Query 042059
Match_columns 185
No_of_seqs 203 out of 1070
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 13:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.8 2.3E-18 4.9E-23 155.7 8.7 101 75-181 112-228 (371)
2 PRK14282 chaperone protein Dna 99.7 6.6E-17 1.4E-21 145.3 9.4 102 75-180 122-239 (369)
3 PRK14298 chaperone protein Dna 99.7 8E-17 1.7E-21 145.5 9.1 103 75-181 111-229 (377)
4 PRK14278 chaperone protein Dna 99.7 7.9E-17 1.7E-21 145.5 8.9 103 75-181 109-227 (378)
5 TIGR02349 DnaJ_bact chaperone 99.7 9.3E-17 2E-21 143.2 8.7 104 75-182 113-232 (354)
6 PRK14280 chaperone protein Dna 99.7 1.4E-16 3.1E-21 143.6 9.3 103 75-181 113-231 (376)
7 PRK14276 chaperone protein Dna 99.7 1.4E-16 3.1E-21 143.8 8.8 103 75-181 116-234 (380)
8 PRK14277 chaperone protein Dna 99.7 1.9E-16 4.2E-21 143.2 9.2 103 75-181 125-243 (386)
9 PRK14281 chaperone protein Dna 99.7 1.8E-16 3.9E-21 144.0 9.0 102 76-181 134-250 (397)
10 PRK14296 chaperone protein Dna 99.7 1.7E-16 3.8E-21 143.1 8.4 103 75-181 119-237 (372)
11 PRK14297 chaperone protein Dna 99.7 2.7E-16 5.8E-21 141.9 9.2 103 75-181 118-236 (380)
12 PRK14287 chaperone protein Dna 99.6 4.4E-16 9.6E-21 140.3 8.7 103 75-181 108-226 (371)
13 PRK14289 chaperone protein Dna 99.6 4.4E-16 9.5E-21 140.7 8.6 103 75-181 124-242 (386)
14 PRK14279 chaperone protein Dna 99.6 4.7E-16 1E-20 141.1 8.6 99 75-181 143-257 (392)
15 PTZ00037 DnaJ_C chaperone prot 99.6 7.5E-16 1.6E-20 141.4 8.5 103 75-181 120-239 (421)
16 PRK14284 chaperone protein Dna 99.6 7.4E-16 1.6E-20 139.6 8.2 99 76-182 129-243 (391)
17 PRK14285 chaperone protein Dna 99.6 7.2E-16 1.6E-20 138.7 8.0 99 75-181 116-230 (365)
18 PRK14286 chaperone protein Dna 99.6 9.5E-16 2.1E-20 138.2 8.4 98 75-180 120-233 (372)
19 PRK10767 chaperone protein Dna 99.6 1.5E-15 3.3E-20 136.4 8.7 99 75-181 112-226 (371)
20 PRK14293 chaperone protein Dna 99.6 1.4E-15 3.1E-20 136.9 8.5 102 75-180 113-230 (374)
21 PRK14295 chaperone protein Dna 99.6 1.5E-15 3.3E-20 137.7 8.7 99 75-181 136-250 (389)
22 PRK14301 chaperone protein Dna 99.6 1.3E-15 2.8E-20 137.4 7.8 99 75-181 114-228 (373)
23 PRK14288 chaperone protein Dna 99.6 1.7E-15 3.7E-20 136.5 8.1 98 76-181 111-223 (369)
24 PRK14300 chaperone protein Dna 99.6 2.4E-15 5.3E-20 135.5 8.9 98 76-181 116-229 (372)
25 PRK14294 chaperone protein Dna 99.6 2.8E-15 6E-20 134.7 8.3 98 75-180 114-227 (366)
26 PRK14283 chaperone protein Dna 99.6 2.8E-15 6E-20 135.3 8.2 101 76-180 117-233 (378)
27 PRK14292 chaperone protein Dna 99.6 5.1E-15 1.1E-19 133.0 8.2 103 75-181 109-228 (371)
28 PRK14290 chaperone protein Dna 99.6 5.4E-15 1.2E-19 132.8 8.3 99 77-181 121-236 (365)
29 PRK14291 chaperone protein Dna 99.6 7E-15 1.5E-19 132.9 8.4 98 75-180 126-238 (382)
30 KOG0712 Molecular chaperone (D 99.4 3.5E-13 7.6E-18 120.8 6.3 101 76-180 98-216 (337)
31 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.3 1.2E-11 2.7E-16 86.5 6.6 56 101-156 1-66 (66)
32 PLN03165 chaperone protein dna 99.1 3.9E-10 8.4E-15 87.2 9.0 58 99-159 42-99 (111)
33 KOG2813 Predicted molecular ch 98.0 5.2E-06 1.1E-10 74.8 3.6 66 99-164 188-274 (406)
34 COG1107 Archaea-specific RecJ- 97.6 3.5E-05 7.5E-10 74.0 3.2 64 99-162 3-84 (715)
35 KOG0715 Molecular chaperone (D 97.5 3E-05 6.5E-10 68.5 1.3 87 76-166 135-237 (288)
36 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.5 8.7E-05 1.9E-09 51.8 3.2 38 97-145 14-66 (66)
37 KOG2813 Predicted molecular ch 97.5 6E-05 1.3E-09 68.1 2.4 51 110-160 188-259 (406)
38 COG0484 DnaJ DnaJ-class molecu 97.4 0.00013 2.9E-09 66.7 3.8 56 64-148 142-210 (371)
39 TIGR02642 phage_xxxx uncharact 96.8 0.0012 2.5E-08 55.4 3.3 33 134-166 98-135 (186)
40 COG1107 Archaea-specific RecJ- 96.5 0.0027 5.9E-08 61.4 4.3 25 99-123 54-82 (715)
41 PRK14300 chaperone protein Dna 96.3 0.0027 5.8E-08 57.7 2.8 37 99-147 163-210 (372)
42 PRK14296 chaperone protein Dna 96.3 0.003 6.5E-08 57.5 3.1 37 99-147 167-218 (372)
43 PRK14278 chaperone protein Dna 96.3 0.0031 6.7E-08 57.4 3.1 37 99-147 157-208 (378)
44 PRK14279 chaperone protein Dna 96.3 0.0031 6.8E-08 57.7 2.9 38 99-148 191-239 (392)
45 KOG2824 Glutaredoxin-related p 96.2 0.0062 1.3E-07 54.0 4.5 51 99-153 230-280 (281)
46 PRK14298 chaperone protein Dna 96.2 0.003 6.6E-08 57.5 2.7 38 99-148 159-211 (377)
47 PRK14297 chaperone protein Dna 96.2 0.0042 9.2E-08 56.5 3.5 37 99-147 166-217 (380)
48 PRK14301 chaperone protein Dna 96.2 0.0034 7.4E-08 57.0 2.7 37 99-147 162-209 (373)
49 PRK14286 chaperone protein Dna 96.2 0.0039 8.4E-08 56.7 3.0 38 99-148 168-216 (372)
50 PRK14285 chaperone protein Dna 96.1 0.0037 8E-08 56.7 2.6 37 99-147 164-211 (365)
51 PRK14288 chaperone protein Dna 96.1 0.005 1.1E-07 55.9 3.4 37 99-147 157-204 (369)
52 PRK14295 chaperone protein Dna 96.1 0.0047 1E-07 56.5 3.1 37 99-147 184-231 (389)
53 PRK14284 chaperone protein Dna 96.1 0.0038 8.2E-08 57.0 2.5 37 99-147 176-223 (391)
54 PRK14282 chaperone protein Dna 96.1 0.0048 1E-07 55.9 3.1 37 99-147 170-221 (369)
55 PRK10767 chaperone protein Dna 96.0 0.0044 9.6E-08 56.0 2.8 37 99-147 160-207 (371)
56 PRK14280 chaperone protein Dna 96.0 0.0043 9.4E-08 56.4 2.7 37 99-147 161-212 (376)
57 PRK14294 chaperone protein Dna 96.0 0.0047 1E-07 55.9 2.7 37 99-147 162-209 (366)
58 PRK14276 chaperone protein Dna 95.9 0.0046 9.9E-08 56.3 2.3 37 99-147 164-215 (380)
59 PRK14277 chaperone protein Dna 95.9 0.0056 1.2E-07 55.8 2.8 37 99-147 173-224 (386)
60 PRK14290 chaperone protein Dna 95.9 0.0066 1.4E-07 54.9 3.3 37 99-147 166-217 (365)
61 PTZ00037 DnaJ_C chaperone prot 95.8 0.007 1.5E-07 56.2 3.1 39 99-147 167-220 (421)
62 TIGR02349 DnaJ_bact chaperone 95.8 0.0066 1.4E-07 54.5 2.8 38 99-148 161-213 (354)
63 PRK14281 chaperone protein Dna 95.8 0.007 1.5E-07 55.4 3.0 38 99-148 180-232 (397)
64 PRK14289 chaperone protein Dna 95.7 0.0062 1.3E-07 55.4 2.4 37 99-147 172-223 (386)
65 PLN03165 chaperone protein dna 95.6 0.012 2.6E-07 45.7 3.3 26 99-124 76-101 (111)
66 PRK14293 chaperone protein Dna 95.6 0.0092 2E-07 54.2 3.0 37 99-147 161-212 (374)
67 PRK14287 chaperone protein Dna 95.4 0.0098 2.1E-07 54.0 2.3 38 99-148 156-208 (371)
68 PRK14283 chaperone protein Dna 95.3 0.013 2.8E-07 53.3 2.7 37 99-147 164-215 (378)
69 PRK14291 chaperone protein Dna 95.1 0.018 3.9E-07 52.5 3.2 36 99-147 174-220 (382)
70 cd03031 GRX_GRX_like Glutaredo 95.1 0.025 5.3E-07 45.6 3.6 48 99-149 100-147 (147)
71 PRK14292 chaperone protein Dna 95.1 0.018 3.8E-07 52.2 2.9 37 99-147 158-209 (371)
72 TIGR02642 phage_xxxx uncharact 95.0 0.016 3.4E-07 48.7 2.4 25 99-123 100-129 (186)
73 KOG0712 Molecular chaperone (D 87.9 0.29 6.3E-06 44.6 1.7 23 99-121 171-198 (337)
74 PRK14892 putative transcriptio 86.3 0.82 1.8E-05 34.8 3.1 40 143-183 39-80 (99)
75 cd03031 GRX_GRX_like Glutaredo 71.8 5.4 0.00012 32.1 3.7 23 137-159 101-123 (147)
76 TIGR00630 uvra excinuclease AB 71.1 3.1 6.8E-05 42.5 2.7 13 149-161 762-774 (924)
77 TIGR00630 uvra excinuclease AB 64.9 3.5 7.6E-05 42.2 1.6 35 110-148 737-772 (924)
78 PF03589 Antiterm: Antitermina 64.4 2 4.3E-05 32.3 -0.3 37 110-146 6-43 (95)
79 PRK00349 uvrA excinuclease ABC 61.3 6.4 0.00014 40.4 2.7 31 135-165 738-780 (943)
80 PRK00349 uvrA excinuclease ABC 59.9 7.5 0.00016 40.0 2.8 34 110-147 739-773 (943)
81 PRK10266 curved DNA-binding pr 59.2 8.5 0.00018 34.0 2.8 23 76-98 115-137 (306)
82 PF07092 DUF1356: Protein of u 58.2 4.6 0.0001 35.3 0.9 27 134-160 26-52 (238)
83 PRK00635 excinuclease ABC subu 56.4 7.7 0.00017 42.5 2.4 13 111-123 1609-1621(1809)
84 TIGR03655 anti_R_Lar restricti 55.0 21 0.00045 23.6 3.5 14 110-123 2-15 (53)
85 KOG2824 Glutaredoxin-related p 54.1 11 0.00024 33.7 2.6 25 136-160 230-254 (281)
86 PF07092 DUF1356: Protein of u 52.5 7.6 0.00016 34.0 1.3 21 103-123 32-52 (238)
87 COG0178 UvrA Excinuclease ATPa 48.2 17 0.00037 37.3 3.1 13 149-161 756-768 (935)
88 PRK00635 excinuclease ABC subu 46.0 9 0.00019 42.1 0.9 27 135-161 1607-1645(1809)
89 COG1198 PriA Primosomal protei 45.4 28 0.00061 35.0 4.2 47 99-155 436-484 (730)
90 PRK14299 chaperone protein Dna 45.3 14 0.00031 32.4 1.9 23 76-98 127-149 (291)
91 COG0178 UvrA Excinuclease ATPa 45.0 19 0.0004 37.0 2.9 33 110-146 731-764 (935)
92 PF14205 Cys_rich_KTR: Cystein 44.8 48 0.001 22.8 4.0 13 149-161 31-43 (55)
93 KOG0715 Molecular chaperone (D 43.9 8.5 0.00018 34.1 0.3 42 94-147 177-229 (288)
94 TIGR00595 priA primosomal prot 43.6 27 0.00059 33.1 3.6 48 99-156 214-263 (505)
95 PF01096 TFIIS_C: Transcriptio 43.2 39 0.00083 21.1 3.2 32 111-142 2-35 (39)
96 smart00440 ZnF_C2C2 C2C2 Zinc 43.2 47 0.001 20.8 3.6 32 111-142 2-35 (40)
97 PRK04023 DNA polymerase II lar 40.2 25 0.00054 36.8 3.0 52 99-163 627-680 (1121)
98 PF08271 TF_Zn_Ribbon: TFIIB z 39.2 35 0.00076 21.4 2.6 10 143-152 16-25 (43)
99 COG5216 Uncharacterized conser 36.9 28 0.0006 24.6 1.9 22 84-105 30-51 (67)
100 TIGR02098 MJ0042_CXXC MJ0042 f 36.0 47 0.001 20.0 2.7 10 111-120 4-13 (38)
101 PF13917 zf-CCHC_3: Zinc knuck 35.8 23 0.00051 22.9 1.3 35 135-175 4-40 (42)
102 PF14353 CpXC: CpXC protein 34.7 47 0.001 25.3 3.1 37 110-147 2-50 (128)
103 TIGR00310 ZPR1_znf ZPR1 zinc f 32.7 66 0.0014 27.0 3.9 38 111-148 2-43 (192)
104 PRK05580 primosome assembly pr 32.2 49 0.0011 32.6 3.5 48 99-156 382-431 (679)
105 PRK14873 primosome assembly pr 31.7 55 0.0012 32.5 3.7 48 99-156 384-432 (665)
106 KOG2907 RNA polymerase I trans 31.3 67 0.0015 25.3 3.5 82 60-141 21-108 (116)
107 smart00709 Zpr1 Duplicated dom 30.1 79 0.0017 25.7 3.9 38 111-148 2-42 (160)
108 PRK05978 hypothetical protein; 29.0 26 0.00056 28.5 0.9 8 134-141 51-58 (148)
109 PF14354 Lar_restr_allev: Rest 28.7 74 0.0016 21.0 2.9 14 110-124 4-17 (61)
