Query 042050
Match_columns 691
No_of_seqs 153 out of 345
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 23:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042050.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042050hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fyxa1 d.58.57.1 (A:1-130) Pu 16.3 23 0.0017 30.0 1.4 28 470-498 89-116 (130)
2 d2fzpa1 d.345.1.1 (A:193-317) 7.4 65 0.0048 26.9 1.2 25 379-407 5-29 (125)
3 d1g9ga_ a.102.1.2 (A:) Process 6.4 1.1E+02 0.0083 31.5 2.7 64 450-521 10-74 (629)
4 d1l1ya_ a.102.1.2 (A:) Process 6.3 1.2E+02 0.0084 31.5 2.7 63 449-521 13-79 (642)
5 d1qaza_ a.102.3.1 (A:) Alginat 5.6 5.1E+02 0.037 24.5 7.2 75 429-532 140-218 (351)
6 d1nixa_ g.3.6.2 (A:) Hainantox 5.3 80 0.0058 20.0 0.4 13 676-688 1-13 (33)
7 d2gyqa1 a.25.1.4 (A:1-160) Hyp 5.2 2.2E+02 0.016 24.5 3.6 31 350-380 117-147 (160)
8 d1j3ga_ d.118.1.1 (A:) AmpD pr 5.1 72 0.0053 28.4 0.1 17 458-475 155-173 (187)
9 d2fj8a1 g.3.13.1 (A:64-122) Bo 5.0 68 0.005 23.7 -0.1 13 471-483 42-54 (59)
10 d2ajta1 b.43.2.2 (A:329-498) L 4.9 1.4E+02 0.0099 26.4 1.9 25 571-597 6-30 (170)
No 1
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=16.29 E-value=23 Score=29.96 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCCcccCCCcCCCcccccCccccCCCCCc
Q 042050 470 NYPRLRCFDLYKLHSWAGGLTEFADGRNQ 498 (691)
Q Consensus 470 ~FP~~R~FDwy~GHSWA~Gl~~~~dGknQ 498 (691)
.||.+|.+-| .||-|+.|.+.+.=|++.
T Consensus 89 ~f~~lk~~~w-~~~~Ws~gY~~~SvG~~~ 116 (130)
T d2fyxa1 89 AFPHLKQPHW-GGNLWNPSYCVLTVSEHT 116 (130)
T ss_dssp HCGGGCCGGG-TTSSCCSCEEEECCCTTH
T ss_pred hCchhhhhcc-CCccccCcEEEEccCCCC
Confidence 4899998886 789999999998888643
No 2
>d2fzpa1 d.345.1.1 (A:193-317) E3 ubiquitin-protein ligase NRDP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.44 E-value=65 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.566 Sum_probs=19.1
Q ss_pred HHhhhhhcCCCCCCceeeecccceeeecC
Q 042050 379 ETIEPWLDGTFNGNGFLYDGKWGGIVTKQ 407 (691)
Q Consensus 379 ~~l~~~l~~~~~~~~l~YD~~WgGivs~~ 407 (691)
..+-+|.++ -|+.-=++|||+||.+
T Consensus 5 ~evm~W~~~----Lp~A~Vt~WG~mISTP 29 (125)
T d2fzpa1 5 NEILEWVNS----LQPARVTRWGGMISTP 29 (125)
T ss_dssp HHHHHHHHH----SEEEEECCGGGEESSC
T ss_pred HHHHHHHcc----CCcceeccccccccCc
Confidence 345677642 4678889999999998
No 3
>d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F) {Clostridium cellulolyticum [TaxId: 1521]}
Probab=6.39 E-value=1.1e+02 Score=31.49 Aligned_cols=64 Identities=25% Similarity=0.234 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCcccCCCcCCCcccccCccccCCCCCccchhHHHHHHHHH-HHHhhHhCCh
Q 042050 450 RPQAYSLMADFMNLGRRENSNYPRLRCFDLYKLHSWAGGLTEFADGRNQESTSEAVNAYYSA-ALMGLAYGDT 521 (691)
Q Consensus 450 ~~~V~~LiRDvANps~~~D~~FP~~R~FDwy~GHSWA~Gl~~~~dGknQESsSEd~n~~yal-~LwG~vtgd~ 521 (691)
.+-...|-.+|-||. .-||--.- =+| ||=-+=+-+-.|=- -|.+||++-.|.=| +|+|++|||=
T Consensus 10 ~~rFl~~y~ki~dpa---nGYFS~eG--iPY--HSvETliVEAPDyG-HeTTSEA~SY~lWLEA~yG~~Tgdw 74 (629)
T d1g9ga_ 10 QDRFESMYSKIKDPA---NGYFSEQG--IPY--HSIETLMVEAPDYG-HVTTSEAMSYYMWLEAMHGRFSGDF 74 (629)
