Query 042060
Match_columns 429
No_of_seqs 173 out of 1228
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 13:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1282 Serine carboxypeptidas 100.0 3.3E-96 7E-101 733.5 34.3 382 21-428 22-454 (454)
2 PLN02209 serine carboxypeptida 100.0 1.7E-83 3.7E-88 648.8 35.7 369 21-424 17-437 (437)
3 PLN03016 sinapoylglucose-malat 100.0 1.7E-83 3.6E-88 648.9 35.4 367 21-424 15-433 (433)
4 PF00450 Peptidase_S10: Serine 100.0 2.6E-82 5.7E-87 645.0 27.5 359 33-421 1-415 (415)
5 PTZ00472 serine carboxypeptida 100.0 1.9E-77 4.1E-82 611.8 31.9 346 36-425 41-462 (462)
6 PLN02213 sinapoylglucose-malat 100.0 2.6E-60 5.7E-65 465.7 28.2 284 106-424 2-319 (319)
7 KOG1283 Serine carboxypeptidas 100.0 5.9E-53 1.3E-57 390.9 12.4 354 42-420 3-412 (414)
8 COG2939 Carboxypeptidase C (ca 100.0 2.4E-47 5.1E-52 377.6 19.3 340 38-422 72-491 (498)
9 TIGR03343 biphenyl_bphD 2-hydr 96.9 0.0043 9.4E-08 59.1 8.6 60 337-420 222-281 (282)
10 PRK03204 haloalkane dehalogena 96.6 0.0051 1.1E-07 59.5 6.7 59 338-420 227-286 (286)
11 TIGR02427 protocat_pcaD 3-oxoa 96.5 0.01 2.3E-07 54.3 8.0 60 337-420 192-251 (251)
12 TIGR01738 bioH putative pimelo 96.4 0.0098 2.1E-07 54.4 7.5 59 337-419 187-245 (245)
13 TIGR03056 bchO_mg_che_rel puta 96.4 0.0087 1.9E-07 56.6 7.1 59 338-420 220-278 (278)
14 PRK10673 acyl-CoA esterase; Pr 96.3 0.011 2.4E-07 55.3 7.2 60 338-421 195-254 (255)
15 PRK10349 carboxylesterase BioH 96.3 0.014 3E-07 55.0 7.7 60 337-420 195-254 (256)
16 TIGR03611 RutD pyrimidine util 96.3 0.014 3E-07 54.1 7.6 59 338-420 198-256 (257)
17 PLN02679 hydrolase, alpha/beta 96.2 0.014 3E-07 58.5 7.6 65 338-422 292-357 (360)
18 KOG4178 Soluble epoxide hydrol 96.0 0.016 3.4E-07 56.2 6.3 63 336-421 256-319 (322)
19 PRK07581 hypothetical protein; 95.9 0.027 5.9E-07 55.6 8.0 59 338-420 275-334 (339)
20 TIGR01250 pro_imino_pep_2 prol 95.9 0.028 6E-07 52.8 7.7 62 334-420 227-288 (288)
21 PLN02824 hydrolase, alpha/beta 95.8 0.024 5.2E-07 54.6 7.0 60 338-421 234-293 (294)
22 PRK03592 haloalkane dehalogena 95.8 0.014 2.9E-07 56.4 5.2 64 338-424 228-291 (295)
23 PRK00870 haloalkane dehalogena 95.8 0.027 5.8E-07 54.6 7.3 68 333-422 234-301 (302)
24 PHA02857 monoglyceride lipase; 95.7 0.035 7.5E-07 52.9 7.7 63 336-421 207-272 (276)
25 PRK08775 homoserine O-acetyltr 95.6 0.016 3.5E-07 57.5 5.2 61 338-421 277-338 (343)
26 PLN03084 alpha/beta hydrolase 95.6 0.03 6.5E-07 56.6 7.1 58 338-420 325-382 (383)
