BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042057
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 20/107 (18%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPI--LLNDGK 67
S DV+ YG++LLE+ T ++ D+ AR+A D V+ ++D + LL + K
Sbjct: 213 SEKTDVFGYGVMLLELITGQRAFDL-----------ARLANDDDVM-LLDWVKGLLKEKK 260
Query: 68 GETRINSRLAC------VNSMVRIGVACSMESPQDRMNITNVVHELQ 108
E ++ L V ++++ + C+ SP +R ++ VV L+
Sbjct: 261 LEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 2 EYGLGSGVSTNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPI 61
EY S DV+ YG++LLE+ T ++ D+ AR+A D V+ ++D +
Sbjct: 213 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDL-----------ARLANDDDVM-LLDWV 260
Query: 62 --LLNDGKGETRINSRLAC------VNSMVRIGVACSMESPQDRMNITNVVHELQ 108
LL + K E ++ L V ++++ + C+ SP +R ++ VV L+
Sbjct: 261 KGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 315
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 6 GSGVSTNGDVYSYGILLLEMETTKKPTD 33
GS S DV+S+GI+L E+ T +KP D
Sbjct: 177 GSNYSEKCDVFSWGIILWEVITRRKPFD 204
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 6 GSGVSTNGDVYSYGILLLEMETTKKPTD 33
GS S DV+S+GI+L E+ T +KP D
Sbjct: 178 GSNYSEKCDVFSWGIILWEVITRRKPFD 205
>pdb|1A5C|A Chain A, Fructose-1,6-Bisphosphate Aldolase From Plasmodium
Falciparum
pdb|1A5C|B Chain B, Fructose-1,6-Bisphosphate Aldolase From Plasmodium
Falciparum
Length = 368
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 13 GDVYSYGILLLEMETTK-KPTDV-MFEGDLNLHRFARMALPDHVVYIVDPILLNDG 66
G ++ +L ++T K KPTD+ + E L R+A + + +V IV+P +L DG
Sbjct: 146 GARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPEILADG 201
>pdb|2EPH|A Chain A, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.7 Angstrom Resolution
pdb|2EPH|B Chain B, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.7 Angstrom Resolution
pdb|2EPH|C Chain C, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.7 Angstrom Resolution
pdb|2EPH|D Chain D, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.7 Angstrom Resolution
pdb|2PC4|A Chain A, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.4 Angstrom Resolution
pdb|2PC4|B Chain B, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.4 Angstrom Resolution
pdb|2PC4|C Chain C, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.4 Angstrom Resolution
pdb|2PC4|D Chain D, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.4 Angstrom Resolution
Length = 369
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 13 GDVYSYGILLLEMETTK-KPTDV-MFEGDLNLHRFARMALPDHVVYIVDPILLNDG 66
G ++ +L ++T K KPTD+ + E L R+A + + +V IV+P +L DG
Sbjct: 147 GARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPEILADG 202
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 25/107 (23%)
Query: 6 GSGVSTNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLND 65
S S DV+SYG+LL E+ T + P F G +D + +
Sbjct: 188 ASMFSKGSDVWSYGVLLWELLTGEVP----FRG-------------------IDGLAVAY 224
Query: 66 GKGETRINSRL--ACVNSMVRIGVACSMESPQDRMNITNVVHELQSV 110
G ++ + C ++ C P R + TN++ +L ++
Sbjct: 225 GVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 195 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 242
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 243 ------------CPEELYQLMRLCWKERPEDR 262
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 193 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 240
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 241 ------------CPEELYQLMRLCWKERPEDR 260
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 197 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 244
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 245 ------------CPEELYQLMRLCWKERPEDR 264
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 189 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 236
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 237 ------------CPEELYQLMRLCWKERPEDR 256
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 193 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 240
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 241 ------------CPEELYQLMRLCWKERPEDR 260
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 187 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 234
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 235 ------------CPEELYQLMRLCWKERPEDR 254
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 192 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 239
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 240 ------------CPEELYQLMRLCWKERPEDR 259
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 187 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 234
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 235 ------------CPEELYQLMRLCWKERPEDR 254
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 188 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 235
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 236 ------------CPEELYQLMRLCWKERPEDR 255
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 187 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 234
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 235 ------------CPEELYQLMRLCWKERPEDR 254
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 196 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 243
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 244 ------------CPEELYQLMRLCWKERPEDR 263
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 183 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 230
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 231 ------------CPEELYQLMRLCWKERPEDR 250
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 187 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 234
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 235 ------------CPEELYQLMRLCWKERPEDR 254
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 27/92 (29%)
Query: 9 VSTNGDVYSYGILLLEMETTKK-PTDVMFEGDL--NLHRFARMALPDHVVYIVDPILLND 65
+ DV+S+GILL E+ T + P M ++ NL R RM PD+
Sbjct: 182 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN------------ 229
Query: 66 GKGETRINSRLACVNSMVRIGVACSMESPQDR 97
C + ++ C E P+DR
Sbjct: 230 ------------CPEELYQLMRLCWKERPEDR 249
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 214 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 265
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 216 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 267
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 207 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 258
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 215 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 266
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 215 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 266
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 213 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 264
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 234 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 285
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 220 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 271
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 215 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 266