T ss_dssp HHHHHHHHHHHHCGG---GCCBCTTS--CBC--SBSCSSCCSSSSST-TEEEHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCCc---ccccCCCC--Ccc--cceeeEEEecCCCC-chhHHHHHHHHHHHHHHhccccCCc
Confidence 334445555666664 12442110 111 44444444443321 49999999887665 5789999993
No 4
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F) {Clostridium thermocellum [TaxId: 1515]}
Probab=6.30 E-value=1.2e+02 Score=31.51 Aligned_cols=63 Identities=24% Similarity=0.201 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCCcccCCCcCCC---cccccCccccCCCCCccchhHHHHHHHHH-HHHhhHhCCh
Q 042050 449 YRPQAYSLMADFMNLGRRENSNYPRLRCFDLYKL---HSWAGGLTEFADGRNQESTSEAVNAYYSA-ALMGLAYGDT 521 (691)
Q Consensus 449 ~~~~V~~LiRDvANps~~~D~~FP~~R~FDwy~G---HSWA~Gl~~~~dGknQESsSEd~n~~yal-~LwG~vtgd~ 521 (691)
+.+-...|-.+|-||. .-|| ...+| ||=-+=+-+-.|=- -|.+||++-.|.=| +|.|++|||=
T Consensus 13 Y~~rFl~~y~ki~dpa---nGYF------S~~eGIPYHSvETLiVEAPDyG-HeTTSEA~SY~lWLEA~yG~~Tgdw 79 (642)
T d1l1ya_ 13 YKDLFLELYGKIKDPK---NGYF------SPDEGIPYHSIETLIVEAPDYG-HVTTSEAFSYYVWLEAMYGNLTGNW 79 (642)
T ss_dssp HHHHHHHHHHHHHCGG---GCSB------CTTTCCBCSBSCSCCCSSSSST-TEEEHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccCCC---CCcc------cCCCCCccceeeeEEEecCCCC-chhHHHHHHHHHHHHHHhccccCCc
Confidence 4444555666666664 2244 33334 66555555544422 59999999887665 5789999984
No 5
>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1 [TaxId: 28214]}
Probab=5.56 E-value=5.1e+02 Score=24.51 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhhcChhhhhh----chHHHHHHHHHhcCCCCCCCCCCCcccCCCcCCCcccccCccccCCCCCccchhHH
Q 042050 429 GYFLYAIAVLVKIDPVWGRK----YRPQAYSLMADFMNLGRRENSNYPRLRCFDLYKLHSWAGGLTEFADGRNQESTSEA 504 (691)
Q Consensus 429 GY~I~AAAvia~~Dp~W~~~----~~~~V~~LiRDvANps~~~D~~FP~~R~FDwy~GHSWA~Gl~~~~dGknQESsSEd 504 (691)
++-+..|+.+.+-.+.|-.+ -++|+..+++++-+... . . +...+-| +
T Consensus 140 l~~~a~A~e~l~~~~~~~~~d~~~i~~Wf~~~~~~~~~~~~--~-~------~~~~nNH--------------------~ 190 (351)
T d1qaza_ 140 AATAAFALSTMMAEPNVDTAQRERVVKWLNRVARHQTSFPG--G-D------TSCCNNH--------------------S 190 (351)
T ss_dssp HHHHHHHHHTTTTCSSSCHHHHHHHHHHHHHHHHHHHTSCC--C-T------TTTTSHH--------------------H
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccccc--c-c------cccccCH--------------------H
Confidence 55555666666666777643 45788888888765321 1 1 1111222 1
Q ss_pred HHHHHHHHHHhhHhCChhHHHHHHHHHH
Q 042050 505 VNAYYSAALMGLAYGDTHLVAIGSTLTA 532 (691)
Q Consensus 505 ~n~~yal~LwG~vtgd~~l~~~g~llla 532 (691)
+-...++.++|.++||++|.+.|...+-
T Consensus 191 ~w~~~~v~aigv~~~d~~l~~~a~~~~~ 218 (351)
T d1qaza_ 191 YWRGQEATIIGVISKDDELFRWGLGRYV 218 (351)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334578889999999999999887664
No 6
>d1nixa_ g.3.6.2 (A:) Hainantoxin-I {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=5.29 E-value=80 Score=20.04 Aligned_cols=13 Identities=54% Similarity=0.920 Sum_probs=10.3
Q ss_pred hhcCCCceeeecc
Q 042050 676 ECSGGGKFCWFGH 688 (691)
Q Consensus 676 ~~~~~~~~~~~~~ 688 (691)
+|-|||+.|.-|.
