BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042059
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B5YAR4|DNAJ_DICT6 Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1
Length = 390
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 99 PVCRNCG---GSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVC 152
P C+ G G+ V CDMC GTG+ + + + + T CP C+G G+++ C C
Sbjct: 160 PTCKGKGTEPGTNPVKCDMCNGTGQIRNMRQTPFGQFVQITTCPKCHGTGQIIINPCHEC 219
Query: 153 LGTG 156
GTG
Sbjct: 220 HGTG 223
>sp|Q7V9C8|DNAJ_PROMM Chaperone protein DnaJ OS=Prochlorococcus marinus (strain MIT 9313)
GN=dnaJ PE=3 SV=1
Length = 378
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 92 ALDGKERPV-------CRNCGGSGAVL------CDMCGGTGKWKALNRKRAKDVYEFTEC 138
A+ G+ER + C C G+GA + C CGG G+ + R + EC
Sbjct: 130 AVFGQEREIKIPHLETCDTCNGTGAKVGSGPTTCSTCGGVGQVRRATRTPFGSFTQVAEC 189
Query: 139 PNCYGRGKLV---CPVCLGTGLPNNKGLLR 165
P+C G G+++ CP C G G+ + LR
Sbjct: 190 PSCEGTGQVIADPCPACAGQGVRQVRKKLR 219
>sp|Q8TQR1|DNAJ_METAC Chaperone protein DnaJ OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=dnaJ PE=3 SV=1
Length = 382
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 101 CRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
C C G+GA C CGGTG+ + T C C+GRG+++ CPV
Sbjct: 144 CSTCSGTGAKPGTSPKRCPTCGGTGQVRTTRSTLGMQFISTTTCSTCHGRGQIIESPCPV 203
Query: 152 CLGTGLPNNK 161
C G G NK
Sbjct: 204 CGGAGRVRNK 213
>sp|Q6A662|DNAJ2_PROAC Chaperone protein DnaJ 2 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=dnaJ2 PE=3 SV=1
Length = 380
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 14/76 (18%)
Query: 91 IALDGKERPVCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYG 143
+ +D + C+ C G+GA +C C G+G ++ A V+E TE CP+C+G
Sbjct: 154 VTMDMVSQAPCQACRGTGARAGTVPRVCSTCQGSG----MHASSAGGVFEMTEPCPDCHG 209
Query: 144 RGKLV---CPVCLGTG 156
RG +V C VC G+G
Sbjct: 210 RGMIVEDPCQVCHGSG 225
>sp|Q9UXR9|DNAJ_METTE Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3
SV=1
Length = 387
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
C NC G+GA C CGGTG+ + T C C G+G+++ CPV
Sbjct: 143 CSNCSGTGARPGTSPKRCPTCGGTGQIRTTRTGLGMQFVSTTTCSTCRGKGQVIESPCPV 202
Query: 152 CLGTGLPNN 160
C GTG N
Sbjct: 203 CSGTGRVRN 211
>sp|Q9RDD7|DNAJ2_STRCO Chaperone protein DnaJ 2 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=dnaJ2 PE=3 SV=1
Length = 378
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
VC C G GA CDMC G G+ + R V CP C G G +V CP
Sbjct: 142 VCNTCNGEGAAPGTSAQTCDMCRGRGEVSQVTRSFLGQVMTSRPCPQCQGFGTVVPTPCP 201
Query: 151 VCLGTG 156
C G G
Sbjct: 202 ECAGDG 207
>sp|Q82BY4|DNAJ2_STRAW Chaperone protein DnaJ 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=dnaJ2 PE=3 SV=1
Length = 378
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
VC C G GA CDMC G G+ + R V CP C G G +V CP
Sbjct: 142 VCTTCSGEGAAPGTSAQTCDMCRGRGEVSQVTRSFLGQVMTSRPCPQCQGFGTVVPTPCP 201
Query: 151 VCLGTG 156
C G G
Sbjct: 202 ECAGDG 207
>sp|Q7NDG8|DNAJ_GLOVI Chaperone protein DnaJ OS=Gloeobacter violaceus (strain PCC 7421)