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 216 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 267
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 212 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 263
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 274 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 325
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 213 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 264
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 215 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 266
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 233 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 284
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 214 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 265
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 10 STNGDVYSYGILLLEMETTKKP--TDV-MFEGDLNLHRFARMALPDHVVYIVDPI 61
+T DV+S+G+LL E+ T P DV F+ + L + R+ P+ Y DP+
Sbjct: 210 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE---YCPDPL 261
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 13 GDVYSYGILLLEMETTKKPTDVMFEGDLN 41
DVYS+G++L E+ T ++P G+LN
Sbjct: 220 SDVYSFGVILWELATLQQPW-----GNLN 243
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 12 NGDVYSYGILLLEMETTKKPTDVMFEGDLN 41
DVYS+G++L E+ T ++P G+LN
Sbjct: 219 KSDVYSFGVILWELATLQQPW-----GNLN 243
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 2 EYGLGSGVSTNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDH----VVYI 57
EY + ++ DVYS+G++L E+ + + ++ + A A+ H + I
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCAR--SAIVQSLPREMVNLAEWAVESHNNGQLEQI 268
Query: 58 VDPILLNDGKGETRINSRLACVNSMVRIGVACSMESPQDRMNITNVVHELQ 108
VDP L + + E+ + V C S +DR ++ +V+ +L+
Sbjct: 269 VDPNLADKIRPES--------LRKFGDTAVKCLALSSEDRPSMGDVLWKLE 311
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 2 EYGLGSGVSTNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDH----VVYI 57
EY + ++ DVYS+G++L E+ + + ++ + A A+ H + I
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCAR--SAIVQSLPREMVNLAEWAVESHNNGQLEQI 268
Query: 58 VDPILLNDGKGETRINSRLACVNSMVRIGVACSMESPQDRMNITNVVHELQ 108
VDP L + + E+ + V C S +DR ++ +V+ +L+
Sbjct: 269 VDPNLADKIRPES--------LRKFGDTAVKCLALSSEDRPSMGDVLWKLE 311
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 7 SGVSTNGDVYSYGILLLEM 25
S +TN DV+SYG+LL E+
Sbjct: 213 SVYTTNSDVWSYGVLLWEI 231
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 7 SGVSTNGDVYSYGILLLEM 25
S +TN DV+SYG+LL E+
Sbjct: 206 SVYTTNSDVWSYGVLLWEI 224
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 7 SGVSTNGDVYSYGILLLEM 25
S +TN DV+SYG+LL E+
Sbjct: 216 SVYTTNSDVWSYGVLLWEI 234
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVYSYGI+L E+ T + P ++ + D ++++V G+G
Sbjct: 215 SFQSDVYSYGIVLYELMTGELP-------------YSHINNRDQIIFMV-------GRGY 254
Query: 70 TRIN-SRLA--CVNSMVRIGVACSMESPQDRMNITNVVHELQSVKNILLK 116
+ S+L C +M R+ C + ++R ++ ++ +++ L K
Sbjct: 255 ASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 214 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 260
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 261 VRSN----CPKAMKRLMAECLKKKRDER 284
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 207 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 253
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 254 VRSN----CPKAMKRLMAECLKKKRDER 277
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 215 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 261
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 262 VRSN----CPKAMKRLMAECLKKKRDER 285
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 215 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 261
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 262 VRSN----CPKAMKRLMAECLKKKRDER 285
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 192 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 238
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 239 VRSN----CPKAMKRLMAECLKKKRDER 262
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 233
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 234 VRSN----CPKAMKRLMAECLKKKRDER 257
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 189 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 235
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 236 VRSN----CPKAMKRLMAECLKKKRDER 259
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 192 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 238
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 239 VRSN----CPKAMKRLMAECLKKKRDER 262
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 233
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 234 VRSN----CPKAMKRLMAECLKKKRDER 257
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++++V L+ +
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIFMVGRGYLSPDLSK 233
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDR 97
R N C +M R+ C + +R
Sbjct: 234 VRSN----CPKAMKRLMAECLKKKRDER 257
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++ +V L+ +
Sbjct: 203 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIEMVGRGSLSPDLSK 249
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDRMNITNVVHELQSV 110
R N C M R+ C + +R + ++ E++ +
Sbjct: 250 VRSN----CPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++ +V L+ +
Sbjct: 191 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIEMVGRGSLSPDLSK 237
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDRMNITNVVHELQSV 110
R N C M R+ C + +R + ++ E++ +
Sbjct: 238 VRSN----CPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 274
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 10 STNGDVYSYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGE 69
S DVY++GI+L E+ T + P ++ + D ++ +V L+ +
Sbjct: 203 SFQSDVYAFGIVLYELMTGQLP-------------YSNINNRDQIIEMVGRGSLSPDLSK 249
Query: 70 TRINSRLACVNSMVRIGVACSMESPQDRMNITNVVHELQSV 110
R N C M R+ C + +R + ++ E++ +
Sbjct: 250 VRSN----CPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286
>pdb|3EPZ|A Chain A, Structure Of The Replication Foci-Targeting Sequence Of
Human Dna Cytosine Methyltransferase Dnmt1
pdb|3EPZ|B Chain B, Structure Of The Replication Foci-Targeting Sequence Of
Human Dna Cytosine Methyltransferase Dnmt1
Length = 268
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 17 SYGILLLEMETTKKPTDVMFEGDLNLHRFARMALPDHVVYIVDPILLNDGKGETRINSRL 76
+Y L+ ++ETT P+ LNL+RF +L H ++V+ + D G++
Sbjct: 191 TYEDLINKIETTVPPSG------LNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIF 244
Query: 77 --ACVNSMVRI-GVACSMESPQDR 97
C ++++ GV Q R
Sbjct: 245 LTPCXRDLIKLAGVTLGQRRAQAR 268
>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
pdb|3LL6|B Chain B, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
Length = 337
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 94 PQDRMNITNVVHELQSV 110
P++R++I VVH+LQ +
Sbjct: 290 PEERLSIAEVVHQLQEI 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,602,957
Number of Sequences: 62578
Number of extensions: 130836
Number of successful extensions: 699
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 68
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)