Query 042055
Match_columns 245
No_of_seqs 260 out of 1699
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 13:31:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.5E-39 3.1E-44 297.2 6.0 182 44-228 3-201 (371)
2 KOG0712 Molecular chaperone (D 100.0 1.3E-32 2.7E-37 248.6 8.7 176 44-231 3-191 (337)
3 PRK14296 chaperone protein Dna 100.0 1.3E-31 2.9E-36 248.3 6.5 180 45-227 4-209 (372)
4 PTZ00037 DnaJ_C chaperone prot 100.0 1.9E-30 4.1E-35 243.5 7.2 174 44-230 27-212 (421)
5 PRK14287 chaperone protein Dna 100.0 1.2E-30 2.5E-35 242.0 4.4 179 45-226 4-197 (371)
6 PRK14298 chaperone protein Dna 100.0 1.6E-30 3.6E-35 241.4 5.2 180 45-226 5-200 (377)
7 PRK14288 chaperone protein Dna 100.0 2.3E-30 5E-35 239.8 5.7 177 45-227 3-195 (369)
8 PRK14286 chaperone protein Dna 100.0 6E-30 1.3E-34 237.3 6.6 177 45-226 4-205 (372)
9 PRK14276 chaperone protein Dna 100.0 3.6E-30 7.9E-35 239.4 4.9 180 45-227 4-206 (380)
10 PRK14280 chaperone protein Dna 100.0 7E-30 1.5E-34 237.2 6.2 180 45-227 4-203 (376)
11 PRK14278 chaperone protein Dna 100.0 4.4E-30 9.5E-35 238.7 4.3 179 45-226 3-198 (378)
12 PRK14279 chaperone protein Dna 100.0 1.4E-29 3E-34 236.3 7.3 178 45-227 9-229 (392)
13 PRK14282 chaperone protein Dna 100.0 1.3E-29 2.8E-34 234.9 6.3 180 45-227 4-212 (369)
14 PRK14285 chaperone protein Dna 100.0 1.5E-29 3.2E-34 234.2 4.1 178 45-227 3-202 (365)
15 PRK14277 chaperone protein Dna 100.0 2.4E-29 5.3E-34 234.3 5.1 179 45-226 5-214 (386)
16 PRK10767 chaperone protein Dna 100.0 8E-29 1.7E-33 229.8 6.8 177 45-226 4-197 (371)
17 PRK14283 chaperone protein Dna 100.0 1.3E-28 2.7E-33 229.0 7.9 180 44-226 4-205 (378)
18 PRK14301 chaperone protein Dna 99.9 4.9E-29 1.1E-33 231.3 4.5 178 45-227 4-200 (373)
19 PRK14295 chaperone protein Dna 99.9 1.9E-28 4.1E-33 228.4 7.3 178 45-227 9-222 (389)
20 TIGR02349 DnaJ_bact chaperone 99.9 1.1E-28 2.4E-33 227.5 5.2 178 46-226 1-202 (354)
21 PRK14284 chaperone protein Dna 99.9 1.9E-28 4.1E-33 228.6 6.0 178 45-227 1-214 (391)
22 PRK14281 chaperone protein Dna 99.9 9E-29 1.9E-33 231.2 3.5 179 45-227 3-222 (397)
23 PRK14294 chaperone protein Dna 99.9 2E-28 4.2E-33 226.8 5.6 179 44-227 3-200 (366)
24 PRK14297 chaperone protein Dna 99.9 1.2E-28 2.6E-33 229.3 4.0 180 45-227 4-208 (380)
25 PRK14300 chaperone protein Dna 99.9 3.7E-28 8.1E-33 225.3 4.7 177 45-226 3-200 (372)
26 PRK14291 chaperone protein Dna 99.9 7.9E-28 1.7E-32 223.9 5.8 176 45-226 3-210 (382)
27 PRK14293 chaperone protein Dna 99.9 7.6E-28 1.6E-32 223.5 4.6 179 45-226 3-202 (374)
28 PRK14290 chaperone protein Dna 99.9 8.2E-28 1.8E-32 222.6 3.2 179 45-226 3-207 (365)
29 PRK14289 chaperone protein Dna 99.9 6.6E-27 1.4E-31 218.0 6.2 179 45-226 5-213 (386)
30 PRK14292 chaperone protein Dna 99.9 4.4E-27 9.4E-32 218.2 2.9 181 44-226 1-199 (371)
31 KOG0713 Molecular chaperone (D 99.9 1.5E-25 3.3E-30 200.9 7.9 73 44-116 15-88 (336)
32 KOG0715 Molecular chaperone (D 99.9 3.2E-25 6.9E-30 199.0 5.6 167 45-226 43-219 (288)
33 KOG0718 Molecular chaperone (D 99.8 5E-20 1.1E-24 170.6 9.8 104 41-168 5-112 (546)
34 KOG0716 Molecular chaperone (D 99.8 8.8E-20 1.9E-24 159.4 7.5 71 44-114 30-101 (279)
35 PRK14299 chaperone protein Dna 99.8 7.8E-20 1.7E-24 164.7 7.1 69 45-113 4-72 (291)
36 PF00226 DnaJ: DnaJ domain; I 99.8 2.2E-19 4.8E-24 126.0 6.2 62 46-107 1-64 (64)
37 KOG0717 Molecular chaperone (D 99.8 2E-19 4.4E-24 166.5 7.5 77 41-117 4-82 (508)
38 KOG0691 Molecular chaperone (D 99.8 3.6E-19 7.7E-24 159.6 7.1 71 44-114 4-75 (296)
39 PRK10266 curved DNA-binding pr 99.7 1.7E-18 3.7E-23 157.0 7.6 68 44-111 3-70 (306)
40 PTZ00341 Ring-infected erythro 99.7 7.2E-18 1.6E-22 168.0 7.7 72 43-114 571-642 (1136)
41 smart00271 DnaJ DnaJ molecular 99.7 2.4E-17 5.2E-22 113.9 5.4 57 45-101 1-59 (60)
42 KOG0719 Molecular chaperone (D 99.7 5.2E-17 1.1E-21 139.3 6.1 67 44-110 13-82 (264)
43 cd06257 DnaJ DnaJ domain or J- 99.7 1E-16 2.3E-21 108.7 6.0 54 46-99 1-55 (55)
44 COG2214 CbpA DnaJ-class molecu 99.6 4.9E-16 1.1E-20 130.9 7.0 67 43-109 4-72 (237)
45 KOG0721 Molecular chaperone (D 99.6 5.6E-16 1.2E-20 131.7 6.7 70 42-111 96-166 (230)
46 TIGR03835 termin_org_DnaJ term 99.6 5.4E-16 1.2E-20 151.8 7.4 69 45-113 2-70 (871)
47 KOG0720 Molecular chaperone (D 99.6 1.3E-15 2.8E-20 141.4 8.7 69 44-112 234-302 (490)
48 KOG0624 dsRNA-activated protei 99.6 2.7E-15 5.9E-20 135.8 7.2 68 41-108 390-461 (504)
49 PHA03102 Small T antigen; Revi 99.6 1.9E-15 4.1E-20 123.8 4.7 64 45-111 5-70 (153)
50 PRK01356 hscB co-chaperone Hsc 99.6 5.8E-15 1.3E-19 122.9 7.4 68 44-111 1-74 (166)
51 PRK05014 hscB co-chaperone Hsc 99.5 9.9E-15 2.1E-19 122.0 7.4 67 45-111 1-75 (171)
52 PRK03578 hscB co-chaperone Hsc 99.5 3.6E-14 7.8E-19 119.1 8.0 68 44-111 5-80 (176)
53 PRK00294 hscB co-chaperone Hsc 99.5 8.6E-14 1.9E-18 116.5 8.0 68 44-111 3-78 (173)
54 KOG0550 Molecular chaperone (D 99.4 5.1E-14 1.1E-18 129.8 3.1 94 16-109 341-439 (486)
55 KOG0714 Molecular chaperone (D 99.4 1.2E-13 2.6E-18 121.7 3.9 70 44-113 2-73 (306)
56 KOG0722 Molecular chaperone (D 99.4 1.3E-13 2.7E-18 119.9 3.6 65 45-109 33-97 (329)
57 PTZ00100 DnaJ chaperone protei 99.3 1.6E-12 3.4E-17 101.7 4.7 52 44-98 64-115 (116)
58 PRK09430 djlA Dna-J like membr 99.3 2E-12 4.3E-17 115.3 5.5 58 42-99 197-262 (267)
59 PRK01773 hscB co-chaperone Hsc 99.2 1.8E-11 4E-16 102.4 7.2 68 44-111 1-76 (173)
60 PHA02624 large T antigen; Prov 99.2 7.2E-12 1.6E-16 121.5 5.4 60 44-106 10-71 (647)
61 COG5269 ZUO1 Ribosome-associat 99.2 2.7E-12 5.8E-17 112.7 1.7 72 38-109 36-113 (379)
62 COG5407 SEC63 Preprotein trans 99.1 4.8E-11 1E-15 111.0 4.5 68 44-111 97-170 (610)
63 TIGR00714 hscB Fe-S protein as 99.1 2E-10 4.3E-15 94.8 7.0 55 57-111 3-63 (157)
64 KOG1150 Predicted molecular ch 99.1 2.9E-10 6.2E-15 96.0 6.8 66 43-108 51-118 (250)
65 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.6 1.7E-08 3.6E-13 71.5 2.2 58 169-229 1-59 (66)
66 KOG0568 Molecular chaperone (D 98.4 3.1E-07 6.6E-12 79.5 4.2 59 42-100 44-103 (342)
67 KOG0723 Molecular chaperone (D 98.4 6.2E-07 1.3E-11 68.6 5.0 51 47-100 58-108 (112)
68 KOG1789 Endocytosis protein RM 98.4 5E-07 1.1E-11 91.6 5.7 57 41-99 1277-1337(2235)
69 KOG3192 Mitochondrial J-type c 97.8 2.7E-05 5.8E-10 63.6 4.4 69 43-111 6-82 (168)
70 PLN03165 chaperone protein dna 96.6 0.0007 1.5E-08 52.7 0.7 48 166-223 41-88 (111)
71 COG1076 DjlA DnaJ-domain-conta 96.6 0.0013 2.8E-08 55.1 2.2 53 45-97 113-173 (174)
72 KOG0431 Auxilin-like protein a 96.5 0.0029 6.4E-08 60.6 4.3 45 52-96 395-447 (453)
73 COG1076 DjlA DnaJ-domain-conta 96.4 0.003 6.4E-08 52.9 3.6 65 46-110 2-74 (174)
74 PF03656 Pam16: Pam16; InterP 96.0 0.016 3.4E-07 46.3 5.3 54 46-102 59-112 (127)
75 COG0484 DnaJ DnaJ-class molecu 90.3 0.077 1.7E-06 49.6 -0.2 57 168-235 161-222 (371)
76 KOG0724 Zuotin and related mol 88.2 0.5 1.1E-05 43.3 3.5 53 57-109 4-61 (335)
77 PF00684 DnaJ_CXXCXGXG: DnaJ c 85.6 0.12 2.6E-06 36.2 -1.6 43 168-220 17-66 (66)
78 TIGR02642 phage_xxxx uncharact 85.0 0.52 1.1E-05 40.0 1.7 32 187-227 101-132 (186)
79 TIGR02642 phage_xxxx uncharact 84.6 0.72 1.6E-05 39.2 2.3 27 166-195 99-125 (186)
80 PRK14277 chaperone protein Dna 83.8 0.29 6.3E-06 46.0 -0.4 58 167-235 173-237 (386)
81 PTZ00037 DnaJ_C chaperone prot 83.8 0.28 6.1E-06 46.7 -0.5 59 168-235 168-233 (421)
82 PRK14278 chaperone protein Dna 83.3 0.33 7.3E-06 45.5 -0.2 58 167-235 157-221 (378)
83 TIGR02349 DnaJ_bact chaperone 82.8 0.33 7.2E-06 44.9 -0.4 57 168-235 162-225 (354)
84 PF11833 DUF3353: Protein of u 82.3 3.2 7E-05 35.4 5.5 41 54-101 1-41 (194)
85 PF13446 RPT: A repeated domai 82.2 2.2 4.8E-05 29.2 3.7 27 45-71 5-31 (62)
86 PRK14298 chaperone protein Dna 79.8 0.39 8.4E-06 45.1 -1.1 58 167-235 159-223 (377)
87 PRK14301 chaperone protein Dna 79.6 0.58 1.3E-05 43.8 -0.0 58 167-235 162-222 (373)
88 PRK14300 chaperone protein Dna 78.8 0.61 1.3E-05 43.6 -0.1 57 168-235 164-223 (372)
89 PRK14293 chaperone protein Dna 78.7 0.58 1.3E-05 43.8 -0.3 58 167-235 161-225 (374)
90 PRK14285 chaperone protein Dna 77.9 0.71 1.5E-05 43.1 0.0 58 167-235 164-224 (365)
91 PRK14296 chaperone protein Dna 77.8 0.58 1.3E-05 43.8 -0.6 58 167-235 167-231 (372)
92 PRK14280 chaperone protein Dna 77.2 0.55 1.2E-05 44.0 -0.9 58 167-235 161-225 (376)
93 PRK14289 chaperone protein Dna 76.4 0.59 1.3E-05 43.9 -1.0 49 167-226 172-227 (386)
94 PRK14294 chaperone protein Dna 76.3 0.86 1.9E-05 42.5 0.1 58 167-235 162-222 (366)
95 PRK14286 chaperone protein Dna 76.0 0.81 1.8E-05 42.8 -0.1 58 167-235 168-228 (372)
96 PRK14276 chaperone protein Dna 76.0 0.53 1.2E-05 44.2 -1.4 57 167-234 164-227 (380)
97 PRK14290 chaperone protein Dna 75.7 0.72 1.6E-05 43.0 -0.6 57 168-235 167-230 (365)
98 PRK14279 chaperone protein Dna 75.6 0.97 2.1E-05 42.6 0.2 58 167-235 191-251 (392)
99 PRK14292 chaperone protein Dna 74.9 0.84 1.8E-05 42.6 -0.4 57 167-234 158-221 (371)
100 PRK14281 chaperone protein Dna 74.7 0.86 1.9E-05 43.0 -0.3 58 167-235 180-244 (397)
101 PRK14297 chaperone protein Dna 74.4 0.95 2.1E-05 42.4 -0.1 48 167-225 166-220 (380)
102 COG5552 Uncharacterized conser 72.5 11 0.00025 27.2 5.0 46 45-90 3-48 (88)
103 PF14687 DUF4460: Domain of un 71.8 7.6 0.00016 30.2 4.4 45 56-100 5-54 (112)
104 PRK14295 chaperone protein Dna 71.4 1.2 2.7E-05 41.9 -0.1 58 167-235 184-244 (389)
105 PRK10767 chaperone protein Dna 71.3 1.3 2.8E-05 41.4 -0.1 56 168-234 161-219 (371)
106 PRK14284 chaperone protein Dna 70.7 1.1 2.3E-05 42.3 -0.7 59 166-235 175-236 (391)
107 PRK14283 chaperone protein Dna 70.3 1.2 2.7E-05 41.6 -0.4 57 167-234 164-227 (378)
108 PRK14288 chaperone protein Dna 69.4 1.2 2.5E-05 41.7 -0.8 58 167-235 157-217 (369)
109 TIGR00757 RNaseEG ribonuclease 68.9 2.9 6.3E-05 39.8 1.8 34 192-225 371-405 (414)
110 PRK14282 chaperone protein Dna 67.6 1.3 2.9E-05 41.3 -0.8 57 168-235 171-234 (369)
111 PRK14291 chaperone protein Dna 64.7 2.1 4.5E-05 40.2 -0.1 57 167-235 174-233 (382)
112 PRK11712 ribonuclease G; Provi 63.9 3.9 8.4E-05 39.8 1.6 43 192-234 383-426 (489)
113 PF10041 DUF2277: Uncharacteri 62.5 35 0.00077 24.8 5.9 43 46-88 4-46 (78)
114 KOG3442 Uncharacterized conser 62.0 16 0.00034 29.1 4.3 51 47-100 61-111 (132)
115 COG0178 UvrA Excinuclease ATPa 61.7 5.8 0.00013 41.0 2.4 32 186-219 731-762 (935)
116 PF07092 DUF1356: Protein of u 61.1 4.6 0.0001 35.6 1.4 15 208-222 36-50 (238)
117 PRK14287 chaperone protein Dna 56.6 2.3 4.9E-05 39.8 -1.3 47 167-224 156-209 (371)
118 PF07709 SRR: Seven Residue Re 50.4 14 0.00031 17.8 1.6 13 86-98 2-14 (14)
119 COG1107 Archaea-specific RecJ- 43.7 7.4 0.00016 38.6 -0.1 12 212-223 70-81 (715)
120 PF08792 A2L_zn_ribbon: A2L zi 40.3 21 0.00045 21.6 1.5 16 211-226 4-19 (33)
121 COG1530 CafA Ribonucleases G a 36.7 26 0.00057 34.1 2.5 62 169-234 357-419 (487)
122 COG1107 Archaea-specific RecJ- 35.1 9 0.00019 38.1 -1.0 65 162-230 48-116 (715)
123 TIGR00630 uvra excinuclease AB 34.9 28 0.0006 36.7 2.4 31 188-220 739-769 (924)
124 PF12434 Malate_DH: Malate deh 34.6 45 0.00098 19.4 2.2 17 59-75 10-26 (28)
125 cd03031 GRX_GRX_like Glutaredo 32.0 37 0.00079 27.6 2.2 34 187-222 112-145 (147)
126 KOG0906 Phosphatidylinositol 3 29.6 1.4E+02 0.0031 30.4 6.1 83 7-98 595-693 (843)
127 cd00084 HMG-box High Mobility 29.5 1.6E+02 0.0035 19.1 5.4 43 63-109 12-54 (66)
128 PRK00635 excinuclease ABC subu 28.6 40 0.00088 38.1 2.5 30 188-219 1610-1639(1809)
129 KOG2824 Glutaredoxin-related p 27.7 46 0.001 30.0 2.3 35 186-223 241-275 (281)
130 cd01388 SOX-TCF_HMG-box SOX-TC 27.7 2.1E+02 0.0045 19.7 5.9 42 64-109 14-55 (72)
131 PRK00349 uvrA excinuclease ABC 27.6 45 0.00097 35.3 2.5 31 188-220 741-771 (943)
132 cd01390 HMGB-UBF_HMG-box HMGB- 25.9 2E+02 0.0043 18.9 5.5 40 66-109 15-54 (66)
133 cd01389 MATA_HMG-box MATA_HMG- 23.9 2.6E+02 0.0055 19.4 5.5 43 63-109 13-55 (77)
134 PF00505 HMG_box: HMG (high mo 23.8 2.3E+02 0.0049 18.8 5.7 43 63-109 12-54 (69)
135 KOG0527 HMG-box transcription 21.2 1.5E+02 0.0032 27.6 4.3 41 64-108 75-115 (331)
136 PF02216 B: B domain; InterPr 21.1 1.7E+02 0.0037 19.7 3.5 30 46-78 12-41 (54)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=297.19 Aligned_cols=182 Identities=23% Similarity=0.235 Sum_probs=130.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccc-cCCC
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIE-CNRI 121 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~-~~~~ 121 (245)
.+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+|||||++|++||+++...+... .+..