110 TIGR00340 zpr1_rel ZPR1-relate 28.6 78 0.0017 26.0 3.6 36 112-147 1-40 (163)
111 PF01556 CTDII: DnaJ C termina 28.2 25 0.00055 24.7 0.6 19 80-98 1-19 (81)
112 PF13719 zinc_ribbon_5: zinc-r 27.9 46 0.00099 20.5 1.7 11 111-121 4-14 (37)
113 PF05129 Elf1: Transcription e 27.7 31 0.00066 25.1 1.0 37 142-179 42-80 (81)
114 PRK14714 DNA polymerase II lar 27.0 63 0.0014 34.7 3.4 52 99-163 668-726 (1337)
115 PF03367 zf-ZPR1: ZPR1 zinc-fi 26.3 97 0.0021 25.2 3.8 39 110-148 2-43 (161)
116 PF10080 DUF2318: Predicted me 26.1 1.2E+02 0.0027 23.0 4.1 19 135-153 35-59 (102)
117 PF08792 A2L_zn_ribbon: A2L zi 25.8 85 0.0019 19.1 2.6 11 111-121 5-15 (33)
118 PF14599 zinc_ribbon_6: Zinc-r 25.3 38 0.00083 23.6 1.1 19 91-109 22-41 (61)
119 PRK00423 tfb transcription ini 24.4 58 0.0013 28.9 2.3 25 143-170 27-52 (310)
120 smart00778 Prim_Zn_Ribbon Zinc 24.0 55 0.0012 20.6 1.5 12 110-121 4-15 (37)
121 PF08273 Prim_Zn_Ribbon: Zinc- 24.0 44 0.00096 21.3 1.1 13 110-122 4-16 (40)
122 PHA02998 RNA polymerase subuni 23.7 1.2E+02 0.0026 25.8 3.8 33 110-142 144-178 (195)
123 KOG2923 Uncharacterized conser 23.2 47 0.001 23.7 1.2 21 85-105 31-51 (67)
124 PF14369 zf-RING_3: zinc-finge 23.0 70 0.0015 19.6 1.8 9 149-158 24-32 (35)
125 COG5257 GCD11 Translation init 21.0 1.2E+02 0.0027 28.3 3.8 34 149-182 75-109 (415)
126 PF04438 zf-HIT: HIT zinc fing 20.5 63 0.0014 19.2 1.2 18 136-153 3-20 (30)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.3e-18 Score=155.71 Aligned_cols=101 Identities=25% Similarity=0.485 Sum_probs=91.7
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.+|.|+.+.|+|+|+|||+|.++ +.|..|+|+|+ .+|+.|+|+|.+...+++ |.++.+++|+.|
T Consensus 112 ~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C 189 (371)
T COG0484 112 PRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTC 189 (371)
T ss_pred cccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCC
Confidence 579999999999999999999998 99999999987 799999999999887766 888899999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
+|+|+++ |+.|+|.|++++++.|.+ +|..++.+|+-
T Consensus 190 ~G~G~~i~~pC~~C~G~G~v~~~~~i~V----~IPaGv~~g~~ 228 (371)
T COG0484 190 NGTGKIIKDPCGKCKGKGRVKKKKSISV----NIPAGVDDGDR 228 (371)
T ss_pred ccceeECCCCCCCCCCCCeEeeeeEEEE----ECCCCCccCCE
Confidence 9999998 999999999999999998 66666666653
No 2
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=6.6e-17 Score=145.35 Aligned_cols=102 Identities=25% Similarity=0.451 Sum_probs=90.3
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.+++|+.+.|.|+|+|+|+|.++ +.|..|+|+|. .+|+.|+|+|.++...+..+|+++.+.+|+.|
T Consensus 122 ~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 201 (369)
T PRK14282 122 ARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERC 201 (369)
T ss_pred CCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCC
Confidence 357899999999999999999987 78999999997 68999999999998888889999989999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR 180 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~ 180 (185)
+|+|+++ |+.|.|.|++.+++.+++ .|..+|.+|.
T Consensus 202 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~ 239 (369)
T PRK14282 202 GGTGKIPGEYCHECGGSGRIRRRVRTTV----KIPAGVEDGT 239 (369)
T ss_pred CCcceeCCCCCCCCCCceeEEEEEEEEE----EeCCCCCCCC
Confidence 9999987 999999999999888877 4444455554
No 3
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=8e-17 Score=145.49 Aligned_cols=103 Identities=27% Similarity=0.481 Sum_probs=90.7
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. .+|+.|+|+|.++...+.++|+++.+.+|+.|
T Consensus 111 ~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 190 (377)
T PRK14298 111 PRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTC 190 (377)
T ss_pred CCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCC
Confidence 467899999999999999999987 88999999997 68999999999988777666778899999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |+.|+|.|++.+++.+++ .|..+|.+|..
T Consensus 191 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~IppG~~~G~~ 229 (377)
T PRK14298 191 HGRGQVIESPCPVCSGTGKVRKTRKITV----NVPAGADSGLR 229 (377)
T ss_pred CCCCcccCCCCCCCCCccEEEEEEEEEe----cCCCCCCCCCE
Confidence 9999987 999999999999998887 55556666553
No 4
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=7.9e-17 Score=145.47 Aligned_cols=103 Identities=26% Similarity=0.530 Sum_probs=91.6
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. .+|+.|+|+|.+....+..+|+++.+.+|+.|
T Consensus 109 ~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 188 (378)
T PRK14278 109 VRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTC 188 (378)
T ss_pred CCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCC
Confidence 357899999999999999999987 88999999997 68999999999888777778888888999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
+|+|+++ |+.|.|.|++.+++.+++ .|..+|.+|.-
T Consensus 189 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 227 (378)
T PRK14278 189 RGVGEVIPDPCHECAGDGRVRARREITV----KIPAGVGDGMR 227 (378)
T ss_pred CccceeeCCCCCCCCCceeEecceEEEE----EECCCCCCCcE
Confidence 9999998 999999999999999888 56666666654
No 5
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.68 E-value=9.3e-17 Score=143.18 Aligned_cols=104 Identities=26% Similarity=0.492 Sum_probs=93.0
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.+++|+.+.|.|+|+|+|+|.++ +.|..|+|+|. ..|+.|+|+|.++...++++|+++.+++|+.|
T Consensus 113 ~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (354)
T TIGR02349 113 PRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTC 192 (354)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCC
Confidence 457899999999999999999987 88999999996 67999999999998888888999889999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLL 182 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l~ 182 (185)
.|+|+++ |+.|.|.|++.+.+.++. .|..+|++|..+
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~i 232 (354)
T TIGR02349 193 GGEGKIIKEPCSTCKGKGRVKERKTITV----KIPAGVDTGQRL 232 (354)
T ss_pred CCcceecCCCCCCCCCCcEecccceEEE----EECCCCCCCCEE
Confidence 9999987 999999999999998888 666677766543
No 6
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.4e-16 Score=143.65 Aligned_cols=103 Identities=28% Similarity=0.552 Sum_probs=90.6
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.+....+.++|+++.+.+|+.|
T Consensus 113 ~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (376)
T PRK14280 113 PRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHC 192 (376)
T ss_pred cccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCC
Confidence 357899999999999999999997 89999999996 68999999999988887888998889999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |+.|+|.|++.+.+.+++ .|..+|.+|..
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~i~V----~Ip~G~~~G~~ 231 (376)
T PRK14280 193 NGTGQEIKEKCPTCHGKGKVRKRKKINV----KIPAGVDNGQQ 231 (376)
T ss_pred CCCCceecCCCCCCCCceEEEEEEEEEE----EeCCCCcCCcE
Confidence 9999988 999999999999888877 44556665543
No 7
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.4e-16 Score=143.78 Aligned_cols=103 Identities=27% Similarity=0.462 Sum_probs=90.5
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.+....+..+|+++.+.+|+.|
T Consensus 116 ~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 195 (380)
T PRK14276 116 PRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVC 195 (380)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCC
Confidence 357899999999999999999987 89999999997 68999999999988888888999889999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |+.|.|.|++.+.+.++. .|..+|.+|..
T Consensus 196 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V----~Ip~G~~~G~~ 234 (380)
T PRK14276 196 HGTGKEIKEPCQTCHGTGHEKQAHTVSV----KIPAGVETGQQ 234 (380)
T ss_pred CCCCccccCCCCCCCCceEEEEEEEEEE----EeCCCccCCcE
Confidence 9999988 999999999998888877 44455555543
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.9e-16 Score=143.20 Aligned_cols=103 Identities=25% Similarity=0.499 Sum_probs=90.2
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. .+|+.|+|+|.++...+..+|+++...+|+.|
T Consensus 125 ~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 204 (386)
T PRK14277 125 PQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRC 204 (386)
T ss_pred CCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCC
Confidence 357899999999999999999987 88999999997 68999999999988888888999888999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |+.|+|.|++.+.+.++. .+..+|.+|..
T Consensus 205 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~ 243 (386)
T PRK14277 205 HGEGKIITDPCNKCGGTGRIRRRRKIKV----NIPAGIDDGQM 243 (386)
T ss_pred CcceeeccCCCCCCCCCcEEeeeeEEEE----ecCCCccCCcE
Confidence 9999998 999999999998888876 34445555543
No 9
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.8e-16 Score=143.95 Aligned_cols=102 Identities=23% Similarity=0.565 Sum_probs=91.6
Q ss_pred cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCCC
Q 042059 76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYG 143 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G 143 (185)
.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.+....+..+|+++.+++|+.|.|
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 213 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGG 213 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcc
Confidence 46899999999999999999987 88999999997 6799999999998888888899888899999999
Q ss_pred CceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 144 RGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 144 ~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
+|+++ |+.|+|.|++.+++.+++ .|..+|.+|+.