27 PLN02965 Probable pheophorbida 95.4 0.04 8.7E-07 52.0 6.8 60 337-420 192-251 (255)
28 TIGR02240 PHA_depoly_arom poly 95.3 0.038 8.2E-07 52.8 6.4 60 338-422 207-266 (276)
29 KOG1454 Predicted hydrolase/ac 95.1 0.055 1.2E-06 53.5 6.9 60 338-421 264-323 (326)
30 PF08386 Abhydrolase_4: TAP-li 95.0 0.11 2.4E-06 42.1 7.4 65 338-426 34-98 (103)
31 PLN02578 hydrolase 94.9 0.092 2E-06 52.4 8.0 59 338-421 296-354 (354)
32 PLN03087 BODYGUARD 1 domain co 94.8 0.11 2.3E-06 54.2 8.1 67 331-421 410-478 (481)
33 PLN02894 hydrolase, alpha/beta 94.5 0.091 2E-06 53.5 7.0 60 338-421 325-384 (402)
34 PLN02385 hydrolase; alpha/beta 94.5 0.095 2.1E-06 52.1 6.8 63 338-422 279-345 (349)
35 PRK00175 metX homoserine O-ace 94.3 0.098 2.1E-06 52.8 6.5 65 338-422 309-374 (379)
36 PRK06765 homoserine O-acetyltr 94.3 0.16 3.4E-06 51.5 7.9 66 337-422 322-388 (389)
37 PF12697 Abhydrolase_6: Alpha/ 94.1 0.09 1.9E-06 47.1 5.4 54 336-413 174-227 (228)
38 TIGR01392 homoserO_Ac_trn homo 94.0 0.091 2E-06 52.3 5.7 63 338-420 288-351 (351)
39 PLN02298 hydrolase, alpha/beta 93.7 0.16 3.5E-06 49.9 6.8 63 338-422 251-317 (330)
40 TIGR03695 menH_SHCHC 2-succiny 93.0 0.27 5.8E-06 44.7 6.7 59 337-420 193-251 (251)
41 PRK06489 hypothetical protein; 93.0 0.34 7.3E-06 48.4 7.8 59 338-421 292-356 (360)
42 PRK14875 acetoin dehydrogenase 92.8 0.32 7E-06 48.3 7.4 59 336-421 312-370 (371)
43 PRK11126 2-succinyl-6-hydroxy- 92.7 0.31 6.8E-06 45.0 6.7 53 338-420 188-240 (242)
44 TIGR01607 PST-A Plasmodium sub 92.4 0.45 9.7E-06 47.1 7.6 62 338-421 270-332 (332)
45 PRK10749 lysophospholipase L2; 91.5 0.47 1E-05 46.7 6.7 68 337-421 258-328 (330)
46 PLN02652 hydrolase; alpha/beta 91.4 0.54 1.2E-05 47.8 7.0 62 338-421 324-386 (395)
47 PF00561 Abhydrolase_1: alpha/ 91.0 0.44 9.5E-06 43.2 5.6 57 336-416 173-229 (230)
48 PLN02980 2-oxoglutarate decarb 90.8 0.56 1.2E-05 56.2 7.4 79 336-427 1566-1644(1655)
49 PLN02511 hydrolase 87.5 0.67 1.4E-05 46.9 4.3 59 338-420 298-363 (388)
50 PRK05855 short chain dehydroge 87.5 0.69 1.5E-05 48.9 4.6 59 338-421 233-291 (582)
51 PRK11460 putative hydrolase; P 86.6 1.2 2.6E-05 41.6 5.2 63 337-419 147-209 (232)
52 PRK10566 esterase; Provisional 86.5 1.2 2.6E-05 41.4 5.3 62 338-421 186-247 (249)
53 KOG4409 Predicted hydrolase/ac 86.5 2.5 5.5E-05 41.6 7.4 72 325-420 291-362 (365)
54 PF00326 Peptidase_S9: Prolyl 86.0 2.2 4.8E-05 38.8 6.6 63 337-419 143-206 (213)
55 PLN02211 methyl indole-3-aceta 85.2 2.8 6.1E-05 40.1 7.1 60 338-422 211-270 (273)
