BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042060
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 278 YDPCASDYTEVYLNRPDVQKALHANVTN-IPYPWTHCSDKI-SFWSDAXXXXXXXXXXXX 335
YDPC Y+ Y NR DVQ ALHANVT + Y W CSD I + W DA
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVT 395
GLR+WV+SGDTD +P+TATRY++ LGL T W PWY +++VGGW+ Y GL V+
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 123
Query: 396 VRGAGHQVPTFAPKQSLQLLRHFLANKKLPSK 427
VRGAGH+VP P+Q+L L ++FL K +P +
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 155
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 278 YDPCASDYTEVYLNRPDVQKALHANVTN-IPYPWTHCSDKI-SFWSDAXXXXXXXXXXXX 335
YDPC Y+ Y NR DVQ ALHANVT + Y W CSD I + W DA
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVT 395
GLR+WV+SGDTD +P+TATRY++ LGL T W PWY +++VGGW+ Y GL V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 396 VRGAGHQVPTFAPKQSLQLLRHFLANKKLPSK 427
VRGAGH+VP P+Q+L L ++FL K +P +
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Query: 278 YDPCASDYTEVYLNRPDVQKALHANVTN-IPYPWTHCSDKI-SFWSDAXXXXXXXXXXXX 335
YDPC Y+ Y NR DVQ ALHANVT + Y W CSD I + W DA
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVT 395
GLR+WV+SGDTD +P+TATRY++ LGL T W PWY +++VGGW+ Y GL V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 396 VRGAGHQVPTFAPKQSLQLLRHFLANKKLP 425
VRGAGH+VP P+Q+L L ++FL K +P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Query: 278 YDPCASDYTEVYLNRPDVQKALHANVTN-IPYPWTHCSDKI-SFWSDAXXXXXXXXXXXX 335
YDPC Y+ Y NR DVQ ALHANVT + Y W CSD I + W DA
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVT 395
GLR+WV+SGDTD +P+TATRY++ LGL T W PWY +++VGGW+ Y GL V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 396 VRGAGHQVPTFAPKQSLQLLRHFLANKKLP 425
VRGAGH+VP P+Q+L L ++FL K +P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 96/155 (61%), Gaps = 5/155 (3%)
Query: 278 YDPCASDYTEVYLNRPDVQKALHANVTNI-PYPWTHCSDKI-SFWSDAXXXXXXXXXXXX 335
YDPCA + YLN P+VQ ALHANV+ I YPWT CS+ I W A
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWY---AEKQVGGWTIEYDGLM 392
+ GLRVWVYSGDTD +PV++TR +L L L W PWY E++VGGW+++Y+GL
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 393 FVTVRGAGHQVPTFAPKQSLQLLRHFLANKKLPSK 427
+VTVRGAGH VP P Q+ L + FL + +P++
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPAE 158
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 119/468 (25%), Positives = 190/468 (40%), Gaps = 96/468 (20%)
Query: 25 EADRVIKLPG---QPEVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNG-- 79
+ D + +LPG QP F+QY+GY+ S + L YWF E+ PE P++LWLNG
Sbjct: 3 DQDEIQRLPGLAKQP--SFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 80 -------------VFLDKP--YTNRHIPIIPHLIYCTFWL--CASILFAYG--------- 113
FL +P T + P +LI +L A + F+Y
Sbjct: 59 GCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATND 118
Query: 114 PKLAASIFSHNPLSYHLRMHRNLECDMQLGIGVIFDSNKIAS------QENHINLKGFAV 167
++A S F L R+ + + G + I + Q+ +NL+G AV
Sbjct: 119 TEVAQSNFE--ALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAV 176
Query: 168 GNALLDDETDQTGMIDYAWDHAVISDRLYHDI------KRECNFSIAHVDKVSENCSLAL 221
GN L E + ++ +A+ H ++ +RL+ + + +CNF D C L
Sbjct: 177 GNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNF----YDNKDLECVTNL 232
Query: 222 DGYFAVYKII-----DMYSLYTP--DCVNSNFTIKR------------TRSLPIIRGIAP 262
V +I+ ++Y+LY P V S+F ++ TR LP+ R
Sbjct: 233 Q---EVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTR-LPLKRMWHQ 288
Query: 263 KLFSKFDGWRRKPAGYDPCA-SDYTEVYLNRPDVQKALHANVTNIPY---PWTHCSDKIS 318
L D R P PC + YLN P V+KAL NIP W C+ ++
Sbjct: 289 ALLRSGDKVRMDP----PCTNTTAASTYLNNPYVRKAL-----NIPEQLPQWDMCNFLVN 339
Query: 319 FWSDAXXXXXXXXXXXXRGGLR--VWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWY 376
+ + +Y+GD D + + L K + +PW
Sbjct: 340 LQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWL 399