T Consensus 214 ~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 250 (397)
T PRK14281 214 EGRVVKDRCPACYGEGIKQGEVTVKV----TVPAGVQDGNY 250 (397)
T ss_pred eeeeeCCCCCCCCCCccEecceEEEE----ecCCCCCCCCE
Confidence 99998 999999999999988887 56666776654
No 10
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.7e-16 Score=143.06 Aligned_cols=103 Identities=21% Similarity=0.381 Sum_probs=87.8
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. .+|+.|+|+|.++..++.++..++.+.+|+.|
T Consensus 119 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C 198 (372)
T PRK14296 119 STKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVC 198 (372)
T ss_pred cCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCc
Confidence 457899999999999999999987 78999999997 67999999999888766555445678899999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |+.|+|.|++.+.+.+++ .|..+|++|..
T Consensus 199 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 237 (372)
T PRK14296 199 NGAGKIIKNKCKNCKGKGKYLERKKIEV----NIPKGIRPNQQ 237 (372)
T ss_pred CCcceeecccccCCCCceEEEEEEEEEE----EECCCCCCCCE
Confidence 9999998 999999999999888877 55555665543
No 11
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=2.7e-16 Score=141.90 Aligned_cols=103 Identities=25% Similarity=0.512 Sum_probs=90.5
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. ..|+.|+|+|++....+.++|+++.+.+|+.|
T Consensus 118 ~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 197 (380)
T PRK14297 118 PQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKC 197 (380)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCC
Confidence 457899999999999999999987 88999999997 67999999999988887888988899999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
+|+|.++ |..|+|.|++.+.+.++. .+..+|.+|..
T Consensus 198 ~G~G~~~~~~C~~C~G~g~v~~~~~i~V----~Ip~G~~~G~~ 236 (380)
T PRK14297 198 GGSGKVIEDPCNKCHGKGKVRKNRKIKV----NVPAGVDTGNV 236 (380)
T ss_pred CCCceEcCCCCCCCCCCeEEEeEeEEEE----EeCCCCCCCcE
Confidence 9999987 999999999988888877 34456666554
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=4.4e-16 Score=140.31 Aligned_cols=103 Identities=26% Similarity=0.490 Sum_probs=89.9
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|++....+.++|+++.+.+|+.|
T Consensus 108 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 187 (371)
T PRK14287 108 PRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHC 187 (371)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCC
Confidence 357899999999999999999987 88999999996 67999999999988888888999889999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |..|.|.+++.+.+.++. .|..+|.+|..
T Consensus 188 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~ 226 (371)
T PRK14287 188 EGTGKIIKQKCATCGGKGKVRKRKKINV----KVPAGIDHGQQ 226 (371)
T ss_pred CCCCccccccCCCCCCeeEEeeeEEEEE----EECCcCCCCCE
Confidence 9999987 999999999988887776 44455555543
No 13
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=4.4e-16 Score=140.68 Aligned_cols=103 Identities=24% Similarity=0.492 Sum_probs=91.2
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.++...+..+|+++.+.+|+.|
T Consensus 124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 203 (386)
T PRK14289 124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTC 203 (386)
T ss_pred CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCC
Confidence 357899999999999999999987 89999999997 68999999999998888888999889999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
+|+|.++ |+.|.|.|++.+.+.+++ +|..+|++|..
T Consensus 204 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 242 (386)
T PRK14289 204 NGEGKIIKKKCKKCGGEGIVYGEEVITV----KIPAGVAEGMQ 242 (386)
T ss_pred CccccccCcCCCCCCCCcEEeeeEEEEE----EeCCCCCCCCE
Confidence 9999987 999999999999888877 55556665543
No 14
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=4.7e-16 Score=141.13 Aligned_cols=99 Identities=22% Similarity=0.448 Sum_probs=86.4
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|+.|+|+|. .+|+.|+|+|.++... |+++.+++|+.|
T Consensus 143 ~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C 218 (392)
T PRK14279 143 PRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDC 218 (392)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCC
Confidence 457899999999999999999987 88999999997 6799999999987643 677888999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
+|+|+++ |+.|.|.|++.+++.+++ .|..+|.+|+.
T Consensus 219 ~G~G~~i~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 257 (392)
T PRK14279 219 RGTGSIIEDPCEECKGTGVTTRTRTINV----RIPPGVEDGQR 257 (392)
T ss_pred CceeEEeCCcCCCCCCCeEEEEeeeeEE----EeCCCCCCCcE
Confidence 9999998 999999999999988887 55566666653
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.63 E-value=7.5e-16 Score=141.35 Aligned_cols=103 Identities=24% Similarity=0.491 Sum_probs=88.4
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY 142 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~ 142 (185)
+.+|.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. .+|+.|+|+|.++...+.++..++.+.+|+.|+
T Consensus 120 ~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~ 199 (421)
T PTZ00037 120 KKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCN 199 (421)
T ss_pred ccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCC
Confidence 357899999999999999999987 78999999997 689999999997776555442345789999999
Q ss_pred CCceEE-----CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 143 GRGKLV-----CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 143 G~G~~i-----C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
|+|+++ |+.|.|.|++.+.+.|++ +|..+|.+|.-
T Consensus 200 G~G~~i~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~dG~~ 239 (421)
T PTZ00037 200 GQGKIIPESKKCKNCSGKGVKKTRKILEV----NIDKGVPNQHK 239 (421)
T ss_pred CcceeccccccCCcCCCcceeeeeeEEEE----eeCCCCCCCcE
Confidence 999985 999999999999999998 67777777754
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=7.4e-16 Score=139.63 Aligned_cols=99 Identities=27% Similarity=0.537 Sum_probs=87.2
Q ss_pred cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059 76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY 142 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~ 142 (185)
.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.+.... |+++.+.+|+.|+
T Consensus 129 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~ 204 (391)
T PRK14284 129 RQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECG 204 (391)
T ss_pred CCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCC
Confidence 57899999999999999999987 88999999997 6899999999887542 7788889999999
Q ss_pred CCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcccc
Q 042059 143 GRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLL 182 (185)
Q Consensus 143 G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l~ 182 (185)
|+|+++ |+.|.|.|++.+++.+++ .|..+|.+|+-+
T Consensus 205 G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~i 243 (391)
T PRK14284 205 GEGRVITDPCSVCRGQGRIKDKRSVHV----HIPAGVDSGMRL 243 (391)
T ss_pred CCCcccCCcCCCCCCcceecceEEEEE----EECCCCCCCCEE
Confidence 999987 999999999999999988 666677776543
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=7.2e-16 Score=138.68 Aligned_cols=99 Identities=24% Similarity=0.510 Sum_probs=87.0
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. ..|+.|+|+|++.. .+|+++.+.+|+.|
T Consensus 116 ~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C 191 (365)
T PRK14285 116 HEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKC 191 (365)
T ss_pred CCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCC
Confidence 357899999999999999999987 88999999996 67999999998775 35788889999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |+.|+|.|++.+++.++. .|..+|.+|+-
T Consensus 192 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 230 (365)
T PRK14285 192 YGNGKIISNPCKSCKGKGSLKKKETIEL----KIPAGIDDNQQ 230 (365)
T ss_pred CCcccccCCCCCCCCCCCEEeccEEEEE----EECCCCCCCCE
Confidence 9999998 999999999999988887 56666766653
No 18
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=9.5e-16 Score=138.22 Aligned_cols=98 Identities=30% Similarity=0.549 Sum_probs=84.6
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.+.... |+++.+.+|+.|
T Consensus 120 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C 195 (372)
T PRK14286 120 PQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTC 195 (372)
T ss_pred CCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCC
Confidence 457899999999999999999987 88999999997 6899999999887642 778888999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR 180 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~ 180 (185)
.|+|+++ |+.|+|.|++.+++.+++ .|..+|.+|.
T Consensus 196 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V----~Ip~G~~~G~ 233 (372)
T PRK14286 196 RGKGTVISNPCKTCGGQGLQEKRRTINI----KIPPGVETGS 233 (372)
T ss_pred CceeeEecccCCCCCCCcEEecceEEEE----EECCCCCCCC
Confidence 9999998 999999999999888877 4444555544
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=1.5e-15 Score=136.39 Aligned_cols=99 Identities=26% Similarity=0.495 Sum_probs=85.4
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. ..|+.|+|+|.+.... |+++.+.+|+.|
T Consensus 112 ~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C 187 (371)
T PRK10767 112 ARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTC 187 (371)
T ss_pred CCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCC
Confidence 467899999999999999999987 89999999997 5899999999877643 777888999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |+.|.|.|++.+.+.++. +|..+|.+|..
T Consensus 188 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~ 226 (371)
T PRK10767 188 HGRGKIIKDPCKKCHGQGRVEKEKTLSV----KIPAGVDTGDR 226 (371)
T ss_pred CCceeECCCCCCCCCCCceEeeeeeEEE----ecCCCCCCCcE
Confidence 9999987 999999999999888887 44555555543
No 20
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=1.4e-15 Score=136.93 Aligned_cols=102 Identities=26% Similarity=0.549 Sum_probs=88.2
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. ..|+.|+|+|.+....+.++|+++.+.+|+.|
T Consensus 113 ~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (374)
T PRK14293 113 PQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTC 192 (374)
T ss_pred ccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCC
Confidence 356889999999999999999987 88999999997 67999999999988888888999888999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR 180 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~ 180 (185)
.|+|+++ |..|.|.|++.+.+.++. .|..+|++|+
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~IppG~~~G~ 230 (374)
T PRK14293 193 NGTGQVIEDPCDACGGQGVKQVTKKLKI----NIPAGVDTGT 230 (374)
T ss_pred CcceeEeccCCCCCCCCcccccceEEEE----EeCCCCCCCC
Confidence 9999997 999999999998877765 3344455544
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=1.5e-15 Score=137.73 Aligned_cols=99 Identities=27% Similarity=0.554 Sum_probs=86.0
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.+.... |.|+.+.+|+.|
T Consensus 136 ~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C 211 (389)
T PRK14295 136 PRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDC 211 (389)
T ss_pred CCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCC
Confidence 357899999999999999999987 78999999997 6899999999987643 677888999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
.|+|+++ |+.|.|.|++.+.+.++. .|..+|++|+.
T Consensus 212 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V----~Ip~G~~~G~~ 250 (389)
T PRK14295 212 KGRGLIADDPCLVCKGSGRAKSSRTMQV----RIPAGVSDGQR 250 (389)
T ss_pred cceeEEeccCCCCCCCCceEeeeeEEEE----EeCCCCCCCCE
Confidence 9999998 999999999999888887 55566666653
No 22
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=1.3e-15 Score=137.40 Aligned_cols=99 Identities=29% Similarity=0.574 Sum_probs=85.7
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. ..|+.|+|+|.+... .|+++.+.+|+.|
T Consensus 114 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C 189 (373)
T PRK14301 114 PQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQS----QGFFQIAVPCPVC 189 (373)
T ss_pred CCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEE----eeeEEEEEeCCCC
Confidence 457899999999999999999987 88999999997 679999999998753 2778889999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
+|+|+++ |+.|+|.|++.+++.+++ .|..+|.+|..
T Consensus 190 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~ 228 (373)
T PRK14301 190 RGEGRVITHPCPKCKGSGIVQQTRELKV----RIPAGVDTGSR 228 (373)
T ss_pred CceeeecCCCCCCCCCCceeccceEEEE----EeCCCCcCCCE
Confidence 9999998 999999999999888887 45555665543
No 23
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.7e-15 Score=136.46 Aligned_cols=98 Identities=20% Similarity=0.434 Sum_probs=85.4
Q ss_pred cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCCC
Q 042059 76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYG 143 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G 143 (185)
.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.+.... |+++.+++|+.|.|
T Consensus 111 ~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G 186 (369)
T PRK14288 111 SIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQG 186 (369)
T ss_pred CCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCC
Confidence 56899999999999999999987 69999999997 6899999999876643 77788889999999
Q ss_pred CceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 144 RGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 144 ~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
+|+++ |+.|.|.|++.+.+.+++ .|..+|++|..
T Consensus 187 ~G~~~~~~C~~C~G~g~v~~~~~l~V----~IP~G~~~G~~ 223 (369)
T PRK14288 187 KGKIIKTPCQACKGKTYILKDEEIDA----IIPEGIDDQNR 223 (369)
T ss_pred CceEccccCccCCCcceEEEEEEEEE----ecCCCCCCCCE
Confidence 99988 999999999999999988 55566666654
No 24
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=2.4e-15 Score=135.46 Aligned_cols=98 Identities=26% Similarity=0.470 Sum_probs=85.5
Q ss_pred cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059 76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY 142 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~ 142 (185)
.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. .+|+.|+|+|.++.. .|+++.+.+|+.|.
