Query 042059
Match_columns 185
No_of_seqs 203 out of 1070
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 23:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.7 2.4E-18 8.3E-23 128.2 5.8 85 78-166 1-101 (104)
2 1nlt_A Protein YDJ1, mitochond 99.7 4.7E-18 1.6E-22 144.2 7.3 103 75-181 8-127 (248)
3 1exk_A DNAJ protein; extended 99.2 2.7E-11 9.1E-16 85.2 5.8 58 99-160 12-78 (79)
4 1exk_A DNAJ protein; extended 97.5 4.6E-05 1.6E-09 53.0 2.7 55 64-147 11-76 (79)
5 2ctt_A DNAJ homolog subfamily 97.4 0.0001 3.5E-09 54.1 3.6 56 64-148 28-94 (104)
6 3lcz_A YCZA, inhibitor of trap 97.3 8.4E-05 2.9E-09 49.5 1.9 29 134-162 8-39 (53)
7 3agx_A DNAJ homolog subfamily 96.9 0.00048 1.6E-08 55.4 2.8 21 78-98 2-22 (181)
8 2bx9_A Anti-trap, AT, tryptoph 96.8 0.00019 6.5E-09 47.7 -0.2 26 99-124 10-38 (53)
9 1nlt_A Protein YDJ1, mitochond 96.4 0.00091 3.1E-08 56.2 1.6 23 99-121 81-108 (248)
10 2bx9_A Anti-trap, AT, tryptoph 96.4 0.0022 7.6E-08 42.5 3.0 26 135-160 9-37 (53)
11 3lcz_A YCZA, inhibitor of trap 96.0 0.0046 1.6E-07 41.0 2.9 25 99-123 10-37 (53)
12 3pmq_A Decaheme cytochrome C M 94.4 0.0018 6.2E-08 62.0 -4.0 65 82-146 168-257 (669)
13 2q2g_A HSP40 protein, heat sho 93.6 0.035 1.2E-06 44.3 2.6 22 77-98 2-23 (180)
14 1c3g_A Heat shock protein 40; 73.9 0.95 3.2E-05 35.5 0.9 20 79-98 1-20 (170)
15 3lz8_A Putative chaperone DNAJ 73.9 1.3 4.6E-05 38.4 1.9 24 75-98 137-160 (329)
16 3nyb_B Protein AIR2; polya RNA 55.0 5.6 0.00019 28.0 1.8 50 99-152 6-65 (83)
17 1dl6_A Transcription factor II 52.4 6.4 0.00022 25.8 1.7 24 144-170 28-52 (58)
18 3i38_A Putative chaperone DNAJ 46.0 5.9 0.0002 28.9 0.8 22 77-98 10-31 (109)
19 3k1f_M Transcription initiatio 38.1 9.2 0.00031 31.3 0.8 36 135-173 21-67 (197)
20 1pft_A TFIIB, PFTFIIBN; N-term 36.3 15 0.00053 22.7 1.5 9 144-152 22-30 (50)
21 1xao_A YDJ1, mitochondrial pro 36.2 11 0.00037 27.8 0.9 22 77-98 5-26 (121)
22 4bbr_M Transcription initiatio 31.2 16 0.00056 31.6 1.3 35 135-172 21-66 (345)
23 1qyp_A RNA polymerase II; tran 23.8 91 0.0031 19.6 3.7 33 110-142 16-50 (57)
24 2q2g_A HSP40 protein, heat sho 22.9 25 0.00086 27.4 0.9 22 77-98 91-112 (180)
25 3agx_A DNAJ homolog subfamily 22.6 26 0.00087 27.5 0.9 22 77-98 91-112 (181)
26 1tfi_A Transcriptional elongat 22.1 1.1E+02 0.0037 19.2 3.7 33 110-142 10-44 (50)
27 1c3g_A Heat shock protein 40; 20.6 23 0.00078 27.4 0.2 22 77-98 85-106 (170)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=128.19 Aligned_cols=85 Identities=28% Similarity=0.556 Sum_probs=77.0
Q ss_pred cCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCC
Q 042059 78 ISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGR 144 (185)
Q Consensus 78 g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~ 144 (185)
|.|+.+.|.|+|+|||+|.++ +.|..|+|+|. .+|+.|+|+|++...+ |+|+.+.+|+.|+|+
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence 578999999999999999987 99999999996 7899999999877643 678888999999999
Q ss_pred ceEE---CCCCCCceEEeeeeEEec