Query: 377 AE-----KQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRHFL 419
+ +Q+ G+ E+ + F+T++GAGH VPT P + + FL
Sbjct: 400 VKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 447
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 113/263 (42%), Gaps = 52/263 (19%)
Query: 23 QQEADRVIKLPGQPE-VKFKQYAGYVTVNESHGRALFYWFFE-ASSKPEEKPLLLWLNG- 79
QQE DR++ LPGQP V F Y GYVT+++++GRAL+YWF E ++ P PL+LWLNG
Sbjct: 4 QQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGG 63
Query: 80 -------------VFLDKPYTNRHIPIIPHLIYCTFWLCASILFAYGPKLAASIFSHNPL 126
+ + +TN ++ + A+ILFA P A FS++
Sbjct: 64 PGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNK---AANILFAESP--AGVGFSYSNT 118
Query: 127 SYHLRM------------------------HRNLECDMQLGIGVIFDSNKIASQENH--- 159
S L M +R + G + S + N+
Sbjct: 119 SSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGESGHFIPQLSQVVYRNRNNSPF 178
Query: 160 INLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKREC-NFSIAHVDKVSENCS 218
IN +G V + L +D D GM + W H +ISD + C S H + C+
Sbjct: 179 INFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMH---PTPECT 235
Query: 219 LALDGYFAVYKIIDMYSLYTPDC 241
+ A I+ Y++YTP C
Sbjct: 236 EVWNKALAEQGNINPYTIYTPTC 258
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Antipain, And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 26 ADRVIKLPGQPEVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNG 79
ADR+ +LPGQP V F Y+GY+TV+E GR+LFY EA + PL+LWLNG
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNG 61
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 160 INLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKREC-NFSIAHVDKVSENCS 218
INLKGF VGN L+DD D G ++ W+H ++SD Y +K C + S H S C
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIH---PSPACD 235
Query: 219 LALDGYFAVYKIIDMYSLYTPDC 241
A D A IDMYSLYTP C
Sbjct: 236 AATDVATAEQGNIDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 26 ADRVIKLPGQPEVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNG 79
ADR+ +LPGQP V F Y+GY+TV+E GR+LFY EA + PL+LWLNG
Sbjct: 3 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNG 56
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 160 INLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKREC-NFSIAHVDKVSENCS 218
INLKGF VGN L+DD D G ++ W+H ++SD Y +K C + S H S C
Sbjct: 174 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIH---PSPACD 230
Query: 219 LALDGYFAVYKIIDMYSLYTPDC 241
A D A IDMYSLYTP C
Sbjct: 231 AATDVATAEQGNIDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 26 ADRVIKLPGQPEVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNG 79
ADR+ +LPGQP V F Y+GY+TV+E GR+LFY EA + PL+LWLNG
Sbjct: 4 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNG 57
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 160 INLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKREC-NFSIAHVDKVSENCS 218
INLKGF VGN L+DD D G ++ W+H ++SD Y +K C + S H S C
Sbjct: 175 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIH---PSPACD 231
Query: 219 LALDGYFAVYKIIDMYSLYTPDC 241
A D A IDMYSLYTP C
Sbjct: 232 AATDVATAEQGNIDMYSLYTPVC 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 26 ADRVIKLPGQPEVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNG 79
ADR+ +LPGQP V F Y+GY+TV+E GR+LFY EA + PL+LWLNG
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNG 61
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 160 INLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKREC-NFSIAHVDKVSENCS 218
INLKGF VGN L+DD D G ++ W+H ++SD Y +K C + S H S C
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIH---PSPACD 235
Query: 219 LALDGYFAVYKIIDMYSLYTPDC 241
A D A IDMYSLYTP C
Sbjct: 236 AATDVATAEQGNIDMYSLYTPVC 258
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 43/216 (19%)
Query: 25 EADRVIKLPG---QPEVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLN--- 78