T Consensus 116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~ 191 (372)
T PRK14300 116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQ 191 (372)
T ss_pred CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCC
Confidence 47899999999999999999987 89999999996 789999999987753 37888889999999
Q ss_pred CCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 143 GRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 143 G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
|+|+++ |+.|+|.|++.+.+.+++ .|..+|++|.-
T Consensus 192 G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 229 (372)
T PRK14300 192 GNGQIIKNPCKKCHGMGRYHKQRNLSV----NIPAGVENGTR 229 (372)
T ss_pred ccceEeCCCCCCCCCceEEEeeEEEEE----EECCCCCCCcE
Confidence 999998 999999999999888887 55566666643
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=2.8e-15 Score=134.74 Aligned_cols=98 Identities=28% Similarity=0.526 Sum_probs=85.0
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. ..|+.|+|+|.+... .|+++.+++|+.|
T Consensus 114 ~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C 189 (366)
T PRK14294 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRC 189 (366)
T ss_pred CCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCC
Confidence 357899999999999999999987 88999999997 579999999988753 2778889999999
Q ss_pred CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059 142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR 180 (185)
Q Consensus 142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~ 180 (185)
+|+|+++ |+.|.|.|++.+++.+++ .|..+|++|.
T Consensus 190 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~ 227 (366)
T PRK14294 190 RGMGKVIVSPCKTCHGQGRVRVSKTVQV----KIPAGVDTGS 227 (366)
T ss_pred CCcCeecCcCCCCCCCceEeecceeEEE----ecCCCCcCCc
Confidence 9999998 999999999999888887 4555666554
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=2.8e-15 Score=135.26 Aligned_cols=101 Identities=30% Similarity=0.570 Sum_probs=88.3
Q ss_pred cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059 76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY 142 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~ 142 (185)
.++.|+.+.|.|+|+|+|+|.++ +.|..|+|+|. ..|+.|+|+|.+....+..+|+++.+.+|+.|.
T Consensus 117 ~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 196 (378)
T PRK14283 117 QRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQ 196 (378)
T ss_pred cCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCC
Confidence 47899999999999999999987 88999999987 679999999999888888889888889999999
Q ss_pred CCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059 143 GRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR 180 (185)
Q Consensus 143 G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~ 180 (185)
|+|+.+ |..|.|.|++.+.+.++. .|..+|++|.
T Consensus 197 G~G~~~~~~C~~C~G~g~v~~~~~l~V----~IppG~~~G~ 233 (378)
T PRK14283 197 GEGKIVEKPCSNCHGKGVVRETKTISV----KIPAGVETGS 233 (378)
T ss_pred ccceecCCCCCCCCCceeeccceeEEE----EECCCCCCCc
Confidence 999997 999999999998888776 4444455444
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=5.1e-15 Score=133.03 Aligned_cols=103 Identities=27% Similarity=0.468 Sum_probs=90.2
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-------eeCCCCCcccEEEEeeecCCCCceeeeecCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-------VLCDMCGGTGKWKALNRKRAKDVYEFTECPN 140 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~ 140 (185)
+.++.|+.+.+.|+|+|+|+|.++ ..|..|+|+|. ..|+.|+|+|.+....+..+|+++.+.+|+.
T Consensus 109 ~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 188 (371)
T PRK14292 109 PARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPT 188 (371)
T ss_pred ccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCC
Confidence 357899999999999999999887 88999999996 6799999999998877777888888999999
Q ss_pred CCCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 141 CYGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 141 C~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
|.|.|+.+ |+.|.|.|++.+.+.+++ .|..+|++|.-
T Consensus 189 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 228 (371)
T PRK14292 189 CRGEGQIITDPCTVCRGRGRTLKAETVKV----KLPRGIDEGYR 228 (371)
T ss_pred CcccceecCCCCCCCCCceEEeecceEEE----EECCCCCCCcE
Confidence 99999997 999999999998888877 55566666653
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=5.4e-15 Score=132.83 Aligned_cols=99 Identities=26% Similarity=0.512 Sum_probs=84.7
Q ss_pred ccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCc--eeeeecCCCC
Q 042059 77 LISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDV--YEFTECPNCY 142 (185)
Q Consensus 77 ~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~--~~~~~C~~C~ 142 (185)
++.|+.+.|.|+|+|+|.|.++ +.|..|+|+|. ..|+.|+|+|.+.... .+|++ +.+.+|+.|.
T Consensus 121 ~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~--~~g~~~~~~~~~C~~C~ 198 (365)
T PRK14290 121 IDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVR--GQGFFRMVTVTTCRTCG 198 (365)
T ss_pred CCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEe--ccCeEEEEEEEeCCCCC
Confidence 3789999999999999999987 88999999997 6899999999877754 35665 3568999999
Q ss_pred CCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 143 GRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 143 G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
|+|+++ |+.|+|.|++.+.+.+++ .|..+|.+|.-
T Consensus 199 G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~ 236 (365)
T PRK14290 199 GRGRIPEEKCPRCNGTGTVVVNEDISV----KIPKGATDNLR 236 (365)
T ss_pred CceeEccCCCCCCCCceeEEEeeEEEE----EECCCCCCCcE
Confidence 999997 999999999999998888 55666666653
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=7e-15 Score=132.94 Aligned_cols=98 Identities=28% Similarity=0.501 Sum_probs=84.7
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C 141 (185)
+.++.|+.+.|.|+|+|+|+|+++ +.|..|+|+|. ..|+.|+|+|.++.. .++++.+.+|+.|
T Consensus 126 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C 201 (382)
T PRK14291 126 PVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTC 201 (382)
T ss_pred ccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCC
Confidence 357899999999999999999987 88999999996 689999999987764 2667788999999
Q ss_pred CCCceEE--CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059 142 YGRGKLV--CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR 180 (185)
Q Consensus 142 ~G~G~~i--C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~ 180 (185)
+|+|.+. |+.|+|.|++.+++.+++ .|..+|.+|.
T Consensus 202 ~G~G~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~ 238 (382)
T PRK14291 202 GGEGVLREPCSKCNGRGLVIKKETIKV----RIPPGVDNGS 238 (382)
T ss_pred CCceEEccCCCCCCCCceEEeeeEEEE----EeCCCCCCCC
Confidence 9999654 999999999999999988 5556666664
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.5e-13 Score=120.82 Aligned_cols=101 Identities=24% Similarity=0.429 Sum_probs=89.4
Q ss_pred cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCce-eeeecCCCC
Q 042059 76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVY-EFTECPNCY 142 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~-~~~~C~~C~ 142 (185)
.+|.|+++.|+|+|+|+|+|.+. ..|..|+|.|. ..|+.|.|+|......+.++|+++ .+..|..|+
T Consensus 98 ~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~ 177 (337)
T KOG0712|consen 98 QRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCN 177 (337)
T ss_pred ccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCC
Confidence 45899999999999999999765 99999999998 679999999999999888988876 789999999
Q ss_pred CCceE-----ECCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059 143 GRGKL-----VCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR 180 (185)
Q Consensus 143 G~G~~-----iC~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~ 180 (185)
|.|.. .|+.|.|.+++.+++++++ .+...|-.++
T Consensus 178 G~G~~~~~kd~C~~C~G~~~v~~kkil~v----~V~~g~~~~~ 216 (337)
T KOG0712|consen 178 GSGETISLKDRCKTCSGAKVVREKKILEV----HVEPGMPHGQ 216 (337)
T ss_pred CccccccccccCcccccchhhhhhheeec----cccCCCcccc
Confidence 99998 3999999999999999988 5555555544
No 31
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.27 E-value=1.2e-11 Score=86.52 Aligned_cols=56 Identities=34% Similarity=0.869 Sum_probs=46.8
Q ss_pred cCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE----CCCCCCce
Q 042059 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV----CPVCLGTG 156 (185)
Q Consensus 101 C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i----C~~C~G~G 156 (185)
|+.|+|+|. .+|+.|+|+|+++...+..++.++.+++|+.|+|+|+++ |+.|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 789999998 799999999999998886777788999999999999997 99999975
No 32
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.12 E-value=3.9e-10 Score=87.18 Aligned_cols=58 Identities=34% Similarity=0.810 Sum_probs=51.3
Q ss_pred eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEECCCCCCceEEe
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPN 159 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~iC~~C~G~G~i~ 159 (185)
+.|..|+|+|...|+.|+|+|.+.... .+.++.+++|+.|.|.|+..|+.|+|.|++.
T Consensus 42 v~C~~C~GsG~~~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~ 99 (111)
T PLN03165 42 QPCFPCSGTGAQVCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSLTCTTCQGSGIQP 99 (111)
T ss_pred CCCCCCCCCCCcCCCCCcCcCeEEEEe---CCcEEEEEECCCCCCcceeeCCCCCCCEEEe
Confidence 899999999999999999999987532 2446688999999999999999999999883
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=5.2e-06 Score=74.83 Aligned_cols=66 Identities=33% Similarity=0.681 Sum_probs=42.2
Q ss_pred eecCCCCCccceeCCCCCcccEE--------EEeeecC-------------CCCceeeeecCCCCCCceEECCCCCCceE
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKW--------KALNRKR-------------AKDVYEFTECPNCYGRGKLVCPVCLGTGL 157 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~--------~~~~r~~-------------~G~~~~~~~C~~C~G~G~~iC~~C~G~G~ 157 (185)
..|..|.|.|...|+.|+|.|.- ......+ +.......+|++|.|+|++.|.+|.|+|.
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgs 267 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGS 267 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCccc
Confidence 67888888888888888888831 1111111 01112456788888888888888888877
Q ss_pred EeeeeEE
Q 042059 158 PNNKGLL 164 (185)
Q Consensus 158 i~~~k~L 164 (185)
..+-.++
T Consensus 268 ll~~t~~ 274 (406)
T KOG2813|consen 268 LLNYTRI 274 (406)
T ss_pred eeeeEEE
Confidence 6654433
No 34
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.63 E-value=3.5e-05 Score=74.05 Aligned_cols=64 Identities=34% Similarity=0.697 Sum_probs=48.0
Q ss_pred eecCCCCCccc-----eeCCCCCcccEEEEeeecC--------C-CCceeeeecCCCCCCceEE----CCCCCCceEEee
Q 042059 99 PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKR--------A-KDVYEFTECPNCYGRGKLV----CPVCLGTGLPNN 160 (185)
Q Consensus 99 ~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~--------~-G~~~~~~~C~~C~G~G~~i----C~~C~G~G~i~~ 160 (185)
..|+.|+|+|. ..|+.|+|+|+.-.....+ . +++....+|+.|.|+|.+. |+.|.|+|.+..
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 47999999998 6799999999973322111 1 1223467999999999986 999999998865
Q ss_pred ee
Q 042059 161 KG 162 (185)
Q Consensus 161 ~k 162 (185)
-+
T Consensus 83 c~ 84 (715)
T COG1107 83 CD 84 (715)
T ss_pred ec
Confidence 43
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=3e-05 Score=68.47 Aligned_cols=87 Identities=25% Similarity=0.489 Sum_probs=69.4
Q ss_pred cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059 76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY 142 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~ 142 (185)
..+.++.+.+.++|+++..|..+ ..|..|.|.|. ..|..|.|.|....... .++... +|..|.
T Consensus 135 ~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~f~~~-~~~~c~ 210 (288)
T KOG0715|consen 135 VPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKE---DPFILY-TCSYCL 210 (288)
T ss_pred ccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccccccc---CCccee-eccccc
Confidence 34458888899999999999954 89999999998 78999999996654322 333333 899999
Q ss_pred CCceEE---CCCCCCceEEeeeeEEec
Q 042059 143 GRGKLV---CPVCLGTGLPNNKGLLRR 166 (185)
Q Consensus 143 G~G~~i---C~~C~G~G~i~~~k~L~~ 166 (185)
|.|.+. |..|.|.|.+...+.+..