56 TIGR01249 pro_imino_pep_1 prol 84.6 3.4 7.3E-05 40.1 7.5 43 338-404 248-290 (306)
57 PF12695 Abhydrolase_5: Alpha/ 84.2 2.4 5.2E-05 35.4 5.6 46 334-402 100-145 (145)
58 PLN02872 triacylglycerol lipas 83.8 2.9 6.3E-05 42.5 6.8 61 338-421 325-388 (395)
59 PF07519 Tannase: Tannase and 83.2 2.7 6E-05 43.7 6.5 87 328-426 343-431 (474)
60 TIGR03100 hydr1_PEP hydrolase, 83.0 2.9 6.2E-05 40.0 6.1 74 330-420 199-273 (274)
61 COG0596 MhpC Predicted hydrola 81.1 5.5 0.00012 35.6 7.1 63 334-419 217-279 (282)
62 PF03583 LIP: Secretory lipase 80.1 5.7 0.00012 38.5 7.1 69 338-426 219-289 (290)
63 KOG2382 Predicted alpha/beta h 78.8 4.5 9.7E-05 39.5 5.8 61 337-421 252-312 (315)
64 PF02230 Abhydrolase_2: Phosph 76.2 4.6 9.9E-05 37.0 4.9 59 338-420 155-213 (216)
65 COG0400 Predicted esterase [Ge 74.9 4.5 9.8E-05 37.2 4.5 60 337-421 145-204 (207)
66 PRK10985 putative hydrolase; P 73.5 11 0.00024 36.9 7.1 46 338-407 255-300 (324)
67 TIGR01836 PHA_synth_III_C poly 73.5 7 0.00015 38.7 5.8 60 338-420 286-348 (350)
68 PF10340 DUF2424: Protein of u 72.8 3.7 8E-05 41.2 3.5 26 56-82 105-132 (374)
69 KOG1515 Arylacetamide deacetyl 72.3 21 0.00046 35.4 8.7 122 44-176 63-211 (336)
70 PRK13604 luxD acyl transferase 67.2 13 0.00028 36.4 5.8 46 338-405 202-247 (307)
71 TIGR01838 PHA_synth_I poly(R)- 66.7 8.5 0.00018 40.7 4.9 48 338-409 415-462 (532)
72 KOG1552 Predicted alpha/beta h 66.5 10 0.00022 35.8 4.8 60 338-421 192-251 (258)
73 COG1506 DAP2 Dipeptidyl aminop 66.2 12 0.00027 40.4 6.1 60 338-419 551-610 (620)
74 COG2267 PldB Lysophospholipase 64.8 15 0.00034 35.6 6.0 65 336-422 226-294 (298)
75 PF08840 BAAT_C: BAAT / Acyl-C 64.6 10 0.00022 34.9 4.5 55 337-409 114-170 (213)
76 PRK05077 frsA fermentation/res 58.5 27 0.00058 35.7 6.7 58 338-422 355-412 (414)
77 PF00681 Plectin: Plectin repe 49.7 13 0.00027 25.1 1.8 32 170-201 12-43 (45)
78 PF06821 Ser_hydrolase: Serine 47.6 33 0.00073 30.3 4.7 42 339-405 115-156 (171)
79 PF09292 Neil1-DNA_bind: Endon 39.5 18 0.00038 23.3 1.1 12 71-82 24-35 (39)
80 COG4099 Predicted peptidase [G 39.4 37 0.00081 33.0 3.8 29 52-80 169-200 (387)
81 PRK11071 esterase YqiA; Provis 39.2 75 0.0016 28.4 5.8 55 337-420 135-189 (190)
82 COG1073 Hydrolases of the alph 37.7 93 0.002 28.8 6.5 61 339-421 233-296 (299)
83 PF15253 STIL_N: SCL-interrupt 36.1 42 0.00092 34.0 3.8 35 42-79 200-235 (410)
84 COG1506 DAP2 Dipeptidyl aminop 36.0 56 0.0012 35.3 5.1 106 53-177 374-512 (620)
85 KOG2551 Phospholipase/carboxyh 34.8 1.2E+02 0.0026 28.2 6.2 57 338-419 163-221 (230)
