Query 042055
Match_columns 245
No_of_seqs 260 out of 1699
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 23:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctr_A DNAJ homolog subfamily 99.9 1.8E-22 6.3E-27 149.9 8.9 73 43-115 5-77 (88)
2 1hdj_A Human HSP40, HDJ-1; mol 99.9 2E-22 6.8E-27 145.9 7.9 70 45-114 3-72 (77)
3 2ctp_A DNAJ homolog subfamily 99.9 2.9E-22 9.8E-27 145.4 6.7 69 43-111 5-73 (78)
4 2ej7_A HCG3 gene; HCG3 protein 99.9 5.2E-22 1.8E-26 145.3 6.9 72 41-112 5-78 (82)
5 2dn9_A DNAJ homolog subfamily 99.9 6.6E-22 2.3E-26 143.8 7.3 69 43-111 5-74 (79)
6 2dmx_A DNAJ homolog subfamily 99.9 9E-22 3.1E-26 147.2 8.2 74 41-114 5-80 (92)
7 2cug_A Mkiaa0962 protein; DNAJ 99.9 9.6E-22 3.3E-26 146.0 8.1 70 42-111 14-83 (88)
8 2yua_A Williams-beuren syndrom 99.8 2.1E-21 7.2E-26 147.2 8.7 71 41-111 13-84 (99)
9 2lgw_A DNAJ homolog subfamily 99.8 1.2E-21 4.2E-26 148.7 7.4 72 44-115 1-74 (99)
10 2ctq_A DNAJ homolog subfamily 99.8 2E-21 7E-26 150.5 8.4 73 42-114 17-90 (112)
11 1wjz_A 1700030A21RIK protein; 99.8 1.7E-21 5.8E-26 146.0 5.8 71 41-111 12-89 (94)
12 2och_A Hypothetical protein DN 99.8 4E-21 1.4E-25 137.7 6.7 66 44-111 7-72 (73)
13 2ctw_A DNAJ homolog subfamily 99.8 8.4E-21 2.9E-25 146.4 8.6 74 41-114 13-87 (109)
14 2o37_A Protein SIS1; HSP40, J- 99.8 6.3E-21 2.1E-25 142.7 7.2 70 44-115 7-76 (92)
15 1bq0_A DNAJ, HSP40; chaperone, 99.8 4.4E-21 1.5E-25 146.4 3.5 70 45-114 3-73 (103)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 3.8E-20 1.3E-24 142.5 6.2 69 43-111 13-86 (109)
17 2ys8_A RAB-related GTP-binding 99.8 5.2E-20 1.8E-24 137.3 4.9 60 45-104 27-86 (90)
18 2l6l_A DNAJ homolog subfamily 99.8 1.3E-19 4.3E-24 147.8 7.5 72 41-112 6-84 (155)
19 3apq_A DNAJ homolog subfamily 99.8 1.6E-19 5.6E-24 152.2 7.6 71 44-114 1-72 (210)
20 3hho_A CO-chaperone protein HS 99.8 7.4E-19 2.5E-23 146.1 6.8 68 44-111 3-78 (174)
21 1iur_A KIAA0730 protein; DNAJ 99.7 1.1E-18 3.7E-23 129.7 4.2 66 38-103 9-76 (88)
22 1fpo_A HSC20, chaperone protei 99.7 2E-18 6.8E-23 143.1 5.9 67 45-111 1-75 (171)
23 3lz8_A Putative chaperone DNAJ 99.7 3.1E-19 1.1E-23 162.0 0.0 68 43-110 26-93 (329)
24 3bvo_A CO-chaperone protein HS 99.7 6E-18 2.1E-22 144.2 7.5 68 44-111 42-117 (207)
25 1gh6_A Large T antigen; tumor 99.7 3.9E-19 1.3E-23 138.2 -1.8 63 44-109 7-71 (114)
26 2pf4_E Small T antigen; PP2A, 99.7 9E-19 3.1E-23 145.2 -0.4 65 44-111 10-76 (174)
27 1faf_A Large T antigen; J doma 99.7 5.4E-18 1.8E-22 123.4 3.7 60 44-106 10-71 (79)
28 1n4c_A Auxilin; four helix bun 99.7 4.5E-18 1.5E-22 141.9 3.1 65 42-106 114-182 (182)
29 3uo3_A J-type CO-chaperone JAC 99.7 9.7E-18 3.3E-22 140.2 4.6 68 41-110 7-81 (181)
30 2qwo_B Putative tyrosine-prote 99.7 2E-17 7E-22 123.6 3.6 55 45-99 33-91 (92)
31 3ag7_A Putative uncharacterize 99.7 1.7E-17 5.8E-22 127.3 2.8 59 42-101 38-104 (106)
32 2guz_A Mitochondrial import in 99.6 6.5E-17 2.2E-21 115.3 2.2 57 44-103 13-70 (71)
33 3apo_A DNAJ homolog subfamily 99.6 4.6E-17 1.6E-21 161.3 1.3 76 40-115 16-92 (780)
34 2y4t_A DNAJ homolog subfamily 99.1 3.8E-11 1.3E-15 108.0 4.9 64 45-108 382-449 (450)
35 2guz_B Mitochondrial import in 98.9 1.3E-09 4.6E-14 76.0 4.8 52 46-100 5-59 (65)
36 1nlt_A Protein YDJ1, mitochond 98.1 1.4E-06 4.7E-11 75.8 3.0 67 160-230 31-100 (248)
37 2ctt_A DNAJ homolog subfamily 97.9 2.4E-06 8.1E-11 64.5 1.6 54 169-227 31-84 (104)
38 1exk_A DNAJ protein; extended 97.8 9.4E-06 3.2E-10 57.9 2.4 53 169-226 14-66 (79)
39 3lcz_A YCZA, inhibitor of trap 92.0 0.029 9.8E-07 37.0 0.0 14 211-224 10-23 (53)
40 2pzi_A Probable serine/threoni 90.8 0.15 5.1E-06 49.3 3.7 45 45-96 629-675 (681)
41 2bx9_A Anti-trap, AT, tryptoph 90.6 0.097 3.3E-06 34.4 1.5 27 187-224 11-37 (53)
42 1nlt_A Protein YDJ1, mitochond 84.5 0.077 2.6E-06 45.6 -2.5 57 169-234 57-120 (248)
43 3lcz_A YCZA, inhibitor of trap 82.3 0.41 1.4E-05 31.3 1.0 28 187-225 11-38 (53)
44 3pmq_A Decaheme cytochrome C M 78.0 0.98 3.3E-05 44.2 2.4 61 166-228 190-264 (669)