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~ 82 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGF 82 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCC
Confidence 479999999999999999999999999999999999 89999999999999999999999999999998877511 1111
Q ss_pred CCCCCCC-CCCCCCCCccccCC--CccCc-----h------hHHHHHHHHHHHHHHHHHHH-HHHHHhccccccccCCCC
Q 042055 122 PYTSCKS-PVNSRASKYKAWNP--AAWSR-----S------YKILRNLRDIKERFKEEAKV-IENCLSAAASRKESLLVN 186 (245)
Q Consensus 122 ~~~~~~~-~~~~~~~~~~~w~~--~~~~r-----~------~~~~~~l~~~~~~~~~e~~v-ce~C~g~g~k~~~~~~~~ 186 (245)
.+...+. ....++.+|.+... ..+++ + ++|.++.......+...+.+ |+.|.|+|+++++.+.+|
T Consensus 83 g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC 162 (371)
T COG0484 83 GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTC 162 (371)
T ss_pred CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcC
Confidence 1111110 11111222211100 00111 1 23444444445777777888 999999999999999877
Q ss_pred CCCCcccceeEEeeecccccccccccCCCCcccceeecCCCc
Q 042055 187 PSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQS 228 (245)
Q Consensus 187 ~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~ 228 (245)
++ |+|++.+.+.... +..+++++|+.|+|+|++|++|+.
T Consensus 163 ~t--C~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~ 201 (371)
T COG0484 163 PT--CNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCG 201 (371)
T ss_pred CC--CCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCC
Confidence 77 8888544333322 555567899999999999987753
No 2
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-32 Score=248.60 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=136.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCC
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPY 123 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~ 123 (245)
+..||+||||+++||.+|||+|||+||++||||||++ +.++|++|++||+|||||++|..||.++.+++.....+..+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~ 80 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF 80 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence 4689999999999999999999999999999999965 88999999999999999999999999998877433222221
Q ss_pred CCCCCCCCCCCCCcc--ccCCCccCc--hh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCCCCCCcc
Q 042055 124 TSCKSPVNSRASKYK--AWNPAAWSR--SY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVNPSSNLF 192 (245)
Q Consensus 124 ~~~~~~~~~~~~~~~--~w~~~~~~r--~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~~~~~C~ 192 (245)
.. ++.+|. +.....+.| ++ .....|+++| ..+...+++ |..|.|.|.+.++.+ +|..|.
T Consensus 81 ~~-------f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~---~C~~C~ 150 (337)
T KOG0712|consen 81 GG-------FSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP---KCTTCR 150 (337)
T ss_pred cc-------HHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC---CCCCCC
Confidence 11 122222 111111222 11 2334677776 457777777 999999988888766 344475
Q ss_pred cc--eeEEeeecccccccccccCCCCcccceeecCCCcccc
Q 042055 193 QS--RHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWY 231 (245)
Q Consensus 193 G~--~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~ 231 (245)
|+ +...++++|+|.++.++.|..|+|+|.+|+..+.|-.
T Consensus 151 GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~ 191 (337)
T KOG0712|consen 151 GSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKT 191 (337)
T ss_pred CCCceeEEEeccccccccceeEeccCCCccccccccccCcc
Confidence 55 8888999999999999999999999999999999973
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.3e-31 Score=248.32 Aligned_cols=180 Identities=18% Similarity=0.229 Sum_probs=123.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccC-CCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECN-RIPY 123 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~-~~~~ 123 (245)
.|||+||||+++|+.++||+|||+||++||||+|+++.|+++|++|++||+|||||++|+.||.++..++....+ ...+
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~ 83 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNF 83 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCC
Confidence 699999999999999999999999999999999998889999999999999999999999999988654431100 0001
Q ss_pred CCCC----C---CCC-CCCCCcccc-CCC----c---cCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhcccccc
Q 042055 124 TSCK----S---PVN-SRASKYKAW-NPA----A---WSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRK 180 (245)
Q Consensus 124 ~~~~----~---~~~-~~~~~~~~w-~~~----~---~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~ 180 (245)
.... . .++ .....|..+ ... . +..++ .+...|++.+ ..+..++.+ |..|.|+|.+..
T Consensus 84 ~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 163 (372)
T PRK14296 84 GDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESN 163 (372)
T ss_pred CccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCC
Confidence 0000 0 000 001112111 100 0 11122 2333555554 445556666 999999998888
Q ss_pred ccCCCCCCCCccccee--EEeeecccccccccccCCCCcccceeecCCC
Q 042055 181 ESLLVNPSSNLFQSRH--RTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 181 ~~~~~~~~~~C~G~~~--~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
..+.+|+. |+|.+. +.++.+| |.++.++.|+.|+|+|++++++.
T Consensus 164 ~~~~~C~~--C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~~~C 209 (372)
T PRK14296 164 SDIHICNN--CHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIKNKC 209 (372)
T ss_pred CCCccCCC--CCCCceEEEEEeccc-eEEEEEecCCCcCCcceeecccc
Confidence 77765555 777744 3444555 44456679999999999998763
No 4
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.96 E-value=1.9e-30 Score=243.54 Aligned_cols=174 Identities=17% Similarity=0.173 Sum_probs=121.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCC
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPY 123 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~ 123 (245)
..|||+||||+++||.++||+|||+||++||||+|++ .++|++|++||+||+||.+|+.||.++..++....+
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~---- 99 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQ---- 99 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCC----
Confidence 5799999999999999999999999999999999863 589999999999999999999999987654431100
Q ss_pred CCCCCCCCCCCCCccccC---CCccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCCCCCCccc
Q 042055 124 TSCKSPVNSRASKYKAWN---PAAWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVNPSSNLFQ 193 (245)
Q Consensus 124 ~~~~~~~~~~~~~~~~w~---~~~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~~~~~C~G 193 (245)
...+......+|.+.. ...+..++ .+...|++.+ ..+...+.+ |..|.|+|.+.. .+.+ |..|.|
T Consensus 100 --~~d~~d~f~~~Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~--C~~C~G 174 (421)
T PTZ00037 100 --PADASDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AFVD--CKLCNG 174 (421)
T ss_pred --CcchhhhHHHhhccccccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CCcc--CCCCCC
Confidence 0000000111111100 00111222 2333555554 556666777 999999987554 3444 444777
Q ss_pred ce--eEEeeecccccccccccCCCCcccceeecCCCccc
Q 042055 194 SR--HRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFW 230 (245)
Q Consensus 194 ~~--~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~ 230 (245)
.+ .+.++.+| |.++.+++|+.|+|+|++|+..+.|=
T Consensus 175 ~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~ 212 (421)
T PTZ00037 175 QGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCK 212 (421)
T ss_pred CCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCC
Confidence 64 45556666 77777889999999999998777774
No 5
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.2e-30 Score=241.95 Aligned_cols=179 Identities=18% Similarity=0.141 Sum_probs=122.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPYT 124 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~ 124 (245)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++..++....+...+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~ 83 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAG 83 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCc
Confidence 59999999999999999999999999999999998888999999999999999999999999998865442111000000
Q ss_pred CCCCCCCCCCCCccccCCC------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCCCCCCc
Q 042055 125 SCKSPVNSRASKYKAWNPA------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVNPSSNL 191 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~w~~~------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~~~~~C 191 (245)
...........+|.+.... .+..++ .+...|++.+ ..+...+.+ |..|.|+|++....+.+|+. |
T Consensus 84 ~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~--C 161 (371)
T PRK14287 84 DFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSH--C 161 (371)
T ss_pred cccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCC--C
Confidence 0000000011111110000 011121 2222455553 455556666 99999999887776665555 7
Q ss_pred ccc--eeEEeeecccccccccccCCCCcccceeecCC
Q 042055 192 FQS--RHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 192 ~G~--~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
.|. ..+.++..|||.++ +.+|+.|+|+|++++++
T Consensus 162 ~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~~~ 197 (371)
T PRK14287 162 GGSGQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIKQK 197 (371)
T ss_pred CCEEEEEEEEecCCceEEE-EEeCCCCCCCCcccccc
Confidence 777 44445567778765 56999999999999877
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.6e-30 Score=241.40 Aligned_cols=180 Identities=24% Similarity=0.289 Sum_probs=122.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCC-CCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNR-IPY 123 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~-~~~ 123 (245)
.|||+||||+++|+.++||+|||+||++||||+|+++.++++|++|++||+||+||.+|+.||+++..++....+. ..+
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~ 84 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIF 84 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccccc
Confidence 5999999999999999999999999999999999888899999999999999999999999999876544311100 000
Q ss_pred CCCC--CCCCCCCCCccccCC-----CccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCCCCC
Q 042055 124 TSCK--SPVNSRASKYKAWNP-----AAWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVNPSS 189 (245)
Q Consensus 124 ~~~~--~~~~~~~~~~~~w~~-----~~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~~~~ 189 (245)
.... ........+|.+... ..+..++ .+...|++.+ ..+..++.+ |..|.|+|++.+..+.+|+.
T Consensus 85 ~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~- 163 (377)
T PRK14298 85 RGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPT- 163 (377)
T ss_pred ccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCC-
Confidence 0000 000001111111000 0011122 2223555554 455556666 99999999888877665555
Q ss_pred CcccceeEE-eeecccccccccccCCCCcccceeecCC
Q 042055 190 NLFQSRHRT-QKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 190 ~C~G~~~~~-~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
|.|.+.+. .+..|++.++.++.|+.|+|+|++|.++
T Consensus 164 -C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~ 200 (377)
T PRK14298 164 -CGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESP 200 (377)
T ss_pred -CCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCC
Confidence 87774333 3346766667788999999999999776
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=2.3e-30 Score=239.82 Aligned_cols=177 Identities=24% Similarity=0.314 Sum_probs=118.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCC-CC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNR-IP 122 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~-~~ 122 (245)
.|||+||||+++||.++||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+++..++....+. ..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~~ 82 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQSD 82 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCccc
Confidence 69999999999999999999999999999999998 67799999999999999999999999999886544311000 00
Q ss_pred CCCC-CCCCCCCCCCccccC-CC-----ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCCCC
Q 042055 123 YTSC-KSPVNSRASKYKAWN-PA-----AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVNPS 188 (245)
Q Consensus 123 ~~~~-~~~~~~~~~~~~~w~-~~-----~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~~~ 188 (245)
+... ......++.+|..-. .. .+..++ .....|++++ ..+...+.+ |..|.|+|++.. .+. +|
T Consensus 83 ~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~--~C 159 (369)
T PRK14288 83 FSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-ALE--TC 159 (369)
T ss_pred cccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-CCc--CC
Confidence 0000 000000000111000 00 011122 2334666664 344445565 999999988765 344 55
Q ss_pred CCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 189 SNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 189 ~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
..|.|.+.+..+. +|.+ +++.|+.|+|+|++|+++.
T Consensus 160 ~~C~G~G~~~~~~--g~~~-~~~~C~~C~G~G~~~~~~C 195 (369)
T PRK14288 160 KQCNGQGQVFMRQ--GFMS-FAQTCGACQGKGKIIKTPC 195 (369)
T ss_pred CCCCCCcEEEEEe--ceEE-EEEecCCCCCCceEccccC
Confidence 5598887665554 4443 4459999999999998763
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=6e-30 Score=237.29 Aligned_cols=177 Identities=22% Similarity=0.245 Sum_probs=121.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCC-
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIP- 122 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~- 122 (245)
.|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+++..++....+...
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQ 83 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCC
Confidence 69999999999999999999999999999999998 5778999999999999999999999999988765432111000
Q ss_pred --CCCCC----CCCCCCCCCccccC-C----C-----ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccc
Q 042055 123 --YTSCK----SPVNSRASKYKAWN-P----A-----AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASR 179 (245)
Q Consensus 123 --~~~~~----~~~~~~~~~~~~w~-~----~-----~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~ 179 (245)
+.... .+......+|.+.. . . .+..++ .+...|++++ ..+...+.+ |..|.|+|++.
T Consensus 84 ~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~ 163 (372)
T PRK14286 84 GAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASK 163 (372)
T ss_pred CCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCC
Confidence 00000 00000011111100 0 0 011122 2223555554 556667777 99999999887
Q ss_pred cccCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCC
Q 042055 180 KESLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 180 ~~~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
...+. +|..|.|.+.+.... +|++ +++.|+.|+|+|++|+++
T Consensus 164 ~~~~~--~C~~C~G~G~v~~~~--G~~~-~~~~C~~C~G~G~~~~~~ 205 (372)
T PRK14286 164 GSSPT--TCPDCGGSGQIRRTQ--GFFS-VATTCPTCRGKGTVISNP 205 (372)
T ss_pred CCCCc--cCCCCcCeEEEEEEe--ceEE-EEEeCCCCCceeeEeccc
Confidence 76665 455599987666654 4554 566999999999999876
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=3.6e-30 Score=239.39 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=124.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCC--CC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNR--IP 122 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~--~~ 122 (245)
.|||+||||+++|+.++||+|||+||++||||+|+++.|+++|++|++||+||+||.+|+.||+++..++....+. ..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~ 83 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGG 83 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCC
Confidence 6999999999999999999999999999999999988899999999999999999999999999887654321100 00
Q ss_pred CCCCCC-CCC-CCCCCccccCC-C---------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccC
Q 042055 123 YTSCKS-PVN-SRASKYKAWNP-A---------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESL 183 (245)
Q Consensus 123 ~~~~~~-~~~-~~~~~~~~w~~-~---------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~ 183 (245)
+..... ..+ .....|..+.. . .+..++ .+...|++++ ..+...+.+ |..|.|+|.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~ 163 (380)
T PRK14276 84 FGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSP 163 (380)
T ss_pred CCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCC
Confidence 000000 000 00011111110 0 011121 2233556664 445556666 999999998887766
Q ss_pred CCCCCCCcccce--eEEeeecccccccccccCCCCcccceeecCCC
Q 042055 184 LVNPSSNLFQSR--HRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 184 ~~~~~~~C~G~~--~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
.+|+. |.|.+ .+.++..|+|+++ +++|+.|+|+|++|+++.
