|..+.+.+
T Consensus 221 ~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~ 252 (298)
T 4b4o_A 221 SSATNAEFAQTFGAALGRRAFIPLPSAVVQAV 252 (298)
T ss_dssp CCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHH
T ss_pred CccCHHHHHHHHHHHhCcCCcccCCHHHHHHH
Confidence 37888888888888888765555676655443
No 9
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=15.45 E-value=3.6e+02 Score=23.55 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=27.8
Q ss_pred hHhhhhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 042048 247 QLAQLLDEDPMLMERRQQCAKRLELYKSARDEIDSVSWT 285 (286)
Q Consensus 247 ~~~~LL~Ed~~i~~kR~~l~~~l~~L~~A~~~L~~i~~~ 285 (286)
.+.+.-.++|.-..+|..+-+.+..+.++..++.+|.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 351 (353)
T 2x2e_A 313 EYKNFRPDKHGTDSRVDEMLRMYHALKEALSIIGNINTT 351 (353)
T ss_dssp HHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HccCCCCCchhhhhHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 355555667766677899999999999999999999865
No 10
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=15.42 E-value=2e+02 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 042048 54 RHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDS 88 (286)
Q Consensus 54 ~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~ 88 (286)
..+|-.+||+.+++ |.....++|+...+.|.+.
T Consensus 125 ~~ISST~IR~~l~~--G~~~~~~vP~~V~~~I~~~ 157 (160)
T 1od6_A 125 SFVSSTMVKEIARY--GGDVSKLVPPATLRALKAK 157 (160)
T ss_dssp TTCCHHHHHHHHHT--TCCCTTTSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHc--CCChhHHCCHHHHHHHHHH
Confidence 37999999999976 5667789999999887654
Done!