45 2bx9_A Anti-trap, AT, tryptoph 77.8 0.6 2E-05 30.5 0.6 15 210-224 9-23 (53)
46 2ctt_A DNAJ homolog subfamily 74.6 0.49 1.7E-05 34.8 -0.6 48 169-227 48-98 (104)
47 2bx2_L Ribonuclease E, RNAse E 59.8 1 3.5E-05 42.7 -1.8 44 192-235 389-433 (517)
48 4a3n_A Transcription factor SO 35.3 90 0.0031 20.1 5.8 42 63-108 14-55 (71)
49 2d7l_A WD repeat and HMG-box D 33.4 82 0.0028 21.6 5.2 44 63-109 17-60 (81)
50 2cqn_A Formin-binding protein 30.4 1.3E+02 0.0045 20.6 6.5 55 56-111 5-63 (77)
51 2eqz_A High mobility group pro 28.8 1.3E+02 0.0044 20.4 5.6 43 64-108 28-70 (86)
52 2crj_A SWI/SNF-related matrix- 28.1 1.5E+02 0.005 20.5 5.9 41 64-108 20-60 (92)
53 3f27_D Transcription factor SO 27.6 1.4E+02 0.0048 19.9 6.0 42 63-108 18-59 (83)
54 1wgf_A Upstream binding factor 27.5 1.3E+02 0.0043 20.8 5.4 43 63-109 32-74 (90)
55 1i11_A Transcription factor SO 27.0 1.3E+02 0.0043 20.1 5.2 43 63-109 16-58 (81)
56 2cs1_A PMS1 protein homolog 1; 26.5 1.5E+02 0.005 20.5 5.6 42 63-108 19-60 (92)
57 1ckt_A High mobility group 1 p 26.3 1.3E+02 0.0046 19.3 5.2 42 65-108 15-56 (71)
58 1qqr_A Streptokinase domain B; 26.3 35 0.0012 26.4 2.2 31 47-77 34-64 (138)
59 1uzc_A Hypothetical protein FL 26.2 1.3E+02 0.0044 20.3 5.0 54 56-111 11-67 (71)
60 2b7e_A PRE-mRNA processing pro 24.5 1.5E+02 0.0053 19.4 5.2 49 60-110 3-56 (59)
61 1gt0_D Transcription factor SO 23.7 1.6E+02 0.0055 19.5 5.2 41 64-108 15-55 (80)
62 2e6o_A HMG box-containing prot 23.6 1.8E+02 0.006 19.8 5.6 42 63-108 29-70 (87)
63 2co9_A Thymus high mobility gr 22.0 1.8E+02 0.0061 20.5 5.4 42 63-108 29-70 (102)
64 4euw_A Transcription factor SO 21.6 1.9E+02 0.0066 20.5 5.6 42 63-108 41-82 (106)
65 1j46_A SRY, sex-determining re 21.0 2E+02 0.0068 19.4 5.5 42 63-108 16-57 (85)
66 2lef_A LEF-1 HMG, protein (lym 20.9 2E+02 0.0068 19.4 5.6 42 63-108 14-55 (86)
67 1hme_A High mobility group pro 20.6 1.9E+02 0.0064 18.9 5.7 41 64-108 19-59 (77)
68 1xou_B Z5138 gene product; coi 20.4 1.3E+02 0.0043 20.9 3.9 29 80-111 48-76 (95)
No 1
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=149.88 Aligned_cols=73 Identities=40% Similarity=0.661 Sum_probs=68.7
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhc
Q 042055 43 HFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFC 115 (245)
Q Consensus 43 ~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~ 115 (245)
...|||+||||+++|+.++||+|||+|++++|||+++.+.+++.|+.|++||++|+||.+|..||..+...+.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT 77 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 4579999999999999999999999999999999999888999999999999999999999999998877664
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.87 E-value=2e-22 Score=145.90 Aligned_cols=70 Identities=43% Similarity=0.626 Sum_probs=66.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
.|||+||||+++|+.++||+|||+|++++|||+++.+.+++.|+.|++||++|+||.+|+.||..+..++
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 72 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence 5999999999999999999999999999999999988999999999999999999999999999876554
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-22 Score=145.43 Aligned_cols=69 Identities=41% Similarity=0.623 Sum_probs=65.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 43 HFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 43 ~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
...|||+||||+++|+.++||+|||+|++++|||+++.+.+.+.|+.|++||++|+||.+|+.||..+.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 457999999999999999999999999999999999988999999999999999999999999998764
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.2e-22 Score=145.28 Aligned_cols=72 Identities=43% Similarity=0.661 Sum_probs=65.5
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHhccchHHHHHHHHHhhh
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR--KAEIAFKLISEAYTCLSDTAKRRAFNLERWK 112 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 112 (245)
.+...|||+||||+++++.++||+|||+|++++|||+++.. .+++.|+.|++||++|+||.+|+.||..+..