GN=dnaJ PE=3 SV=1
Length = 383
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 100 VCRNCG---GSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCL 153
CR G GSG + C CGG G+ + R + CPNC G G+++ CP C
Sbjct: 154 TCRGSGSKPGSGPMTCRNCGGQGQIRQARRTPFGLFTQVAACPNCQGTGEVIESPCPTCS 213
Query: 154 GTG 156
G G
Sbjct: 214 GRG 216
>sp|B7KSZ5|DNAJ_METC4 Chaperone protein DnaJ OS=Methylobacterium chloromethanicum (strain
CM4 / NCIMB 13688) GN=dnaJ PE=3 SV=1
Length = 385
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 23/90 (25%)
Query: 85 VSVPEAIALDGKERPVCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTE- 137
+ +P +IA C C G+GA C CGG G+ +A A+ +
Sbjct: 146 IRIPTSIA--------CETCSGTGAKAGSKPRTCSTCGGYGRVRA-----AQGFFAIERT 192
Query: 138 CPNCYGRGKLV---CPVCLGTGLPNNKGLL 164
CPNC+GRG++V C C G G N + L
Sbjct: 193 CPNCHGRGEVVDDPCTACSGAGRVNRERTL 222
>sp|B3EE31|DNAJ_CHLL2 Chaperone protein DnaJ OS=Chlorobium limicola (strain DSM 245 /
NBRC 103803) GN=dnaJ PE=3 SV=1
Length = 401
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 96 KERPVCRNCGGSGAVL-----CDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV-- 148
K++ VC+ C GSG+ C C G+G+ + ++ T CP C G G++V
Sbjct: 164 KKQIVCKECNGSGSKTGATEPCQTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKD 223
Query: 149 -CPVCLGTGL 157
C C G G+
Sbjct: 224 RCTACYGEGI 233
>sp|Q7VEJ6|DNAJ_PROMA Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=dnaJ PE=3 SV=1
Length = 378
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 100 VCRNCG---GSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCL 153
VCR G G+G C CGG G+ + R + ++CP C G G+++ C C
Sbjct: 147 VCRGTGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSDCPTCSGSGQVISDSCQSCG 206
Query: 154 GTGLPNNKGLLR 165
G G+ + LR
Sbjct: 207 GQGVKQVRKKLR 218
>sp|A9W6R8|DNAJ_METEP Chaperone protein DnaJ OS=Methylobacterium extorquens (strain PA1)
GN=dnaJ PE=3 SV=1
Length = 385
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 23/90 (25%)
Query: 85 VSVPEAIALDGKERPVCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTE- 137
+ +P +IA C C G+GA C CGG G+ +A A+ +
Sbjct: 146 IRIPTSIA--------CETCSGTGAKAGSKPRTCSTCGGYGRVRA-----AQGFFAIERT 192
Query: 138 CPNCYGRGKLV---CPVCLGTGLPNNKGLL 164
CPNC+GRG++V C C G G N + L
Sbjct: 193 CPNCHGRGEVVDDPCTACSGAGRVNRERTL 222
>sp|B1ZGR2|DNAJ_METPB Chaperone protein DnaJ OS=Methylobacterium populi (strain ATCC
BAA-705 / NCIMB 13946 / BJ001) GN=dnaJ PE=3 SV=1
Length = 383
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 23/97 (23%)
Query: 78 ISNSGSLVSVPEAIALDGKERPVCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKD 131
S + +P +IA C C G+GA C CGG G+ +A A+
Sbjct: 137 FSGKTETIRIPTSIA--------CEACSGTGAKAGSKPRTCSTCGGYGRVRA-----AQG 183
Query: 132 VYEFTE-CPNCYGRGKLV---CPVCLGTGLPNNKGLL 164
+ CPNC+GRG++V C C G G N + L
Sbjct: 184 FFAIERTCPNCHGRGEVVDDPCTACSGAGRVNRERTL 220
>sp|A4SFR5|DNAJ_PROVI Chaperone protein DnaJ OS=Prosthecochloris vibrioformis (strain DSM
265) GN=dnaJ PE=3 SV=1
Length = 396