T Consensus 211 ~~~~~~~~~c~~~~g~~~v~~~k~i~i 237 (288)
T KOG0715|consen 211 GRGLVLRDNCQACSGAGQVRRAKDIMI 237 (288)
T ss_pred ccceeccchHHHhhcchhhhhheeEEe
Confidence 999998 999999998776665544
No 36
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.52 E-value=8.7e-05 Score=51.77 Aligned_cols=38 Identities=42% Similarity=0.920 Sum_probs=27.5
Q ss_pred eeeecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCc
Q 042059 97 ERPVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRG 145 (185)
Q Consensus 97 ~k~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G 145 (185)
....|+.|+|+|. ..|+.|+|+|+++ . ..+|+.|+|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~----------~~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E----------KDPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T----------SSB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C----------CCCCCCCCCcC
Confidence 3488999999997 5899999999986 2 26899999986
No 37
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=6e-05 Score=68.11 Aligned_cols=51 Identities=25% Similarity=0.501 Sum_probs=35.8
Q ss_pred eeCCCCCcccEEEEeeecCCC--------Cce-------------eeeecCCCCCCceEECCCCCCceEEee
Q 042059 110 VLCDMCGGTGKWKALNRKRAK--------DVY-------------EFTECPNCYGRGKLVCPVCLGTGLPNN 160 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~~G--------~~~-------------~~~~C~~C~G~G~~iC~~C~G~G~i~~ 160 (185)
..|..|.|+|.++.....+.| +|. ....|..|+|+|+..|++|+|.|.+.-
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C 259 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPC 259 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccc
Confidence 568899999987765444444 221 235677788888888999988887754
No 38
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00013 Score=66.73 Aligned_cols=56 Identities=36% Similarity=0.792 Sum_probs=40.6
Q ss_pred cceeeccccCCccccCCeeEEEEeeeehhcCCceeeecCCCCCccc-------------eeCCCCCcccEEEEeeecCCC
Q 042059 64 RRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGA-------------VLCDMCGGTGKWKALNRKRAK 130 (185)
Q Consensus 64 r~~c~~c~~~~~~~g~Di~~~l~Vslee~~~G~~k~~C~~C~GtG~-------------~~C~~C~GsG~~~~~~r~~~G 130 (185)
...|..|.|+-... |...+.|+.|+|+|. .+|+.|+|+|..+.
T Consensus 142 ~~~C~~C~GsGak~-----------------gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------- 197 (371)
T COG0484 142 SVTCSTCHGSGAKP-----------------GTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------- 197 (371)
T ss_pred eeECCcCCCCCCCC-----------------CCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC-------
Confidence 34788888872222 223388999999985 57999999988763
Q ss_pred CceeeeecCCCCCCceEE
Q 042059 131 DVYEFTECPNCYGRGKLV 148 (185)
Q Consensus 131 ~~~~~~~C~~C~G~G~~i 148 (185)
.+|..|+|.|++.
T Consensus 198 -----~pC~~C~G~G~v~ 210 (371)
T COG0484 198 -----DPCGKCKGKGRVK 210 (371)
T ss_pred -----CCCCCCCCCCeEe
Confidence 6799999998863
No 39
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.77 E-value=0.0012 Score=55.40 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=25.8
Q ss_pred eeeecCCCCCCceEE-----CCCCCCceEEeeeeEEec
Q 042059 134 EFTECPNCYGRGKLV-----CPVCLGTGLPNNKGLLRR 166 (185)
Q Consensus 134 ~~~~C~~C~G~G~~i-----C~~C~G~G~i~~~k~L~~ 166 (185)
...+|+.|+|+|+++ |+.|+|+|++..+..+.+
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~ 135 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLL 135 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEE
Confidence 457788888888776 888888888888776665
No 40
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.0027 Score=61.39 Aligned_cols=25 Identities=44% Similarity=0.918 Sum_probs=14.3
Q ss_pred eecCCCCCccc----eeCCCCCcccEEEE
Q 042059 99 PVCRNCGGSGA----VLCDMCGGTGKWKA 123 (185)
Q Consensus 99 ~~C~~C~GtG~----~~C~~C~GsG~~~~ 123 (185)
+.|..|+|+|. ..|+.|+|+|.+..
T Consensus 54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 54 IPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred CCCCeeccceeEEEEeecccCCCceeEEe
Confidence 45666666665 45666666665543
No 41
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.32 E-value=0.0027 Score=57.66 Aligned_cols=37 Identities=35% Similarity=0.917 Sum_probs=29.6
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|+.|+|+|. ..|+.|+|+|+.+. .+|..|.|+|.+
T Consensus 163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 210 (372)
T PRK14300 163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRY 210 (372)
T ss_pred ccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEE
Confidence 77888888886 36888888888753 568888888886
No 42
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.31 E-value=0.003 Score=57.46 Aligned_cols=37 Identities=43% Similarity=1.127 Sum_probs=31.1
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. .+|+.|+|+|..+. ..|+.|.|.|.+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 218 (372)
T PRK14296 167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKY 218 (372)
T ss_pred ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEE
Confidence 78999999986 27999999998764 569999999975
No 43
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.29 E-value=0.0031 Score=57.42 Aligned_cols=37 Identities=35% Similarity=0.944 Sum_probs=30.7
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. ..|+.|+|+|..+. ..|+.|.|+|.+
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 208 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRV 208 (378)
T ss_pred eecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeE
Confidence 78999999985 46999999998753 569999999976
No 44
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.26 E-value=0.0031 Score=57.71 Aligned_cols=38 Identities=39% Similarity=0.866 Sum_probs=32.2
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV 148 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i 148 (185)
..|..|+|+|. .+|+.|+|+|+.+. ..|..|.|.|.+.
T Consensus 191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~ 239 (392)
T PRK14279 191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEE
Confidence 78999999987 47999999998754 5699999999773
No 45
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0062 Score=53.97 Aligned_cols=51 Identities=33% Similarity=0.747 Sum_probs=42.3
Q ss_pred eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEECCCCC
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCL 153 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~iC~~C~ 153 (185)
-.|..|.|.+...|..|+|+=++... ........+|..|+-.|.+.|+.|.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~~----~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHEE----EEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeeee----ccCCCcEEECcccCCCCceeCCccC
Confidence 57999999999999999999887762 1223356899999999999999995
No 46
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.23 E-value=0.003 Score=57.50 Aligned_cols=38 Identities=39% Similarity=1.004 Sum_probs=30.6
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV 148 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i 148 (185)
..|+.|+|+|. ..|+.|+|+|..+. ..|+.|.|+|.+.
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~ 211 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVR 211 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEE
Confidence 77999999985 46999999998653 5699999999763
No 47
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.21 E-value=0.0042 Score=56.46 Aligned_cols=37 Identities=46% Similarity=1.169 Sum_probs=29.5
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|+.|+|+|. .+|+.|+|+|..+. ..|..|.|.|.+
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 217 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKV 217 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEE
Confidence 77999999985 36999999998653 569999998854
No 48
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.17 E-value=0.0034 Score=57.05 Aligned_cols=37 Identities=46% Similarity=1.144 Sum_probs=28.9
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. ..|+.|+|+|+.+. ..|+.|.|.|.+
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 209 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIV 209 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCcee
Confidence 67888888885 47888888888653 468888888876
No 49
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.16 E-value=0.0039 Score=56.68 Aligned_cols=38 Identities=37% Similarity=0.906 Sum_probs=30.0
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV 148 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i 148 (185)
..|..|+|+|. ..|+.|+|+|+.+. ..|..|.|.|.+.
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEe
Confidence 77888988885 46889999888753 4688898888763
No 50
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.10 E-value=0.0037 Score=56.66 Aligned_cols=37 Identities=41% Similarity=0.996 Sum_probs=30.5
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. ..|+.|+|+|..+. ..|..|.|+|.+
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 211 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSL 211 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEE
Confidence 77999999885 47999999998753 569999999976
No 51
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.09 E-value=0.005 Score=55.92 Aligned_cols=37 Identities=35% Similarity=0.915 Sum_probs=30.9
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. ..|+.|+|+|+.+. ..|..|.|.|.+
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 204 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYI 204 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceE
Confidence 77999999996 46999999998753 569999999876
No 52
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.07 E-value=0.0047 Score=56.52 Aligned_cols=37 Identities=35% Similarity=0.836 Sum_probs=30.6
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. .+|+.|+|+|..+. ..|..|.|.|.+
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~ 231 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRA 231 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceE
Confidence 78999999886 57999999998754 569999998876
No 53
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.06 E-value=0.0038 Score=57.04 Aligned_cols=37 Identities=41% Similarity=1.038 Sum_probs=28.9
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|+.|+|+|. ..|+.|+|+|..+. ..|+.|.|.|.+
T Consensus 176 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 223 (391)
T PRK14284 176 KVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRI 223 (391)
T ss_pred eecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCccee
Confidence 77888888886 47888888887643 468888888876
No 54
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.05 E-value=0.0048 Score=55.89 Aligned_cols=37 Identities=41% Similarity=1.014 Sum_probs=31.2
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|+.|+|+|. ..|+.|+|+|+.+. ..|..|.|.|.+
T Consensus 170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 221 (369)
T PRK14282 170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRI 221 (369)
T ss_pred cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeE
Confidence 78999999986 36999999998753 569999999965
No 55
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0044 Score=56.05 Aligned_cols=37 Identities=35% Similarity=0.934 Sum_probs=29.5
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. .+|+.|+|+|+.+. ..|..|.|+|.+
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 207 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRV 207 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceE
Confidence 67999999886 35999999988643 569999998876
No 56
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.03 E-value=0.0043 Score=56.37 Aligned_cols=37 Identities=46% Similarity=1.127 Sum_probs=27.7
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. ..|+.|+|+|..+. ..|+.|.|+|.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 212 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKV 212 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEE
Confidence 67888888874 36888888887643 458888888866
No 57
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.99 E-value=0.0047 Score=55.87 Aligned_cols=37 Identities=41% Similarity=1.036 Sum_probs=29.7
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|.|. ..|+.|+|+|+.+. ..|..|.|.|.+
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 209 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRV 209 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEe
Confidence 67889998886 47999999988643 569999988876
No 58
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.91 E-value=0.0046 Score=56.31 Aligned_cols=37 Identities=46% Similarity=0.977 Sum_probs=26.6
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|+.|+|+|. .+|+.|+|+|..+. ..|..|.|.|.+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~ 215 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHE 215 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEE
Confidence 67888888775 35888888887643 458888887765
No 59
>PRK14277 chaperone protein DnaJ; Provisional
Probab=95.90 E-value=0.0056 Score=55.84 Aligned_cols=37 Identities=38% Similarity=0.922 Sum_probs=31.1
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|.|. .+|+.|+|+|..+. ..|..|.|+|.+
T Consensus 173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 224 (386)
T PRK14277 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRI 224 (386)
T ss_pred ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEE
Confidence 78999999986 36999999998754 569999999986
No 60
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.90 E-value=0.0066 Score=54.91 Aligned_cols=37 Identities=38% Similarity=1.074 Sum_probs=30.5
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|+.|+|.|. ..|+.|+|.|+... ..|+.|.|+|.+
T Consensus 166 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 217 (365)
T PRK14290 166 ITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTV 217 (365)
T ss_pred ccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeE
Confidence 77999999984 47999999998643 579999999886
No 61
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=95.81 E-value=0.007 Score=56.18 Aligned_cols=39 Identities=36% Similarity=0.836 Sum_probs=29.0
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. .+|+.|+|+|+.+.. ...|..|.|+|.+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~v 220 (421)
T PTZ00037 167 VDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE----------SKKCKNCSGKGVK 220 (421)
T ss_pred ccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc----------cccCCcCCCccee
Confidence 67888888883 368888888876642 3568888888876
No 62
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.80 E-value=0.0066 Score=54.47 Aligned_cols=38 Identities=39% Similarity=1.056 Sum_probs=30.9
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV 148 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i 148 (185)
..|..|+|+|. ..|+.|+|+|+.+. ..|..|.|.|.+.
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~ 213 (354)
T TIGR02349 161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVK 213 (354)
T ss_pred ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEec
Confidence 77999999885 47999999998753 4699999999763
No 63
>PRK14281 chaperone protein DnaJ; Provisional
Probab=95.79 E-value=0.007 Score=55.44 Aligned_cols=38 Identities=42% Similarity=1.058 Sum_probs=30.9
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV 148 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i 148 (185)
..|..|+|.|. .+|+.|+|+|..+. ..|..|.|.|.+.