T Consensus 164 ~~C~~--C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~~~C 206 (380)
T PRK14276 164 VTCGK--CHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIKEPC 206 (380)
T ss_pred ccCCC--CCCeeEEEEEEecCCceEEE-EEECCCCCCCCccccCCC
Confidence 65555 77774 4445567778775 669999999999998763
No 10
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=7e-30 Score=237.19 Aligned_cols=180 Identities=19% Similarity=0.143 Sum_probs=123.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPYT 124 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~ 124 (245)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||.++..++....+...+.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~ 83 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFG 83 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCC
Confidence 59999999999999999999999999999999999888999999999999999999999999998765443211100000
Q ss_pred CCCCC-CCCCCCCccccCC-C---------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCC
Q 042055 125 SCKSP-VNSRASKYKAWNP-A---------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVN 186 (245)
Q Consensus 125 ~~~~~-~~~~~~~~~~w~~-~---------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~ 186 (245)
..... ++.....|..+.. . .+..++ .+...|++++ ..+..++.+ |..|.|+|.+.+..+.+|
T Consensus 84 ~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C 163 (376)
T PRK14280 84 GGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETC 163 (376)
T ss_pred CCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccC
Confidence 00000 0000111211110 0 011122 2233556664 455566777 999999998877766655
Q ss_pred CCCCcccc--eeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 187 PSSNLFQS--RHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 187 ~~~~C~G~--~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
+. |.|. ..+.++..++|.+ ++++|+.|+|+|.+|++++
T Consensus 164 ~~--C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~~~C 203 (376)
T PRK14280 164 SH--CGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIKEKC 203 (376)
T ss_pred CC--CCCEEEEEEEeecCCceEE-EEEEcCCCCCCCceecCCC
Confidence 55 7666 4444456677776 4669999999999998774
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=4.4e-30 Score=238.67 Aligned_cols=179 Identities=20% Similarity=0.184 Sum_probs=120.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPYT 124 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~ 124 (245)
.|||+||||+++|+.++||+|||+||++||||+|+++.|+++|++|++||+||+||.+|+.||.++............+.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~ 82 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG 82 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence 59999999999999999999999999999999999888999999999999999999999999998754211000000010
Q ss_pred -CCCCCCCCCCCCccccCCC-------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCCCCC
Q 042055 125 -SCKSPVNSRASKYKAWNPA-------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVNPSS 189 (245)
Q Consensus 125 -~~~~~~~~~~~~~~~w~~~-------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~~~~ 189 (245)
...........+|.+.... .+..++ .+...|++++ ..+..++.+ |..|.|+|.+.+..+.+|+.
T Consensus 83 ~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~- 161 (378)
T PRK14278 83 GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDT- 161 (378)
T ss_pred cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCC-
Confidence 0000000011111110000 011122 2233556664 445556666 99999999888877665555
Q ss_pred Cccccee--EEeeecccccccccccCCCCcccceeecCC
Q 042055 190 NLFQSRH--RTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 190 ~C~G~~~--~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
|.|.+. +.++..+++.++ ++.|+.|+|+|++|+++
T Consensus 162 -C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~~~ 198 (378)
T PRK14278 162 -CGGRGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIPDP 198 (378)
T ss_pred -ccCceEEEEEEeccceeEEE-EEECCCCCccceeeCCC
Confidence 877743 344456666664 45999999999999876
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.4e-29 Score=236.27 Aligned_cols=178 Identities=23% Similarity=0.227 Sum_probs=119.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhh----hcccc-
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKK----FCIEC- 118 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~----~~~~~- 118 (245)
+|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||+|||||++|+.||+++... +....
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~ 88 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRF 88 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccc
Confidence 69999999999999999999999999999999998 5678999999999999999999999999987531 11000
Q ss_pred -CCCCCCCCC--------C----CC----C---CCCCCcccc-CCCc---------cCchh--HHHHHHHHHH----HHH
Q 042055 119 -NRIPYTSCK--------S----PV----N---SRASKYKAW-NPAA---------WSRSY--KILRNLRDIK----ERF 162 (245)
Q Consensus 119 -~~~~~~~~~--------~----~~----~---~~~~~~~~w-~~~~---------~~r~~--~~~~~l~~~~----~~~ 162 (245)
+...+.... . .. . .....|..+ .... +..++ .+...|++++ ..+
T Consensus 89 ~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v 168 (392)
T PRK14279 89 DGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPL 168 (392)
T ss_pred cCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEE
Confidence 000000000 0 00 0 000111111 1000 11122 2223555664 456
Q ss_pred HHHHHH-HHHHHhccccccccCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 163 KEEAKV-IENCLSAAASRKESLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 163 ~~e~~v-ce~C~g~g~k~~~~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
..++.+ |..|.|+|.+....+.+|+ .|.|.+.+....++ . +++++|+.|+|+|++|++++
T Consensus 169 ~~~~~~~C~~C~G~G~~~~~~~~~C~--~C~G~G~~~~~~g~--~-~~~~~C~~C~G~G~~i~~~C 229 (392)
T PRK14279 169 RLTSPAPCTTCHGSGARPGTSPKVCP--TCNGSGVISRNQGA--F-GFSEPCTDCRGTGSIIEDPC 229 (392)
T ss_pred eeeccccCCCCccccccCCCCCCCCC--CCcceEEEEEEecc--e-EEEEecCCCCceeEEeCCcC
Confidence 666777 9999999988877665444 49999776666533 2 34579999999999998763
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.3e-29 Score=234.89 Aligned_cols=180 Identities=19% Similarity=0.204 Sum_probs=122.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCC--
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH--RKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNR-- 120 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~-- 120 (245)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||.++..++......
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~ 83 (369)
T PRK14282 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETE 83 (369)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCC
Confidence 699999999999999999999999999999999973 5688999999999999999999999999876543211000
Q ss_pred --CCC-CC-CCCCCC-CCCCCcccc-CC--C--------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccc
Q 042055 121 --IPY-TS-CKSPVN-SRASKYKAW-NP--A--------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAA 177 (245)
Q Consensus 121 --~~~-~~-~~~~~~-~~~~~~~~w-~~--~--------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~ 177 (245)
..+ .. ...... .....|..+ .. . ....++ .....|++++ ..+...+.+ |..|.|+|+
T Consensus 84 ~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~ 163 (369)
T PRK14282 84 SGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGV 163 (369)
T ss_pred CCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCC
Confidence 000 00 000000 000111111 10 0 011121 2223555554 455666766 999999998
Q ss_pred cccccCCCCCCCCcccc--eeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 178 SRKESLLVNPSSNLFQS--RHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 178 k~~~~~~~~~~~~C~G~--~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
+....+.+|+. |.|. ....++..|||.++ ++.|+.|+|+|++|+++.
T Consensus 164 ~~~~~~~~C~~--C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~~~C 212 (369)
T PRK14282 164 EPGSGYVTCPK--CHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPGEYC 212 (369)
T ss_pred CCCCCCcCCCC--CCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCCCCC
Confidence 88776665555 7666 44555678888765 569999999999998763
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.5e-29 Score=234.17 Aligned_cols=178 Identities=22% Similarity=0.267 Sum_probs=122.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPY 123 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~ 123 (245)
.|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||.++..++....+...+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~ 82 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGF 82 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCcccc
Confidence 59999999999999999999999999999999998 56788999999999999999999999999877654321100000
Q ss_pred CCC-CCCCC---CCCCCccccCC----C------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhcccccccc
Q 042055 124 TSC-KSPVN---SRASKYKAWNP----A------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKES 182 (245)
Q Consensus 124 ~~~-~~~~~---~~~~~~~~w~~----~------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~ 182 (245)
... ...+. .....|..|.. . .+..++ .+...|++.+ ..+..++.+ |..|.|+|.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 162 (365)
T PRK14285 83 SGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTS 162 (365)
T ss_pred CCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCC
Confidence 000 00000 00011111110 0 011122 2233555554 455566676 99999999887776
Q ss_pred CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 183 LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 183 ~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
+.+ |..|.|.+.+.. .+||+ +++..|+.|+|+|.+|+++.
T Consensus 163 ~~~--C~~C~G~G~~~~--~~G~~-~~~~~C~~C~G~G~~~~~~C 202 (365)
T PRK14285 163 PSI--CNMCNGSGRVMQ--GGGFF-RVTTTCPKCYGNGKIISNPC 202 (365)
T ss_pred Ccc--CCCccCceeEEe--cCcee-EEeeecCCCCCcccccCCCC
Confidence 654 555999876554 56777 45789999999999998763
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2.4e-29 Score=234.28 Aligned_cols=179 Identities=22% Similarity=0.247 Sum_probs=122.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccc-cCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIE-CNRIP 122 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~-~~~~~ 122 (245)
.|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||.++..++... .+..+
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 84 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGG 84 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCC
Confidence 69999999999999999999999999999999998 56789999999999999999999999999876554311 00000
Q ss_pred C--CCC--CCCCC---C----CCCCcccc-CCCc--------cCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhc
Q 042055 123 Y--TSC--KSPVN---S----RASKYKAW-NPAA--------WSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSA 175 (245)
Q Consensus 123 ~--~~~--~~~~~---~----~~~~~~~w-~~~~--------~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~ 175 (245)
. ... ..... . ...+|..+ .... +..++ .+...|++++ .++..++.+ |..|.|+
T Consensus 85 ~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~ 164 (386)
T PRK14277 85 FGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGS 164 (386)
T ss_pred cCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCC
Confidence 0 000 00000 0 01112111 1000 11122 2333666664 445556666 9999999
Q ss_pred cccccccCCCCCCCCcccc--eeEEeeecccccccccccCCCCcccceeecCC
Q 042055 176 AASRKESLLVNPSSNLFQS--RHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 176 g~k~~~~~~~~~~~~C~G~--~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
|.+....+.+|+. |.|. ..+.++..|||.+++ +.|+.|+|+|.+|+++
T Consensus 165 G~~~~~~~~~C~~--C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~~~ 214 (386)
T PRK14277 165 GAKPGSKPVTCPV--CHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIITDP 214 (386)
T ss_pred CcCCCCCCccCCC--CCCEEEEEEEEeccCceEEEE-EECCCCCcceeeccCC
Confidence 9887766665555 7666 444556778887764 6999999999999766
No 16
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=8e-29 Score=229.78 Aligned_cols=177 Identities=23% Similarity=0.279 Sum_probs=121.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPY 123 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~ 123 (245)
.|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||.++..++....+...+
T Consensus 4 ~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~ 83 (371)
T PRK10767 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGF 83 (371)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCC
Confidence 69999999999999999999999999999999997 56788999999999999999999999999876554311110001
Q ss_pred CCCCCCCCCCCCCcccc-CC---C-----ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCCC
Q 042055 124 TSCKSPVNSRASKYKAW-NP---A-----AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVNP 187 (245)
Q Consensus 124 ~~~~~~~~~~~~~~~~w-~~---~-----~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~~ 187 (245)
.............|..+ .. . .+..++ .....|++.+ ..+...+.+ |..|.|+|.+.+.....
T Consensus 84 ~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~-- 161 (371)
T PRK10767 84 GGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKT-- 161 (371)
T ss_pred CCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCcc--
Confidence 00000000011112111 10 0 011122 2223555664 556666777 99999999887776654
Q ss_pred CCCcccceeEEeeecccccccccccCCCCcccceeecCC
Q 042055 188 SSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 188 ~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
|..|.|.+.+.... ||.+ ++.+|+.|+|+|++++++
T Consensus 162 C~~C~G~G~~~~~~--g~~~-~~~~C~~C~G~G~~~~~~ 197 (371)
T PRK10767 162 CPTCHGAGQVRMQQ--GFFT-VQQTCPTCHGRGKIIKDP 197 (371)
T ss_pred CCCCCCeeEEEEee--ceEE-EEEeCCCCCCceeECCCC
Confidence 44598886665554 4554 556999999999998766
No 17
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.3e-28 Score=228.97 Aligned_cols=180 Identities=21% Similarity=0.219 Sum_probs=121.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCC
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPY 123 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~ 123 (245)
..|||+||||+++|+.+|||+|||+||++||||+|+++.|+++|++|++||++|+||.+|+.||.++..++........+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~~ 83 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDIF 83 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccccc
Confidence 36999999999999999999999999999999999888899999999999999999999999999876544211000000
Q ss_pred CCCC-C---CCC--CCCCCcccc--CCC-----ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccC
Q 042055 124 TSCK-S---PVN--SRASKYKAW--NPA-----AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESL 183 (245)
Q Consensus 124 ~~~~-~---~~~--~~~~~~~~w--~~~-----~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~ 183 (245)
.... . ... ..+..|..| +.. .+..++ .+...|++++ ..+...+.+ |..|.|+|.+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 163 (378)
T PRK14283 84 NNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEV 163 (378)
T ss_pred cccCccccccccccchhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCC
Confidence 0000 0 000 001111111 100 011222 2333555664 445556666 999999988776655
Q ss_pred CCCCCCCccccee--EEeeecccccccccccCCCCcccceeecCC
Q 042055 184 LVNPSSNLFQSRH--RTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 184 ~~~~~~~C~G~~~--~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
..|+. |.|.+. ..++..+++.++ +..|+.|+|+|.++.++
T Consensus 164 ~~C~~--C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~~~ 205 (378)
T PRK14283 164 KTCPT--CGGTGQVKQVRNTILGQMMN-VTTCPDCQGEGKIVEKP 205 (378)
T ss_pred ccCCC--cCCccEEEEEEeccCceEEE-EEECCCCCccceecCCC
Confidence 54444 877744 445566777654 46999999999998766
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=4.9e-29 Score=231.26 Aligned_cols=178 Identities=22% Similarity=0.262 Sum_probs=120.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPY 123 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~ 123 (245)
.|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||.++..++....+...+
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~ 83 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGF 83 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCc
Confidence 69999999999999999999999999999999998 46788999999999999999999999999887654311000001
Q ss_pred CCCCCCCCCCCCCccc-cC--CC--------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCC
Q 042055 124 TSCKSPVNSRASKYKA-WN--PA--------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLV 185 (245)
Q Consensus 124 ~~~~~~~~~~~~~~~~-w~--~~--------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~ 185 (245)
......-......|.. +. .. ....++ .+...|++.+ ..+..++.+ |..|.|+|.+....+.+
T Consensus 84 ~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~ 163 (373)
T PRK14301 84 SSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPET 163 (373)
T ss_pred ccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcc
Confidence 0000000000000110 00 00 011122 2233555554 445556666 99999999887776654
Q ss_pred CCCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 186 NPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 186 ~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
|+ .|.|.+.+..+. +|.+ +++.|+.|+|+|++|+++.