Q 042059 145 GKLV---CPVCLGTGLPNNKGLLRR 166 (185)
Q Consensus 145 G~~i---C~~C~G~G~i~~~k~L~~ 166 (185)
|+++ |+.|+|.|++++++.|++
T Consensus 77 G~~i~~~C~~C~G~G~v~~~k~l~V 101 (104)
T 2ctt_A 77 GSIIISPCVVCRGAGQAKQKKRSGP 101 (104)
T ss_dssp SEECSSCCSSSSSCSEECCCCSSCC
T ss_pred ceECCCcCCCCCCeeEEEEEEEEEE
Confidence 9997 999999999999888876
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.72 E-value=4.7e-18 Score=144.25 Aligned_cols=103 Identities=22% Similarity=0.415 Sum_probs=88.8
Q ss_pred ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059 75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY 142 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~ 142 (185)
+.+|+|+.+.|.|+|+|+|+|.++ +.|..|+|+|+ .+|+.|+|+|++....+.++.+++.+.+|+.|+
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~ 87 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCH 87 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCS
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCC
Confidence 467999999999999999999987 79999999996 789999999998876666552235789999999
Q ss_pred CCceEE-----CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059 143 GRGKLV-----CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL 181 (185)
Q Consensus 143 G~G~~i-----C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l 181 (185)
|+|+++ |+.|+|.|++.+++.|++ +|..+|.+|+-
T Consensus 88 G~G~~i~~~~~C~~C~G~g~~~~~~~l~V----~Ip~G~~~G~~ 127 (248)
T 1nlt_A 88 GTGDIIDPKDRCKSCNGKKVENERKILEV----HVEPGMKDGQR 127 (248)
T ss_dssp SSSSCCCTTSBCSSSTTSCEEEEEEEEEE----EECTTCCTTCE
T ss_pred CcCEEeccCCCCcccCCCceEeeeEEEEE----EECCCccCCCE
Confidence 999776 999999999999999998 66667776653
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.18 E-value=2.7e-11 Score=85.22 Aligned_cols=58 Identities=36% Similarity=0.784 Sum_probs=51.5
Q ss_pred eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE---CCCCCCceEEee
Q 042059 99 PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGLPNN 160 (185)
Q Consensus 99 ~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i---C~~C~G~G~i~~ 160 (185)
+.|+.|+|+|. .+|+.|+|+|.++..+ |+|+.+.+|+.|+|.|+++ |+.|+|.|++.+
T Consensus 12 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 12 EECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER 78 (79)
T ss_dssp EECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred eECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence 89999999996 6899999999987633 7788889999999999995 999999999865
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.51 E-value=4.6e-05 Score=52.96 Aligned_cols=55 Identities=33% Similarity=0.773 Sum_probs=40.6
Q ss_pred cceeeccccCCccccCCeeEEEEeeeehhcCCceeeecCCCCCccce-----------eCCCCCcccEEEEeeecCCCCc
Q 042059 64 RRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAV-----------LCDMCGGTGKWKALNRKRAKDV 132 (185)
Q Consensus 64 r~~c~~c~~~~~~~g~Di~~~l~Vslee~~~G~~k~~C~~C~GtG~~-----------~C~~C~GsG~~~~~~r~~~G~~ 132 (185)
...|..|.++-.. .+.....|+.|+|+|.+ .|+.|+|+|.++.