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 34568999999999999999999999999999999999853 6788999999999999999999999987643
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=6.6e-22 Score=143.76 Aligned_cols=69 Identities=39% Similarity=0.606 Sum_probs=64.7
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 43 HFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 43 ~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
...|||+||||+++++.++||+|||+|++++|||+++ .+.+++.|+.|++||++|+||.+|..||..+.
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 4569999999999999999999999999999999998 57889999999999999999999999998753
No 6
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9e-22 Score=147.19 Aligned_cols=74 Identities=45% Similarity=0.718 Sum_probs=67.0
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH--RKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
.+.+.|||+||||+++++.++||+|||+|++++|||+++. +.+++.|++|++||++|+||.+|+.||..+...+
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (92)
T 2dmx_A 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW 80 (92)
T ss_dssp CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 3456899999999999999999999999999999999984 3678999999999999999999999999875544
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=9.6e-22 Score=145.98 Aligned_cols=70 Identities=43% Similarity=0.548 Sum_probs=66.1
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 42 SHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 42 ~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
....|||+||||+++|+.++||+|||+|++++|||+++.+.+++.|++|++||++|+||.+|..||..+.
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 3457999999999999999999999999999999999988999999999999999999999999998764
No 8
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=147.24 Aligned_cols=71 Identities=31% Similarity=0.453 Sum_probs=65.9
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
.....|||+||||+++|+.++||+|||+|++++|||+++ .+.+++.|++|++||+||+||.+|+.||..+.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 455679999999999999999999999999999999997 67889999999999999999999999998654
No 9
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=148.70 Aligned_cols=72 Identities=38% Similarity=0.586 Sum_probs=64.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhc
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH--RKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFC 115 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~ 115 (245)
+.|||+||||+++|+.++||+|||+|++++|||+++. ..+++.|+.|++||++|+||.+|+.||..+..++.
T Consensus 1 M~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 4699999999999999999999999999999999985 35789999999999999999999999998866553
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=150.50 Aligned_cols=73 Identities=30% Similarity=0.476 Sum_probs=67.9
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 42 SHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 42 ~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
....|||+||||+++|+.++||+|||+|++++|||+++ ++.+++.|++|++||++|+||.+|+.||..+..++
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 44579999999999999999999999999999999998 68899999999999999999999999999876554
No 11
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.84 E-value=1.7e-21 Score=146.02 Aligned_cols=71 Identities=30% Similarity=0.622 Sum_probs=64.9
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------chHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH-------RKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~-------~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
.....|||+||||+++|+.++||+|||+|++++|||+++. +.+++.|+.|++||++|+||.+|+.||..+.
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 3456799999999999999999999999999999999873 5678999999999999999999999998764
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.83 E-value=4e-21 Score=137.68 Aligned_cols=66 Identities=39% Similarity=0.641 Sum_probs=60.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..|||+||||+++++.++||+||++|++++|||+++. +.+.|+.|++||++|+||.+|+.||..+.
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 4699999999999999999999999999999999964 36899999999999999999999998653
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=8.4e-21 Score=146.38 Aligned_cols=74 Identities=36% Similarity=0.518 Sum_probs=67.7
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
.....|||+||||+++|+.++||+|||+|++++|||+++ .+.+++.|+.|++||++|+||.+|+.||..+..++
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 445579999999999999999999999999999999998 57789999999999999999999999999876544
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6.3e-21 Score=142.74 Aligned_cols=70 Identities=36% Similarity=0.490 Sum_probs=64.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhc
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFC 115 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~ 115 (245)
..|||+||||+++++.++||+|||+|++++|||+++. ..+.|++|++||++|+||.+|+.||..+.....
T Consensus 7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 76 (92)
T 2o37_A 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLEAAR 76 (92)
T ss_dssp CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence 3699999999999999999999999999999999953 357999999999999999999999998876654
No 15
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.81 E-value=4.4e-21 Score=146.40 Aligned_cols=70 Identities=43% Similarity=0.741 Sum_probs=65.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
.|||+||||+++|+.++||+|||+|++++|||+++ .+.++++|++|++||++|+||.+|+.||..+...+
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF 73 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence 59999999999999999999999999999999998 57889999999999999999999999999876654
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.80 E-value=3.8e-20 Score=142.53 Aligned_cols=69 Identities=29% Similarity=0.450 Sum_probs=64.2
Q ss_pred cccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 43 HFIDWYRLLGVDEEA-TIETIRKRYHKLALQLHPDKNKH----RKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 43 ~~~d~Y~iLgv~~~a-s~~~Ik~ayr~la~~~HPDk~~~----~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
...|||+||||+++| +.++||+|||+|++++|||+++. +.+++.|+.|++||++|+||.+|+.||..+.