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 96 KERPVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV-- 148
K++ C+ C GSG+ C C GTG+ + ++ CP C G G++V
Sbjct: 160 KKQVPCKECNGSGSKTGATETCPTCHGTGEVRQASKTMFGQFVNIAACPTCGGEGRIVKD 219
Query: 149 -CPVCLGTGL 157
CP C G G+
Sbjct: 220 RCPACYGEGI 229
>sp|O52164|DNAJ2_STRAL Chaperone protein DnaJ 2 OS=Streptomyces albus G GN=dnaJ2 PE=3 SV=1
Length = 379
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
VC C G GA CDMC G G+ + R V CP C G +V CP
Sbjct: 142 VCNTCNGEGAAPGTSAQTCDMCRGRGEVSQVTRSFLGQVMTSRPCPQCQGFATVVPTPCP 201
Query: 151 VCLGTG-LPNNKGL 163
C G G +P+ + L
Sbjct: 202 ECAGDGRVPSRRTL 215
>sp|Q6L0S6|DNAJ_PICTO Chaperone protein DnaJ OS=Picrophilus torridus (strain ATCC 700027
/ DSM 9790 / JCM 10055 / NBRC 100828) GN=dnaJ PE=3 SV=1
Length = 357
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 100 VCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL---VCPV 151
+C +C G+GA + C C G+G+ + + + TEC C+GRGK+ C V
Sbjct: 144 MCEHCSGTGAENKVLITCPTCHGSGQERITRGQGFFRMVTVTECRTCHGRGKIPQKPCTV 203
Query: 152 CLGTG 156
C GTG
Sbjct: 204 CHGTG 208
>sp|Q7UM96|DNAJ_RHOBA Chaperone protein DnaJ OS=Rhodopirellula baltica (strain SH1)
GN=dnaJ PE=3 SV=1
Length = 391
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 96 KERPVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV- 148
+ R C C GSGA V C MCGG G+ + A + T CP C G GK +
Sbjct: 145 RRRVSCDTCDGSGAAAGSEPVTCTMCGGQGQVI----QSAGILRVQTTCPTCKGAGKQIG 200
Query: 149 --CPVCLGTGLPNNKGLL 164
C C GTG N K +
Sbjct: 201 EPCGKCRGTGTQNEKAEM 218
>sp|A6QBG7|DNAJ_SULNB Chaperone protein DnaJ OS=Sulfurovum sp. (strain NBC37-1) GN=dnaJ
PE=3 SV=1
Length = 377
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Query: 101 CRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---CPV 151
C CGG+GA CD CGG G+ L R+ +F + CP C+G G+ + CP
Sbjct: 151 CEECGGTGAKDGKMETCDYCGGQGQ--VLMRQGP---MQFAQTCPKCHGEGRKIAQKCPS 205
Query: 152 CLGTGL 157
C G G
Sbjct: 206 CQGKGY 211
>sp|C4Z1J3|DNAJ_EUBE2 Chaperone protein DnaJ OS=Eubacterium eligens (strain ATCC 27750 /
VPI C15-48) GN=dnaJ PE=3 SV=1
Length = 375
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
C +C G+GA C CGG G+ + V CP+C+G GK++ CP
Sbjct: 151 CSSCHGTGAKPGTSPETCSKCGGRGQVTFTQQSFLGMVRSQQPCPDCHGTGKIIKEKCPD 210
Query: 152 CLGTGLPNNK 161
C GTG ++K
Sbjct: 211 CYGTGYISSK 220
>sp|Q8KCD8|DNAJ_CHLTE Chaperone protein DnaJ OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=dnaJ PE=3 SV=1
Length = 403
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 101 CRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVC 152
CR C G+G+ +C C G+G+ + + + CP C G G++V CP C
Sbjct: 172 CRECNGTGSKSGKTEICPTCHGSGEVRQATKTMFGQFMNISVCPTCGGEGRVVKDRCPSC 231
Query: 153 LGTGLPNNKGLLR 165
G G+ + ++
Sbjct: 232 YGEGIKQGEATVK 244
>sp|Q98DD2|DNAJ_RHILO Chaperone protein DnaJ OS=Rhizobium loti (strain MAFF303099)
GN=dnaJ PE=3 SV=1
Length = 376
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 23/82 (28%)
Query: 85 VSVPEAIALDGKERPVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTE- 137
+ VP +I+ C C GSGA V C MC G GK +A + +