+ D + +LPG QP F+QY+GY+ S + L YWF E+ PE P++LWLN
Sbjct: 5 DQDEIQRLPGLAKQP--SFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 79 ------------GVFLDKP--YTNRHIPIIPHLIYCTFWL--CASILFAYG--------- 113
G FL +P T + P +LI +L A + F+Y
Sbjct: 61 GCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATND 120
Query: 114 PKLAASIFSHNPLSYHLRMHRNLECDMQLGIGVIFDSNKIAS------QENHINLKGFAV 167
++A S F L R+ + + G + I + Q+ +NL+G AV
Sbjct: 121 TEVAQSNFE--ALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAV 178
Query: 168 GNALLDDETDQTGMIDYAWDHAVISDRLYHDIKREC 203
GN L E + ++ +A+ H ++ +RL+ ++ C
Sbjct: 179 GNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC 214
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 279 DPCASDYT--EVYLNRPDVQKALHANVTNIPYP---WTHCSDKISFWSDAXXXXXXXXXX 333
DP ++ T YLN P V+KAL NIP W C+ ++
Sbjct: 2 DPPCTNTTAASTYLNNPYVRKAL-----NIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYL 56
Query: 334 XXRGGLR--VWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAE-----KQVGGWTI 386
+ + +Y+GD D + + L K + +PW + +Q+ G+
Sbjct: 57 KLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVK 116
Query: 387 EYDGLMFVTVRGAGHQVPTFAPKQSLQLLRHFL 419
E+ + F+T++GAGH VPT P + + FL
Sbjct: 117 EFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 149
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 42 QYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNG 79
QY GY+ V E + F+W FE+ + P + P++LWLNG
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNG 52
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 27/166 (16%)
Query: 272 RRKPAGYDPCASDYTEV--YLNRPDVQKALHANVTNIPYPWTHCSDKISFWSDAXXXXXX 329
R+ G + C ++ YLN+ V++A+ A V + + F D
Sbjct: 259 RKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHT 318
Query: 330 XXXXXXRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPW-----YAEKQVGGW 384
L + VY+GD D + LG K + PW +A ++V W
Sbjct: 319 AVTDLLNQDLPILVYAGDKD---------FICNWLGNKAWTDVLPWKYDEEFASQKVRNW 369
Query: 385 TIE-----------YDGLMFVTVRGAGHQVPTFAPKQSLQLLRHFL 419
T Y ++ V GH VP P+ +L ++ ++
Sbjct: 370 TASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWI 415
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 42 QYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNG 79
QY GY+ V E + F+W FE+ + P + P++LWLNG
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNG 52
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 27/166 (16%)
Query: 272 RRKPAGYDPCASDYTEV--YLNRPDVQKALHANVTNIPYPWTHCSDKISFWSDAXXXXXX 329
R+ G + C ++ YLN+ V++A+ A V + + F D
Sbjct: 259 RKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHT 318
Query: 330 XXXXXXRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPW-----YAEKQVGGW 384
L + VY+GD D + LG K + PW +A ++V W
Sbjct: 319 AVTDLLNQDLPILVYAGDKD---------FICNWLGNKAWTDVLPWKYDEEFASQKVRNW 369
Query: 385 TIE-----------YDGLMFVTVRGAGHQVPTFAPKQSLQLLRHFL 419
T Y ++ V GH VP P+ +L ++ ++
Sbjct: 370 TASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWI 415
>pdb|4AU0|A Chain A, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
6-chloro-4- Methylumbelliferyl-beta-cellobioside
pdb|4AU0|B Chain B, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
6-chloro-4- Methylumbelliferyl-beta-cellobioside
pdb|4AX6|A Chain A, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
6-chloro-4-phenylumbelliferyl-beta-cellobioside
pdb|4AX6|B Chain B, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
6-chloro-4-phenylumbelliferyl-beta-cellobioside
pdb|4AX7|A Chain A, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
4-methylumbelliferyl-beta-d-cellobioside
pdb|4AX7|B Chain B, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
4-methylumbelliferyl-beta-d-cellobioside
pdb|4AX7|C Chain C, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