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 357999999999999 99999999999999999999975 6688999999999999999999999999763
No 17
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-20 Score=137.28 Aligned_cols=60 Identities=38% Similarity=0.499 Sum_probs=58.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHH
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRR 104 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~ 104 (245)
.|||+||||+++|+.++||+|||+|++++|||+++.+.++++|++|++||++|+||.+|+
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 599999999999999999999999999999999999899999999999999999998875
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=147.79 Aligned_cols=72 Identities=32% Similarity=0.641 Sum_probs=65.0
Q ss_pred CCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHhccchHHHHHHHHHhhh
Q 042055 41 ESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR-------KAEIAFKLISEAYTCLSDTAKRRAFNLERWK 112 (245)
Q Consensus 41 ~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~-------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 112 (245)
.....|||+||||+++|+.++||+|||+|++++|||+++.. .+.+.|+.|++||++|+||.+|+.||..+..
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~ 84 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE 84 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence 34567999999999999999999999999999999999854 2678999999999999999999999987754
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.78 E-value=1.6e-19 Score=152.24 Aligned_cols=71 Identities=38% Similarity=0.590 Sum_probs=66.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhh
Q 042055 44 FIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKF 114 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~ 114 (245)
+.|||+||||+++|+.++||+|||+|++++|||+++ ++.+.++|+.|++||++|+||.+|+.||..+..+.
T Consensus 1 ~~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 72 (210)
T 3apq_A 1 IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 72 (210)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence 369999999999999999999999999999999996 67899999999999999999999999999876554
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.75 E-value=7.4e-19 Score=146.10 Aligned_cols=68 Identities=21% Similarity=0.362 Sum_probs=61.8
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEEAT--IETIRKRYHKLALQLHPDKNKHRK------AEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as--~~~Ik~ayr~la~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..|||+||||+++++ .++||++||+|++++|||+++... +.+.|+.|++||+||+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 469999999999987 999999999999999999997443 66889999999999999999999999764
No 21
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.73 E-value=1.1e-18 Score=129.72 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=59.1
Q ss_pred CCCCCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhccchHHH
Q 042055 38 SPAESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKH--RKAEIAFKLISEAYTCLSDTAKR 103 (245)
Q Consensus 38 ~~~~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~~R 103 (245)
.+......++|+||||+++|+.++||+|||+|++++|||+++. ..+++.|++|++||++|+|...|
T Consensus 9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 4445667899999999999999999999999999999999985 35889999999999999998666
No 22
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.73 E-value=2e-18 Score=143.15 Aligned_cols=67 Identities=24% Similarity=0.392 Sum_probs=61.1
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 45 IDWYRLLGVDEEA--TIETIRKRYHKLALQLHPDKNKHRK------AEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 45 ~d~Y~iLgv~~~a--s~~~Ik~ayr~la~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
+|||+||||++++ +..+||++||+|++++|||+++... +.+.|+.|++||+||+||.+|+.||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 4899999999998 9999999999999999999998432 45789999999999999999999999764
No 23
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.72 E-value=3.1e-19 Score=161.98 Aligned_cols=68 Identities=34% Similarity=0.618 Sum_probs=0.0
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 042055 43 HFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLER 110 (245)
Q Consensus 43 ~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 110 (245)
...|||+||||+++|+.++||+|||+|+++||||+|+.+.|+++|++|++||++|+||.+|+.||.++
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 34799999999999999999999999999999999998889999999999999999999999999874
No 24
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.72 E-value=6e-18 Score=144.24 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=61.0
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEE--ATIETIRKRYHKLALQLHPDKNKHR------KAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~--as~~~Ik~ayr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..|||+||||+++ ++.++||++||+|++++|||+++.. .+.+.|+.|++||+||+||.+|+.||..+.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 4799999999986 7999999999999999999999742 256789999999999999999999998754
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.70 E-value=3.9e-19 Score=138.17 Aligned_cols=63 Identities=27% Similarity=0.307 Sum_probs=58.7
Q ss_pred ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 44 FIDWYRLLGVDEEATI--ETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as~--~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
..|||+||||+++|+. ++||+|||+|++++|||+++. +++|++|++||+||+||.+|+.||..
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 4699999999999998 999999999999999999875 47899999999999999999999954
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.70 E-value=9e-19 Score=145.22 Aligned_cols=65 Identities=28% Similarity=0.316 Sum_probs=57.4
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 44 FIDWYRLLGVDEEAT--IETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 44 ~~d~Y~iLgv~~~as--~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
..|||+||||+++|+ .++||+|||++|+++|||++++ +++|++|++||++|+||.+|+.||..+.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 469999999999998 6999999999999999999875 3689999999999999999999998764
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.70 E-value=5.4e-18 Score=123.44 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=55.2
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHH
Q 042055 44 FIDWYRLLGVDEE--ATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAF 106 (245)
Q Consensus 44 ~~d~Y~iLgv~~~--as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~Y 106 (245)
..++|+||||+++ ++.++||+|||+|++++|||++++ ++.|++|++||++|+|+.+|..+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHH
Confidence 4689999999999 999999999999999999999854 57899999999999999988863
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.69 E-value=4.5e-18 Score=141.92 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=59.3
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHhccchHHHHHH
Q 042055 42 SHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK----AEIAFKLISEAYTCLSDTAKRRAF 106 (245)
Q Consensus 42 ~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~~R~~Y 106 (245)
+...|||+||||+++|+.++||+|||+|++++||||++... |++.|+.|++||++|+||.+|+.|
T Consensus 114 ~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 114 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 34469999999999999999999999999999999998543 788999999999999999999876
No 29
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.69 E-value=9.7e-18 Score=140.19 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=61.6
Q ss_pred CCcccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 042055 41 ESHFIDWYRLL------GVDE-EATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLER 110 (245)
Q Consensus 41 ~~~~~d~Y~iL------gv~~-~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 110 (245)
.+...|||+|| |+++ +|+.++||+|||+|++++|||+++. +.+.|+.|++||+||+||.+|+.||..+
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 34567999999 4665 8999999999999999999999976 7788999999999999999999999976
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.67 E-value=2e-17 Score=123.63 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=50.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHhccc
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR----KAEIAFKLISEAYTCLSD 99 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsd 99 (245)
.++|++|||+++|+.++||+|||++++++|||||+.. .|+++|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999843 378899999999999975
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.66 E-value=1.7e-17 Score=127.33 Aligned_cols=59 Identities=29% Similarity=0.425 Sum_probs=52.5
Q ss_pred CcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------hHHHHHHHHHHHHHhccchH
Q 042055 42 SHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHR--------KAEIAFKLISEAYTCLSDTA 101 (245)
Q Consensus 42 ~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~--------~a~~~f~~i~~Ay~vLsdp~ 101 (245)
+...|||+|||++. |+.++||+|||++++++||||++.+ .|+++|+.|++||++|+|+.