Sbjct: 138 IRVPASIS--------CTECSGSGAKPGTQPVTCSMCHGHGKVRA-----TQGFFSIERT 184
Query: 138 CPNCYGRGKLV---CPVCLGTG 156
CP C GRG+ + CP C G G
Sbjct: 185 CPQCQGRGQTIKDPCPKCAGQG 206
>sp|P0CW06|DNAJ_METMZ Chaperone protein DnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1
Length = 389
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 101 CRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
C C G+GA C CGGTG+ + T C C+GRG++V CP
Sbjct: 144 CSTCSGTGAKPGTSPKRCPNCGGTGQVRTTRSTLGMQFVSTTTCSACHGRGQVVESPCPT 203
Query: 152 CLGTG 156
C G G
Sbjct: 204 CSGAG 208
>sp|P0CW07|DNAJ_METMA Chaperone protein DnaJ OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=dnaJ
PE=3 SV=1
Length = 389
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 101 CRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
C C G+GA C CGGTG+ + T C C+GRG++V CP
Sbjct: 144 CSTCSGTGAKPGTSPKRCPNCGGTGQVRTTRSTLGMQFVSTTTCSACHGRGQVVESPCPT 203
Query: 152 CLGTG 156
C G G
Sbjct: 204 CSGAG 208
>sp|Q21CI1|DNAJ_RHOPB Chaperone protein DnaJ OS=Rhodopseudomonas palustris (strain
BisB18) GN=dnaJ PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---C 149
C +C G+GA C MCGG G+ + +A+ + CP C GRG+ + C
Sbjct: 147 TCESCSGTGAKAGTKPKTCSMCGGAGRVR-----QAQGFFTLERTCPGCQGRGQTIEDPC 201
Query: 150 PVCLGTG 156
P C G G
Sbjct: 202 PACSGAG 208
>sp|Q2JH49|DNAJ_SYNJB Chaperone protein DnaJ OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=dnaJ PE=3 SV=1
Length = 394
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
VC CGGSGA C CGG+G+ + R + + + CP C G G+++ C
Sbjct: 148 VCNVCGGSGAKPGTEVKTCPTCGGSGQVRRATRTPFGNFTQVSVCPTCGGSGQVLEEPCY 207
Query: 151 VCLGTGLPNNKGLLR 165
C G GL LR
Sbjct: 208 NCNGEGLAQTTKKLR 222
>sp|Q6A997|DNAJ1_PROAC Chaperone protein DnaJ 1 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=dnaJ1 PE=3 SV=1
Length = 392
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
VC C G GA V CD C G G+ + R D+ CP C+G G ++ C
Sbjct: 146 VCPKCQGKGAQSGSEPVTCDTCQGRGEVITVQRSFLGDIRTSQPCPTCHGYGTVIPDPCQ 205
Query: 151 VCLGTG 156
C G G
Sbjct: 206 ECSGEG 211
>sp|Q1H3B9|DNAJ_METFK Chaperone protein DnaJ OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=dnaJ PE=3 SV=1
Length = 373
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---CP 150
C C GSGA V C CGG G+ + + + + CP C+G GK+V CP
Sbjct: 146 CETCHGSGARPGTQPVTCSTCGGHGQVRM-----QQGFFSVQQTCPKCHGSGKMVKDPCP 200
Query: 151 VCLGTG 156
C G G
Sbjct: 201 TCHGGG 206
>sp|Q9ZFC5|DNAJ_METSS Chaperone protein DnaJ OS=Methylovorus sp. (strain SS1 / DSM 11726)
GN=dnaJ PE=3 SV=1
Length = 371
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---CP 150
C C GSGA V C CGG G+ + + + + CP C+G GK+V CP
Sbjct: 145 CETCHGSGARPGTQPVTCTTCGGHGQVRM-----QQGFFSVQQTCPKCHGSGKMVKEPCP 199
Query: 151 VCLGTG 156
C G G
Sbjct: 200 SCQGAG 205
>sp|Q2J319|DNAJ_RHOP2 Chaperone protein DnaJ OS=Rhodopseudomonas palustris (strain HaA2)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 37.7 bits (86), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---C 149
C +C G+GA C CGG G+ + +A+ + CP+C GRG+++ C
