BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042055
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 38 SPAESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK--AEIAFKLISEAYT 95
S S ++Y +LGV A+ E I+K Y KLAL+ HPDKN K AE FKL+SEAY
Sbjct: 2 SSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61
Query: 96 CLSDTAKRRAFN 107
LSD+ KR ++
Sbjct: 62 VLSDSKKRSLYD 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 38 SPAESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK--AEIAFKLISEAYT 95
S S +D+Y +L V +A+ E I+K Y KLAL+ HPDKN K AE FK ++EAY
Sbjct: 2 SSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61
Query: 96 CLSDTAKRRAFN 107
LSD KR ++
Sbjct: 62 VLSDAKKRDIYD 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAF 106
+Y +LGV + A+ I+K +HKLA++ HPDKNK AE F+ I+EAY LSD +R+ +
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 107 N 107
+
Sbjct: 69 D 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK-AEIAFKLISEAYTCLSDTAKRR 104
D+Y +LGV + A IRK Y +LA++ HPD+N+ K AE FK I EAY L+D+ KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 105 AFN 107
A++
Sbjct: 64 AYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK-AEIAFKLISEAYTCLSDTAKRR 104
D+Y +LGV + A IRK Y +LA++ HPD+N+ K AE FK I EAY L+D+ KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 105 AFN 107
A++
Sbjct: 64 AYD 66
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRA 105
D+Y+ LG+ A+ E I++ Y + AL+ HPDKNK AE FK I+EAY LSD KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 106 FN 107
F+
Sbjct: 64 FD 65
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 58.5 bits (140), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRA 105
D+Y +LGV A+ E ++K Y +LAL+ HPDKN A AFK I AY LS+ KR+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 106 FN 107
++
Sbjct: 68 YD 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 56.6 bits (135), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRR 104
D+Y +LGV + A IRK Y +LA++ HPD+N+ ++AE FK I EAY L+D+ KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 105 AFN 107
A++
Sbjct: 64 AYD 66
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRR 104
D YR+LGV A+ I+K Y KLA + HPDKNK AE F IS+AY LS+ KR
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 105 AFN 107
++
Sbjct: 77 NYD 79
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDKN-KHRKAEIAFKLISEAYTCLSDTAKRRA 105
Y +LG+D+ AT + I+K Y KLAL+ HPDKN + +A FK I+ A+ L+D KR
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 106 FN 107
++
Sbjct: 79 YD 80
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAF 106
+Y +LGV AT E ++K Y KLAL+ HPDKN + + FK IS+AY LSD KR +
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK--FKQISQAYEVLSDAKKRELY 65
Query: 107 N 107
+
Sbjct: 66 D 66
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR-KAEIAFKLISEAYTCLSDTAKRR 104
D+Y++LGV A+ + I+K Y++LA + HPD NK KA+ F ++EAY LSD KR+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 105 AFN 107
++
Sbjct: 68 QYD 70
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK--AEIAFKLISEAYTCLSDTAKRR 104
+Y +L V A+ + I+K Y + ALQ HPDKN K AE FK ++EAY LSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 105 AFN 107
++
Sbjct: 64 IYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 50.8 bits (120), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAF 106
+Y +LGV +A+ ++K Y K+AL+ HPDKN + FK IS+AY LSD KR+ +
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ--FKQISQAYEVLSDEKKRQIY 67
Query: 107 N 107
+
Sbjct: 68 D 68
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 42 SHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTA 101
S D+Y ++GV ++TI+ Y +LA + HPD +K AE FK ++EA+ LSD
Sbjct: 2 SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 61
Query: 102 KRRAFN 107
+R ++
Sbjct: 62 RRAEYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRA 105
D+Y +LGV ++TI+ Y +LA + HPD +K AE FK ++EA+ L D +R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 106 FN 107
++
Sbjct: 89 YD 90
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 43 HFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR-KAEIAFKLISEAYTCLSDTA 101
H ++Y LLGV + A+ IR+ + KLAL+LHPDKN + A F I+ AY L D
Sbjct: 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDED 78
Query: 102 KRRAFN 107
R+ ++
Sbjct: 79 LRKKYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR-KAEIAFKLISEAYTCLSDTAKRR 104
++Y LLGV + A+ IR+ + KLAL+LHPDKN + A F I+ AY L D R+
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 105 AFN 107
++
Sbjct: 63 KYD 65
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH-------RKAEIAFKLISEAYTCLS 98
DWY +LG D A I ++++Y KL L HPDK + F I +A+ L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 99 DTAKRRAFNLER 110
+ +R ++L+R
Sbjct: 71 NEETKREYDLQR 82
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEI----------AFKLISEAYT 95
DWY +LG D A + ++++Y KL L HPDK + A++ F I +A+
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDK---QSADVPAGTMEECMQKFIEIDQAWK 73
Query: 96 CLSDTAKRRAFNLER 110
L + ++ ++L+R
Sbjct: 74 ILGNEETKKKYDLQR 88
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAF 106
Y LLGV A + ++K Y K AL+ HPDK + FK ISEA+ L+D KR
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK--FKEISEAFEILNDPQKR--- 64
Query: 107 NLERWKKFCIECNR 120
E + ++ +E R
Sbjct: 65 --EIYDQYGLEAAR 76
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCL 97
D + +LGV A+ + + K Y KLA+ LHPDK +E AFK + A T L
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 48 YRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIA--FKLISEAYTCLSDTAKRRA 105
Y LLGV AT I+ Y++ HPD+N AE A F IS+AY L RR
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG-SAEAAERFTRISQAYVVLGSATLRRK 78
Query: 106 FN 107
++
Sbjct: 79 YD 80
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH----RKAEIAFKLISEAYTCLSDTA 101
D+Y++LGV A + I K Y KLALQ HPD ++ +KAE F I+ A LSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 102 KRRAFN 107
R+ F+
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH----RKAEIAFKLISEAYTCLSDTA 101
D+Y++LGV A + I K Y KLALQ HPD ++ +KAE F I+ A LSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 102 KRRAFN 107
R+ F+
Sbjct: 443 MRKKFD 448
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKN-KHRKAEIAFKLISEAYTCLSDTAKRR 104
D+Y LLG DE +++E I + AL+ HPDK+ ++ KA F+ + +A L++ R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 105 AFNLERWKK 113
++ W++
Sbjct: 81 RYD--HWRR 87
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 48 YRLLGVD-EEATIETIRKRYHKLALQLHPD--KNKHRK--AEIAFKLISEAYTCLSD 99
Y +L V+ EE + + K Y LA + HPD KNK K AE F++I+ AY L D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1
J-Domain
Length = 106
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 61 TIRKRYHKLALQLHPDK--------NKHRKAEIAFKLISEAY 94
+RK Y + L LHPDK N+ AE F+L+ EA+
Sbjct: 56 AVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 43 HFIDW-----YRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLI 90
H + W ++ +G+ + T E ++K Y K L +HPDK + E K+I
Sbjct: 110 HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMI 162
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 43 HFIDW-----YRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLI 90
H + W ++ +G+ + T E ++K Y K L +HPDK + E K+I
Sbjct: 42 HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMI 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,248,601
Number of Sequences: 62578
Number of extensions: 270049
Number of successful extensions: 573
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 34
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)