T Consensus 164 C~--~C~G~G~v~~~~--G~~~-~~~~C~~C~G~G~~~~~~C 200 (373)
T PRK14301 164 CR--HCGGSGQVRQSQ--GFFQ-IAVPCPVCRGEGRVITHPC 200 (373)
T ss_pred cC--CccCeeEEEEEe--eeEE-EEEeCCCCCceeeecCCCC
Confidence 44 499987666654 4543 4779999999999998663
No 19
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.9e-28 Score=228.44 Aligned_cols=178 Identities=24% Similarity=0.244 Sum_probs=120.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHH----HhhhhhccccC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNL----ERWKKFCIECN 119 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~----~~~~~~~~~~~ 119 (245)
.|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+ ++..++....+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~ 88 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPG 88 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCC
Confidence 59999999999999999999999999999999998 56789999999999999999999999998 65544421100
Q ss_pred -C--CCCC--CCCCCC----------CC--CCCCcccc-CCC---c---cCchh--HHHHHHHHHH----HHHHHHHHH-
Q 042055 120 -R--IPYT--SCKSPV----------NS--RASKYKAW-NPA---A---WSRSY--KILRNLRDIK----ERFKEEAKV- 168 (245)
Q Consensus 120 -~--~~~~--~~~~~~----------~~--~~~~~~~w-~~~---~---~~r~~--~~~~~l~~~~----~~~~~e~~v- 168 (245)
. ..+. ...... .. ....|..+ ... . +..++ .+...|++++ ..+..++.+
T Consensus 89 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~ 168 (389)
T PRK14295 89 GGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAP 168 (389)
T ss_pred CCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecccc
Confidence 0 0000 000000 00 00111111 100 0 11122 2223556664 555666777
Q ss_pred HHHHHhccccccccCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 169 IENCLSAAASRKESLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 169 ce~C~g~g~k~~~~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
|..|.|+|.+.+..+.+|+. |.|.+.+....+ +| + +++.|+.|+|+|++|++++
T Consensus 169 C~~C~G~G~~~~~~~~~C~~--C~G~G~~~~~~g-~~-~-~~~~C~~C~G~G~~~~~~C 222 (389)
T PRK14295 169 CPACSGTGAKNGTTPRVCPT--CSGTGQVSRNSG-GF-S-LSEPCPDCKGRGLIADDPC 222 (389)
T ss_pred CCCCcccccCCCCCCcCCCC--CCCEeEEEEEec-ce-E-EEEecCCCcceeEEeccCC
Confidence 99999999888776665554 999977776653 34 2 4569999999999998763
No 20
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.95 E-value=1.1e-28 Score=227.48 Aligned_cols=178 Identities=22% Similarity=0.263 Sum_probs=122.4
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccC--CCCC
Q 042055 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECN--RIPY 123 (245)
Q Consensus 46 d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~--~~~~ 123 (245)
|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||++|+||.+|+.||.++...+..... ...+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999999999999999999999999999987788999999999999999999999999987655432111 0001
Q ss_pred CCCCCCCC-CCCCCccccCC----------C--ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccC
Q 042055 124 TSCKSPVN-SRASKYKAWNP----------A--AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESL 183 (245)
Q Consensus 124 ~~~~~~~~-~~~~~~~~w~~----------~--~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~ 183 (245)
.......+ .....|..|.. . ....++ .+...|++++ .++..++.+ |..|.|+|.......
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 160 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDP 160 (354)
T ss_pred CCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCC
Confidence 10000000 00011111100 0 011122 2233566664 455566667 999999998777665
Q ss_pred CCCCCCCcccce--eEEeeecccccccccccCCCCcccceeecCC
Q 042055 184 LVNPSSNLFQSR--HRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 184 ~~~~~~~C~G~~--~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
. +|..|.|.+ ...++.+|||+++ +..|+.|+|+|++|+++
T Consensus 161 ~--~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~~~ 202 (354)
T TIGR02349 161 K--TCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIKEP 202 (354)
T ss_pred c--cCCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecCCC
Confidence 5 444587774 4445577888876 56999999999999776
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.9e-28 Score=228.63 Aligned_cols=178 Identities=24% Similarity=0.251 Sum_probs=120.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhcccc---CC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIEC---NR 120 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~---~~ 120 (245)
+|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||+++..++.... ..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 49999999999999999999999999999999998 567899999999999999999999999998765432110 00
Q ss_pred CCCCCC--------CCCC--CC-CCCCcccc-CC-------C------ccCchh--HHHHHHHHHH----HHHHHHHHH-
Q 042055 121 IPYTSC--------KSPV--NS-RASKYKAW-NP-------A------AWSRSY--KILRNLRDIK----ERFKEEAKV- 168 (245)
Q Consensus 121 ~~~~~~--------~~~~--~~-~~~~~~~w-~~-------~------~~~r~~--~~~~~l~~~~----~~~~~e~~v- 168 (245)
..+... ...+ +. ....|..+ .. . .+..++ .+...|++.+ ..+..++.+
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 011000 0000 00 00111111 00 0 011111 2223455554 455556666
Q ss_pred HHHHHhccccccccCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 169 IENCLSAAASRKESLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 169 ce~C~g~g~k~~~~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
|..|.|+|++.+..+.+|+. |.|.+.+..+. +|.+ +++.|+.|+|+|++|++|.
T Consensus 161 C~~C~G~G~~~~~~~~~C~~--C~G~G~v~~~~--G~~~-~~~~C~~C~G~G~~~~~~C 214 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDR--CKGSGQVVQSR--GFFS-MASTCPECGGEGRVITDPC 214 (391)
T ss_pred CCCCcccccCCCCCCeecCc--cCCeeEEEEEe--ceEE-EEEECCCCCCCCcccCCcC
Confidence 99999999888776664554 99987766665 4444 5569999999999998773
No 22
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=9e-29 Score=231.22 Aligned_cols=179 Identities=22% Similarity=0.251 Sum_probs=119.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhcccc---CC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIEC---NR 120 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~---~~ 120 (245)
.|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||.++..++.... +.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~ 82 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG 82 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence 59999999999999999999999999999999998 467889999999999999999999999998776543110 00
Q ss_pred CCCCCCC-CCCCCC---CCCcc---------------ccCCC-c--------cCchh--HHHHHHHHHH----HHHHHHH
Q 042055 121 IPYTSCK-SPVNSR---ASKYK---------------AWNPA-A--------WSRSY--KILRNLRDIK----ERFKEEA 166 (245)
Q Consensus 121 ~~~~~~~-~~~~~~---~~~~~---------------~w~~~-~--------~~r~~--~~~~~l~~~~----~~~~~e~ 166 (245)
.++.... ...... ..+|. .+... . +..++ .+...|++++ ..+...+
T Consensus 83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r 162 (397)
T PRK14281 83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence 0010000 000000 00010 00000 0 11121 2233555654 4455566
Q ss_pred HH-HHHHHhccccccccCCCCCCCCcccc--eeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 167 KV-IENCLSAAASRKESLLVNPSSNLFQS--RHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 167 ~v-ce~C~g~g~k~~~~~~~~~~~~C~G~--~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
.+ |..|.|+|.+.. .+. +|..|.|. ..+.++..+++.++ +++|+.|+|+|++|++++
T Consensus 163 ~~~C~~C~G~G~~~~-~~~--~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~~~C 222 (397)
T PRK14281 163 QVPCKECNGTGSKTG-ATE--TCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVKDRC 222 (397)
T ss_pred eecCCCCCCcccCCC-CCc--cCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeCCCC
Confidence 66 999999988765 444 44457666 44455566777765 569999999999998763
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=2e-28 Score=226.80 Aligned_cols=179 Identities=22% Similarity=0.249 Sum_probs=121.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhcccc-CC-
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIEC-NR- 120 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~-~~- 120 (245)
..|||+||||+++|+.++||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|+.||.++..++.... ++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 369999999999999999999999999999999998 577899999999999999999999999998876543110 00
Q ss_pred CCCCC-CCCCCCCCCCCcc-c---cC----CCccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCC
Q 042055 121 IPYTS-CKSPVNSRASKYK-A---WN----PAAWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLL 184 (245)
Q Consensus 121 ~~~~~-~~~~~~~~~~~~~-~---w~----~~~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~ 184 (245)
..+.. ..........+|. + +. ......++ .+...|++++ ..+..++.+ |..|.|+|......+.
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 162 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPT 162 (366)
T ss_pred CccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcc
Confidence 00000 0000000001111 0 00 00011122 2223555664 455566666 9999999988777665
Q ss_pred CCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 185 VNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 185 ~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
+|+ .|.|.+.+..+. +|.+ +++.|+.|+|+|+++++++
T Consensus 163 ~C~--~C~G~G~~~~~~--G~~~-~~~~C~~C~G~G~~~~~~C 200 (366)
T PRK14294 163 TCP--QCGGSGQVTQSQ--GFFS-IRTTCPRCRGMGKVIVSPC 200 (366)
T ss_pred cCC--CcCCeEEEEEEe--eeEE-EEeeCCCCCCcCeecCcCC
Confidence 444 499997776665 4554 5679999999999988763
No 24
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.95 E-value=1.2e-28 Score=229.28 Aligned_cols=180 Identities=20% Similarity=0.210 Sum_probs=121.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccC--CC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECN--RI 121 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~--~~ 121 (245)
.|||+||||+++|+.++||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||.++..++....+ ..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~ 83 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSG 83 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCC
Confidence 59999999999999999999999999999999998 5678999999999999999999999999988665431100 00
Q ss_pred CCCCCC-----CCCCCCCCCccc-cCCC-------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccc
Q 042055 122 PYTSCK-----SPVNSRASKYKA-WNPA-------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKE 181 (245)
Q Consensus 122 ~~~~~~-----~~~~~~~~~~~~-w~~~-------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~ 181 (245)
.+.... .+......+|.+ +... .+..++ .+...|++.+ .++..++.+ |..|.|+|...+.
T Consensus 84 ~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 163 (380)
T PRK14297 84 GFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGT 163 (380)
T ss_pred CCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCC
Confidence 010000 000000111110 1000 011121 2223555554 455566666 9999999988777
Q ss_pred cCCCCCCCCcccce--eEEeeecccccccccccCCCCcccceeecCCC
Q 042055 182 SLLVNPSSNLFQSR--HRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 182 ~~~~~~~~~C~G~~--~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
.+.+|+. |.|.+ .+.++..|++.+ +++.|+.|+|+|.+++++.
T Consensus 164 ~~~~C~~--C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~~~C 208 (380)
T PRK14297 164 SPKTCDK--CGGTGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIEDPC 208 (380)
T ss_pred cCccCCC--ccCeEEEEEEEEcCCceeE-EEEeCCCCCCCceEcCCCC
Confidence 6654555 87774 344456666655 4679999999999987663
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=3.7e-28 Score=225.34 Aligned_cols=177 Identities=20% Similarity=0.252 Sum_probs=120.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhcccc--CC-C
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIEC--NR-I 121 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~--~~-~ 121 (245)
.|||+||||+++|+.++||+|||+||++||||+++.+.++++|++|++||++|+|+.+|+.||.++...+.... +. .
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g 82 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG 82 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence 59999999999999999999999999999999998778899999999999999999999999998765543110 00 0
Q ss_pred CCCCCC-CCCCCCCCCcccc-CCC---------ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccC
Q 042055 122 PYTSCK-SPVNSRASKYKAW-NPA---------AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESL 183 (245)
Q Consensus 122 ~~~~~~-~~~~~~~~~~~~w-~~~---------~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~ 183 (245)
.+.... .........|..+ ... .+..++ .+...|++.+ ..+..++.+ |..|.|+|.+.+..+
T Consensus 83 ~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~ 162 (372)
T PRK14300 83 NHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETV 162 (372)
T ss_pred CCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCC
Confidence 000000 0000000111111 100 011122 2222455553 455556777 999999998777666
Q ss_pred CCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCC
Q 042055 184 LVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 184 ~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
.+ |..|.|++.++.+. +|.+ ++..|+.|+|+|.+|++|
T Consensus 163 ~~--C~~C~G~G~~~~~~--g~~~-~~~~C~~C~G~G~~~~~~ 200 (372)
T PRK14300 163 TT--CDACSGVGATRMQQ--GFFT-IEQACHKCQGNGQIIKNP 200 (372)
T ss_pred cc--CCCccCeEEEEEee--ceEE-EEEeCCCCCccceEeCCC
Confidence 54 44599997666543 5665 556999999999999766
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=7.9e-28 Score=223.87 Aligned_cols=176 Identities=24% Similarity=0.244 Sum_probs=118.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCC----
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNR---- 120 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~---- 120 (245)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||.++..++......
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 82 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQ 82 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccccc
Confidence 5999999999999999999999999999999999988899999999999999999999999999887654321100
Q ss_pred CCCCCCCCCC--CCC---------CCCccc----cCC------CccCchh--HHHHHHHHHH----HHHHHHHHH-HHHH
Q 042055 121 IPYTSCKSPV--NSR---------ASKYKA----WNP------AAWSRSY--KILRNLRDIK----ERFKEEAKV-IENC 172 (245)
Q Consensus 121 ~~~~~~~~~~--~~~---------~~~~~~----w~~------~~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C 172 (245)
..+....... ... +..|.. +.. .....++ .....|++.+ ..+...+.+ |..|
T Consensus 83 ~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C 162 (382)
T PRK14291 83 EGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEAC 162 (382)
T ss_pred cccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCC
Confidence 0110000000 000 000110 000 0011121 2222455554 455556666 9999
Q ss_pred HhccccccccCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCC
Q 042055 173 LSAAASRKESLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 173 ~g~g~k~~~~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
.|+|++....+.+|+. |.|.+.+.... +| ++++..|+.|+|+|. |+++
T Consensus 163 ~G~G~~~~~~~~~C~~--C~G~G~~~~~~--g~-~~~~~~C~~C~G~G~-~~~~ 210 (382)
T PRK14291 163 GGTGYDPGSGEKVCPT--CGGSGEIYQRG--GF-FRISQTCPTCGGEGV-LREP 210 (382)
T ss_pred ccccCCCCCCCccCCC--CCCceEEEEec--ce-EEEEecCCCCCCceE-EccC
Confidence 9999887776664444 99987666553 23 345679999999994 6554
No 27
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=7.6e-28 Score=223.46 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=120.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPYT 124 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~ 124 (245)
.|||+||||+++|+.++||+|||+|++++|||+|+++.++++|++|++||++|+||.+|+.||.++...+....+...+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~ 82 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMG 82 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCcc
Confidence 59999999999999999999999999999999999888999999999999999999999999998765442110000000
Q ss_pred CCCCCCCCCCCCccccCC----------C--ccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCC
Q 042055 125 SCKSPVNSRASKYKAWNP----------A--AWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLV 185 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~w~~----------~--~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~ 185 (245)
...........+|.++.. . ....++ .+...|++.+ ..+...+.+ |..|.|+|.+......+
T Consensus 83 ~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~ 162 (374)
T PRK14293 83 DMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTT 162 (374)
T ss_pred cccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCee
Confidence 000000000001111100 0 011122 2223555554 445555666 99999998877665554
Q ss_pred CCCCCccccee--EEeeecccccccccccCCCCcccceeecCC
Q 042055 186 NPSSNLFQSRH--RTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 186 ~~~~~C~G~~~--~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
|+. |.|.+. +.++..|++.++ ++.|+.|+|+|++++++
T Consensus 163 C~~--C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~~~ 202 (374)
T PRK14293 163 CST--CGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIEDP 202 (374)
T ss_pred CCC--CCCcceEEEEEecCcceEEE-EeeCCCCCcceeEeccC
Confidence 444 877744 444566777775 57999999999998766
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=8.2e-28 Score=222.56 Aligned_cols=179 Identities=23% Similarity=0.282 Sum_probs=119.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR--KAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIP 122 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~ 122 (245)
.|||+||||+++|+.++||+|||+||+++|||+|+.. .|+++|++|++||++|+||.+|+.||.++..++....+...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 5999999999999999999999999999999999843 68899999999999999999999999987665431100000
Q ss_pred CCC---CCCCCCCCCCCccc---------cCCCcc----Cchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccc
Q 042055 123 YTS---CKSPVNSRASKYKA---------WNPAAW----SRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASR 179 (245)
Q Consensus 123 ~~~---~~~~~~~~~~~~~~---------w~~~~~----~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~ 179 (245)
+.. ...+......+|.+ +..... ..++ .+...|++++ ..+...+.+ |..|.|+|...