T Consensus 38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 33479999999996 9999999999999999999998742 36889999999999999985
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.5e-17 Score=115.30 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=51.5
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHH
Q 042055 44 FIDWYRLLGVDE-EATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKR 103 (245)
Q Consensus 44 ~~d~Y~iLgv~~-~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R 103 (245)
..++|+||||++ +++.++||+|||+|++++|||++.+ .+.|++|++||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~---~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC---HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHhhhhhc
Confidence 368999999999 7999999999999999999999743 46999999999999998655
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.62 E-value=4.6e-17 Score=161.32 Aligned_cols=76 Identities=37% Similarity=0.536 Sum_probs=40.7
Q ss_pred CCCcccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhc
Q 042055 40 AESHFIDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNK-HRKAEIAFKLISEAYTCLSDTAKRRAFNLERWKKFC 115 (245)
Q Consensus 40 ~~~~~~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~ 115 (245)
......|||+||||+++|+.++||+|||+|++++|||+++ .+.++++|++|++||++|+||.+|+.||.++..++.
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~ 92 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 92 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence 3455689999999999999999999999999999999996 678899999999999999999999999998766553
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.11 E-value=3.8e-11 Score=108.04 Aligned_cols=64 Identities=42% Similarity=0.612 Sum_probs=55.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 45 IDWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRK----AEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.++|.+||+...++.++|+++|+++++++|||+.+.+. +++.|+.|++||++|+||.+|..||.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 48999999999999999999999999999999998644 78899999999999999999999996
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.3e-09 Score=75.97 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=45.1
Q ss_pred CcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccch
Q 042055 46 DWYRLLGVDEE---ATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDT 100 (245)
Q Consensus 46 d~Y~iLgv~~~---as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 100 (245)
+-|.||||+++ ++.++|+++||+|....|||+..++ ..+..|++|+++|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~---yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF---YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHHHH
Confidence 45889999999 9999999999999999999997654 4556699999999754
No 36
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.08 E-value=1.4e-06 Score=75.78 Aligned_cols=67 Identities=7% Similarity=-0.005 Sum_probs=49.0
Q ss_pred HHHHHHHHH-HHHHHhccccccccCCCCCCCCcccc--eeEEeeecccccccccccCCCCcccceeecCCCccc
Q 042055 160 ERFKEEAKV-IENCLSAAASRKESLLVNPSSNLFQS--RHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFW 230 (245)
Q Consensus 160 ~~~~~e~~v-ce~C~g~g~k~~~~~~~~~~~~C~G~--~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~ 230 (245)
..+...+.+ |..|.|+|++.++ ..+|+. |+|. ..+.++.+| |.++.+.+|+.|+|+|++|...+.|=
T Consensus 31 k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~--C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~i~~~~~C~ 100 (248)
T 1nlt_A 31 AKLALNKQILCKECEGRGGKKGA-VKKCTS--CNGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCK 100 (248)
T ss_dssp EEEEEEEEEECTTTTTCSBSTTT-CCCCTT--SSSSSCEEEEEESSS-EEEEEECSCTTCSSSSSCCCTTSBCS
T ss_pred EEEEeeEEEeCCCCcCccCCCCC-CccCCC--CCCCcEEEEEEecCc-eEEEEEEcCCCCCCcCEEeccCCCCc
Confidence 344444555 9999999998887 354555 7777 344555677 77777889999999999996666664
No 37
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=2.4e-06 Score=64.51 Aligned_cols=54 Identities=17% Similarity=0.015 Sum_probs=41.1
Q ss_pred HHHHHhccccccccCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 169 IENCLSAAASRKESLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 169 ce~C~g~g~k~~~~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
|..|.|+|++++..+.+|+. |+|.+.+.+..++ |. ++..|+.|+|+|++|++|.