T Consensus 1 eckgfg~sc~pgk 13 (33)
T d1nixa_ 1 ECKGFGKSCVPGK 13 (33)
T ss_dssp CCBCSSCBCCTTT
T ss_pred CCcccccccCCCC
Confidence 5899999887664
No 7
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=5.20 E-value=2.2e+02 Score=24.54 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 042050 350 LIARAARLALIAEEVSFPDVIPAIRKYLRET 380 (691)
Q Consensus 350 ~l~k~A~l~~ia~~l~~~~~~~~~l~~Lk~~ 380 (691)
.++.|..|+..|+++|..+.++.+...|++.
T Consensus 117 EIA~YgtL~a~A~~lG~~~~a~lL~~~L~EE 147 (160)
T d2gyqa1 117 EIARYGTLIAWAEELGHDDIVRFLTTNLNEE 147 (160)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5788999999999999888777665555544
No 8
>d1j3ga_ d.118.1.1 (A:) AmpD protein {Citrobacter freundii [TaxId: 546]}
Probab=5.06 E-value=72 Score=28.43 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=11.7
Q ss_pred HHhcCCCCCCCC--CCCccc
Q 042050 458 ADFMNLGRRENS--NYPRLR 475 (691)
Q Consensus 458 RDvANps~~~D~--~FP~~R 475 (691)
+||| |.|+.|| +||.-|
T Consensus 155 ~dia-p~RK~DPG~~F~W~~ 173 (187)
T d1j3ga_ 155 CNIA-PERKTDPGPSFDWAR 173 (187)
T ss_dssp STTS-CTTCSSSSCCSCHHH
T ss_pred hhcC-CCCCCCCCCCCCHHH
Confidence 4676 7777787 787544
No 9
>d2fj8a1 g.3.13.1 (A:64-122) Bowman-Birk inhibitor, BBI {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=5.00 E-value=68 Score=23.65 Aligned_cols=13 Identities=31% Similarity=0.306 Sum_probs=11.2
Q ss_pred CCcccCCCcCCCc
Q 042050 471 YPRLRCFDLYKLH 483 (691)
Q Consensus 471 FP~~R~FDwy~GH 483 (691)
-|++|-+|||+|.
T Consensus 42 P~r~~C~D~~~g~ 54 (59)
T d2fj8a1 42 PSRRVCIDSYFGP 54 (59)
T ss_dssp TTCEEECCCEESS
T ss_pred CCCeEEEeeeecC
Confidence 5899999999884
No 10
>d2ajta1 b.43.2.2 (A:329-498) L-arabinose isomerase AraA {Escherichia coli [TaxId: 562]}
Probab=4.94 E-value=1.4e+02 Score=26.38 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.6
Q ss_pred cceeecCCCCcccceeeeecccCCCCc
Q 042050 571 DSGLWFAPPDWRECRLGIQLLPLSPIS 597 (691)
Q Consensus 571 d~~TwFg~~~~~e~I~GI~mLPitP~S 597 (691)
|||-=|.+. .|.|.|=|||++.|.-
T Consensus 6 dYty~f~~~--~~~vLg~Hmlev~psi 30 (170)
T d2ajta1 6 DYTYHFEKG--NDLVLGSHMLEVCPSI 30 (170)
T ss_dssp EEEEECCTT--CCEEEEECSSCCCGGG
T ss_pred hhhcccCCC--CceEehhhccccCHHH
Confidence 677778766 4789999999999963
Done!