T Consensus 11 ~~~C~~C~G~G~~-----------------~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--------- 64 (79)
T 1exk_A 11 LEECDVCHGSGAK-----------------PGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK--------- 64 (79)
T ss_dssp EEECGGGTTTSBC-----------------SSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS---------
T ss_pred ceECCCCcccccC-----------------CCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC---------
Confidence 3478889888211 12223789999999962 7999999998642
Q ss_pred eeeeecCCCCCCceE
Q 042059 133 YEFTECPNCYGRGKL 147 (185)
Q Consensus 133 ~~~~~C~~C~G~G~~ 147 (185)
.+|+.|+|.|++
T Consensus 65 ---~~C~~C~G~G~~ 76 (79)
T 1exk_A 65 ---DPCNKCHGHGRV 76 (79)
T ss_dssp ---SBCGGGTTSSEE
T ss_pred ---CcCCCCCCeEEE
Confidence 579999999976
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.0001 Score=54.13 Aligned_cols=56 Identities=32% Similarity=0.692 Sum_probs=42.7
Q ss_pred cceeeccccCCccccCCeeEEEEeeeehhcCCceeeecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCc
Q 042059 64 RRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDV 132 (185)
Q Consensus 64 r~~c~~c~~~~~~~g~Di~~~l~Vslee~~~G~~k~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~ 132 (185)
...|..|.|+-. ..|.....|+.|+|+|. .+|+.|+|+|.++.
T Consensus 28 ~~~C~~C~G~G~-----------------~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~--------- 81 (104)
T 2ctt_A 28 MDTCERCNGKGN-----------------EPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII--------- 81 (104)
T ss_dssp CEECSSSSSSSS-----------------CTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS---------
T ss_pred eeECCCCcCCcc-----------------CCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC---------
Confidence 458999999821 12444478999999995 47999999998653
Q ss_pred eeeeecCCCCCCceEE
Q 042059 133 YEFTECPNCYGRGKLV 148 (185)
Q Consensus 133 ~~~~~C~~C~G~G~~i 148 (185)
.+|+.|+|.|++.
T Consensus 82 ---~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 82 ---SPCVVCRGAGQAK 94 (104)
T ss_dssp ---SCCSSSSSCSEEC
T ss_pred ---CcCCCCCCeeEEE
Confidence 6799999999863
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.31 E-value=8.4e-05 Score=49.46 Aligned_cols=29 Identities=45% Similarity=0.933 Sum_probs=25.3
Q ss_pred eeeecCCCCCCceEE---CCCCCCceEEeeee
Q 042059 134 EFTECPNCYGRGKLV---CPVCLGTGLPNNKG 162 (185)
Q Consensus 134 ~~~~C~~C~G~G~~i---C~~C~G~G~i~~~k 162 (185)
.+.+|+.|+|+|+++ |+.|+|.|++.+.+
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~~ 39 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTAQ 39 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECHH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEEe
Confidence 578999999999986 99999999987654
No 7
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=96.87 E-value=0.00048 Score=55.41 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=16.4
Q ss_pred cCCeeEEEEeeeehhcCCcee
Q 042059 78 ISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 78 g~Di~~~l~Vslee~~~G~~k 98 (185)
++|+.+.|.|+|+|+|+|+++
T Consensus 2 ~~d~~~~l~islee~~~G~~k 22 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTK 22 (181)
T ss_dssp ----CEEEEECHHHHHHCEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEE
Confidence 579999999999999999987
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.78 E-value=0.00019 Score=47.72 Aligned_cols=26 Identities=27% Similarity=0.691 Sum_probs=18.1
Q ss_pred eecCCCCCccc---eeCCCCCcccEEEEe
Q 042059 99 PVCRNCGGSGA---VLCDMCGGTGKWKAL 124 (185)
Q Consensus 99 ~~C~~C~GtG~---~~C~~C~GsG~~~~~ 124 (185)
..|+.|+|+|. ..|+.|+|.|+++..