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~ 162 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN 162 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence 000 00000000001110 000000 1122 2223555554 444555666 99999998766
Q ss_pred cccCCCCCCCCcccceeEEeeeccccccc-ccccCCCCcccceeecCC
Q 042055 180 KESLLVNPSSNLFQSRHRTQKETPVFDPS-DYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 180 ~~~~~~~~~~~C~G~~~~~~q~~p~f~~~-~~~~C~~C~G~G~iik~p 226 (245)
. .+. +|..|.|.+.+.....++|+.+ .+..|+.|+|+|.+++++
T Consensus 163 ~-~~~--~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~ 207 (365)
T PRK14290 163 G-KLI--TCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEK 207 (365)
T ss_pred C-CCc--cCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCC
Confidence 5 344 4555888866665556777654 456999999999998766
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=6.6e-27 Score=218.01 Aligned_cols=179 Identities=25% Similarity=0.278 Sum_probs=120.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPY 123 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~ 123 (245)
.|||+||||+++|+.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||.++..++....+...+
T Consensus 5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~ 84 (386)
T PRK14289 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGF 84 (386)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCC
Confidence 69999999999999999999999999999999998 56789999999999999999999999999876543211000001
Q ss_pred CCCCC-CCC----C---CCCCccc------cCC------CccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhcc
Q 042055 124 TSCKS-PVN----S---RASKYKA------WNP------AAWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAA 176 (245)
Q Consensus 124 ~~~~~-~~~----~---~~~~~~~------w~~------~~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g 176 (245)
..... ... . .+..+.+ +.. ..+..++ .+...|++.+ ..+...+.+ |..|.|+|
T Consensus 85 ~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G 164 (386)
T PRK14289 85 SGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTG 164 (386)
T ss_pred CCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCC
Confidence 00000 000 0 0000000 000 0011111 2222455554 445555666 99999999
Q ss_pred ccccccCCCCCCCCcccc--eeEEeeecccccccccccCCCCcccceeecCC
Q 042055 177 ASRKESLLVNPSSNLFQS--RHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 177 ~k~~~~~~~~~~~~C~G~--~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
......+.+|+. |.|. ..+.++.++|+.+. +..|+.|+|+|.++.++
T Consensus 165 ~~~~~~~~~C~~--C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~~~ 213 (386)
T PRK14289 165 AEGNNGSETCPT--CKGSGSVTRVQNTILGTMQT-QSTCPTCNGEGKIIKKK 213 (386)
T ss_pred CCCCCCCCcCCC--CcCeEEEEEEEecccceEEE-EEecCCCCccccccCcC
Confidence 877766665555 7666 44455567788865 78999999999998765
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=4.4e-27 Score=218.17 Aligned_cols=181 Identities=20% Similarity=0.255 Sum_probs=118.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCC
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPY 123 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~ 123 (245)
++|||+||||+++|+.++||+|||+|++++|||+++++.++++|++|++||++|+||.+|+.||.++........+..++
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~ 80 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPF 80 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCccc
Confidence 47999999999999999999999999999999999988899999999999999999999999999876432100000011
Q ss_pred CCCC-CCCCCCCCCccc--cC-----C-CccCchh--HHHHHHHHHH----HHHHHHHHH-HHHHHhccccccccCCCCC
Q 042055 124 TSCK-SPVNSRASKYKA--WN-----P-AAWSRSY--KILRNLRDIK----ERFKEEAKV-IENCLSAAASRKESLLVNP 187 (245)
Q Consensus 124 ~~~~-~~~~~~~~~~~~--w~-----~-~~~~r~~--~~~~~l~~~~----~~~~~e~~v-ce~C~g~g~k~~~~~~~~~ 187 (245)
.... .+...+...|.+ +. . .....++ .....|++.+ ..+..++.+ |..|.|+|.+....+ ...
T Consensus 81 ~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~-~~~ 159 (371)
T PRK14292 81 GGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKP-PKT 159 (371)
T ss_pred CccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCC-Ccc
Confidence 1000 000000001110 00 0 0011121 2223555554 345555656 999999987655432 134
Q ss_pred CCCcccceeEE--eeecccccccccccCCCCcccceeecCC
Q 042055 188 SSNLFQSRHRT--QKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 188 ~~~C~G~~~~~--~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
|..|.|.+.+. .+..++++++ +..|+.|+|+|.+++++
T Consensus 160 C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~~~ 199 (371)
T PRK14292 160 CPTCRGAGAVRAQARTIFGVVET-QQPCPTCRGEGQIITDP 199 (371)
T ss_pred CCCCCCccEEEEEEeccCceEEE-eeecCCCcccceecCCC
Confidence 55588885443 3355677764 66999999999998765
No 31
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-25 Score=200.86 Aligned_cols=73 Identities=41% Similarity=0.570 Sum_probs=69.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhcc
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCI 116 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~ 116 (245)
.+|||+||||+++|+..+||+|||+||++||||||+ +|.|.+.|++|+.||+|||||++|+.||.++++++..
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 479999999999999999999999999999999999 8999999999999999999999999999999888764
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.2e-25 Score=199.02 Aligned_cols=167 Identities=25% Similarity=0.301 Sum_probs=118.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccccCCCCCC
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIECNRIPYT 124 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~ 124 (245)
.|||+||||+++|+..|||+||++||++||||.|..+.|.++|++|.+||++|+|+++|..||..+..+.....+
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g----- 117 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGG----- 117 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccC-----
Confidence 399999999999999999999999999999999999999999999999999999999999999998765111100
Q ss_pred CCCCCCCCCCCCccc--------cCCCccCchhHHHHHHHHHHHHHHHHHHH-HHHHHhccccccccCCCCCCCCcccce
Q 042055 125 SCKSPVNSRASKYKA--------WNPAAWSRSYKILRNLRDIKERFKEEAKV-IENCLSAAASRKESLLVNPSSNLFQSR 195 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~--------w~~~~~~r~~~~~~~l~~~~~~~~~e~~v-ce~C~g~g~k~~~~~~~~~~~~C~G~~ 195 (245)
.+.......|.. +..... -.+.|.++.+.++.++..+... |+.|.+.|+.++..... |..|.|..
T Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~ 191 (288)
T KOG0715|consen 118 ---NPFDVFLEFFGGKMNKRVPDKDQYYD-LSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRES--CKTCSGRG 191 (288)
T ss_pred ---CccchHHHhhcccccccccCcccccc-cccCHHHHhhccccceEEEeecccccccCcCccccccccc--chhhhCcc
Confidence 000000111111 111111 2234556666665555555444 99999999888877764 44488885
Q ss_pred eE-EeeecccccccccccCCCCcccceeecCC
Q 042055 196 HR-TQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 196 ~~-~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
.+ ..+..|.+.. +|.+|+|+|.++.+.
T Consensus 192 ~~~~~~~~~f~~~----~~~~c~~~~~~~~~~ 219 (288)
T KOG0715|consen 192 LVSNPKEDPFILY----TCSYCLGRGLVLRDN 219 (288)
T ss_pred cccccccCCccee----ecccccccceeccch
Confidence 33 3344443433 699999999998876
No 33
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5e-20 Score=170.63 Aligned_cols=104 Identities=31% Similarity=0.462 Sum_probs=88.8
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhcc
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR----KAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCI 116 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~ 116 (245)
+..+.|||.+|+|+++||.+||++|||++++.|||||..+| .|++.|+.|.+||||||||.+|++||.++.+++.
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~- 83 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK- 83 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc-
Confidence 55667999999999999999999999999999999998754 4789999999999999999999999999876652
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccCCCccCchhHHHHHHHHHHHHHHHHHHH
Q 042055 117 ECNRIPYTSCKSPVNSRASKYKAWNPAAWSRSYKILRNLRDIKERFKEEAKV 168 (245)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~r~~~~~~~l~~~~~~~~~e~~v 168 (245)
..+|+-..+.+..+ ++++.+++++.++..
T Consensus 84 --------------------t~gwEl~~r~~tpe---EIreE~Erl~r~~de 112 (546)
T KOG0718|consen 84 --------------------TEGWELGFRGKTPE---EIREEYERLQRERDE 112 (546)
T ss_pred --------------------ccCceeecCCCCHH---HHHHHHHHHHHHHHH
Confidence 25788888877654 677777777777665
No 34
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.8e-20 Score=159.38 Aligned_cols=71 Identities=41% Similarity=0.583 Sum_probs=66.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH-RKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
-.|+|+||||+++|+.++||++||+|++++|||++++ |++.++|++||+||++|+||.+|..||.++..++
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 5689999999999999999999999999999999995 8999999999999999999999999999876544
No 35
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.8e-20 Score=164.65 Aligned_cols=69 Identities=45% Similarity=0.652 Sum_probs=65.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhh
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKK 113 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 113 (245)
.|||+||||+++||.++||+|||+||+++|||+|+++.++++|++|++||++|+||.+|+.||.++...
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 699999999999999999999999999999999998889999999999999999999999999987653
No 36
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.78 E-value=2.2e-19 Score=126.00 Aligned_cols=62 Identities=44% Similarity=0.706 Sum_probs=59.5
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHhccchHHHHHHH
Q 042055 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK--AEIAFKLISEAYTCLSDTAKRRAFN 107 (245)
Q Consensus 46 d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~~R~~YD 107 (245)
|||+||||+++++.++|+++|+++++++|||+++... +++.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999998655 8899999999999999999999998
No 37
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2e-19 Score=166.48 Aligned_cols=77 Identities=38% Similarity=0.548 Sum_probs=69.5
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhccc
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH--RKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFCIE 117 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~~ 117 (245)
...++.||+||||..+|++.+||++||+|||+||||||++ ..|++.|++|+.||+|||||..|++||..+...+.+.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 3456899999999999999999999999999999999985 4578899999999999999999999999988777443
No 38
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.6e-19 Score=159.56 Aligned_cols=71 Identities=45% Similarity=0.616 Sum_probs=67.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
++|||+||||+++|+..+|++|||..++++|||||| +|.|.+.|+.|.+||+||+|+.+|..||..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 579999999999999999999999999999999999 89999999999999999999999999999876554
No 39
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.75 E-value=1.7e-18 Score=156.96 Aligned_cols=68 Identities=34% Similarity=0.606 Sum_probs=64.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..|||+||||+++|+.++||+|||+||+++|||+++.+.++++|++|++||++|+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 36999999999999999999999999999999999888899999999999999999999999998763
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.72 E-value=7.2e-18 Score=167.99 Aligned_cols=72 Identities=32% Similarity=0.456 Sum_probs=67.1
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 43 HFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 43 ~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
...|||+||||+++|+..+||+|||+||+++|||+++.+.|..+|+.|++||+|||||.+|+.||.++..++
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 457999999999999999999999999999999999977888999999999999999999999999876544
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.70 E-value=2.4e-17 Score=113.90 Aligned_cols=57 Identities=51% Similarity=0.845 Sum_probs=54.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHhccchH
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK--HRKAEIAFKLISEAYTCLSDTA 101 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~--~~~a~~~f~~i~~Ay~vLsdp~ 101 (245)
+|||+||||+++++.++||++|+++++++|||++. .+.+++.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998 6778999999999999999985
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.2e-17 Score=139.25 Aligned_cols=67 Identities=46% Similarity=0.704 Sum_probs=62.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC---CchHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK---HRKAEIAFKLISEAYTCLSDTAKRRAFNLER 110 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~---~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 110 (245)
.+|+|+||||..+|+..+|++||++|++++|||+++ ...+.+.|+.|+.||+||+|.++|+.||..+
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG 82 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETG 82 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 359999999999999999999999999999999996 4568899999999999999999999999764
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.67 E-value=1e-16 Score=108.67 Aligned_cols=54 Identities=56% Similarity=0.840 Sum_probs=51.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhccc
Q 042055 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH-RKAEIAFKLISEAYTCLSD 99 (245)
Q Consensus 46 d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd 99 (245)
|||+||||+++++.++||++|++|++++|||+++. ..+.+.|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999986 6789999999999999986
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.9e-16 Score=130.92 Aligned_cols=67 Identities=45% Similarity=0.755 Sum_probs=62.9
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 43 HFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK--AEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 43 ~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
...|||+||||+++|+..+|++|||++++++|||+++... +++.|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 4579999999999999999999999999999999998443 899999999999999999999999985
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.6e-16 Score=131.70 Aligned_cols=70 Identities=31% Similarity=0.521 Sum_probs=63.7
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 42 SHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH-RKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 42 ~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
...-|+|+||||+++++..|||+|||+|++++||||++. .+.++.|..|+.||+.|+|+..|..|..+++
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 345699999999999999999999999999999999997 4556778999999999999999999998864
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.62 E-value=5.4e-16 Score=151.76 Aligned_cols=69 Identities=36% Similarity=0.572 Sum_probs=65.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhh
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKK 113 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 113 (245)
.|||+||||+++|+.++||+|||+|++++|||+++.+.+.++|++|++||++|+||.+|+.||.++..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 599999999999999999999999999999999988888899999999999999999999999986544
No 47
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.3e-15 Score=141.35 Aligned_cols=69 Identities=36% Similarity=0.611 Sum_probs=66.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWK 112 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 112 (245)
..|+|.+|||+++++.++||+.||++|...|||||..+.|++.|+.|+.||++|+|+++|..||.++..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999987654
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.58 E-value=2.7e-15 Score=135.84 Aligned_cols=68 Identities=43% Similarity=0.601 Sum_probs=62.6
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR----KAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+..+|||.||||.++|+..||.+|||++|.+||||...+. .|+++|..|..|-+||+||++|+.||.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 34567999999999999999999999999999999998754 488999999999999999999999996
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.57 E-value=1.9e-15 Score=123.76 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=59.1
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 45 IDWYRLLGVDEEA--TIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 45 ~d~Y~iLgv~~~a--s~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..+|+||||+++| |.++||+|||++++++|||++++ +++|++|++||++|+|+.+|..||..+.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 4689999999999 99999999999999999999753 5799999999999999999999998764
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.57 E-value=5.8e-15 Score=122.86 Aligned_cols=68 Identities=28% Similarity=0.522 Sum_probs=59.4
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEE--ATIETIRKRYHKLALQLHPDKNKHRK----AEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~--as~~~Ik~ayr~la~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
+.|||+||||++. ++..+|+++||++++++|||++.... +...+..||+||+||+||.+|+.|+..+.
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 4699999999996 78999999999999999999986422 23457899999999999999999998764
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=9.9e-15 Score=122.04 Aligned_cols=67 Identities=28% Similarity=0.474 Sum_probs=59.2
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 45 IDWYRLLGVDEE--ATIETIRKRYHKLALQLHPDKNKHR------KAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 45 ~d~Y~iLgv~~~--as~~~Ik~ayr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
+|||+||||++. ++..+|+++||++++++|||+.... .+.+.|..||+||++|+||.+|+.|+..+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999995 7889999999999999999997632 145689999999999999999999998654
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.51 E-value=3.6e-14 Score=119.14 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=58.9
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC-chH-----HHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEE--ATIETIRKRYHKLALQLHPDKNKH-RKA-----EIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~--as~~~Ik~ayr~la~~~HPDk~~~-~~a-----~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..|||+||||++. ++..+|+++||+|++++|||+++. +.+ .+.+..||+||++|+||.+|+.|+..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 3799999999995 689999999999999999999873 333 3346899999999999999999998764
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=8.6e-14 Score=116.48 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=60.4
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEE--ATIETIRKRYHKLALQLHPDKNKHR------KAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~--as~~~Ik~ayr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..|||++|||++. ++..+|+++||++++++|||++... .+.+.|..||+||+||+||.+|+.|+..+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4699999999996 7789999999999999999998632 255679999999999999999999998764
No 54
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.1e-14 Score=129.77 Aligned_cols=94 Identities=39% Similarity=0.593 Sum_probs=77.2
Q ss_pred HHHHhhhhhhhhcccccc---cCCCCCCCCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHH
Q 042055 16 VLEICSISTTAIGCAHRR---ISPPSPAESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK--HRKAEIAFKLI 90 (245)
Q Consensus 16 ~~~~~~~s~~~~~~~~~~---~~~~~~~~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~--~~~a~~~f~~i 90 (245)
|..+=.+-++..+|.+++ -+...++.+.-.|||.||||+..++..+||+|||++++.+|||++. ..+++.+|++|
T Consensus 341 V~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkev 420 (486)
T KOG0550|consen 341 VEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEV 420 (486)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHH
Confidence 444444445555566665 2334455677789999999999999999999999999999999997 36788999999
Q ss_pred HHHHHhccchHHHHHHHHH
Q 042055 91 SEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 91 ~~Ay~vLsdp~~R~~YD~~ 109 (245)
-+||.+|+||.+|..||..