86 PF15613 WHIM2: WSTF, HB1, Itc 34.5 78 0.0017 20.6 3.6 28 55-82 11-38 (38)
87 PF03959 FSH1: Serine hydrolas 34.0 36 0.00079 31.1 2.9 48 338-409 161-208 (212)
88 PRK07868 acyl-CoA synthetase; 33.6 73 0.0016 36.6 5.8 60 338-421 297-360 (994)
89 PF07849 DUF1641: Protein of u 32.3 17 0.00037 24.2 0.3 16 286-301 16-31 (42)
90 TIGR01840 esterase_phb esteras 31.7 43 0.00092 30.4 2.9 27 339-365 169-195 (212)
91 PF10503 Esterase_phd: Esteras 31.0 50 0.0011 30.6 3.2 27 338-364 169-195 (220)
92 PLN02442 S-formylglutathione h 29.8 79 0.0017 30.2 4.6 49 336-404 215-264 (283)
93 KOG3079 Uridylate kinase/adeny 24.2 45 0.00097 30.1 1.5 14 69-82 5-18 (195)
94 COG3208 GrsT Predicted thioest 24.2 1.8E+02 0.0039 27.4 5.5 59 338-420 176-234 (244)
95 PF01738 DLH: Dienelactone hyd 23.8 3.6E+02 0.0077 24.2 7.6 67 333-419 140-211 (218)
96 PF03096 Ndr: Ndr family; Int 22.9 32 0.00068 33.2 0.4 62 338-423 219-280 (283)
97 COG4569 MhpF Acetaldehyde dehy 21.3 81 0.0018 28.8 2.6 27 382-408 257-283 (310)
98 cd00412 pyrophosphatase Inorga 21.0 2.1E+02 0.0046 25.0 5.0 69 61-139 44-133 (155)
99 PF08060 NOSIC: NOSIC (NUC001) 20.7 91 0.002 21.8 2.3 22 116-137 14-36 (53)
100 PF06309 Torsin: Torsin; Inte 20.6 89 0.0019 26.3 2.6 17 68-84 49-65 (127)
101 TIGR01840 esterase_phb esteras 20.4 88 0.0019 28.2 2.8 15 68-82 10-24 (212)
No 1
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-96 Score=733.45 Aligned_cols=382 Identities=44% Similarity=0.764 Sum_probs=341.3
Q ss_pred ccccccCccccCCCCC-CCCCceeeeeEeecCCCCeeEEEEEEecCCCCCCCCeEEEecCCCC----------CCCcccc
Q 042060 21 SAQQEADRVIKLPGQP-EVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNGVFL----------DKPYTNR 89 (429)
Q Consensus 21 ~~~~~~~~v~~lpg~~-~~~~~~ysGyl~v~~~~~~~lfywf~es~~~p~~~PlvlWlnGGPG----------~GP~~~~ 89 (429)
...++.++|+.|||++ +++|++|||||+|+++.+++||||||||+++|++|||||||||||| +|||+++
T Consensus 22 ~~~~~~~~I~~LPG~~~~~~f~~ysGYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~ 101 (454)
T KOG1282|consen 22 HHVDEADLIKSLPGQPGPLPFKQYSGYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSLGGLFEENGPFRVK 101 (454)
T ss_pred cccchhhhhhcCCCCCCCCCcccccceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccchhhhhhhcCCeEEc
Confidence 4566789999999997 5899999999999988899999999999999999999999999999 9999999
Q ss_pred C-CCCccccCCcccccc-ceEEEE------------------cCcHHHHHHHHhhhHHHHHhcccccCCcc---------
Q 042060 90 H-IPIIPHLIYCTFWLC-ASILFA------------------YGPKLAASIFSHNPLSYHLRMHRNLECDM--------- 140 (429)