Sbjct: 147 TCESCSGTGAKAGTKPKTCSTCGGAGRVR-----QAQGFFTLERTCPSCQGRGQIIEDPC 201
Query: 150 PVCLGTG 156
P C G+G
Sbjct: 202 PSCTGSG 208
>sp|Q2JW78|DNAJ_SYNJA Chaperone protein DnaJ OS=Synechococcus sp. (strain JA-3-3Ab)
GN=dnaJ PE=3 SV=1
Length = 394
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
VC CGGSGA +C CGG G+ + R + + + CP C G G+++ C
Sbjct: 148 VCPVCGGSGAKPGTDVKVCPTCGGAGQVRRATRTPFGNFTQVSICPTCGGAGRVLEEPCY 207
Query: 151 VCLGTGLPNNKGLLR 165
C G GL LR
Sbjct: 208 NCNGEGLAQTTKKLR 222
>sp|Q3B2T5|DNAJ_PELLD Chaperone protein DnaJ OS=Pelodictyon luteolum (strain DSM 273)
GN=dnaJ PE=3 SV=1
Length = 382
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 96 KERPVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV-- 148
K++ C+ C GSG+ C C G G+ + ++ CP C G G++V
Sbjct: 146 KKQVPCKECNGSGSKTGATETCPTCHGAGEVRQASKTMFGQFVNIAACPTCGGEGRIVKD 205
Query: 149 -CPVCLGTGL 157
CP C G G+
Sbjct: 206 RCPSCYGEGI 215
>sp|Q044A8|DNAJ_LACGA Chaperone protein DnaJ OS=Lactobacillus gasseri (strain ATCC 33323
/ DSM 20243) GN=dnaJ PE=3 SV=1
Length = 388
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
VC C GSGA + CD C GTG + + + T C C GRG ++ C
Sbjct: 157 VCPTCDGSGAEKGTHPITCDKCHGTGVMTVTRQTPLGVIQQQTTCDKCGGRGTIIKHPCQ 216
Query: 151 VCLGTGLPNNKGLLR 165
C G G + K L
Sbjct: 217 TCHGKGTIDKKQTLE 231
>sp|Q67S53|DNAJ_SYMTH Chaperone protein DnaJ OS=Symbiobacterium thermophilum (strain T /
IAM 14863) GN=dnaJ PE=3 SV=1
Length = 386
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
C C GSGA V C CGGTG+ + C C G GK+V CP
Sbjct: 152 CDTCHGSGARPGTQPVTCPKCGGTGQVQMTQHTVFGRFVNVMTCDRCRGEGKIVESPCPT 211
Query: 152 CLGTG 156
C G G
Sbjct: 212 CRGRG 216
>sp|B8IHL2|DNAJ_METNO Chaperone protein DnaJ OS=Methylobacterium nodulans (strain ORS2060
/ LMG 21967) GN=dnaJ PE=3 SV=1
Length = 388
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---C 149
C C GSGA C CGG G+ +A A+ + CPNC+GRG+++ C
Sbjct: 153 TCEVCAGSGAKAGSKPRTCPTCGGYGRVRA-----AQGFFAIERTCPNCHGRGEIIDDPC 207
Query: 150 PVCLGTG 156
C G G
Sbjct: 208 TACGGAG 214
>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=dnaJ1 PE=3 SV=1
Length = 350
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 101 CRNCGGSGA--VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGT 155
C CGG G C C G G ++ + V T CP+C GRG L+ CP C G
Sbjct: 129 CEACGGEGGRRTPCPTCRGQGVVESYRQSFFGTVVTRTACPHCKGRGYLLAETCPACRGR 188
Query: 156 G 156
G
Sbjct: 189 G 189
>sp|Q72GN6|DNAJ_THET2 Chaperone protein DnaJ OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1
Length = 350
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 101 CRNCGGSGA--VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGT 155
C CGG G C C G G ++ + V T CP+C GRG L+ CP C G
Sbjct: 129 CEACGGEGGRRTPCPTCRGQGVVESYRQSFFGTVVTRTACPHCKGRGYLLAETCPACRGR 188
Query: 156 G 156
G
Sbjct: 189 G 189
>sp|B1LZ52|DNAJ_METRJ Chaperone protein DnaJ OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=dnaJ PE=3 SV=1
Length = 380
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