T Consensus 31 C~~C~G~G~~~g~~~~~C~~--C~G~G~~~~~~G~-~~--~~~~C~~C~G~G~~i~~~C 84 (104)
T 2ctt_A 31 CERCNGKGNEPGTKVQHCHY--CGGSGMETINTGP-FV--MRSTCRRCGGRGSIIISPC 84 (104)
T ss_dssp CSSSSSSSSCTTCCCEECSS--SSSSCEEEEEETT-EE--EEEECSSSSSSSEECSSCC
T ss_pred CCCCcCCccCCCCCCccCCC--CCCCEEEEEEeCC-EE--EEEECCcCCCcceECCCcC
Confidence 99999999888877665665 9888666555444 32 3568999999999997653
No 38
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.78 E-value=9.4e-06 Score=57.90 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=38.1
Q ss_pred HHHHHhccccccccCCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCC
Q 042055 169 IENCLSAAASRKESLLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKP 226 (245)
Q Consensus 169 ce~C~g~g~k~~~~~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p 226 (245)
|..|.|+|........+|+. |+|.+.++.+. +|.+ .+..|+.|+|+|.+|++|
T Consensus 14 C~~C~G~G~~~~~~~~~C~~--C~G~G~~~~~~--g~~~-~~~~C~~C~G~G~~~~~~ 66 (79)
T 1exk_A 14 CDVCHGSGAKPGTQPQTCPT--CHGSGQVQMRQ--GFFA-VQQTCPHCQGRGTLIKDP 66 (79)
T ss_dssp CGGGTTTSBCSSSCCEECTT--TTTSSEEEEEE--TTEE-EEEECTTTTTSSEECSSB
T ss_pred CCCCcccccCCCccCCCCCC--CcCeEEEEEEc--CCCE-EeeECcCCCCccEECCCc
Confidence 99999999876655554444 99986555443 4443 456899999999998643
No 39
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=92.03 E-value=0.029 Score=37.00 Aligned_cols=14 Identities=7% Similarity=-0.444 Sum_probs=7.6
Q ss_pred ccCCCCcccceeec
Q 042055 211 LFQGYPHLRNRMFI 224 (245)
Q Consensus 211 ~~C~~C~G~G~iik 224 (245)
.+|+.|+|+|++|.
T Consensus 10 ~~C~~C~GsG~~i~ 23 (53)
T 3lcz_A 10 TTCPNCNGSGREEP 23 (53)
T ss_dssp EECTTTTTSCEETT
T ss_pred ccCcCCcccccCCC
Confidence 35555555555554
No 40
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.79 E-value=0.15 Score=49.30 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=36.2
Q ss_pred cCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHh
Q 042055 45 IDWYRLLGVDEEATI--ETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTC 96 (245)
Q Consensus 45 ~d~Y~iLgv~~~as~--~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~v 96 (245)
.|||.|||++.+... .+|+++||++|+..+++ .+++..|..|+.|
T Consensus 629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 359999999776544 67999999999976544 4789999999876
No 41
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=90.61 E-value=0.097 Score=34.41 Aligned_cols=27 Identities=0% Similarity=-0.272 Sum_probs=18.3
Q ss_pred CCCCcccceeEEeeecccccccccccCCCCcccceeec
Q 042055 187 PSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFI 224 (245)
Q Consensus 187 ~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik 224 (245)
+|..|+|++.+. ...|+.|+|+|.++.
T Consensus 11 ~C~~C~GsG~~~-----------~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 11 ACPKCERAGEIE-----------GTPCPACSGKGVILT 37 (53)
T ss_dssp ECTTTTTSSEET-----------TEECTTTTTSSEEEC
T ss_pred cCCCCcceeccC-----------CCCCccCCCCccEEE
Confidence 344487776552 135999999998875
No 42
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=84.47 E-value=0.077 Score=45.59 Aligned_cols=57 Identities=2% Similarity=-0.211 Sum_probs=33.9
Q ss_pred HHHHHhcccccccc-------CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCCcccccCc
Q 042055 169 IENCLSAAASRKES-------LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPR 234 (245)
Q Consensus 169 ce~C~g~g~k~~~~-------~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~ 234 (245)
|..|.|+|...... ....+|..|+|.+..+.... .|+.|+|+|.+-....-=-.||.
T Consensus 57 C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~---------~C~~C~G~g~~~~~~~l~V~Ip~ 120 (248)
T 1nlt_A 57 CTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKD---------RCKSCNGKKVENERKILEVHVEP 120 (248)
T ss_dssp CTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTS---------BCSSSTTSCEEEEEEEEEEEECT
T ss_pred CCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCC---------CCcccCCCceEeeeEEEEEEECC
Confidence 88999987532111 12245666888865543223 49999999987554443344443
No 43
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=82.35 E-value=0.41 Score=31.33 Aligned_cols=28 Identities=7% Similarity=-0.197 Sum_probs=16.9
Q ss_pred CCCCcccceeEEeeecccccccccccCCCCcccceeecC
Q 042055 187 PSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIK 225 (245)
Q Consensus 187 ~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~ 225 (245)
+|..|.|++..+. ..|+.|+|+|.+...
T Consensus 11 ~C~~C~GsG~~i~-----------~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 11 TCPNCNGSGREEP-----------EPCPKCLGKGVILTA 38 (53)
T ss_dssp ECTTTTTSCEETT-----------EECTTTTTSSEEECH
T ss_pred cCcCCcccccCCC-----------CcCCCCCCcEEEEEE
Confidence 4444777754432 238888888876543
No 44
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=77.99 E-value=0.98 Score=44.16 Aligned_cols=61 Identities=13% Similarity=-0.014 Sum_probs=35.8
Q ss_pred HHH-HHHHHhccccccc---cCCCCCCCCcccce-e---------EEeeecccccccccccCCCCcccceeecCCCc
Q 042055 166 AKV-IENCLSAAASRKE---SLLVNPSSNLFQSR-H---------RTQKETPVFDPSDYLFQGYPHLRNRMFIKPQS 228 (245)
Q Consensus 166 ~~v-ce~C~g~g~k~~~---~~~~~~~~~C~G~~-~---------~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~~ 228 (245)
+.. |+.|+|+|++.+. .+. +|..|+|.. . ++.+.-.+..+....-|..||..+.-+...+.