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~~~ 38 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVILTA 38 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred ccCCCCcceeccCCCCCccCCCCccEEEE
Confidence 56777777776 567777777776553
No 9
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.42 E-value=0.00091 Score=56.24 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=13.0
Q ss_pred eecCCCCCccc-----eeCCCCCcccEE
Q 042059 99 PVCRNCGGSGA-----VLCDMCGGTGKW 121 (185)
Q Consensus 99 ~~C~~C~GtG~-----~~C~~C~GsG~~ 121 (185)
..|+.|+|+|. ..|+.|+|.|++
T Consensus 81 ~~C~~C~G~G~~i~~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 81 TECDVCHGTGDIIDPKDRCKSCNGKKVE 108 (248)
T ss_dssp CSCTTCSSSSSCCCTTSBCSSSTTSCEE
T ss_pred EcCCCCCCcCEEeccCCCCcccCCCceE
Confidence 55666666663 446666666654
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.38 E-value=0.0022 Score=42.47 Aligned_cols=26 Identities=35% Similarity=0.903 Sum_probs=19.9
Q ss_pred eeecCCCCCCceEE---CCCCCCceEEee
Q 042059 135 FTECPNCYGRGKLV---CPVCLGTGLPNN 160 (185)
Q Consensus 135 ~~~C~~C~G~G~~i---C~~C~G~G~i~~ 160 (185)
..+|+.|+|.|.++ |+.|+|.|.+..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 46788888888765 888888888764
No 11
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=95.98 E-value=0.0046 Score=40.95 Aligned_cols=25 Identities=40% Similarity=0.824 Sum_probs=19.2
Q ss_pred eecCCCCCccc---eeCCCCCcccEEEE
Q 042059 99 PVCRNCGGSGA---VLCDMCGGTGKWKA 123 (185)
Q Consensus 99 ~~C~~C~GtG~---~~C~~C~GsG~~~~ 123 (185)
..|+.|+|+|. ..|+.|+|.|.+..
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 67888888887 67888888887654
No 12
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=94.43 E-value=0.0018 Score=61.99 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=47.0
Q ss_pred eEEEEeeeehhcCCcee-------eecCCCCCccc---------eeCCCCCcccEEE--------EeeecCCCCc-eeee
Q 042059 82 GSLVSVPEAIALDGKER-------PVCRNCGGSGA---------VLCDMCGGTGKWK--------ALNRKRAKDV-YEFT 136 (185)
Q Consensus 82 ~~~l~Vslee~~~G~~k-------~~C~~C~GtG~---------~~C~~C~GsG~~~--------~~~r~~~G~~-~~~~ 136 (185)
.+.++|+|+|++.|.++ ..|..|+|+|. ..|+.|+|+.... .....+.|.| +...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 57889999999999887 89999999875 5799999994211 1111223333 3457
Q ss_pred ecCCCCCCce
Q 042059 137 ECPNCYGRGK 146 (185)
Q Consensus 137 ~C~~C~G~G~ 146 (185)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 8999998875
No 13
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=93.60 E-value=0.035 Score=44.28 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=19.2
Q ss_pred ccCCeeEEEEeeeehhcCCcee
Q 042059 77 LISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 77 ~g~Di~~~l~Vslee~~~G~~k 98 (185)
.++|+.+.|.|+|+|+|+|+++
T Consensus 2 ~g~d~~~~l~islee~~~G~~k 23 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRK 23 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEE
T ss_pred CCCCEEEEEEeeHHHhcCCcEE
Confidence 4789999999999999999987
No 14
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=73.92 E-value=0.95 Score=35.50 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=18.7
Q ss_pred CCeeEEEEeeeehhcCCcee
Q 042059 79 SNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 79 ~Di~~~l~Vslee~~~G~~k 98 (185)
+|+.+.|.|+|+|+|+|+++
T Consensus 1 ~d~~~~l~islee~~~G~~k 20 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKK 20 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEE
T ss_pred CCEEEEEEeEHHHhhCCcEE
Confidence 48899999999999999998
No 15
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=73.91 E-value=1.3 Score=38.44 Aligned_cols=24 Identities=21% Similarity=-0.031 Sum_probs=22.3
Q ss_pred ccccCCeeEEEEeeeehhcCCcee