T Consensus 421 geAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 421 GEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HHHHHHhcCHHHHhhcccc
Confidence 9999999999999999974
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.2e-13 Score=121.71 Aligned_cols=70 Identities=44% Similarity=0.655 Sum_probs=64.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHhccchHHHHHHHHHhhhh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR--KAEIAFKLISEAYTCLSDTAKRRAFNLERWKK 113 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 113 (245)
..|||.||+|.++|+.++|++||+++++++|||+|+.+ .++.+|++|.+||++|+|+.+|..||.++...
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~ 73 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEG 73 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccc
Confidence 46999999999999999999999999999999999877 56668999999999999999999999988633
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.3e-13 Score=119.94 Aligned_cols=65 Identities=34% Similarity=0.572 Sum_probs=62.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
.|-|+||||.++++..+|.+|||+||+++|||+++.+++.+.|+.|..||++|.|.+.|..||-.
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999964
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.32 E-value=1.6e-12 Score=101.66 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=47.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcc
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLS 98 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 98 (245)
..++|+||||+++++.++|+++||+|++++|||++. ..+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG---s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG---STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHh
Confidence 369999999999999999999999999999999853 4578899999999985
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.31 E-value=2e-12 Score=115.28 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=52.1
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------chHHHHHHHHHHHHHhccc
Q 042055 42 SHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH--------RKAEIAFKLISEAYTCLSD 99 (245)
Q Consensus 42 ~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~--------~~a~~~f~~i~~Ay~vLsd 99 (245)
....|+|+||||++++|.++||++||+|++++|||++.. +.++++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999999999642 3478999999999999985
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.24 E-value=1.8e-11 Score=102.45 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=60.1
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEE--ATIETIRKRYHKLALQLHPDKNKHRK------AEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~--as~~~Ik~ayr~la~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
+.|||++|||++. .+...|+++|++|.+++|||+..... +.+....||+||.+|+||.+|+.|=..+.
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 4699999999996 89999999999999999999986332 44567999999999999999999998765
No 60
>PHA02624 large T antigen; Provisional
Probab=99.24 E-value=7.2e-12 Score=121.52 Aligned_cols=60 Identities=27% Similarity=0.374 Sum_probs=56.3
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHH
Q 042055 44 FIDWYRLLGVDEEA--TIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAF 106 (245)
Q Consensus 44 ~~d~Y~iLgv~~~a--s~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~Y 106 (245)
..++|+||||+++| +.++||+|||++++++|||++. ++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999999974 467999999999999999999998
No 61
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.7e-12 Score=112.66 Aligned_cols=72 Identities=29% Similarity=0.402 Sum_probs=65.1
Q ss_pred CCCCCcccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCC---CchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 38 SPAESHFIDWYRLLGVDE---EATIETIRKRYHKLALQLHPDKNK---HRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 38 ~~~~~~~~d~Y~iLgv~~---~as~~~Ik~ayr~la~~~HPDk~~---~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
.+.+|...|+|.+|||+. -+++.+|.++.++.+.+||||+.. +....+.|+.|+.||+||+|+.+|..||..
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 457888999999999997 488999999999999999999974 455788999999999999999999999974
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.12 E-value=4.8e-11 Score=111.02 Aligned_cols=68 Identities=32% Similarity=0.547 Sum_probs=61.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC------chHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH------RKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
--|+|||||++.+++..+||++||+|+.++||||.+. ..-++.++.|+.||..|+|...|..|-.++.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 3599999999999999999999999999999999873 3457889999999999999999999998864
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.10 E-value=2e-10 Score=94.83 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 57 ATIETIRKRYHKLALQLHPDKNKHR------KAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 57 as~~~Ik~ayr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
.+..+|+++||++++++|||+.... .+...|..||+||++|+||.+|+.|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4678999999999999999996532 256789999999999999999999999875
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.9e-10 Score=95.97 Aligned_cols=66 Identities=35% Similarity=0.575 Sum_probs=59.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 43 HFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH--RKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 43 ~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
-+.|+|+||.|.|..+.++||+.||+|++..|||||++ +.|+.+|-.|..||..|-|+.-|..-+.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 46799999999999999999999999999999999994 6789999999999999999986665543
No 65
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.62 E-value=1.7e-08 Score=71.54 Aligned_cols=58 Identities=10% Similarity=-0.049 Sum_probs=39.5
Q ss_pred HHHHHhccccccccCCCCCCCCcccceeE-EeeecccccccccccCCCCcccceeecCCCcc
Q 042055 169 IENCLSAAASRKESLLVNPSSNLFQSRHR-TQKETPVFDPSDYLFQGYPHLRNRMFIKPQSF 229 (245)
Q Consensus 169 ce~C~g~g~k~~~~~~~~~~~~C~G~~~~-~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~ 229 (245)
|+.|.|+|++.+..+.+|+. |+|++.+ .++..|++..+.+++|+.|+|+|++| +.+.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~--C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~~~C 59 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQ--CNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EKDPC 59 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TT--SSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TSSB-
T ss_pred CCcCCCcccCCCCCCcCCcC--CCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CCCCC
Confidence 67899999988888876666 8777333 33347888888889999999999999 55555
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.1e-07 Score=79.50 Aligned_cols=59 Identities=32% Similarity=0.647 Sum_probs=53.5
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHH-hccch
Q 042055 42 SHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYT-CLSDT 100 (245)
Q Consensus 42 ~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~-vLsdp 100 (245)
...+.+|.||||...|+.++++.||..|++++|||........+.|.+|.+||. ||+..
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999988778889999999998 77754
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.2e-07 Score=68.58 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=45.6
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccch
Q 042055 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDT 100 (245)
Q Consensus 47 ~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 100 (245)
--.||||+++++.+.||.|+|++.+..|||+..+|-...+ ||||+++|...
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsK---INEAKdlLe~~ 108 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASK---INEAKDLLEGT 108 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHH---HHHHHHHHhcc
Confidence 3458999999999999999999999999999998876665 99999999754
No 68
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5e-07 Score=91.61 Aligned_cols=57 Identities=33% Similarity=0.430 Sum_probs=48.2
Q ss_pred CCcccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccc
Q 042055 41 ESHFIDWYRLLGVDEE----ATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSD 99 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~----as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd 99 (245)
.-...+-|+||.|+-+ -..+.||++|++||.+|||||| |+--+.|..|++||+.|+.
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHHH
Confidence 3344578999999863 3458999999999999999999 6677899999999999983
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.7e-05 Score=63.63 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=56.7
Q ss_pred cccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCCC------chHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 43 HFIDWYRLLGVDE--EATIETIRKRYHKLALQLHPDKNKH------RKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 43 ~~~d~Y~iLgv~~--~as~~~Ik~ayr~la~~~HPDk~~~------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..++||.++|... ...++.++.-|.-..+++|||+... ..|.+....||+||.+|.||-+|+.|=....
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3469999998765 3667777879999999999999542 2467779999999999999999999987653
No 70
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.60 E-value=0.0007 Score=52.74 Aligned_cols=48 Identities=8% Similarity=-0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHhccccccccCCCCCCCCcccceeEEeeecccccccccccCCCCcccceee
Q 042055 166 AKVIENCLSAAASRKESLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMF 223 (245)
Q Consensus 166 ~~vce~C~g~g~k~~~~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~ii 223 (245)
...|..|.|+|.. +|..|+|.+.+..+..| .++.+..|+.|+|+|+++
T Consensus 41 ~v~C~~C~GsG~~--------~C~~C~G~G~v~~~~~g--~~q~~~~C~~C~G~Gk~~ 88 (111)
T PLN03165 41 TQPCFPCSGTGAQ--------VCRFCVGSGNVTVELGG--GEKEVSKCINCDGAGSLT 88 (111)
T ss_pred CCCCCCCCCCCCc--------CCCCCcCcCeEEEEeCC--cEEEEEECCCCCCcceee
Confidence 4459999999872 45559999666655544 244567999999999864
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0013 Score=55.08 Aligned_cols=53 Identities=36% Similarity=0.518 Sum_probs=46.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------chHHHHHHHHHHHHHhc
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH--------RKAEIAFKLISEAYTCL 97 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~--------~~a~~~f~~i~~Ay~vL 97 (245)
.|.|.+|++...+...+|+++|+++....|||+-.. ..+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999999541 23678899999999854
No 72
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.49 E-value=0.0029 Score=60.60 Aligned_cols=45 Identities=33% Similarity=0.522 Sum_probs=33.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCCCCch--------HHHHHHHHHHHHHh
Q 042055 52 GVDEEATIETIRKRYHKLALQLHPDKNKHRK--------AEIAFKLISEAYTC 96 (245)
Q Consensus 52 gv~~~as~~~Ik~ayr~la~~~HPDk~~~~~--------a~~~f~~i~~Ay~v 96 (245)
+|..-++.++||++|||..|.+||||.+... +++.|-.+++|+..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 4555579999999999999999999987432 45556666666654
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.003 Score=52.91 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=51.3
Q ss_pred CcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHhccchHHHHHHHHHh
Q 042055 46 DWYRLLGVDEE--ATIETIRKRYHKLALQLHPDKNKHRK------AEIAFKLISEAYTCLSDTAKRRAFNLER 110 (245)
Q Consensus 46 d~Y~iLgv~~~--as~~~Ik~ayr~la~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 110 (245)
|++.++|..+. ...+.++..|+.+.+.+|||+..... +-..+..++.||.+|.||-.|..|=...
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal 74 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLAL 74 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 45666666664 34677899999999999999987332 2346899999999999999999997654
No 74
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.97 E-value=0.016 Score=46.31 Aligned_cols=54 Identities=28% Similarity=0.290 Sum_probs=40.3
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHH
Q 042055 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAK 102 (245)
Q Consensus 46 d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~ 102 (245)
.-..||+|++.++.++|.+.|.+|....+|++..+.-...+ |..|.+.|..+.+
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSK---V~rAKErl~~El~ 112 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSK---VFRAKERLEQELK 112 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHH---HHHHHHHHHHHHH
Confidence 45689999999999999999999999999999876655544 8999999886553
No 75
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=0.077 Score=49.55 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=39.2
Q ss_pred HHHHHHhcccccccc-----CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 168 VIENCLSAAASRKES-----LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 168 vce~C~g~g~k~~~~-----~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
.|.+|+|+|...... ...-+|..|+|.+..+ ..| |+.|||.|.+-+...-=-.||.+
T Consensus 161 tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i--~~p---------C~~C~G~G~v~~~~~i~V~IPaG 222 (371)
T COG0484 161 TCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII--KDP---------CGKCKGKGRVKKKKSISVNIPAG 222 (371)
T ss_pred cCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC--CCC---------CCCCCCCCeEeeeeEEEEECCCC
Confidence 499999998544333 2223555599997666 345 99999999977766655566654
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=0.5 Score=43.28 Aligned_cols=53 Identities=32% Similarity=0.434 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----CchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 57 ATIETIRKRYHKLALQLHPDKNK-----HRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 57 as~~~Ik~ayr~la~~~HPDk~~-----~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
++..+|..+|+..++.+||++.. ....++.|+.|.+||.+|++..+|..+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 57789999999999999999874 224567799999999999987666666654
No 77
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=85.62 E-value=0.12 Score=36.21 Aligned_cols=43 Identities=5% Similarity=0.015 Sum_probs=27.2
Q ss_pred HHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccc
Q 042055 168 VIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRN 220 (245)
Q Consensus 168 vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G 220 (245)
.|..|.|+|...... ....+|..|.|.+..+ ...| |+.|+|+|
T Consensus 17 ~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~~~---------C~~C~G~g 66 (66)
T PF00684_consen 17 TCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EKDP---------CKTCKGSG 66 (66)
T ss_dssp E-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TSSB----------SSSTTSS
T ss_pred CCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CCCC---------CCCCCCcC
Confidence 399999998655433 2234666799987765 4444 99999986
No 78
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=85.01 E-value=0.52 Score=40.03 Aligned_cols=32 Identities=3% Similarity=-0.163 Sum_probs=23.8
Q ss_pred CCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 187 PSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 187 ~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
+|..|+|.+..++...| |+.|+|+|.+-...+
T Consensus 101 ~C~~C~G~G~~i~~~~~---------C~~C~G~G~v~~~~~ 132 (186)
T TIGR02642 101 KCPRCRGTGLIQRRQRE---------CDTCAGTGRFRPTVE 132 (186)
T ss_pred cCCCCCCeeEEecCCCC---------CCCCCCccEEeeeEE
Confidence 44449999877765566 999999999865443
No 79
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=84.58 E-value=0.72 Score=39.19 Aligned_cols=27 Identities=4% Similarity=0.058 Sum_probs=18.0
Q ss_pred HHHHHHHHhccccccccCCCCCCCCcccce
Q 042055 166 AKVIENCLSAAASRKESLLVNPSSNLFQSR 195 (245)
Q Consensus 166 ~~vce~C~g~g~k~~~~~~~~~~~~C~G~~ 195 (245)
...|+.|.|+|..-... .+|..|.|.+
T Consensus 99 ~~~C~~C~G~G~~i~~~---~~C~~C~G~G 125 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ---RECDTCAGTG 125 (186)
T ss_pred CCcCCCCCCeeEEecCC---CCCCCCCCcc
Confidence 44599999998654432 3566688773
No 80
>PRK14277 chaperone protein DnaJ; Provisional
Probab=83.84 E-value=0.29 Score=45.98 Aligned_cols=58 Identities=7% Similarity=-0.034 Sum_probs=38.2
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|+|.+-....--..||.+
T Consensus 173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~l~V~Ip~G 237 (386)
T PRK14277 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT--D---------PCNKCGGTGRIRRRRKIKVNIPAG 237 (386)
T ss_pred ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc--C---------CCCCCCCCcEEeeeeEEEEecCCC
Confidence 3499999998543221 12247777999976642 2 399999999876655555556653
No 81
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=83.77 E-value=0.28 Score=46.73 Aligned_cols=59 Identities=2% Similarity=-0.195 Sum_probs=38.4
Q ss_pred HHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 168 VIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 168 vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
.|..|.|+|...... ....+|..|.|.+..+....+ |+.|+|+|.+-....-=-.||.|
T Consensus 168 ~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~---------C~~C~G~g~v~~~~~l~V~Ip~G 233 (421)
T PTZ00037 168 DCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKK---------CKNCSGKGVKKTRKILEVNIDKG 233 (421)
T ss_pred cCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccccc---------CCcCCCcceeeeeeEEEEeeCCC
Confidence 499999998532111 122356669888776654455 99999999886655544455554
No 82
>PRK14278 chaperone protein DnaJ; Provisional
Probab=83.25 E-value=0.33 Score=45.48 Aligned_cols=58 Identities=7% Similarity=-0.044 Sum_probs=37.7
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|+|.+.+...---.||.+
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~~~V~Ip~G 221 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP--D---------PCHECAGDGRVRARREITVKIPAG 221 (378)
T ss_pred eecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC--C---------CCCCCCCceeEecceEEEEEECCC
Confidence 3499999998533221 11236666988876542 2 399999999886665555556654
No 83
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=82.75 E-value=0.33 Score=44.94 Aligned_cols=57 Identities=7% Similarity=-0.033 Sum_probs=38.3
Q ss_pred HHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 168 VIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 168 vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
.|..|.|+|...... ....+|..|.|.+..++. .|+.|+|+|.+-....---.||.+
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~-----------~C~~C~G~g~v~~~~~l~V~Ip~G 225 (354)
T TIGR02349 162 TCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKE-----------PCSTCKGKGRVKERKTITVKIPAG 225 (354)
T ss_pred cCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCC-----------CCCCCCCCcEecccceEEEEECCC
Confidence 499999997533221 123477779998655421 399999999887766666666654
No 84
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=82.31 E-value=3.2 Score=35.43 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchH
Q 042055 54 DEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTA 101 (245)
Q Consensus 54 ~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~ 101 (245)
+++|+.|||.+|+.++..+|--| ++.-..|..||+.|.=..