T Consensus 190 ~~~~C~tCHGsGA~~Gt~~~~~~--tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~~la~~~~ 264 (669)
T 3pmq_A 190 SIDTCNSCHSNLAFHGGRYNQVE--TCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNPDLADRQN 264 (669)
T ss_dssp CSHHHHHHHSSCCTTTTTSCSSS--CSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCTTCCSCSC
T ss_pred cCCcCCCCCCCCCcCCccCcCCc--cCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCccccccccc
Confidence 444 9999999988876 444 444588872 1 11111111223334579999998874444443
No 45
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=77.77 E-value=0.6 Score=30.53 Aligned_cols=15 Identities=0% Similarity=-0.438 Sum_probs=13.0
Q ss_pred cccCCCCcccceeec
Q 042055 210 YLFQGYPHLRNRMFI 224 (245)
Q Consensus 210 ~~~C~~C~G~G~iik 224 (245)
...|+.|+|+|.+++
T Consensus 9 ~~~C~~C~GsG~~~~ 23 (53)
T 2bx9_A 9 EVACPKCERAGEIEG 23 (53)
T ss_dssp EEECTTTTTSSEETT
T ss_pred cccCCCCcceeccCC
Confidence 458999999999975
No 46
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.57 E-value=0.49 Score=34.83 Aligned_cols=48 Identities=4% Similarity=-0.162 Sum_probs=31.0
Q ss_pred HHHHHhcccccccc---CCCCCCCCcccceeEEeeecccccccccccCCCCcccceeecCCC
Q 042055 169 IENCLSAAASRKES---LLVNPSSNLFQSRHRTQKETPVFDPSDYLFQGYPHLRNRMFIKPQ 227 (245)
Q Consensus 169 ce~C~g~g~k~~~~---~~~~~~~~C~G~~~~~~q~~p~f~~~~~~~C~~C~G~G~iik~p~ 227 (245)
|..|.|+|...... ....+|..|.|.+..+. ..|+.|+|.|.+..+..
T Consensus 48 C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~-----------~~C~~C~G~G~v~~~k~ 98 (104)
T 2ctt_A 48 CHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII-----------SPCVVCRGAGQAKQKKR 98 (104)
T ss_dssp CSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS-----------SCCSSSSSCSEECCCCS
T ss_pred CCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC-----------CcCCCCCCeeEEEEEEE
Confidence 89999997542211 11235556988865441 24999999999866543
No 47
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=59.83 E-value=1 Score=42.73 Aligned_cols=44 Identities=9% Similarity=-0.109 Sum_probs=32.8
Q ss_pred ccceeEEee-ecccccccccccCCCCcccceeecCCCcccccCcc
Q 042055 192 FQSRHRTQK-ETPVFDPSDYLFQGYPHLRNRMFIKPQSFWYFPRE 235 (245)
Q Consensus 192 ~G~~~~~~q-~~p~f~~~~~~~C~~C~G~G~iik~p~~~~~~~~~ 235 (245)
.|...+.+| ..|.+.......||+|+|+|.+.+....|+.|=|.
T Consensus 389 lGLvEmTRkR~r~sL~e~~~~~Cp~C~G~G~v~s~~~~~~~i~R~ 433 (517)
T 2bx2_L 389 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRL 433 (517)
T ss_dssp TSEEEEEECCCSCCHHHHHCCCCSSSSSSSCCCCHHHHHHHHHHH
T ss_pred CceEEEeecCcCcChhhhhcCcCCCcCCceeECCHHHHHHHHHHH
Confidence 677555444 77878777777899999999988777667666553
No 48
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=35.31 E-value=90 Score=20.13 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4556777777888865 46778899999999998776665554
No 49
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.40 E-value=82 Score=21.62 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
-+.+|...+.-||+.. ...+..+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~---~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS---DEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC---SHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556777778899974 2567889999999999988777665543
No 50
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=30.44 E-value=1.3e+02 Score=20.56 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-ch--HHHHHHHHHHHHHhccc-hHHHHHHHHHhh
Q 042055 56 EATIETIRKRYHKLALQLHPDKNKH-RK--AEIAFKLISEAYTCLSD-TAKRRAFNLERW 111 (245)
Q Consensus 56 ~as~~~Ik~ayr~la~~~HPDk~~~-~~--a~~~f~~i~~Ay~vLsd-p~~R~~YD~~~~ 111 (245)
..-...++.+|+.+.+...|..... .. +...|.... +|..|.+ ..++.+|+.+..
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHH
Confidence 3456778999999988887877653 22 333444433 8999865 678889998754
No 51
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.79 E-value=1.3e+02 Score=20.44 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 64 KRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 64 ~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
+..|...+.-||+... ...+..+.|.+.|..|++.++....+.
T Consensus 28 ~~~r~~~k~~~p~~~~--~~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPV--NFAEFSKKCSERWKTMSGKEKSKFDEM 70 (86)
T ss_dssp HHHHHHHHHHCTTSCC--CHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCC--cHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455556667888642 245778899999999998877665554
No 52
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=28.14 E-value=1.5e+02 Score=20.46 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 64 KRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 64 ~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 20 NERREQIRTRHPDLP----FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHCTTCC----HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666677788864 56778899999999998877665554
No 53
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=27.57 E-value=1.4e+02 Score=19.94 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566777778899865 46778899999999998776665554
No 54
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.48 E-value=1.3e+02 Score=20.78 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 32 ~~~~r~~~k~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS----ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHTHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666677788853 567788999999999988777666654
No 55
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.03 E-value=1.3e+02 Score=20.13 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNLE 109 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~ 109 (245)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++..