Q 042059 75 IALISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 75 ~~~g~Di~~~l~Vslee~~~G~~k 98 (185)
+.+|.|+.+.|.|+|+|+|+|.++
T Consensus 137 ~~~g~Dl~~~l~vsleea~~G~~k 160 (329)
T 3lz8_A 137 AARGHDLEIEVAVFLEETLAEQTR 160 (329)
T ss_dssp CCCCCCEEEEECCCTTGGGSCEEE
T ss_pred cCCCCCEEEEEecchhhhhhccce
Confidence 467999999999999999999988
No 16
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=54.99 E-value=5.6 Score=28.02 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=27.5
Q ss_pred eecCCCCCccc--------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE--CCCC
Q 042059 99 PVCRNCGGSGA--------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV--CPVC 152 (185)
Q Consensus 99 ~~C~~C~GtG~--------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i--C~~C 152 (185)
+.|..|...|- .+|-.|...|.+...- ..+ .....|..|+..|.+- |+.=
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c-~~p---~~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPK-VLP---FHTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCGGGCSSC
T ss_pred CCCCCCCCCCCccccCCCcccccccccCCcccccc-cCC---CCCCeecccCCCCcCcccCCcc
Confidence 78999988886 3566677776643211 000 1347899999999876 8753
No 17
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=52.42 E-value=6.4 Score=25.82 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=13.8
Q ss_pred CceEECCCCCCceEEeee-eEEecCChh
Q 042059 144 RGKLVCPVCLGTGLPNNK-GLLRRPDAR 170 (185)
Q Consensus 144 ~G~~iC~~C~G~G~i~~~-k~L~~p~~~ 170 (185)
+|.++|..| |++.+. .+...|+-+
T Consensus 28 ~ge~vC~~C---GlVl~e~~iD~gpEWR 52 (58)
T 1dl6_A 28 AGDMICPEC---GLVVGDRVIDVGSEWR 52 (58)
T ss_dssp SCCEECTTT---CCEECCSCCCCCCSCC
T ss_pred CCeEEeCCC---CCEEeccccccCCccc
Confidence 466779998 455544 344445433
No 18
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=46.00 E-value=5.9 Score=28.86 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=20.4
Q ss_pred ccCCeeEEEEeeeehhcCCcee
Q 042059 77 LISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 77 ~g~Di~~~l~Vslee~~~G~~k 98 (185)
.|.|+.+.+.|+|.||+.|.++
T Consensus 10 ~G~DL~~~~~Isl~eAl~G~~i 31 (109)
T 3i38_A 10 VGHNLEIVLPLAPWEAALGAKV 31 (109)
T ss_dssp ETTEEEEEEEECHHHHHHCEEE
T ss_pred ECCEEEEEEEcCHHHHhCCCEE
Confidence 4789999999999999999987
No 19
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=38.11 E-value=9.2 Score=31.29 Aligned_cols=36 Identities=31% Similarity=0.696 Sum_probs=22.6
Q ss_pred eeecCCCCC----------CceEECCCCCCceEEeeee-EEecCChhhhh
Q 042059 135 FTECPNCYG----------RGKLVCPVCLGTGLPNNKG-LLRRPDARKLL 173 (185)
Q Consensus 135 ~~~C~~C~G----------~G~~iC~~C~G~G~i~~~k-~L~~p~~~~~~ 173 (185)
...|+.|++ +|..+|..| |.+.+.. +.+.|+-+.+.
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdC---GLVLEEriID~GPEWRAFs 67 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALC---GLVLSDKLVDTRSEWRTFS 67 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTT---CBBCCCCCBCHHHHHHHHH
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCC---CCCcCCceeECCCCCcCcC
Confidence 446777765 577779999 4665444 44556555554
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=36.33 E-value=15 Score=22.68 Aligned_cols=9 Identities=56% Similarity=1.490 Sum_probs=6.8
Q ss_pred CceEECCCC
Q 042059 144 RGKLVCPVC 152 (185)
Q Consensus 144 ~G~~iC~~C 152 (185)
+|..+|..|
T Consensus 22 ~gelvC~~C 30 (50)
T 1pft_A 22 RGEIVCAKC 30 (50)
T ss_dssp TTEEEESSS
T ss_pred CCeEECccc
Confidence 467778888
No 21
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=36.24 E-value=11 Score=27.80 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=20.4
Q ss_pred ccCCeeEEEEeeeehhcCCcee
Q 042059 77 LISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 77 ~g~Di~~~l~Vslee~~~G~~k 98 (185)
.|.|+.+.+.|+|.+|+.|.++
