BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042050
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WAF|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain R6)
Length = 682
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 232 VSGDAVFTKPFCLEYKF---QKKGWGDLLMLAHPLHLNMLSIDDSDVSVLEDFKYKSIDG 288
++ + V P +E + K G GDL+ P +N ++I DSD+S+L Y+ G
Sbjct: 535 IANNGVRVAPRIVEGIYGNNDKGGLGDLIQQLQPTEMNKVNISDSDMSILHQGFYQVAHG 594
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 300 LKPHSVSVTWHSINGNREESYDEIISALSKDVKA-LNSTPITTN------SSYFYGKXXX 352
+K H + INGN + + DEI+S S D+ A L +TP T ++F G
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRG---- 74
Query: 353 XXXXXXXXXEEVSFPDVIPAIRKYLRETIEPW 384
+E++FP + ++ ++ W
Sbjct: 75 ---CGMEYGKEIAFPQFLDGFKQLATSELKKW 103
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 300 LKPHSVSVTWHSINGNREESYDEIISALSKDV-KALNSTPITTN 342
+K H + INGN + + DEI+S S D+ K L +TP T
Sbjct: 19 IKRHKFMFDYLDINGNGQITLDEIVSKASDDICKNLGATPAQTQ 62
>pdb|1TRE|A Chain A, The Structure Of Triosephosphate Isomerase From
Escherichia Coli Determined At 2.6 Angstrom Resolution
pdb|1TRE|B Chain B, The Structure Of Triosephosphate Isomerase From
Escherichia Coli Determined At 2.6 Angstrom Resolution
Length = 255
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 24/59 (40%)
Query: 186 SPISLSQNGVSLLTSGGFTGIIRIAVLPDFDPQYQSILDRFSSCYPVSGDAVFTKPFCL 244
S I L V+L SG FTG A+L D QY I Y D + K F +
Sbjct: 57 SHIMLGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAV 115
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 364 VSFPDVIPAIRKYLRETIEPWLDGTFNGNGFLYDGKWGGIVTKQGSLD 411
VSF D I + LR T++ L+ FN LYD G +TK+ LD
Sbjct: 119 VSFEDFIKGLSILLRGTVQEKLNWAFN----LYDINKDGYITKEEMLD 162
>pdb|1TMH|A Chain A, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|B Chain B, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|C Chain C, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
pdb|1TMH|D Chain D, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal
Structure Of A Chimeric E. Coli Tim Having The Eighth
(beta-alpha)-unit Replaced By The Equivalent Unit Of
Chicken Tim
Length = 254
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 23/59 (38%)
Query: 186 SPISLSQNGVSLLTSGGFTGIIRIAVLPDFDPQYQSILDRFSSCYPVSGDAVFTKPFCL 244
S I L V L SG FTG A+L D QY I Y D + K F +
Sbjct: 57 SHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAV 115
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 300 LKPHSVSVTWHSINGNREESYDEIISALSKDVKA-LNSTPITTN------SSYFYGKXXX 352
+K H + INGN + + DEI+S S D+ A L +TP T ++F G
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRG---- 74
Query: 353 XXXXXXXXXEEVSFPDVIPAIRKYLRETIEPW 384
+E++FP + ++ ++ W
Sbjct: 75 ---CGMEYGKEIAFPQFLDGWKQLATSELKKW 103
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 300 LKPHSVSVTWHSINGNREESYDEIISALSKDVKA-LNSTPITTN------SSYFYGKXXX 352
+K H + INGN + + DEI+S S D+ A L +TP T ++F G
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRG---- 74
Query: 353 XXXXXXXXXEEVSFPDVIPAIRKYLRETIEPW 384
+E++FP + ++ ++ W
Sbjct: 75 ---CGMEYGKEIAFPQFLDGWKQLATSELKKW 103
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 300 LKPHSVSVTWHSINGNREESYDEIISALSKDVKA-LNSTPITTN------SSYFYGKXXX 352
+K H + INGN + + DEI+S S D+ A L +TP T ++F G
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRG---- 74
Query: 353 XXXXXXXXXEEVSFPDVIPAIRKYLRETIEPW 384
+E++FP + ++ ++ W
Sbjct: 75 ---CGMEYGKEIAFPQFLDGWKQLATSELKKW 103
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 300 LKPHSVSVTWHSINGNREESYDEIISALSKDVKA-LNSTPITTN------SSYFYGKXXX 352
+K H + INGN + + DEI+S S D+ A L +TP T ++F G
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRG---- 74
Query: 353 XXXXXXXXXEEVSFPDVIPAIRKYLRETIEPW 384
+E++FP + ++ ++ W
Sbjct: 75 ---CGMEYGKEIAFPQFLDGWKQLATSELKKW 103
>pdb|4IOT|A Chain A, High-resolution Structure Of Triosephosphate Isomerase
From E. Coli
pdb|4IOT|B Chain B, High-resolution Structure Of Triosephosphate Isomerase
From E. Coli
Length = 255
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 23/59 (38%)
Query: 186 SPISLSQNGVSLLTSGGFTGIIRIAVLPDFDPQYQSILDRFSSCYPVSGDAVFTKPFCL 244
S I L V L SG FTG A+L D QY I Y D + K F +
Sbjct: 57 SHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAV 115
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 619 GREGVGEGWKGFVYSLEGIYDKESALQKIRNLNGYDDG 656
G E +GEG G VY + Y + AL+KIR L D+G
Sbjct: 6 GLEKIGEGTYGVVYKAQNNYGETFALKKIR-LEKEDEG 42
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 619 GREGVGEGWKGFVYSLEGIYDKESALQKIRNLNGYDDG 656
G E +GEG G VY + Y + AL+KIR L D+G
Sbjct: 6 GLEKIGEGTYGVVYKAQNNYGETFALKKIR-LEKEDEG 42
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 619 GREGVGEGWKGFVYSLEGIYDKESALQKIRNLNGYDDG 656
G E +GEG G VY + Y + AL+KIR L D+G
Sbjct: 6 GLEKIGEGTYGVVYKAQNNYGETFALKKIR-LEKEDEG 42
>pdb|3KPX|A Chain A, Crystal Structure Analysis Of Photoprotein Clytin
Length = 198
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 297 SWVLKPHSVSVTWHSINGNREESYDEIISALSKDVKA-LNSTPITTNS-----SYFYGKX 350
WV + H + INGN + + DEI+S S D+ A L +TP T F+ K
Sbjct: 20 KWVNR-HKFMFNFLDINGNGKITLDEIVSKASDDICAKLGATPAQTQRHQEAVEAFFKK- 77
Query: 351 XXXXXXXXXXXEEVSFPDVIPAIRKYLRETIEPW 384
+EV FP + ++ + ++ W
Sbjct: 78 -----IGLDYGKEVEFPAFVNGWKELAKHDLKLW 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,732,050
Number of Sequences: 62578
Number of extensions: 880802
Number of successful extensions: 1702
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1694
Number of HSP's gapped (non-prelim): 16
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)