4-methylumbelliferyl-beta-d-cellobioside
pdb|4AX7|D Chain D, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
4-methylumbelliferyl-beta-d-cellobioside
Length = 363
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 235 SLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFD----GWRRKPAGYDPCASDYTEVYL 290
+L TP C N+ + + + P + D GW PA DP A + VY
Sbjct: 145 NLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYK 204
Query: 291 N--RPDVQKALHANVTN 305
N P + L NV N
Sbjct: 205 NASSPRALRGLATNVAN 221
>pdb|1HGY|A Chain A, Cel6a D221a Mutant
pdb|1HGY|B Chain B, Cel6a D221a Mutant
Length = 365
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 235 SLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFD----GWRRKPAGYDPCASDYTEVYL 290
+L TP C N+ + + + P + D GW PA DP A + VY
Sbjct: 147 NLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYK 206
Query: 291 N--RPDVQKALHANVTN 305
N P + L NV N
Sbjct: 207 NASSPRALRGLATNVAN 223
>pdb|1HGW|A Chain A, Cel6a D175a Mutant
pdb|1HGW|B Chain B, Cel6a D175a Mutant
Length = 365
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 235 SLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFD----GWRRKPAGYDPCASDYTEVYL 290
+L TP C N+ + + + P + D GW PA DP A + VY
Sbjct: 147 NLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYK 206
Query: 291 N--RPDVQKALHANVTN 305
N P + L NV N
Sbjct: 207 NASSPRALRGLATNVAN 223
>pdb|3CBH|A Chain A, Three-Dimensional Structure Of Cellobiohydrolase From
Trichoderma Reesei
Length = 365
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 235 SLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFD----GWRRKPAGYDPCASDYTEVYL 290
+L TP C N+ + + + P + D GW PA DP A + VY
Sbjct: 147 NLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYK 206
Query: 291 N--RPDVQKALHANVTN 305
N P + L NV N
Sbjct: 207 NASSPRALRGLATNVAN 223
>pdb|1CB2|A Chain A, Cellobiohydrolase Ii, Catalytic Domain, Mutant Y169f
pdb|1CB2|B Chain B, Cellobiohydrolase Ii, Catalytic Domain, Mutant Y169f
pdb|1QJW|A Chain A, Cel6a (Y169f) With A Non-Hydrolysable Cellotetraose
pdb|1QJW|B Chain B, Cel6a (Y169f) With A Non-Hydrolysable Cellotetraose
Length = 365
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 235 SLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFD----GWRRKPAGYDPCASDYTEVYL 290
+L TP C N+ + + + P + D GW PA DP A + VY
Sbjct: 147 NLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYK 206
Query: 291 N--RPDVQKALHANVTN 305
N P + L NV N
Sbjct: 207 NASSPRALRGLATNVAN 223
>pdb|1QK0|A Chain A, Cel6a In Complex With M-Iodobenzyl Beta-D-Glucopyranosyl-
Beta(1,4)-D-Xylopyranoside
pdb|1QK0|B Chain B, Cel6a In Complex With M-Iodobenzyl Beta-D-Glucopyranosyl-
Beta(1,4)-D-Xylopyranoside
pdb|1QK2|A Chain A, Wild Type Cel6a With A Non-Hydrolysable Cellotetraose
pdb|1QK2|B Chain B, Wild Type Cel6a With A Non-Hydrolysable Cellotetraose
Length = 363
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 235 SLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFD----GWRRKPAGYDPCASDYTEVYL 290
+L TP C N+ + + + P + D GW PA DP A + VY
Sbjct: 145 NLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYK 204
Query: 291 N--RPDVQKALHANVTN 305
N P + L NV N
Sbjct: 205 NASSPRALRGLATNVAN 221
>pdb|2YGT|A Chain A, Clostridium Perfringens Delta-Toxin
Length = 298
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 360 TLRKLGLKTVEEWKPWYAEKQ----VGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLL 415
T++ ++ W +AE + V W I Y MF+ R +G F P L L
Sbjct: 161 TIQTNDTNSIASWNTEFAETRDGYNVNSWNIVYGNQMFMRSRYSGTSTTNFTPDYQLSSL 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,410,415
Number of Sequences: 62578
Number of extensions: 563477
Number of successful extensions: 1268
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 33
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)