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~r 41 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILMER 41 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999444 234556999998766443
No 85
>PF13446 RPT: A repeated domain in UCH-protein
Probab=82.16 E-value=2.2 Score=29.21 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHH
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLAL 71 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~ 71 (245)
.+-|++|||+++++.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988766
No 86
>PRK14298 chaperone protein DnaJ; Provisional
Probab=79.82 E-value=0.39 Score=45.07 Aligned_cols=58 Identities=7% Similarity=-0.051 Sum_probs=37.5
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|+|.+-....---.||.+
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~l~V~IppG 223 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE--S---------PCPVCSGTGKVRKTRKITVNVPAG 223 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC--C---------CCCCCCCccEEEEEEEEEecCCCC
Confidence 3499999998543221 12346777988865432 1 399999999887665555556654
No 87
>PRK14301 chaperone protein DnaJ; Provisional
Probab=79.63 E-value=0.58 Score=43.81 Aligned_cols=58 Identities=7% Similarity=-0.062 Sum_probs=38.1
Q ss_pred HHHHHHHhcccccccc---CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES---LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~---~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|+|.+.....---.||.+
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~l~V~Ip~G 222 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT--H---------PCPKCKGSGIVQQTRELKVRIPAG 222 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC--C---------CCCCCCCCceeccceEEEEEeCCC
Confidence 3499999997533221 12356777988876542 1 399999999887665555556654
No 88
>PRK14300 chaperone protein DnaJ; Provisional
Probab=78.83 E-value=0.61 Score=43.63 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=36.7
Q ss_pred HHHHHHhccccccccC---CCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 168 VIENCLSAAASRKESL---LVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 168 vce~C~g~g~k~~~~~---~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
.|..|.|+|....... ...+|..|.|.+..+. .| |+.|+|+|.+-....-=-.||.+
T Consensus 164 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--~~---------C~~C~G~g~v~~~~~~~V~Ip~G 223 (372)
T PRK14300 164 TCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK--NP---------CKKCHGMGRYHKQRNLSVNIPAG 223 (372)
T ss_pred cCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC--CC---------CCCCCCceEEEeeEEEEEEECCC
Confidence 4999999986543211 2346777998876542 23 99999999975544433345543
No 89
>PRK14293 chaperone protein DnaJ; Provisional
Probab=78.67 E-value=0.58 Score=43.77 Aligned_cols=58 Identities=9% Similarity=-0.019 Sum_probs=37.7
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|+|.+.+...---.||.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~~~V~IppG 225 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE--D---------PCDACGGQGVKQVTKKLKINIPAG 225 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec--c---------CCCCCCCCcccccceEEEEEeCCC
Confidence 3499999998543211 12347777988865432 2 399999999886665544555553
No 90
>PRK14285 chaperone protein DnaJ; Provisional
Probab=77.86 E-value=0.71 Score=43.09 Aligned_cols=58 Identities=5% Similarity=-0.033 Sum_probs=37.6
Q ss_pred HHHHHHHhccccccc---cCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKE---SLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~---~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|..... .....+|..|.|.+..+. . .|+.|+|+|.+-....---.||.+
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~~~V~Ip~G 224 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS--N---------PCKSCKGKGSLKKKETIELKIPAG 224 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCcccccC--C---------CCCCCCCCCEEeccEEEEEEECCC
Confidence 349999999753321 122356777988865532 2 399999999886655555556654
No 91
>PRK14296 chaperone protein DnaJ; Provisional
Probab=77.79 E-value=0.58 Score=43.80 Aligned_cols=58 Identities=5% Similarity=-0.033 Sum_probs=35.3
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. -.|+.|+|+|.+-....-=-.||.+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~-----------~~C~~C~G~g~v~~~~~~~V~Ip~G 231 (372)
T PRK14296 167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK-----------NKCKNCKGKGKYLERKKIEVNIPKG 231 (372)
T ss_pred ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec-----------ccccCCCCceEEEEEEEEEEEECCC
Confidence 3499999998644321 12246666888865532 2399999999764443333344443
No 92
>PRK14280 chaperone protein DnaJ; Provisional
Probab=77.19 E-value=0.55 Score=43.99 Aligned_cols=58 Identities=7% Similarity=0.005 Sum_probs=35.9
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|+|.+-+...---.||.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~i~V~Ip~G 225 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK--E---------KCPTCHGKGKVRKRKKINVKIPAG 225 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec--C---------CCCCCCCceEEEEEEEEEEEeCCC
Confidence 3499999997532211 12236667988865532 2 399999999885554444445543
No 93
>PRK14289 chaperone protein DnaJ; Provisional
Probab=76.37 E-value=0.59 Score=43.88 Aligned_cols=49 Identities=2% Similarity=-0.105 Sum_probs=31.8
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCC
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
..|..|.|+|...... ....+|..|.|.+..+. -.|+.|+|+|.+-...
T Consensus 172 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----------~~C~~C~G~g~v~~~~ 227 (386)
T PRK14289 172 ETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK-----------KKCKKCGGEGIVYGEE 227 (386)
T ss_pred CcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC-----------cCCCCCCCCcEEeeeE
Confidence 3499999997543221 12356667888865432 1399999999875543
No 94
>PRK14294 chaperone protein DnaJ; Provisional
Probab=76.31 E-value=0.86 Score=42.51 Aligned_cols=58 Identities=7% Similarity=-0.049 Sum_probs=39.0
Q ss_pred HHHHHHHhcccccccc---CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES---LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~---~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
.+|..|.|.|...... ....+|..|.|.+..+. -.|+.|+|.|.+.....---.||.+
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-----------~~C~~C~G~g~v~~~~~l~V~Ip~G 222 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV-----------SPCKTCHGQGRVRVSKTVQVKIPAG 222 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC-----------cCCCCCCCceEeecceeEEEecCCC
Confidence 4599999997533211 12346777998876532 2499999999987766666666665
No 95
>PRK14286 chaperone protein DnaJ; Provisional
Probab=76.04 E-value=0.81 Score=42.81 Aligned_cols=58 Identities=5% Similarity=-0.098 Sum_probs=37.6
Q ss_pred HHHHHHHhcccccccc---CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES---LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~---~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|+|.+-+...--..||.+
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~~~~~~~l~V~Ip~G 228 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS--N---------PCKTCGGQGLQEKRRTINIKIPPG 228 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec--c---------cCCCCCCCcEEecceEEEEEECCC
Confidence 3499999997533221 12346777998875542 2 399999999876655555555543
No 96
>PRK14276 chaperone protein DnaJ; Provisional
Probab=75.98 E-value=0.53 Score=44.15 Aligned_cols=57 Identities=5% Similarity=-0.111 Sum_probs=35.0
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPR 234 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~ 234 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|+|.+-....---.||.
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~~~~~~~l~V~Ip~ 227 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK--E---------PCQTCHGTGHEKQAHTVSVKIPA 227 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc--C---------CCCCCCCceEEEEEEEEEEEeCC
Confidence 3499999997543221 12346677888865542 2 39999999987554443344554
No 97
>PRK14290 chaperone protein DnaJ; Provisional
Probab=75.67 E-value=0.72 Score=43.01 Aligned_cols=57 Identities=7% Similarity=-0.049 Sum_probs=37.5
Q ss_pred HHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 168 VIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 168 vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
.|..|.|+|...... ....+|..|.|.+... ...|+.|+|+|.+.....-=-.||.+
T Consensus 167 ~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~~~~~~~V~Ip~G 230 (365)
T PRK14290 167 TCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-----------EEKCPRCNGTGTVVVNEDISVKIPKG 230 (365)
T ss_pred cCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-----------cCCCCCCCCceeEEEeeEEEEEECCC
Confidence 499999998543321 1124666798887652 22499999999987665555555554
No 98
>PRK14279 chaperone protein DnaJ; Provisional
Probab=75.55 E-value=0.97 Score=42.61 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=37.8
Q ss_pred HHHHHHHhccccccccC---CCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKESL---LVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~~---~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|....... ...+|..|.|.+..+. . .|+.|+|.|.+.....-=-.||.+
T Consensus 191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~--~---------~C~~C~G~g~v~~~~~~~V~Ip~G 251 (392)
T PRK14279 191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE--D---------PCEECKGTGVTTRTRTINVRIPPG 251 (392)
T ss_pred CCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC--C---------cCCCCCCCeEEEEeeeeEEEeCCC
Confidence 44999999975432221 2346777999876542 2 399999999886655444445554
No 99
>PRK14292 chaperone protein DnaJ; Provisional
Probab=74.91 E-value=0.84 Score=42.62 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=37.1
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPR 234 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~ 234 (245)
..|..|.|+|...... ....+|..|.|.+..+ ...|+.|+|+|.+.....-=-.||.
T Consensus 158 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~~~~~~~V~Ip~ 221 (371)
T PRK14292 158 KTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----------TDPCTVCRGRGRTLKAETVKVKLPR 221 (371)
T ss_pred ccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----------CCCCCCCCCceEEeecceEEEEECC
Confidence 3499999998654322 1124677798887653 1359999999988665544444444
No 100
>PRK14281 chaperone protein DnaJ; Provisional
Probab=74.71 E-value=0.86 Score=43.02 Aligned_cols=58 Identities=7% Similarity=-0.087 Sum_probs=38.2
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|.|...... ....+|..|.|.+..+. .+ |+.|+|.|.+-....-=-.||.+
T Consensus 180 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~~---------C~~C~G~g~v~~~~~~~V~Ip~G 244 (397)
T PRK14281 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK--DR---------CPACYGEGIKQGEVTVKVTVPAG 244 (397)
T ss_pred ccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC--CC---------CCCCCCCccEecceEEEEecCCC
Confidence 3499999998543321 12346777999875542 23 99999999886665555556654
No 101
>PRK14297 chaperone protein DnaJ; Provisional
Probab=74.39 E-value=0.95 Score=42.44 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=31.4
Q ss_pred HHHHHHHhccccccc-------cCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecC
Q 042055 167 KVIENCLSAAASRKE-------SLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIK 225 (245)
Q Consensus 167 ~vce~C~g~g~k~~~-------~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~ 225 (245)
..|..|.|+|..... .....+|..|.|.+..+. . .|..|+|.|.+-..
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~ 220 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE--D---------PCNKCHGKGKVRKN 220 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC--C---------CCCCCCCCeEEEeE
Confidence 349999999754211 122347777988875532 2 39999999965443
No 102
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=72.53 E-value=11 Score=27.22 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=35.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHH
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLI 90 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i 90 (245)
+|.-+++|++|-|++.||+.|-++.+.++.--..++...++.|..-
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~A 48 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAA 48 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH
Confidence 3555789999999999999999888888876666655555666443
No 103
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=71.85 E-value=7.6 Score=30.24 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-Cch----HHHHHHHHHHHHHhccch
Q 042055 56 EATIETIRKRYHKLALQLHPDKNK-HRK----AEIAFKLISEAYTCLSDT 100 (245)
Q Consensus 56 ~as~~~Ik~ayr~la~~~HPDk~~-~~~----a~~~f~~i~~Ay~vLsdp 100 (245)
..+..+++.|.|.+-++.|||... .|. .++-++.++.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456778999999999999999865 333 234467777666666543
No 104
>PRK14295 chaperone protein DnaJ; Provisional
Probab=71.44 E-value=1.2 Score=41.88 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=37.3
Q ss_pred HHHHHHHhccccccccC---CCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKESL---LVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~~---~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|....... ...+|..|.|.+..+. . .|+.|+|.|.+.....---.||.+
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~~~~~~~l~V~Ip~G 244 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD--D---------PCLVCKGSGRAKSSRTMQVRIPAG 244 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec--c---------CCCCCCCCceEeeeeEEEEEeCCC
Confidence 44999999975332221 2236667988875542 2 399999999886655555555544
No 105
>PRK10767 chaperone protein DnaJ; Provisional
Probab=71.28 E-value=1.3 Score=41.41 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=35.1
Q ss_pred HHHHHHhcccccccc---CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCc
Q 042055 168 VIENCLSAAASRKES---LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPR 234 (245)
Q Consensus 168 vce~C~g~g~k~~~~---~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~ 234 (245)
.|..|.|+|...... ....+|..|.|.+..+. ..|+.|+|+|.+-....---.||.
T Consensus 161 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-----------~~C~~C~G~g~v~~~~~l~V~Ip~ 219 (371)
T PRK10767 161 TCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK-----------DPCKKCHGQGRVEKEKTLSVKIPA 219 (371)
T ss_pred cCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC-----------CCCCCCCCCceEeeeeeEEEecCC
Confidence 499999997532211 12246777988865532 239999999988655444444554
No 106
>PRK14284 chaperone protein DnaJ; Provisional
Probab=70.66 E-value=1.1 Score=42.26 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=37.3
Q ss_pred HHHHHHHHhccccccc---cCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 166 AKVIENCLSAAASRKE---SLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 166 ~~vce~C~g~g~k~~~---~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
...|..|.|+|..... .....+|..|.|.+..+. -.|+.|+|.|.+-....---.||.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-----------~~C~~C~G~g~v~~~~~l~V~Ip~G 236 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT-----------DPCSVCRGQGRIKDKRSVHVHIPAG 236 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC-----------CcCCCCCCcceecceEEEEEEECCC
Confidence 3459999999753321 112246666988854432 2499999999886655555556654
No 107
>PRK14283 chaperone protein DnaJ; Provisional
Probab=70.29 E-value=1.2 Score=41.64 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=35.7
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCc
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPR 234 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~ 234 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|..|+|+|.+.....---.||.
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~l~V~Ipp 227 (378)
T PRK14283 164 KTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE--K---------PCSNCHGKGVVRETKTISVKIPA 227 (378)
T ss_pred ccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC--C---------CCCCCCCceeeccceeEEEEECC
Confidence 3499999997643221 11246777888865431 2 39999999987665444444443
No 108
>PRK14288 chaperone protein DnaJ; Provisional
Probab=69.36 E-value=1.2 Score=41.74 Aligned_cols=58 Identities=5% Similarity=-0.058 Sum_probs=36.2
Q ss_pred HHHHHHHhcccccccc---CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKES---LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~---~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|...... ....+|..|.|.+..+. . .|+.|+|.|.+.+...-=-.||.+
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--~---------~C~~C~G~g~v~~~~~l~V~IP~G 217 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK--T---------PCQACKGKTYILKDEEIDAIIPEG 217 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc--c---------cCccCCCcceEEEEEEEEEecCCC
Confidence 3499999998532211 12236667888865432 2 399999999876655444455544
No 109
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=68.89 E-value=2.9 Score=39.84 Aligned_cols=34 Identities=9% Similarity=-0.258 Sum_probs=26.0
Q ss_pred ccceeEEee-ecccccccccccCCCCcccceeecC
Q 042055 192 FQSRHRTQK-ETPVFDPSDYLFQGYPHLRNRMFIK 225 (245)
Q Consensus 192 ~G~~~~~~q-~~p~f~~~~~~~C~~C~G~G~iik~ 225 (245)
.|...+.+| ..+.+.......||+|+|+|.+.+.