C C GSGA C C G G+ +A A + CPNC+GRG++V C
Sbjct: 149 TCEVCDGSGAKPGSKPRTCPTCAGYGRVRAAQGFFAIE----RTCPNCHGRGEIVDDPCT 204
Query: 151 VCLGTGLPNNKGLL 164
C G G N + L
Sbjct: 205 ACQGAGRVNRERTL 218
>sp|C1DFM2|DNAJ_AZOVD Chaperone protein DnaJ OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=dnaJ PE=3 SV=1
Length = 375
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---CP 150
C+ C GSGA V C CGG G+ + + + + CP C+G GK++ CP
Sbjct: 147 CKTCDGSGAKKGTTPVTCTTCGGIGQVRM-----QQGFFSVQQTCPRCHGSGKMIADPCP 201
Query: 151 VCLGTG 156
C G G
Sbjct: 202 DCHGQG 207
>sp|Q1MN12|DNAJ_RHIL3 Chaperone protein DnaJ OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=dnaJ PE=3 SV=1
Length = 375
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 23/89 (25%)
Query: 78 ISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVL------CDMCGGTGKWKALNRKRAKD 131
S + + VP +I C C GSGA C C GTG+ +A A+
Sbjct: 134 FSGKTAQIRVPTSI--------TCDVCSGSGAKPGTQPKNCGTCQGTGRVRA-----AQG 180
Query: 132 VYEFTE-CPNCYGRGKLV---CPVCLGTG 156
+ CP C+GRG+++ CP C G G
Sbjct: 181 FFSIERTCPTCHGRGQIIPDPCPKCHGQG 209
>sp|O27352|DNAJ_METTH Chaperone protein DnaJ OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=dnaJ PE=3 SV=1
Length = 376
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 99 PVC---RNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVC 152
PVC R G+G C CGG+G+ + + + T CP+C G G +V C C
Sbjct: 149 PVCHGSRAEPGTGTRTCQTCGGSGQVRQVRNTILGQMMNITTCPDCQGEGTVVEKPCSNC 208
Query: 153 LGTGLPNNKGLLRR 166
N KG++R+
Sbjct: 209 ------NGKGVVRK 216
>sp|Q2KDW7|DNAJ_RHIEC Chaperone protein DnaJ OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=dnaJ PE=3 SV=1
Length = 375
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 23/89 (25%)
Query: 78 ISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVL------CDMCGGTGKWKALNRKRAKD 131
S + + VP +I C C GSGA C C GTG+ +A A+
Sbjct: 134 FSGKTAQIRVPTSI--------TCDVCSGSGAKPGTQPKNCGTCQGTGRVRA-----AQG 180
Query: 132 VYEFTE-CPNCYGRGKLV---CPVCLGTG 156
+ CP C+GRG+++ CP C G G
Sbjct: 181 FFSIERTCPTCHGRGQIIPDPCPKCHGQG 209
>sp|B0U833|DNAJ_METS4 Chaperone protein DnaJ OS=Methylobacterium sp. (strain 4-46)
GN=dnaJ PE=3 SV=1
Length = 387
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---C 149
C C GSGA +C CGG G+ +A A+ + CPNC GRG+++ C
Sbjct: 152 TCEVCAGSGAKAGSKPRVCPTCGGYGRVRA-----AQGFFAIERTCPNCQGRGEIIDDPC 206
Query: 150 PVCLGTG 156
C G G
Sbjct: 207 AACGGAG 213
>sp|Q74IT7|DNAJ_LACJO Chaperone protein DnaJ OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=dnaJ PE=3 SV=1
Length = 388
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
VC C GSGA + CD C G+G + + + T C C GRG ++ C
Sbjct: 157 VCPTCDGSGAEKGTHPITCDKCHGSGVMTVTRQTPLGVIQQQTTCDKCGGRGTIIEHPCQ 216
Query: 151 VCLGTGLPNNKGLLR 165
C G G + K L+
Sbjct: 217 TCHGQGTVDKKQTLQ 231
>sp|Q73XZ6|DNAJ1_MYCPA Chaperone protein DnaJ 1 OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=dnaJ1 PE=3 SV=1
Length = 381
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 105 GGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 156