Q Consensus 90 ~-~~~l~~N~~~~SW~~-anvL~i------------------~~~~~~a~d~~~fL~~F~~~fPe~~~~~~--------- 140 (429)
. |.+|..||| |||| |||||| ++|+.+|+|++.||++||++||||++|||
T Consensus 102 ~~G~tL~~N~y--SWnk~aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG 179 (454)
T KOG1282|consen 102 YNGKTLYLNPY--SWNKEANILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAG 179 (454)
T ss_pred CCCCcceeCCc--cccccccEEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccc
Confidence 7 678999999 9999 999999 47899999999999999999999999999
Q ss_pred ----eeeHHHHHhcccccccCcceeeeeeeecCcccCcccccchhhHHhhhccCCChHHHHHHhhhccccc---cccCCC
Q 042060 141 ----QLGIGVIFDSNKIASQENHINLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKRECNFSI---AHVDKV 213 (429)
Q Consensus 141 ----~l~a~~I~~~n~~~~~~~~inLkGi~IGNg~~dp~~~~~~~~~~~~~~gli~~~~~~~~~~~C~~~~---~~~~~~ 213 (429)
+| |++|++.|+... .+.|||||++||||++|+..|..++++|++.||+|++++++.+++.|.... ..+...
T Consensus 180 ~YVP~L-a~~I~~~N~~~~-~~~iNLkG~~IGNg~td~~~~~~~~~~~a~~h~liSde~~~~l~~~C~~~~~~~~~~~~~ 257 (454)
T KOG1282|consen 180 HYVPAL-AQEILKGNKKCC-KPNINLKGYAIGNGLTDPEIDYNGRIPFAWGHGLISDELYESLKRACDFSSDNYANVDPS 257 (454)
T ss_pred eehHHH-HHHHHhcccccc-CCcccceEEEecCcccCccccccchhhhhhhcccCCHHHHHHHHHHhccCcccccccCCc
Confidence 66 999999997542 268999999999999999999999999999999999999999999998743 234455
Q ss_pred hhhHHHHHHHHH-HHcCCCCcccCCCCCCCCCccccccccCcccccccCcccccccCCCCCCCCCCCCCCcchhhhccCh
Q 042060 214 SENCSLALDGYF-AVYKIIDMYSLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFDGWRRKPAGYDPCASDYTEVYLNR 292 (429)
Q Consensus 214 ~~~C~~~~~~~~-~~~~~~n~Ydi~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ylN~ 292 (429)
+..|..+++.+. ...+++|.|+++.+.|..... .. ........+++|..++.++|||+
T Consensus 258 ~~~C~~~~~~~~~~~~~~i~~y~i~~~~C~~~~~-----------------~~----~~~~~~~~~~~c~~~~~~~ylN~ 316 (454)
T KOG1282|consen 258 NTKCNKAVEEFDSKTTGDIDNYYILTPDCYPTSY-----------------EL----KKPTDCYGYDPCLSDYAEKYLNR 316 (454)
T ss_pred hhHHHHHHHHHHHHHhccCchhhhcchhhccccc-----------------cc----cccccccccCCchhhhHHHhcCC
Confidence 789999999988 556789999999999985210 00 00111225689988877999999
Q ss_pred HHHHHhhCCCCCCCCCCceecccccc-cccCCCCChHHHHHHHHhCC-ceEEEEecCCCCCCCchhHHHHHHHcCCCCcc
Q 042060 293 PDVQKALHANVTNIPYPWTHCSDKIS-FWSDAPPSILPIIKKLIRGG-LRVWVYSGDTDGRIPVTATRYTLRKLGLKTVE 370 (429)
Q Consensus 293 ~~Vr~AL~v~~~~~~~~w~~cs~~v~-~~~d~~~~~~~~~~~LL~~~-irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~ 370 (429)
++||+||||+..... .|+.||+.|. .|.+...+++|.+.+++.++ +|||||+||.|++||++||++||++|++....