T Consensus 5 ~G~DL~~~~~Isl~eAllG~~i 26 (121)
T 1xao_A 5 DGDDLVYEAEIDLLTAIAGGEF 26 (121)
T ss_dssp ETTEEEEEEEEEHHHHHHCEEE
T ss_pred ECCeEEEEEEcCHHHHhCCCEE
Confidence 4789999999999999999987
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=31.18 E-value=16 Score=31.57 Aligned_cols=35 Identities=31% Similarity=0.736 Sum_probs=20.4
Q ss_pred eeecCCCCC----------CceEECCCCCCceEEeeee-EEecCChhhh
Q 042059 135 FTECPNCYG----------RGKLVCPVCLGTGLPNNKG-LLRRPDARKL 172 (185)
Q Consensus 135 ~~~C~~C~G----------~G~~iC~~C~G~G~i~~~k-~L~~p~~~~~ 172 (185)
...|+.|++ +|.++|..| |.+.+.. +.+.|+-+.+
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~C---GlVl~e~~iD~g~EWR~f 66 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALC---GLVLSDKLVDTRSEWRTF 66 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTT---CBEEESCCBCHHHHHTTT
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCC---CCCccCcccccCccccCC
Confidence 345666664 577789999 5565544 4445544443
No 23
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=23.83 E-value=91 Score=19.60 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=16.0
Q ss_pred eeCCCCCcccEEEEeeecCC--CCceeeeecCCCC
Q 042059 110 VLCDMCGGTGKWKALNRKRA--KDVYEFTECPNCY 142 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~~--G~~~~~~~C~~C~ 142 (185)
..|+.|+.........+... -.+.....|..|+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCG 50 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSC
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCC
Confidence 45777777544444333221 1233445666663
No 24
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=22.88 E-value=25 Score=27.43 Aligned_cols=22 Identities=23% Similarity=0.022 Sum_probs=20.4
Q ss_pred ccCCeeEEEEeeeehhcCCcee
Q 042059 77 LISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 77 ~g~Di~~~l~Vslee~~~G~~k 98 (185)
.|.|+.+++.|+|.+|+.|.+.
T Consensus 91 ~G~DL~~~~~Isl~eAllG~~i 112 (180)
T 2q2g_A 91 DDCHLIMKVTIPLVRALTGFTC 112 (180)
T ss_dssp ETTEEEEEEEEEHHHHHHCEEE
T ss_pred cCCEEEEEEEcCHHHHhCCCEE
Confidence 5899999999999999999876
No 25
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=22.65 E-value=26 Score=27.46 Aligned_cols=22 Identities=18% Similarity=-0.173 Sum_probs=20.4
Q ss_pred ccCCeeEEEEeeeehhcCCcee
Q 042059 77 LISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 77 ~g~Di~~~l~Vslee~~~G~~k 98 (185)
.|.|+.+++.|+|.+|+.|.+.
T Consensus 91 ~G~DL~~~~~Isl~eAllG~~i 112 (181)
T 3agx_A 91 DGSDVIYPARISLREALCGCTV 112 (181)
T ss_dssp ETTEEEEEEEEEHHHHHHCEEE
T ss_pred eCCcEEEEEEcCHHHHhCCCEE
Confidence 5899999999999999999887
No 26
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=22.06 E-value=1.1e+02 Score=19.24 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=20.9
Q ss_pred eeCCCCCcccEEEEeeecCCC--CceeeeecCCCC
Q 042059 110 VLCDMCGGTGKWKALNRKRAK--DVYEFTECPNCY 142 (185)
Q Consensus 110 ~~C~~C~GsG~~~~~~r~~~G--~~~~~~~C~~C~ 142 (185)
..|+.|+.........++... .+.....|..|+
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg 44 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECG 44 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSC
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCC
Confidence 578888887776665444433 344566777774
No 27
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=20.58 E-value=23 Score=27.42 Aligned_cols=22 Identities=9% Similarity=-0.162 Sum_probs=20.4
Q ss_pred ccCCeeEEEEeeeehhcCCcee
Q 042059 77 LISNSGSLVSVPEAIALDGKER 98 (185)
Q Consensus 77 ~g~Di~~~l~Vslee~~~G~~k 98 (185)
.|.|+.+++.|+|.+|+.|.+.
T Consensus 85 ~G~DL~~~~~Isl~eAllG~~~ 106 (170)
T 1c3g_A 85 DGDDLIYTLPLSFKESLLGFSK 106 (170)
T ss_dssp ETTEEEEEECCBHHHHHHCEEE
T ss_pred eCCcEeEEEEcCHHHHhCCCeE
Confidence 4899999999999999999887
Done!