G S V CD CGG G+ + + R V CP C G G ++ C C+G G
Sbjct: 155 GDSAPVPCDTCGGRGEVQTVQRSLLGQVMTSRPCPTCRGVGVVIPDPCHQCMGDG 209
>sp|Q1G9R3|DNAJ_LACDA Chaperone protein DnaJ OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=dnaJ PE=3
SV=1
Length = 378
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
C C GSGA + CD CGG+G R + T C C G G ++ C
Sbjct: 149 TCEVCKGSGAEKGTHPITCDKCGGSGMMTITQRSVLGMIQRQTTCDKCTGSGVIIQHPCH 208
Query: 151 VCLGTGLPNNKGLLR 165
C G G+ K L+
Sbjct: 209 NCHGKGVKTQKQTLQ 223
>sp|Q049W7|DNAJ_LACDB Chaperone protein DnaJ OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=dnaJ PE=3 SV=1
Length = 378
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
C C GSGA + CD CGG+G R + T C C G G ++ C
Sbjct: 149 TCEVCKGSGAEKGTHPITCDKCGGSGMMTITQRSVLGMIQRQTTCDKCAGSGVIIQHPCH 208
Query: 151 VCLGTGLPNNKGLLR 165
C G G+ K L+
Sbjct: 209 NCHGKGVKTQKQTLQ 223
>sp|Q5N0G1|DNAJ_SYNP6 Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1
Length = 376
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLG 154
C C GSGA C CGG G+ + R + + CP C G G+++ C
Sbjct: 148 CGTCQGSGAKAGTRPQTCTTCGGAGQVRRATRTPFGSFTQVSVCPTCEGSGQMIVDKCDD 207
Query: 155 TGLPNNKGLLRRPDARKL 172
G G LRRP K+
Sbjct: 208 CG---GAGRLRRPKKLKI 222
>sp|O33529|DNAJ_RHILE Chaperone protein DnaJ (Fragment) OS=Rhizobium leguminosarum
GN=dnaJ PE=3 SV=1
Length = 234
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 23/89 (25%)
Query: 78 ISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVL------CDMCGGTGKWKALNRKRAKD 131
S + + VP +I C C GSGA C C GTG+ +A A+
Sbjct: 134 FSGKTAQIRVPTSI--------TCDVCTGSGAKPGTQPKNCGTCQGTGRVRA-----AQG 180
Query: 132 VYEFTE-CPNCYGRGKLV---CPVCLGTG 156
+ CP C+GRG+++ CP C G G
Sbjct: 181 FFSIERTCPTCHGRGQIIPDPCPKCHGQG 209
>sp|Q8GSJ6|LQY1_ARATH Protein disulfide-isomerase LQY1 OS=Arabidopsis thaliana GN=LQY1
PE=1 SV=1
Length = 154
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 101 CRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGL 157
C C G+GA C +C G+G K+V + C NC G G L C C G+G+
Sbjct: 87 CFPCNGTGAQKCRLCVGSGNVTVELGGGEKEV---SNCINCDGAGSLTCTTCQGSGV 140
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 91 IALDGKERPV--CRNCGGSGAVLCDMCGGTG-KWKALNRKRAKD 131
+ L G E+ V C NC G+G++ C C G+G + + L+R+ KD
Sbjct: 109 VELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKD 152
>sp|Q03FR6|DNAJ_PEDPA Chaperone protein DnaJ OS=Pediococcus pentosaceus (strain ATCC
25745 / 183-1w) GN=dnaJ PE=3 SV=1
Length = 374
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
+C+ CGGSGA V C C GTG + + C C G GK + CP
Sbjct: 147 LCKTCGGSGAKEGTSPVTCHKCNGTGTIQVTQNTPLGRMVRQQTCDVCNGTGKEIKEKCP 206
Query: 151 VCLGTG 156
C GTG
Sbjct: 207 TCGGTG 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,096,946
Number of Sequences: 539616
Number of extensions: 3007993
Number of successful extensions: 8006
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 461
Number of HSP's that attempted gapping in prelim test: 7340
Number of HSP's gapped (non-prelim): 853
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)