T Consensus 16 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~A 58 (81)
T 1i11_A 16 AKDERRKILQAFPDMH----NSNISKILGSRWKAMTNLEKQPYYEEQ 58 (81)
T ss_dssp HHHHHHHHHTTCSSCC----HHHHHHHHHHHHTTSCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 3455666667788754 567788999999999988776666653
No 56
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.47 E-value=1.5e+02 Score=20.49 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS----LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSSC----HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445666677788864 46788899999999998877666554
No 57
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=26.30 E-value=1.3e+02 Score=19.31 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 65 RYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 65 ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
..|...+.-||+... ...+..+.|.+.|..|++.++....+.
T Consensus 15 ~~r~~~~~~~p~~~~--~~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 15 TCREEHKKKHPDASV--NFSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHCTTCCC--CHHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 345555667888642 236778899999999998876665554
No 58
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=26.26 E-value=35 Score=26.41 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=26.8
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 042055 47 WYRLLGVDEEATIETIRKRYHKLALQLHPDK 77 (245)
Q Consensus 47 ~Y~iLgv~~~as~~~Ik~ayr~la~~~HPDk 77 (245)
++..|-|....+.++++++-..+..++||+=
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 3677778888999999999999999999985
No 59
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=26.15 E-value=1.3e+02 Score=20.33 Aligned_cols=54 Identities=26% Similarity=0.333 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHH--HHHHhccc-hHHHHHHHHHhh
Q 042055 56 EATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLIS--EAYTCLSD-TAKRRAFNLERW 111 (245)
Q Consensus 56 ~as~~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i~--~Ay~vLsd-p~~R~~YD~~~~ 111 (245)
.++.++.+.+|+.|....+-+-. -.=+.....|. .-|.+|.+ .+++..|+.+..
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~--~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~ 67 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSN--ASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKV 67 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTT--CCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCC--CCHHHHHHHHccCccccccCCHHHHHHHHHHHHH
Confidence 46899999999999988753332 22122222332 26777876 567778887653
No 60
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.47 E-value=1.5e+02 Score=19.38 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHH---HHHHHhccc-hH-HHHHHHHHh
Q 042055 60 ETIRKRYHKLALQLHPDKNKHRKAEIAFKLI---SEAYTCLSD-TA-KRRAFNLER 110 (245)
Q Consensus 60 ~~Ik~ayr~la~~~HPDk~~~~~a~~~f~~i---~~Ay~vLsd-p~-~R~~YD~~~ 110 (245)
++..++|.+|.+...-|-. -.=+...+.| ..-|.+|.| |. ++..|+.+.
T Consensus 3 eEae~aF~~lL~~~~V~s~--wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST--WSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS--CCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC--CcHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 5678899998887754433 2334555556 458999997 65 778888775
No 61
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=23.69 E-value=1.6e+02 Score=19.48 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 64 KRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 64 ~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH----NSEISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHTTSTTSC----HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445666666788753 46778899999999998777666654
No 62
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=23.65 E-value=1.8e+02 Score=19.78 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~~~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 70 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD----NRAISVILGDRWKKMKNEERRMYTLE 70 (87)
T ss_dssp HHHTHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 3456666677788853 45778889999999998776665554
No 63
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.01 E-value=1.8e+02 Score=20.51 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 70 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT----FGEVSKIVASMWDGLGEEQKQVYKKK 70 (102)
T ss_dssp HHHHHHHHHHHCTTSC----HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3445666667788864 56778899999999998777666554
No 64
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=21.60 E-value=1.9e+02 Score=20.52 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 41 ~~~~r~~~k~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 82 (106)
T 4euw_A 41 AQAARRKLADQYPHLH----NAELSKTLGKLWRLLNESEKRPFVEE 82 (106)
T ss_dssp HHHHHHHHHHHCTTSC----HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566777788889864 45788899999999998877666664
No 65
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=21.00 E-value=2e+02 Score=19.38 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (85)
T 1j46_A 16 SRDQRRKMALENPRMR----NSEISKQLGYQWKMLTEAEKWPFFQE 57 (85)
T ss_dssp HHHHHHHHHHHSTTSC----HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3455666667788864 45778899999999997776665554
No 66
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.87 E-value=2e+02 Score=19.37 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 63 RKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 63 k~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
.+.+|...+.-||+.+ ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (86)
T 2lef_A 14 MKEMRANVVAESTLKE----SAAINQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHHHSSCCC----HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455666677788863 45778899999999997776665554
No 67
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=20.56 E-value=1.9e+02 Score=18.93 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhccchHHHHHHHH
Q 042055 64 KRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFNL 108 (245)
Q Consensus 64 ~ayr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~ 108 (245)
+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 19 SEYRPKIKGEHPGLS----IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHCTTCC----HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445555666788854 56788999999999998776655554
No 68
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=20.36 E-value=1.3e+02 Score=20.93 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHHHhccchHHHHHHHHHhh
Q 042055 80 HRKAEIAFKLISEAYTCLSDTAKRRAFNLERW 111 (245)
Q Consensus 80 ~~~a~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 111 (245)
+|.|.+.+..+.+.|. .-+.|+.||..+.
T Consensus 48 ~pqaae~ln~liegyt---~geerklydsals 76 (95)
T 1xou_B 48 DPQAAEKLNKLIEGYT---YGEERKLYDSALS 76 (95)
T ss_dssp CHHHHHHHHHHHHHHH---HSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhc---chhHHHHHHHHHH
Confidence 4788888888888886 6788999998654
Done!