Query 042048
Match_columns 286
No_of_seqs 126 out of 666
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 23:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042048.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042048hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1avsa_ a.39.1.5 (A:) Troponin 28.1 30 0.0022 22.2 3.8 36 55-91 46-81 (81)
2 d1tzyc_ a.22.1.1 (C:) Histone 27.5 82 0.006 21.2 6.2 31 58-93 8-38 (95)
3 d2peoa1 a.280.1.1 (A:1-115) Ru 25.0 57 0.0042 23.0 5.1 62 195-262 8-70 (115)
4 d1x3zb1 a.189.1.1 (B:253-309) 17.1 27 0.0019 21.0 1.4 13 122-134 32-44 (57)
5 d1ltza_ d.178.1.1 (A:) Phenyla 14.6 75 0.0055 25.8 4.2 45 43-87 56-106 (277)
6 d1tuba1 c.32.1.1 (A:1-245) Tub 14.2 37 0.0027 27.2 2.1 46 3-48 117-165 (245)
7 d1tubb1 c.32.1.1 (B:1-245) Tub 13.8 35 0.0026 27.2 1.8 113 3-126 115-243 (243)
8 d1o6ba_ c.26.1.3 (A:) Phosphop 13.1 1.5E+02 0.011 20.4 5.3 32 54-87 124-155 (163)
9 d1jhda2 c.26.1.5 (A:174-396) A 13.1 1.1E+02 0.008 23.0 4.8 31 55-87 185-216 (223)
10 d1wrka1 a.39.1.5 (A:4-85) Trop 13.0 1.1E+02 0.0079 19.3 4.0 34 55-89 48-81 (82)
No 1
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.09 E-value=30 Score=22.22 Aligned_cols=36 Identities=3% Similarity=0.068 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHh
Q 042048 55 HLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALN 91 (286)
Q Consensus 55 ~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~ 91 (286)
++++.+|..++... ....-|.+++..|..++.+.++
T Consensus 46 ~~s~~e~~~~~~~~-D~d~~g~I~~~eF~~~m~~k~k 81 (81)
T d1avsa_ 46 NPTKEELDAIIEEV-DEDGSGTIDFEEFLVMMVRQMK 81 (81)
T ss_dssp CCCHHHHHHHHHHH-CTTCCSSEEHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHh-CCCCCCeEeHHHHHHHHHHhcC
Confidence 57889999888876 3445678999999999887753
No 2
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=27.47 E-value=82 Score=21.24 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhc
Q 042048 58 PQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALNYF 93 (286)
Q Consensus 58 ~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~qI~~l 93 (286)
..||+.+ ++ +.-+.+|-..|..||+.-...+
T Consensus 8 LrEIRk~-Qk----st~lLIpk~pF~RLVRei~~~~ 38 (95)
T d1tzyc_ 8 LREIRRY-QK----STELLIRKLPFQRLVREIAQDF 38 (95)
T ss_dssp HHHHHHH-HH----CCSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hC----CcccccccccHHHHHHHHHHhc
Confidence 4677765 43 4457899999999999987763
No 3
>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}
Probab=25.01 E-value=57 Score=22.97 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhHhhhhCCChHHHHHH
Q 042048 195 RRIGSNVSSYVGM-VSETLKNTIPKAVVHCQVKEAKRSLLDHFYAQLGKKEGKQLAQLLDEDPMLMERR 262 (286)
Q Consensus 195 ~~i~~~v~sYF~I-v~k~i~D~VPk~I~~~LV~~~~~~Lq~~L~~~L~~~~~~~~~~LL~Ed~~i~~kR 262 (286)
+.....+.+||.- +.+.+.++.--. -...-.-|..-+-..+.. +..=+..|+.|+|+++.|-
T Consensus 8 kd~ak~L~~yfTy~AvrvVl~Ql~e~-----np~~~~wL~~f~~~~~~D-Gd~~l~~L~~e~~~lA~RI 70 (115)
T d2peoa1 8 KDTAKTLQSYLTYQALRTVLAQLGET-----NPPLALWLHNFSAGKVQD-GEKYIEELFLEKPDLALRI 70 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHCC--CC-HHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-----CcHHHHHHHHHHcCCCcC-HHHHHHHHHhhCHHHHHHH
Confidence 3445677888873 445555554211 111112222222222222 2256889999999987653
No 4
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.12 E-value=27 Score=21.02 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=11.0
Q ss_pred CCCchhHHHHHHH
Q 042048 122 LKRFPTLQSEIAA 134 (286)
Q Consensus 122 f~rFp~L~~~v~~ 134 (286)
..|||+|++.+..