T Consensus 371 lGLvE~TRkr~~~sL~e~~~~~Cp~C~G~G~v~s~ 405 (414)
T TIGR00757 371 FGLVEMTRKRLRESLMEVLGTVCPHCSGTGIVKTS 405 (414)
T ss_pred CcceEEeccccCcChHHHhcCCCCCCcCeeEEccH
Confidence 677444444 7777777777899999999998764
No 110
>PRK14282 chaperone protein DnaJ; Provisional
Probab=67.60 E-value=1.3 Score=41.31 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=34.1
Q ss_pred HHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 168 VIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 168 vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
.|..|.|+|...... ....+|..|.|.+..+. -.|+.|+|.|.+-....-=-.||.+
T Consensus 171 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----------~~C~~C~G~g~v~~~~~l~V~Ip~G 234 (369)
T PRK14282 171 TCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG-----------EYCHECGGSGRIRRRVRTTVKIPAG 234 (369)
T ss_pred CCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC-----------CCCCCCCCceeEEEEEEEEEEeCCC
Confidence 499999997543221 12346667988865431 2399999999765433333344443
No 111
>PRK14291 chaperone protein DnaJ; Provisional
Probab=64.74 E-value=2.1 Score=40.24 Aligned_cols=57 Identities=11% Similarity=-0.076 Sum_probs=35.6
Q ss_pred HHHHHHHhccccccc---cCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 167 KVIENCLSAAASRKE---SLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 167 ~vce~C~g~g~k~~~---~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
..|..|.|+|..... .....+|..|.|.+. + . ..|+.|+|.|.+-....-=-.||.+
T Consensus 174 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~--~---------~~C~~C~G~g~v~~~~~l~V~Ip~G 233 (382)
T PRK14291 174 KVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-L--R---------EPCSKCNGRGLVIKKETIKVRIPPG 233 (382)
T ss_pred ccCCCCCCceEEEEecceEEEEecCCCCCCceE-E--c---------cCCCCCCCCceEEeeeEEEEEeCCC
Confidence 349999999753322 112246666888873 2 1 2399999999876655544455544
No 112
>PRK11712 ribonuclease G; Provisional
Probab=63.88 E-value=3.9 Score=39.83 Aligned_cols=43 Identities=9% Similarity=-0.104 Sum_probs=30.2
Q ss_pred ccceeEEe-eecccccccccccCCCCcccceeecCCCcccccCc
Q 042055 192 FQSRHRTQ-KETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPR 234 (245)
Q Consensus 192 ~G~~~~~~-q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~ 234 (245)
.|...+.+ +..+.+.......||+|+|+|.+.+.-.-+..|-|
T Consensus 383 lGLvEmTRkR~r~sl~~~l~~~Cp~C~G~G~v~s~e~~~~~i~r 426 (489)
T PRK11712 383 LGLVEMTRKRTRESLEHVLCGECPTCHGRGTVKTVETVCYEIMR 426 (489)
T ss_pred CceEEEEecccCCChHHHhcCCCCCCCCCCCcCCHHHHHHHHHH
Confidence 67744444 47777777777899999999998765544444433
No 113
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=62.48 E-value=35 Score=24.76 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=33.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHH
Q 042055 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFK 88 (245)
Q Consensus 46 d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~ 88 (245)
|--.+.|+.|-|+.+||..|-.+.++|..=-..++....+.|.
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~ 46 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFD 46 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHH
Confidence 3445678899999999999999999998777766555555553
No 114
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.00 E-value=16 Score=29.12 Aligned_cols=51 Identities=24% Similarity=0.183 Sum_probs=39.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccch
Q 042055 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDT 100 (245)
Q Consensus 47 ~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 100 (245)
--.||+|++..+.++|.+.|-+|-....+.|..+--...+ |-.|-+-|...
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSK---VfRAkErld~E 111 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSK---VFRAKERLDEE 111 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHH---HHHHHHHHHHH
Confidence 4579999999999999999999999988887765433333 66677766543
No 115
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=61.72 E-value=5.8 Score=40.97 Aligned_cols=32 Identities=13% Similarity=-0.045 Sum_probs=26.2
Q ss_pred CCCCCcccceeEEeeecccccccccccCCCCccc
Q 042055 186 NPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLR 219 (245)
Q Consensus 186 ~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~ 219 (245)
..|.+|+|.++.... ..|.+..+++|+.|||+
T Consensus 731 GRCe~C~GdG~ikIe--M~FLpdVyv~CevC~Gk 762 (935)
T COG0178 731 GRCEACQGDGVIKIE--MHFLPDVYVPCEVCHGK 762 (935)
T ss_pred cCCccccCCceEEEE--eccCCCceeeCCCcCCc
Confidence 378889999877665 45788889999999997
No 116
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=61.11 E-value=4.6 Score=35.58 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=12.4
Q ss_pred cccccCCCCccccee
Q 042055 208 SDYLFQGYPHLRNRM 222 (245)
Q Consensus 208 ~~~~~C~~C~G~G~i 222 (245)
.+.+.||.|+|+|+|
T Consensus 36 ~~~vtCPTCqGtGrI 50 (238)
T PF07092_consen 36 RDSVTCPTCQGTGRI 50 (238)
T ss_pred CCCCcCCCCcCCccC
Confidence 356789999999984
No 117
>PRK14287 chaperone protein DnaJ; Provisional
Probab=56.62 E-value=2.3 Score=39.81 Aligned_cols=47 Identities=4% Similarity=-0.105 Sum_probs=30.2
Q ss_pred HHHHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeec
Q 042055 167 KVIENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFI 224 (245)
Q Consensus 167 ~vce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik 224 (245)
..|..|.|+|...... ....+|..|.|.+..+. ..|..|+|.|.+..
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----------~~C~~C~G~g~v~~ 209 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK-----------QKCATCGGKGKVRK 209 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc-----------ccCCCCCCeeEEee
Confidence 3499999998543221 11235666888865431 23999999998754
No 118
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=50.38 E-value=14 Score=17.84 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcc
Q 042055 86 AFKLISEAYTCLS 98 (245)
Q Consensus 86 ~f~~i~~Ay~vLs 98 (245)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888998774
No 119
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=43.72 E-value=7.4 Score=38.64 Aligned_cols=12 Identities=0% Similarity=-0.310 Sum_probs=6.8
Q ss_pred cCCCCcccceee
Q 042055 212 FQGYPHLRNRMF 223 (245)
Q Consensus 212 ~C~~C~G~G~ii 223 (245)
+|+.|.|+|++.
T Consensus 70 ~c~~c~G~gkv~ 81 (715)
T COG1107 70 TCPECGGTGKVL 81 (715)
T ss_pred ecccCCCceeEE
Confidence 455555555554
No 120
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=40.32 E-value=21 Score=21.59 Aligned_cols=16 Identities=0% Similarity=-0.479 Sum_probs=11.2
Q ss_pred ccCCCCcccceeecCC
Q 042055 211 LFQGYPHLRNRMFIKP 226 (245)
Q Consensus 211 ~~C~~C~G~G~iik~p 226 (245)
..|++|++.|.+.++.
T Consensus 4 ~~C~~C~~~~i~~~~~ 19 (33)
T PF08792_consen 4 KKCSKCGGNGIVNKED 19 (33)
T ss_pred eEcCCCCCCeEEEecC
Confidence 4688888887765554
No 121
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=36.72 E-value=26 Score=34.07 Aligned_cols=62 Identities=10% Similarity=-0.154 Sum_probs=39.5
Q ss_pred HHHHHhccccccccCCCCCCCCcccceeEEee-ecccccccccccCCCCcccceeecCCCcccccCc
Q 042055 169 IENCLSAAASRKESLLVNPSSNLFQSRHRTQK-ETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPR 234 (245)
Q Consensus 169 ce~C~g~g~k~~~~~~~~~~~~C~G~~~~~~q-~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~ 234 (245)
..+|++.+..+-.... .+ -.|...+.++ ..+.+...-...||+|.|+|.++..|..|..+=|
T Consensus 357 l~~~l~~dr~r~~i~~--~s--~~Gl~emtR~R~~~sl~~~~~~~cp~c~G~g~v~~~~~~~~~i~R 419 (487)
T COG1530 357 LRRALKRDRARIQIGR--IS--ELGLLEMTRKRTRESLLEVLSERCPGCKGTGHVRSTESELLHILR 419 (487)
T ss_pred HHHHhccCCccccccc--cc--ccCceEEEEEecCCCCceeeeeECCCceeeEEEecCchhhhhhhc
Confidence 6777776322211111 11 3566444444 5666776666799999999999999988876433
No 122
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=35.06 E-value=9 Score=38.09 Aligned_cols=65 Identities=5% Similarity=0.008 Sum_probs=41.8
Q ss_pred HHHHHHH-HHHHHhccccccccCCCCCCCCccccee--EEeeecccccccccccCCCCcccce-eecCCCccc
Q 042055 162 FKEEAKV-IENCLSAAASRKESLLVNPSSNLFQSRH--RTQKETPVFDPSDYLFQGYPHLRNR-MFIKPQSFW 230 (245)
Q Consensus 162 ~~~e~~v-ce~C~g~g~k~~~~~~~~~~~~C~G~~~--~~~q~~p~f~~~~~~~C~~C~G~G~-iik~p~~~~ 230 (245)
+..+..+ |+.|.|+|. .++..+|..|.|.+- .+..-+-.+.+-..-+|+.|+-.++ ++-=.++|-
T Consensus 48 ~~~~~~~pc~~c~gkG~----V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~~vy~l~~~c~ 116 (715)
T COG1107 48 LFASFEIPCPKCRGKGT----VTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPKIVYVLDNSCT 116 (715)
T ss_pred ccccCCCCCCeecccee----EEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCceeEEeccccc
Confidence 3344556 999999874 444567777988833 3333444455544448999999988 555555553
No 123
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.86 E-value=28 Score=36.72 Aligned_cols=31 Identities=10% Similarity=-0.096 Sum_probs=23.2
Q ss_pred CCCcccceeEEeeecccccccccccCCCCcccc
Q 042055 188 SSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRN 220 (245)
Q Consensus 188 ~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G 220 (245)
|..|.|.+.+... ..|....++.|+.|||+.
T Consensus 739 C~~C~G~G~~~~~--~~f~~~~~~~C~~C~G~R 769 (924)
T TIGR00630 739 CEACQGDGVIKIE--MHFLPDVYVPCEVCKGKR 769 (924)
T ss_pred CCCCccceEEEEE--ccCCCCcccCCCCcCCce
Confidence 5558998776654 446677788999999984
No 124
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=34.61 E-value=45 Score=19.36 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhCC
Q 042055 59 IETIRKRYHKLALQLHP 75 (245)
Q Consensus 59 ~~~Ik~ayr~la~~~HP 75 (245)
.++.+.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47888999999999993
No 125
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=31.95 E-value=37 Score=27.63 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=20.4
Q ss_pred CCCCcccceeEEeeecccccccccccCCCCccccee
Q 042055 187 PSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRM 222 (245)
Q Consensus 187 ~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~i 222 (245)
||..|+||+.+...... .....+.|+.||=.|.|
T Consensus 112 ~C~~C~Gs~k~~~~~~~--~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 112 PCSECNGSCKVFAENAT--AAGGFLRCPECNENGLV 145 (147)
T ss_pred ECCCCCCcceEEeccCc--ccccEEECCCCCccccc
Confidence 66668898555444321 11123469999888865
No 126
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.56 E-value=1.4e+02 Score=30.40 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=61.9
Q ss_pred CCchhHHHHHHHHhhhhhhhhcccccccCCCCCCCCcccCcccccccCC---------CCCHHHHHHHHHH---HHHHhC
Q 042055 7 EDSDMKSKLVLEICSISTTAIGCAHRRISPPSPAESHFIDWYRLLGVDE---------EATIETIRKRYHK---LALQLH 74 (245)
Q Consensus 7 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~---------~as~~~Ik~ayr~---la~~~H 74 (245)
-.|=..-|||.+|.++-++++--.-.. -...+|.||-.++ +.+...|...|+. ..+++|
T Consensus 595 GDDLrQDqlV~Qii~lMd~LLkkenlD---------LkLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~ 665 (843)
T KOG0906|consen 595 GDDLRQDQLVLQIIRLMDRLLKKENLD---------LKLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDR 665 (843)
T ss_pred CcchhHHHHHHHHHHHHHHHhcccccc---------ccceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhC
Confidence 345556799999999999988743322 1246899987664 4688999999976 567889
Q ss_pred CCCCC----CchHHHHHHHHHHHHHhcc
Q 042055 75 PDKNK----HRKAEIAFKLISEAYTCLS 98 (245)
Q Consensus 75 PDk~~----~~~a~~~f~~i~~Ay~vLs 98 (245)
||.|. .+..-+.|..--..|.|+.
T Consensus 666 p~e~ap~gi~~~v~dnfVkScaGYsVit 693 (843)
T KOG0906|consen 666 PDENAPFGISPEVMDNFVKSCAGYSVIT 693 (843)
T ss_pred CCcCCCCCCChhHHHHHHHhhccceeee
Confidence 99965 5666777888888888765
No 127
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=29.50 E-value=1.6e+02 Score=19.08 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
.+.++...+.-||+.+ ..+..+.|...|..|++.++....|..
T Consensus 12 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGLS----VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666777888843 556788899999999987776666654
No 128
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=28.58 E-value=40 Score=38.07 Aligned_cols=30 Identities=7% Similarity=-0.260 Sum_probs=18.6
Q ss_pred CCCcccceeEEeeecccccccccccCCCCccc
Q 042055 188 SSNLFQSRHRTQKETPVFDPSDYLFQGYPHLR 219 (245)
Q Consensus 188 ~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~ 219 (245)
|..|.|.+..... ..|.+..+++|+.|+|+
T Consensus 1610 C~~C~G~G~i~i~--m~fl~dv~~~C~~C~G~ 1639 (1809)
T PRK00635 1610 CSDCWGLGYQWID--RAFYALEKRPCPTCSGF 1639 (1809)
T ss_pred CCCCccCceEEEe--cccCCCcccCCCCCCCc
Confidence 4447666554433 34666667777777776
No 129
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.73 E-value=46 Score=30.03 Aligned_cols=35 Identities=17% Similarity=-0.126 Sum_probs=21.6
Q ss_pred CCCCCcccceeEEeeecccccccccccCCCCcccceee
Q 042055 186 NPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMF 223 (245)
Q Consensus 186 ~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~ii 223 (245)
=||..|+||.-+..+..+... .+.|..|+=.|.|-
T Consensus 241 lpC~~C~GS~kv~~~~~~~~~---~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 241 LPCSNCHGSCKVHEEEEDDGG---VLRCLECNENGLVR 275 (281)
T ss_pred EecCCCCCceeeeeeccCCCc---EEECcccCCCCcee
Confidence 367778888666654222222 23588888888763
No 130
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=27.72 E-value=2.1e+02 Score=19.67 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 64 KRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 64 ~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
+..|.....-||+.. ..+..+.|.+.|..|++.++...+|..
T Consensus 14 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLKE----NRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445566667788853 457788899999999998887766654
No 131
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=27.59 E-value=45 Score=35.28 Aligned_cols=31 Identities=10% Similarity=-0.082 Sum_probs=22.7
Q ss_pred CCCcccceeEEeeecccccccccccCCCCcccc
Q 042055 188 SSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRN 220 (245)
Q Consensus 188 ~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G 220 (245)
|..|.|.+.+...+ .|....++.|+.|+|+.
T Consensus 741 C~~C~G~G~~~~~~--~f~~~~~~~C~~C~G~R 771 (943)
T PRK00349 741 CEACQGDGVIKIEM--HFLPDVYVPCDVCKGKR 771 (943)
T ss_pred CCcccccceEEEEe--ccCCCccccCccccCcc
Confidence 55588887666553 45666778999999984
No 132
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=25.92 E-value=2e+02 Score=18.86 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 66 YHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 66 yr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
.|...+.-||+. ...+..+.|.+.|..|++.++....+..
T Consensus 15 ~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556678874 3567889999999999987776666654
No 133
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=23.87 E-value=2.6e+02 Score=19.43 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++...++..
T Consensus 13 ~~~~r~~~~~~~p~~~----~~eisk~~g~~Wk~ls~eeK~~y~~~A 55 (77)
T cd01389 13 RQDKHAQLKTENPGLT----NNEISRIIGRMWRSESPEVKAYYKELA 55 (77)
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4566777788899863 457788899999999987776655543
No 134
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=23.78 E-value=2.3e+02 Score=18.80 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
.+.++...+.-||+.. ..+..+.|.+.|.-|++.++....+..
T Consensus 12 ~~~~~~~~k~~~p~~~----~~~i~~~~~~~W~~l~~~eK~~y~~~a 54 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS----NKEISKILAQMWKNLSEEEKAPYKEEA 54 (69)
T ss_dssp HHHHHHHHHHHSTTST----HHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc----cccchhhHHHHHhcCCHHHHHHHHHHH
Confidence 3445555666788876 567788999999999877666655543
No 135
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=21.17 E-value=1.5e+02 Score=27.57 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 64 KRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 64 ~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
+..|+...+-.||.+ ..|+.|.|-.-|..|++.+||-.+|.
T Consensus 75 q~~RRkma~qnP~mH----NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMH----NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHHhCcchh----hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 455666666668875 46889999999999999999999996
No 136
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=21.09 E-value=1.7e+02 Score=19.74 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=20.3
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 042055 46 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKN 78 (245)
Q Consensus 46 d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~ 78 (245)
-||+||.++.- .++=|..|-+ .++-||+..
T Consensus 12 AFY~vl~~~nL--teeQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 12 AFYEVLHMPNL--TEEQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHCSTTS---HHHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHcCCCc--CHHHHHhHHH-HHhhChHHH
Confidence 48999998762 3455777766 577888864
Done!