T Consensus 180 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~ 232 (397)
T PRK14281 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQ 232 (397)
T ss_pred ccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEe
Confidence 77999999985 46999999998754 5699999998873
No 64
>PRK14289 chaperone protein DnaJ; Provisional
Probab=95.73 E-value=0.0062 Score=55.45 Aligned_cols=37 Identities=38% Similarity=0.928 Sum_probs=27.7
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|.|. ..|+.|+|+|+.+. ..|..|.|+|.+
T Consensus 172 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 223 (386)
T PRK14289 172 ETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIV 223 (386)
T ss_pred CcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEE
Confidence 67888888876 25888888887643 458888888865
No 65
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.65 E-value=0.012 Score=45.69 Aligned_cols=26 Identities=35% Similarity=0.887 Sum_probs=22.2
Q ss_pred eecCCCCCccceeCCCCCcccEEEEe
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKWKAL 124 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~~~~ 124 (185)
..|+.|+|+|...|+.|.|+|.+..+
T Consensus 76 ~~C~~C~G~Gk~~C~~C~G~G~~~~~ 101 (111)
T PLN03165 76 SKCINCDGAGSLTCTTCQGSGIQPRY 101 (111)
T ss_pred EECCCCCCcceeeCCCCCCCEEEeee
Confidence 88999999998889999999986653
No 66
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.61 E-value=0.0092 Score=54.17 Aligned_cols=37 Identities=38% Similarity=0.930 Sum_probs=30.5
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. ..|+.|+|.|+.+. ..|..|.|+|.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 212 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVK 212 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCccc
Confidence 78999999986 36999999998753 569999999876
No 67
>PRK14287 chaperone protein DnaJ; Provisional
Probab=95.35 E-value=0.0098 Score=54.04 Aligned_cols=38 Identities=45% Similarity=1.059 Sum_probs=29.7
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV 148 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i 148 (185)
..|..|+|+|. ..|+.|+|+|.++. ..|..|.|.|.+.
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~ 208 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVR 208 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEe
Confidence 67889998885 46888999888653 5688898888764
No 68
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.26 E-value=0.013 Score=53.30 Aligned_cols=37 Identities=41% Similarity=1.022 Sum_probs=28.1
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|+.|+|+|. .+|+.|+|+|+.+. ..|..|.|+|.+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 215 (378)
T PRK14283 164 KTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVV 215 (378)
T ss_pred ccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceee
Confidence 67888888876 35888888887643 458888888876
No 69
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.11 E-value=0.018 Score=52.47 Aligned_cols=36 Identities=47% Similarity=1.123 Sum_probs=29.9
Q ss_pred eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|+.|+|+|. ..|+.|+|+|. +. ..|..|.|.|.+
T Consensus 174 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v 220 (382)
T PRK14291 174 KVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLV 220 (382)
T ss_pred ccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceE
Confidence 78999999986 47999999995 21 569999999976
No 70
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.08 E-value=0.025 Score=45.60 Aligned_cols=48 Identities=38% Similarity=0.780 Sum_probs=35.9
Q ss_pred eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEEC
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVC 149 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~iC 149 (185)
..|..|.|.+.+.|..|+|+=+++..... ......+|+.|+-.|.+.|
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~---~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSCKVFAENAT---AAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcceEEeccCc---ccccEEECCCCCccccccC
Confidence 57999999999999999999888653210 1123478888888887655
No 71
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.05 E-value=0.018 Score=52.19 Aligned_cols=37 Identities=38% Similarity=0.934 Sum_probs=27.6
Q ss_pred eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
..|..|+|+|. ..|+.|+|.|+.+. ..|..|.|+|.+
T Consensus 158 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 209 (371)
T PRK14292 158 KTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRT 209 (371)
T ss_pred ccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEE
Confidence 67888888875 25888888887643 568888888865
No 72
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.04 E-value=0.016 Score=48.71 Aligned_cols=25 Identities=40% Similarity=1.038 Sum_probs=13.3
Q ss_pred eecCCCCCccc-----eeCCCCCcccEEEE
Q 042059 99 PVCRNCGGSGA-----VLCDMCGGTGKWKA 123 (185)
Q Consensus 99 ~~C~~C~GtG~-----~~C~~C~GsG~~~~ 123 (185)
..|+.|+|+|. ..|+.|+|+|++..
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 55555555555 13555555555443
No 73
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.91 E-value=0.29 Score=44.61 Aligned_cols=23 Identities=39% Similarity=0.918 Sum_probs=15.3
Q ss_pred eecCCCCCccce-----eCCCCCcccEE
Q 042059 99 PVCRNCGGSGAV-----LCDMCGGTGKW 121 (185)
Q Consensus 99 ~~C~~C~GtG~~-----~C~~C~GsG~~ 121 (185)
..|..|+|+|.. .|+.|+|++++
T Consensus 171 ~~C~~C~G~G~~~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 171 LVCDSCNGSGETISLKDRCKTCSGAKVV 198 (337)
T ss_pred eEeccCCCccccccccccCcccccchhh
Confidence 667777777664 66677766664
No 74
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=86.31 E-value=0.82 Score=34.81 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCceEECCCCCCceEEeeeeEEecC-Ch-hhhhhhccCccccC
Q 042059 143 GRGKLVCPVCLGTGLPNNKGLLRRP-DA-RKLLDKMYNGRLLP 183 (185)
Q Consensus 143 G~G~~iC~~C~G~G~i~~~k~L~~p-~~-~~~~~~m~~g~l~~ 183 (185)
|.+.+.|+.|. ..+......|.-| |+ -+|+|+.+.|+|-+
T Consensus 39 ~~~h~~C~~CG-~y~~~~V~~l~epIDVY~~wiD~~~eg~i~~ 80 (99)
T PRK14892 39 NIAIITCGNCG-LYTEFEVPSVYDEVDVYNKFIDLYLEGKIEI 80 (99)
T ss_pred CcceEECCCCC-CccCEECCccccchhhHHHHHHHHHhcCCCc
Confidence 45666799995 4444444555555 66 68999999999976
No 75
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=71.80 E-value=5.4 Score=32.06 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=14.1
Q ss_pred ecCCCCCCceEECCCCCCceEEe
Q 042059 137 ECPNCYGRGKLVCPVCLGTGLPN 159 (185)
Q Consensus 137 ~C~~C~G~G~~iC~~C~G~G~i~ 159 (185)
.|..|+|.+.+.|..|+|...+.
T Consensus 101 ~C~~Cgg~rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 101 VCEGCGGARFVPCSECNGSCKVF 123 (147)
T ss_pred CCCCCCCcCeEECCCCCCcceEE
Confidence 46666666666666666665443
No 76
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.15 E-value=3.1 Score=42.51 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=8.8
Q ss_pred CCCCCCceEEeee
Q 042059 149 CPVCLGTGLPNNK 161 (185)
Q Consensus 149 C~~C~G~G~i~~~ 161 (185)
|+.|+|+.+..+.
T Consensus 762 C~~C~G~R~~~e~ 774 (924)
T TIGR00630 762 CEVCKGKRYNRET 774 (924)
T ss_pred CCCcCCceeChHH
Confidence 7777777766553
No 77
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.88 E-value=3.5 Score=42.17 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=25.7
Q ss_pred eeCCCCCcccEEEEeeecCCCCc-eeeeecCCCCCCceEE
Q 042059 110 VLCDMCGGTGKWKALNRKRAKDV-YEFTECPNCYGRGKLV 148 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~~G~~-~~~~~C~~C~G~G~~i 148 (185)
-.|+.|.|.|++.... +++ ....+|+.|+|++...
T Consensus 737 G~C~~C~G~G~~~~~~----~f~~~~~~~C~~C~G~R~~~ 772 (924)
T TIGR00630 737 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCKGKRYNR 772 (924)
T ss_pred CCCCCCccceEEEEEc----cCCCCcccCCCCcCCceeCh
Confidence 4699999999987632 222 2468999999998653
No 78
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=64.36 E-value=2 Score=32.29 Aligned_cols=37 Identities=32% Similarity=0.703 Sum_probs=18.0
Q ss_pred eeCCCCCcccEEEEeeecCCC-CceeeeecCCCCCCce
Q 042059 110 VLCDMCGGTGKWKALNRKRAK-DVYEFTECPNCYGRGK 146 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~~G-~~~~~~~C~~C~G~G~ 146 (185)
..|..|+|.|......+.... .+.....|..|+|+|.
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~ 43 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGY 43 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCC
Confidence 457778888855443322221 1223345555555443
No 79
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=61.29 E-value=6.4 Score=40.42 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=22.9
Q ss_pred eeecCCCCCCceEE------------CCCCCCceEEeeeeEEe
Q 042059 135 FTECPNCYGRGKLV------------CPVCLGTGLPNNKGLLR 165 (185)
Q Consensus 135 ~~~C~~C~G~G~~i------------C~~C~G~G~i~~~k~L~ 165 (185)
.-.|+.|.|.|.+. |+.|+|+.+..+.-.+.
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~ 780 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVK 780 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCccccccceEEE
Confidence 34588888888764 99999998887654443
No 80
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=59.87 E-value=7.5 Score=39.96 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=24.9
Q ss_pred eeCCCCCcccEEEEeeecCCCCc-eeeeecCCCCCCceE
Q 042059 110 VLCDMCGGTGKWKALNRKRAKDV-YEFTECPNCYGRGKL 147 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~~G~~-~~~~~C~~C~G~G~~ 147 (185)
-.|+.|.|.|.+.... .++ ....+|+.|+|+...
T Consensus 739 G~C~~C~G~G~~~~~~----~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 739 GRCEACQGDGVIKIEM----HFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCcccccceEEEEe----ccCCCccccCccccCcccc
Confidence 4699999999987632 222 245799999999765
No 81
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=59.16 E-value=8.5 Score=33.99 Aligned_cols=23 Identities=22% Similarity=-0.006 Sum_probs=21.0
Q ss_pred cccCCeeEEEEeeeehhcCCcee
Q 042059 76 ALISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k 98 (185)
.++.|+.+.+.|+|+|+|.|..+
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k 137 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKR 137 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceE
Confidence 46899999999999999999976
No 82
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=58.20 E-value=4.6 Score=35.29 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=19.8
Q ss_pred eeeecCCCCCCceEECCCCCCceEEee
Q 042059 134 EFTECPNCYGRGKLVCPVCLGTGLPNN 160 (185)
Q Consensus 134 ~~~~C~~C~G~G~~iC~~C~G~G~i~~ 160 (185)
.+.++-.-.|++.+.||+|+|+|++..
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCc
Confidence 345666677777788888888888753
No 83
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=56.43 E-value=7.7 Score=42.54 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=8.5
Q ss_pred eCCCCCcccEEEE
Q 042059 111 LCDMCGGTGKWKA 123 (185)
Q Consensus 111 ~C~~C~GsG~~~~ 123 (185)
+|+.|.|.|.+..
T Consensus 1609 rC~~C~G~G~i~i 1621 (1809)
T PRK00635 1609 QCSDCWGLGYQWI 1621 (1809)
T ss_pred CCCCCccCceEEE
Confidence 4777777776554
No 84
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=54.98 E-value=21 Score=23.55 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=10.3
Q ss_pred eeCCCCCcccEEEE
Q 042059 110 VLCDMCGGTGKWKA 123 (185)
Q Consensus 110 ~~C~~C~GsG~~~~ 123 (185)
..||.|+|....+.
T Consensus 2 kPCPfCGg~~~~~~ 15 (53)
T TIGR03655 2 KPCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCCcceeeE
Confidence 36899999888443
No 85
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.13 E-value=11 Score=33.71 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=21.2
Q ss_pred eecCCCCCCceEECCCCCCceEEee
Q 042059 136 TECPNCYGRGKLVCPVCLGTGLPNN 160 (185)
Q Consensus 136 ~~C~~C~G~G~~iC~~C~G~G~i~~ 160 (185)
..|..|+|.+.+.|..|+|...+.+
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~ 254 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHE 254 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeee
Confidence 6799999999999999999877655
No 86
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=52.53 E-value=7.6 Score=33.97 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=14.0
Q ss_pred CCCCccceeCCCCCcccEEEE
Q 042059 103 NCGGSGAVLCDMCGGTGKWKA 123 (185)
Q Consensus 103 ~C~GtG~~~C~~C~GsG~~~~ 123 (185)
.-.|.+.++||.|+|+|++-.
T Consensus 32 e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 32 EFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred cccCCCCCcCCCCcCCccCCc
Confidence 344555577888888887654
No 87
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=48.24 E-value=17 Score=37.31 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=8.4
Q ss_pred CCCCCCceEEeee
Q 042059 149 CPVCLGTGLPNNK 161 (185)
Q Consensus 149 C~~C~G~G~i~~~ 161 (185)
|..|+|+.+-.++
T Consensus 756 CevC~GkRYn~Et 768 (935)
T COG0178 756 CEVCHGKRYNRET 768 (935)
T ss_pred CCCcCCcccccce
Confidence 7777777666543
No 88
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=45.98 E-value=9 Score=42.07 Aligned_cols=27 Identities=30% Similarity=0.773 Sum_probs=23.0
Q ss_pred eeecCCCCCCceEE------------CCCCCCceEEeee
Q 042059 135 FTECPNCYGRGKLV------------CPVCLGTGLPNNK 161 (185)
Q Consensus 135 ~~~C~~C~G~G~~i------------C~~C~G~G~i~~~ 161 (185)
.-.|+.|.|.|.+. |+.|+|+.+..+.