T Consensus 32 s~ryp~lre~im~ 44 (57)
T d1x3zb1 32 SARYPQLREHIMA 44 (57)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HHhhHHHHHHHHh
Confidence 5799999998864
No 5
>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Chromobacterium violaceum [TaxId: 536]}
Probab=14.56 E-value=75 Score=25.83 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=35.1
Q ss_pred hhhhhh-c--cCcCCCCCHHHHHHHHHhcCCCCC---CCCCCHHHHHHHHH
Q 042048 43 GLFEVI-M--LPFDRHLSPQNVRKVVSEADGYQP---HLIAPEQGYRRLID 87 (286)
Q Consensus 43 ~f~~~i-~--~~~~~~l~~~dI~~~i~n~~G~~~---plFvp~~aFe~Lvk 87 (286)
.|-..+ . ++.++-=..++|...++..+||+. |||+|...|-.++.
T Consensus 56 eyl~gL~~L~l~~d~IPql~~in~~L~~~TGw~~~~V~Gli~~~~Ff~~LA 106 (277)
T d1ltza_ 56 EFLEGLERLEVDADRVPDFNKLNEKLMAATGWKIVAVPGLIPDDVFFEHLA 106 (277)
T ss_dssp HHHHHHHHHTCCSSSCCCHHHHHHHHHHHHSCEEEEESSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCCChHHHHHHHHHhcCeeEEecCCcCCHHHHHHHHh
Confidence 455556 3 355544477899999999999984 99999999988875
No 6
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=14.25 E-value=37 Score=27.20 Aligned_cols=46 Identities=13% Similarity=-0.042 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhhhhhhcCcccccccCcccc---chhHHHHhHHhhhhhh
Q 042048 3 EIATGMKTLMDFPHLGGGLIVSLEVGDWDG---HQKRSLLIDHGLFEVI 48 (286)
Q Consensus 3 ~~~~~~~~l~~~~~~~~g~~~~~~~~el~g---GaRI~~if~~~f~~~i 48 (286)
.+.+.++=.++.|+.+.|+.--.+-+.=.| |++|...+++.|++..
T Consensus 117 ~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~yp~~~ 165 (245)
T d1tuba1 117 LVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165 (245)
T ss_dssp HHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHhccccc
Confidence 567888888899999999987666554332 4999999999999987
No 7
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=13.77 E-value=35 Score=27.21 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhhhhhhcCcccccccCcc--cc-chhHHHHhHHhhhhhh--c---cCcCC--CCCHHHH------HHHHH
Q 042048 3 EIATGMKTLMDFPHLGGGLIVSLEVGDW--DG-HQKRSLLIDHGLFEVI--M---LPFDR--HLSPQNV------RKVVS 66 (286)
Q Consensus 3 ~~~~~~~~l~~~~~~~~g~~~~~~~~el--~g-GaRI~~if~~~f~~~i--~---~~~~~--~l~~~dI------~~~i~ 66 (286)
++.+.++=.++.|+.+.|+.--.+-+.- +| |++|...+++.|++.. . .|+.. ....+-- ...++
T Consensus 115 ~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp~~~~~~~~V~P~~~~~~vvvqpYNtvLsl~~L~~ 194 (243)
T d1tubb1 115 SVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVE 194 (243)
T ss_dssp HHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEECCCCCCTTCSCSSTTHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcccceEEEEeecCCcccCcccccchHHHHhHHHHHh