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 56799999999874 9999999887654
No 89
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=45.37 E-value=28 Score=34.98 Aligned_cols=47 Identities=23% Similarity=0.527 Sum_probs=34.4
Q ss_pred eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE--CCCCCCc
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV--CPVCLGT 155 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i--C~~C~G~ 155 (185)
..|..|.-. ..|+.|...=..... ...-.|..|+-...+. |+.|.+.
T Consensus 436 l~C~~Cg~v--~~Cp~Cd~~lt~H~~--------~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYI--AECPNCDSPLTLHKA--------TGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCc--ccCCCCCcceEEecC--------CCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 889999433 789999987333321 2467899998875554 9999887
No 90
>PRK14299 chaperone protein DnaJ; Provisional
Probab=45.30 E-value=14 Score=32.41 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=21.3
Q ss_pred cccCCeeEEEEeeeehhcCCcee
Q 042059 76 ALISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 76 ~~g~Di~~~l~Vslee~~~G~~k 98 (185)
..|.|+.+.+.|+|+|+|.|+++
T Consensus 127 ~~g~dl~~~l~isL~ea~~G~~~ 149 (291)
T PRK14299 127 RKGRDLEAELPLTLEEAYRGGEK 149 (291)
T ss_pred CCCCCEEEEEEecHHHHhCCCeE
Confidence 46889999999999999999987
No 91
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=44.96 E-value=19 Score=37.03 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=24.2
Q ss_pred eeCCCCCcccEEEEeeecCCCCc-eeeeecCCCCCCce
Q 042059 110 VLCDMCGGTGKWKALNRKRAKDV-YEFTECPNCYGRGK 146 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~~G~~-~~~~~C~~C~G~G~ 146 (185)
-+|..|.|.|.+.... .++ ....+|+.|+|+.+
T Consensus 731 GRCe~C~GdG~ikIeM----~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEe----ccCCCceeeCCCcCCccc
Confidence 4799999999877642 222 24689999999865
No 92
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=44.78 E-value=48 Score=22.83 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=9.7
Q ss_pred CCCCCCceEEeee
Q 042059 149 CPVCLGTGLPNNK 161 (185)
Q Consensus 149 C~~C~G~G~i~~~ 161 (185)
|+.|+-...+..+
T Consensus 31 CpKCK~EtlI~v~ 43 (55)
T PF14205_consen 31 CPKCKQETLIDVK 43 (55)
T ss_pred CCCCCceEEEEee
Confidence 8888877776654
No 93
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.86 E-value=8.5 Score=34.11 Aligned_cols=42 Identities=33% Similarity=0.882 Sum_probs=28.5
Q ss_pred CCceeeecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059 94 DGKERPVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 94 ~G~~k~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~ 147 (185)
.|..+..|..|.|.|. .+|..|+|.|.+.. ..|..|.|.|.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v 229 (288)
T KOG0715|consen 177 EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQV 229 (288)
T ss_pred cccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhh
Confidence 3344477888888882 34888888887765 227788888744
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.64 E-value=27 Score=33.14 Aligned_cols=48 Identities=23% Similarity=0.532 Sum_probs=32.6
Q ss_pred eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE--CCCCCCce
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV--CPVCLGTG 156 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i--C~~C~G~G 156 (185)
..|..|.-. ..|+.|.+.=..... ...-.|..|+-.-... |+.|.+..
T Consensus 214 ~~C~~Cg~~--~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 214 LLCRSCGYI--LCCPNCDVSLTYHKK--------EGKLRCHYCGYQEPIPKTCPQCGSED 263 (505)
T ss_pred eEhhhCcCc--cCCCCCCCceEEecC--------CCeEEcCCCcCcCCCCCCCCCCCCCe
Confidence 678888533 789999875332221 1357899997666544 99998763
No 95
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=43.25 E-value=39 Score=21.09 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=18.9
Q ss_pred eCCCCCcccEEEEeeecCCC--CceeeeecCCCC
Q 042059 111 LCDMCGGTGKWKALNRKRAK--DVYEFTECPNCY 142 (185)
Q Consensus 111 ~C~~C~GsG~~~~~~r~~~G--~~~~~~~C~~C~ 142 (185)
.|+.|+....+....++... .+.....|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 68889888877665555443 344566787774
No 96
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=43.16 E-value=47 Score=20.84 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=19.6
Q ss_pred eCCCCCcccEEEEeeecCCC--CceeeeecCCCC
Q 042059 111 LCDMCGGTGKWKALNRKRAK--DVYEFTECPNCY 142 (185)
Q Consensus 111 ~C~~C~GsG~~~~~~r~~~G--~~~~~~~C~~C~ 142 (185)
.|+.|+....+....++... .+.....|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 58889877776654444332 344566777774
No 97
>PRK04023 DNA polymerase II large subunit; Validated
Probab=40.23 E-value=25 Score=36.79 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=35.0
Q ss_pred eecCCCCCccc-eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCce-EECCCCCCceEEeeeeE
Q 042059 99 PVCRNCGGSGA-VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGK-LVCPVCLGTGLPNNKGL 163 (185)
Q Consensus 99 ~~C~~C~GtG~-~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~-~iC~~C~G~G~i~~~k~ 163 (185)
..|+.|.-.+. ..|+.|+..-. ....|+.|.-... ..|+.|.-.-.......
T Consensus 627 RfCpsCG~~t~~frCP~CG~~Te-------------~i~fCP~CG~~~~~y~CPKCG~El~~~s~~~ 680 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTHTE-------------PVYRCPRCGIEVEEDECEKCGREPTPYSKRK 680 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCCCC-------------cceeCccccCcCCCCcCCCCCCCCCccceEE
Confidence 89999976655 78999988711 1257999965554 34999976644444433
No 98
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=39.21 E-value=35 Score=21.39 Aligned_cols=10 Identities=70% Similarity=1.580 Sum_probs=7.1
Q ss_pred CCceEECCCC
Q 042059 143 GRGKLVCPVC 152 (185)
Q Consensus 143 G~G~~iC~~C 152 (185)
.+|..+|+.|
T Consensus 16 ~~g~~vC~~C 25 (43)
T PF08271_consen 16 ERGELVCPNC 25 (43)
T ss_dssp TTTEEEETTT
T ss_pred CCCeEECCCC
Confidence 4566678888
No 99
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=36.92 E-value=28 Score=24.61 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=18.6
Q ss_pred EEEeeeehhcCCceeeecCCCC
Q 042059 84 LVSVPEAIALDGKERPVCRNCG 105 (185)
Q Consensus 84 ~l~Vslee~~~G~~k~~C~~C~ 105 (185)
.+.|+|+++.+|.....|+.|.
T Consensus 30 RFeIsLeDl~~GE~VArCPSCS 51 (67)
T COG5216 30 RFEISLEDLRNGEVVARCPSCS 51 (67)
T ss_pred EeEEEHHHhhCCceEEEcCCce
Confidence 5678999999999888888874
No 100
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=35.96 E-value=47 Score=19.97 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=5.3
Q ss_pred eCCCCCcccE
Q 042059 111 LCDMCGGTGK 120 (185)
Q Consensus 111 ~C~~C~GsG~ 120 (185)
.|+.|+..-.
T Consensus 4 ~CP~C~~~~~ 13 (38)
T TIGR02098 4 QCPNCKTSFR 13 (38)
T ss_pred ECCCCCCEEE
Confidence 4566655533
No 101
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=35.75 E-value=23 Score=22.90 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=24.0
Q ss_pred eeecCCCCCCceEE--CCCCCCceEEeeeeEEecCChhhhhhh
Q 042059 135 FTECPNCYGRGKLV--CPVCLGTGLPNNKGLLRRPDARKLLDK 175 (185)
Q Consensus 135 ~~~C~~C~G~G~~i--C~~C~G~G~i~~~k~L~~p~~~~~~~~ 175 (185)
...|..|.+.|... |+. ..+.+.+.||.....|+.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~------~~~r~y~~RpSrtq~l~~ 40 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN------KNERKYTSRPSRTQQLKN 40 (42)
T ss_pred CCcCcccCCCCcchhhCCC------CCCcccccCCCHHHHhhc
Confidence 35688888888766 876 344566788877666643
No 102
>PF14353 CpXC: CpXC protein
Probab=34.68 E-value=47 Score=25.29 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=21.2
Q ss_pred eeCCCCCcccEEEEeeecC------------CCCceeeeecCCCCCCceE
Q 042059 110 VLCDMCGGTGKWKALNRKR------------AKDVYEFTECPNCYGRGKL 147 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~------------~G~~~~~~~C~~C~G~G~~ 147 (185)
.+|+.|+..+......... .|.+ ...+||.|+..+.+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l-~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSL-FSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCc-CEEECCCCCCceec
Confidence 4788888888754432211 1111 45677777666554
No 103
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=32.73 E-value=66 Score=27.04 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=24.2
Q ss_pred eCCCCCcccEEEEeeec-C--CCCc-eeeeecCCCCCCceEE
Q 042059 111 LCDMCGGTGKWKALNRK-R--AKDV-YEFTECPNCYGRGKLV 148 (185)
Q Consensus 111 ~C~~C~GsG~~~~~~r~-~--~G~~-~~~~~C~~C~G~G~~i 148 (185)
.|+.|++.|......-. . |+.+ .....|+.|+=+-..+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev 43 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDV 43 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCcccee
Confidence 58899888876443322 2 3333 3678899997765443
No 104
>PRK05580 primosome assembly protein PriA; Validated
Probab=32.16 E-value=49 Score=32.59 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=32.2
Q ss_pred eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE--CCCCCCce
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV--CPVCLGTG 156 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i--C~~C~G~G 156 (185)
..|..|.-. ..|+.|.+. ..... ....-.|..|+-+-... |+.|.+..
T Consensus 382 ~~C~~Cg~~--~~C~~C~~~-l~~h~-------~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 382 LLCRDCGWV--AECPHCDAS-LTLHR-------FQRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred eEhhhCcCc--cCCCCCCCc-eeEEC-------CCCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 678888533 689999984 22221 12456899998775543 99998763
No 105
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.72 E-value=55 Score=32.46 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=32.4
Q ss_pred eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE-ECCCCCCce
Q 042059 99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL-VCPVCLGTG 156 (185)
Q Consensus 99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~-iC~~C~G~G 156 (185)
..|..|.-. ..|+.|++.=..... ...-.|..|+-.-.- .|+.|.+..
T Consensus 384 l~C~~Cg~~--~~C~~C~~~L~~h~~--------~~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 384 LACARCRTP--ARCRHCTGPLGLPSA--------GGTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred eEhhhCcCe--eECCCCCCceeEecC--------CCeeECCCCcCCCcCccCCCCcCCc
Confidence 789999433 789999987443221 135679999765321 299998763
No 106
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=31.32 E-value=67 Score=25.25 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=39.2
Q ss_pred cccccceeeccccCCccccCCeeEEEEeeeehhcCCcee---eecCCCCCccc-eeCCCCCcccEEEEeeecCCCC-ce-
Q 042059 60 VLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKER---PVCRNCGGSGA-VLCDMCGGTGKWKALNRKRAKD-VY- 133 (185)
Q Consensus 60 ~~~sr~~c~~c~~~~~~~g~Di~~~l~Vslee~~~G~~k---~~C~~C~GtG~-~~C~~C~GsG~~~~~~r~~~G~-~~- 133 (185)
.+.+...|..|--.-+..--+..+...+++.+.+.-... ..=..+.|.-. .+|+.|+-.++...+.++..-. .|
T Consensus 21 ~~~~~~~C~~Ck~~~~v~~~~~~~v~~~~~~~~~~~A~~~~ve~~~~~~ga~I~~kCpkCghe~m~Y~T~QlRSADEGQT 100 (116)
T KOG2907|consen 21 SAQSTVLCIRCKIEYPVSQFSGLVVETKSLFDEFTSALAEKVENESSADGAVIKHKCPKCGHEEMSYHTLQLRSADEGQT 100 (116)
T ss_pred cccCceEeccccccCCHHHhCCeeEEEEEeecccchhhhhhhcccccccccchhccCcccCCchhhhhhhhcccccCCce
Confidence 344555588887664443333333333333333322211 11122333322 7899998888776654433322 11
Q ss_pred eeeecCCC
Q 042059 134 EFTECPNC 141 (185)
Q Consensus 134 ~~~~C~~C 141 (185)
...+|+.|
T Consensus 101 VFYTC~kC 108 (116)
T KOG2907|consen 101 VFYTCPKC 108 (116)
T ss_pred EEEEcCcc
Confidence 34456555
No 107
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=30.08 E-value=79 Score=25.75 Aligned_cols=38 Identities=32% Similarity=0.523 Sum_probs=22.9
Q ss_pred eCCCCCcccEEEEeeec--CCCCc-eeeeecCCCCCCceEE
Q 042059 111 LCDMCGGTGKWKALNRK--RAKDV-YEFTECPNCYGRGKLV 148 (185)
Q Consensus 111 ~C~~C~GsG~~~~~~r~--~~G~~-~~~~~C~~C~G~G~~i 148 (185)
.|+.|+..|......-. .|+.+ .+...|+.|+=+-..+
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev 42 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNEV 42 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccceE
Confidence 58889888874332211 22332 3678899997765443
No 108
>PRK05978 hypothetical protein; Provisional
Probab=28.98 E-value=26 Score=28.48 Aligned_cols=8 Identities=25% Similarity=0.958 Sum_probs=3.9
Q ss_pred eeeecCCC
Q 042059 134 EFTECPNC 141 (185)
Q Consensus 134 ~~~~C~~C 141 (185)
....|+.|
T Consensus 51 v~~~C~~C 58 (148)
T PRK05978 51 PVDHCAAC 58 (148)
T ss_pred cCCCcccc
Confidence 34445555
No 109
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=28.67 E-value=74 Score=20.96 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=9.1
Q ss_pred eeCCCCCcccEEEEe
Q 042059 110 VLCDMCGGTGKWKAL 124 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~ 124 (185)
..||.| |...+...