Confidence 5677888888999999998866664332 22 5999999999999876 2 25431 1111111 11222
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccccCCCch
Q 042048 67 EADGYQPHLIAPEQGYRRLIDSALNYFRGPAEASVDAVHFVLKELVRRSIGETQELKRFP 126 (286)
Q Consensus 67 n~~G~~~plFvp~~aFe~Lvk~qI~~l~~Ps~~cv~~V~~~l~~iv~~~~~~~~~f~rFp 126 (286)
++.+ -..+--+|...+..++. .+..|+ ++.+..++-..+..+ ..--|||
T Consensus 195 ~ad~---v~~~dN~al~~i~~~~~-~~~~~s---~~~~N~~Ia~~ls~~----T~s~RFP 243 (243)
T d1tubb1 195 NTDE---TYCIDNEALYDICFRTL-KLTTPT---YGDLNHLVSATMSGV----TTCLRFP 243 (243)
T ss_dssp SEEE---ECCCCHHHHHHHTTTTS-CCSSCC---HHHHHHHHHHHHHHH----HTBTTBS
T ss_pred hCCe---EEEeeHHHHHHHHHHhc-CCCCCC---HHHHHHHHHHHHHhh----hhcccCC
Confidence 2222 23344566666666553 456777 566666655544433 2356776
No 8
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=13.15 E-value=1.5e+02 Score=20.39 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 042048 54 RHLSPQNVRKVVSEADGYQPHLIAPEQGYRRLID 87 (286)
Q Consensus 54 ~~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk 87 (286)
.++|-.+||+.+++ |.....|||....+.|-+
T Consensus 124 ~~ISST~IR~~i~~--g~~i~~lVP~~V~~yI~e 155 (163)
T d1o6ba_ 124 SFLSSSIVKEVARY--DGSVSEFVPPEVELALQQ 155 (163)
T ss_dssp TTCCHHHHHHHHHT--TCCCTTTSCHHHHHHHHH
T ss_pred hccCHHHHHHHHHc--CCChHHhCCHHHHHHHHH
Confidence 37899999998875 667889999998877744
No 9
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}
Probab=13.05 E-value=1.1e+02 Score=23.03 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhcCCCCCC-CCCCHHHHHHHHH
Q 042048 55 HLSPQNVRKVVSEADGYQPH-LIAPEQGYRRLID 87 (286)
Q Consensus 55 ~l~~~dI~~~i~n~~G~~~p-lFvp~~aFe~Lvk 87 (286)
++|-.+||+.+++ |..+| .|+|.++.+.|.+
T Consensus 185 ~ISST~IR~~l~~--G~~ip~~l~~p~V~~yI~~ 216 (223)
T d1jhda2 185 LLSGTKVREMLGQ--GIAPPPEFSRPEVAKILMD 216 (223)
T ss_dssp CCCHHHHHHHHHT--TCCCCTTTCCHHHHHHHHH
T ss_pred eeCHHHHHHHHHC--cCCCCcccCCHHHHHHHHH
Confidence 6899999999986 88864 6888888887765
No 10
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=13.05 E-value=1.1e+02 Score=19.35 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Q 042048 55 HLSPQNVRKVVSEADGYQPHLIAPEQGYRRLIDSA 89 (286)
Q Consensus 55 ~l~~~dI~~~i~n~~G~~~plFvp~~aFe~Lvk~q 89 (286)
+.++++++.+++.... ...|-+++.-|..++.++
T Consensus 48 ~~t~~el~~~i~~~D~-d~~G~I~f~eFl~im~~k 81 (82)
T d1wrka1 48 NPTPEELQEMIDEVDE-DGSGTVDFDEFLVMMVRS 81 (82)
T ss_dssp CCCHHHHHHHHHTTCT-TCCSSBCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCC-CCCCeEeHHHHHHHHHhh
Confidence 5688999999988764 456899999998887653
Done!