T Consensus 4 kPCPFC-G~~~~~~~ 17 (61)
T PF14354_consen 4 KPCPFC-GSADVLIR 17 (61)
T ss_pred cCCCCC-CCcceEee
Confidence 468899 66655543
No 110
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=28.62 E-value=78 Score=25.97 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCCCCcccEEEEee--ec-CCCCc-eeeeecCCCCCCceE
Q 042059 112 CDMCGGTGKWKALN--RK-RAKDV-YEFTECPNCYGRGKL 147 (185)
Q Consensus 112 C~~C~GsG~~~~~~--r~-~~G~~-~~~~~C~~C~G~G~~ 147 (185)
|+.|++.+...... .. .|+.+ .+...|+.|+=+-..
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~e 40 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRSTD 40 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCchhh
Confidence 88898876554322 11 23332 367889999766443
No 111
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=28.17 E-value=25 Score=24.75 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=16.6
Q ss_pred CeeEEEEeeeehhcCCcee
Q 042059 80 NSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 80 Di~~~l~Vslee~~~G~~k 98 (185)
|+..++.|+|.||+.|.++
T Consensus 1 DL~~~~~I~l~~al~G~~i 19 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTI 19 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEE
T ss_pred CeEEEEEeCHHHHhCCCEE
Confidence 6788999999999999987
No 112
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=27.92 E-value=46 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=6.1
Q ss_pred eCCCCCcccEE
Q 042059 111 LCDMCGGTGKW 121 (185)
Q Consensus 111 ~C~~C~GsG~~ 121 (185)
+|+.|+..-.+
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 46666655443
No 113
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=27.75 E-value=31 Score=25.09 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=18.2
Q ss_pred CCCceEECCCCCCceEEeeeeEEecC-Ch-hhhhhhccCc
Q 042059 142 YGRGKLVCPVCLGTGLPNNKGLLRRP-DA-RKLLDKMYNG 179 (185)
Q Consensus 142 ~G~G~~iC~~C~G~G~i~~~k~L~~p-~~-~~~~~~m~~g 179 (185)
.|.|.+.|..|. ..+...-..|.-| |+ .+|+|..+.|
T Consensus 42 ~~~~~~~C~~Cg-~~~~~~i~~L~epiDVY~~wiD~~~~~ 80 (81)
T PF05129_consen 42 EGIGILSCRVCG-ESFQTKINPLSEPIDVYSEWIDACEEG 80 (81)
T ss_dssp TTEEEEEESSS---EEEEE--SS--TTHHHHHHHHHHH--
T ss_pred CCEEEEEecCCC-CeEEEccCccCcccchhHHHHHHHHhc
Confidence 466677799994 4444444445444 55 5677765543
No 114
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.03 E-value=63 Score=34.70 Aligned_cols=52 Identities=27% Similarity=0.614 Sum_probs=34.3
Q ss_pred eecCCCCCccc-eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCC------ceEECCCCCCceEEeeeeE
Q 042059 99 PVCRNCGGSGA-VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGR------GKLVCPVCLGTGLPNNKGL 163 (185)
Q Consensus 99 ~~C~~C~GtG~-~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~------G~~iC~~C~G~G~i~~~k~ 163 (185)
..|+.|..... ..|+.|+..-.. ...|+.|+.. +...|+.|...-....++.
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~-------------vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~ 726 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEP-------------VYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRT 726 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCC-------------ceeCccCCCccCCCccccccCCCCCCcccccceEE
Confidence 88999976544 689999877311 2479999773 2335999976544444433
No 115
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=26.29 E-value=97 Score=25.16 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=20.0
Q ss_pred eeCCCCCcccEEEEeeec--CCCCc-eeeeecCCCCCCceEE
Q 042059 110 VLCDMCGGTGKWKALNRK--RAKDV-YEFTECPNCYGRGKLV 148 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~--~~G~~-~~~~~C~~C~G~G~~i 148 (185)
..|+.|+..|........ .|+.+ .+...|+.|+=+-..+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev 43 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNNEV 43 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEEEE
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEeeeE
Confidence 368999999975442211 22322 3667899886554443
No 116
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=26.06 E-value=1.2e+02 Score=22.98 Aligned_cols=19 Identities=32% Similarity=0.747 Sum_probs=9.4
Q ss_pred eeecCCCCCCceEE------CCCCC
Q 042059 135 FTECPNCYGRGKLV------CPVCL 153 (185)
Q Consensus 135 ~~~C~~C~G~G~~i------C~~C~ 153 (185)
...|..|+++|+.. |..|.
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~ 59 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCG 59 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCC
Confidence 34455555444432 66664
No 117
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=25.80 E-value=85 Score=19.09 Aligned_cols=11 Identities=45% Similarity=1.078 Sum_probs=6.3
Q ss_pred eCCCCCcccEE
Q 042059 111 LCDMCGGTGKW 121 (185)
Q Consensus 111 ~C~~C~GsG~~ 121 (185)
.|..|++.|.+
T Consensus 5 ~C~~C~~~~i~ 15 (33)
T PF08792_consen 5 KCSKCGGNGIV 15 (33)
T ss_pred EcCCCCCCeEE
Confidence 45556666654
No 118
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=25.35 E-value=38 Score=23.55 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=6.3
Q ss_pred hhcCCcee-eecCCCCCccc
Q 042059 91 IALDGKER-PVCRNCGGSGA 109 (185)
Q Consensus 91 e~~~G~~k-~~C~~C~GtG~ 109 (185)
+-|.+... +.|.+|+.+..
T Consensus 22 ~~Y~~~~v~IlCNDC~~~s~ 41 (61)
T PF14599_consen 22 EEYRNKKVWILCNDCNAKSE 41 (61)
T ss_dssp ------EEEEEESSS--EEE
T ss_pred HHHhCCEEEEECCCCCCccc
Confidence 33555433 66776665543
No 119
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=24.37 E-value=58 Score=28.87 Aligned_cols=25 Identities=36% Similarity=0.767 Sum_probs=14.2
Q ss_pred CCceEECCCCCCceEEeeeeE-EecCChh
Q 042059 143 GRGKLVCPVCLGTGLPNNKGL-LRRPDAR 170 (185)
Q Consensus 143 G~G~~iC~~C~G~G~i~~~k~-L~~p~~~ 170 (185)
.+|.++|..| |++.++.+ ...|+-+
T Consensus 27 ~~Ge~vC~~C---G~Vl~e~~iD~g~EWR 52 (310)
T PRK00423 27 ERGEIVCADC---GLVIEENIIDQGPEWR 52 (310)
T ss_pred CCCeEeeccc---CCcccccccccCCCcc
Confidence 3577778888 45554443 3444433
No 120
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=24.00 E-value=55 Score=20.59 Aligned_cols=12 Identities=33% Similarity=0.988 Sum_probs=7.4
Q ss_pred eeCCCCCcccEE
Q 042059 110 VLCDMCGGTGKW 121 (185)
Q Consensus 110 ~~C~~C~GsG~~ 121 (185)
..|+.|.|+...
T Consensus 4 ~pCP~CGG~DrF 15 (37)
T smart00778 4 GPCPNCGGSDRF 15 (37)
T ss_pred cCCCCCCCcccc
Confidence 357777776553
No 121
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=23.97 E-value=44 Score=21.33 Aligned_cols=13 Identities=31% Similarity=1.066 Sum_probs=6.5
Q ss_pred eeCCCCCcccEEE
Q 042059 110 VLCDMCGGTGKWK 122 (185)
Q Consensus 110 ~~C~~C~GsG~~~ 122 (185)
..|+.|.|+....
T Consensus 4 ~pCP~CGG~DrFr 16 (40)
T PF08273_consen 4 GPCPICGGKDRFR 16 (40)
T ss_dssp E--TTTT-TTTEE
T ss_pred CCCCCCcCccccc
Confidence 4577787776544
No 122
>PHA02998 RNA polymerase subunit; Provisional
Probab=23.71 E-value=1.2e+02 Score=25.85 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=20.7
Q ss_pred eeCCCCCcccEEEEeeecCCC--CceeeeecCCCC
Q 042059 110 VLCDMCGGTGKWKALNRKRAK--DVYEFTECPNCY 142 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~~G--~~~~~~~C~~C~ 142 (185)
..|+.|++........|+... ++.....|..|+
T Consensus 144 v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG 178 (195)
T PHA02998 144 TPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCK 178 (195)
T ss_pred CCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCC
Confidence 568888887776555555443 244556777774
No 123
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.17 E-value=47 Score=23.68 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=18.1
Q ss_pred EEeeeehhcCCceeeecCCCC
Q 042059 85 VSVPEAIALDGKERPVCRNCG 105 (185)
Q Consensus 85 l~Vslee~~~G~~k~~C~~C~ 105 (185)
..|+++++.+|-.+..|+.|.
T Consensus 31 f~It~edL~~ge~Va~CpsCS 51 (67)
T KOG2923|consen 31 FQITLEDLENGEDVARCPSCS 51 (67)
T ss_pred eeecHHHHhCCCeeecCCCce
Confidence 678999999999888888874
No 124
>PF14369 zf-RING_3: zinc-finger
Probab=23.02 E-value=70 Score=19.64 Aligned_cols=9 Identities=56% Similarity=1.483 Sum_probs=4.4
Q ss_pred CCCCCCceEE
Q 042059 149 CPVCLGTGLP 158 (185)
Q Consensus 149 C~~C~G~G~i 158 (185)
||.|.| |++
T Consensus 24 CP~C~~-gFv 32 (35)
T PF14369_consen 24 CPRCHG-GFV 32 (35)
T ss_pred CcCCCC-cEe
Confidence 555543 444
No 125
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=21.03 E-value=1.2e+02 Score=28.33 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=25.9
Q ss_pred CCCCCCc-eEEeeeeEEecCChhhhhhhccCcccc
Q 042059 149 CPVCLGT-GLPNNKGLLRRPDARKLLDKMYNGRLL 182 (185)
Q Consensus 149 C~~C~G~-G~i~~~k~L~~p~~~~~~~~m~~g~l~ 182 (185)
|+.|... .+++.-.+++.|+-.-|..-|.+|.-+
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAl 109 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAAL 109 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhh
Confidence 6666544 455667788999999999999998754
No 126
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=20.55 E-value=63 Score=19.21 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=11.2
Q ss_pred eecCCCCCCceEECCCCC
Q 042059 136 TECPNCYGRGKLVCPVCL 153 (185)
Q Consensus 136 ~~C~~C~G~G~~iC~~C~ 153 (185)
..|..|+..++..|+.|.
T Consensus 3 ~~C~vC~~~~kY~Cp~C~ 20 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCG 20 (30)
T ss_dssp EEETSSSSEESEE-TTT-
T ss_pred CCCccCcCCCEEECCCcC
Confidence 457777776666777774
Done!