T Consensus 317 ~~VrkALh~~~~~~~-~W~~Cn~~v~~~~~~~~~sm~p~~~~~~~~~~~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~ 395 (454)
T KOG1282|consen 317 PEVRKALHANKTSIG-KWERCNDEVNYNYNDDIKSMLPIHKKLIASGGYRVLIYSGDHDLVVPFLGTQAWIKSLNLSITD 395 (454)
T ss_pred HHHHHHhCCCCCCCC-cccccChhhhcccccCccchHHHHHHHhhcCceEEEEEeCCcceeCcchhhHHHHHhccCcccc
Confidence 999999999874222 7999999996 68889999999999999855 99999999999999999999999999999999
Q ss_pred ccccceeC-CeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHHHHcCCCCCCCC
Q 042060 371 EWKPWYAE-KQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRHFLANKKLPSKP 428 (429)
Q Consensus 371 ~~~~w~~~-~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~fi~~~~l~~~~ 428 (429)
+|+||+++ +|+|||+++|++|+|+||+|||||||+|||++|++||++||.|+++++++
T Consensus 396 ~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~fl~g~~l~~~~ 454 (454)
T KOG1282|consen 396 EWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQRFLNGQPLPSTP 454 (454)
T ss_pred CccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHHHHcCCCCCCCC
Confidence 99999996 89999999999999999999999999999999999999999999998764
No 2
>PLN02209 serine carboxypeptidase
Probab=100.00 E-value=1.7e-83 Score=648.76 Aligned_cols=369 Identities=26% Similarity=0.479 Sum_probs=310.6
Q ss_pred ccccccCccccCCCCC-CCCCceeeeeEeecCCCCeeEEEEEEecCCCCCCCCeEEEecCCCC----------CCCcccc
Q 042060 21 SAQQEADRVIKLPGQP-EVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNGVFL----------DKPYTNR 89 (429)
Q Consensus 21 ~~~~~~~~v~~lpg~~-~~~~~~ysGyl~v~~~~~~~lfywf~es~~~p~~~PlvlWlnGGPG----------~GP~~~~ 89 (429)
.++++.++|++|||++ ++++++|||||+|+++.+++||||||||+++|+++||+|||||||| +|||+++
T Consensus 17 ~~~~~~~~v~~lpg~~~~~~~~~~sGy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~ 96 (437)
T PLN02209 17 HHVRSGSIVKFLPGFKGPLPFELETGYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALK 96 (437)
T ss_pred ccCCccCeeecCCCCCCCCCeeEEEEEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHhhhHHHhcCCceec
Confidence 3567889999999994 6889999999999876789999999999999999999999999999 9999998
Q ss_pred CC------CCccccCCcccccc-ceEEEE-----------------cCcHHHHHHHHhhhHHHHHhcccccCCcc-----
Q 042060 90 HI------PIIPHLIYCTFWLC-ASILFA-----------------YGPKLAASIFSHNPLSYHLRMHRNLECDM----- 140 (429)
Q Consensus 90 ~~------~~l~~N~~~~SW~~-anvL~i-----------------~~~~~~a~d~~~fL~~F~~~fPe~~~~~~----- 140 (429)
.+ .++++||| |||+ |||||| .+++++|+++++||+.||++||+|+++||
T Consensus 97 ~~~~~~~~~~l~~n~~--sW~~~anllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GE 174 (437)
T PLN02209 97 NKVYNGSVPSLVSTTY--SWTKTANIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGD 174 (437)
T ss_pred cCCCCCCcccceeCCC--chhhcCcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEec
Confidence 63 47999999 9999 999999 23567889999999999999999999999
Q ss_pred --------eeeHHHHHhcccccccCcceeeeeeeecCcccCcccccchhhHHhhhccCCChHHHHHHhhhccccccccCC
Q 042060 141 --------QLGIGVIFDSNKIASQENHINLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKRECNFSIAHVDK 212 (429)
Q Consensus 141 --------~l~a~~I~~~n~~~~~~~~inLkGi~IGNg~~dp~~~~~~~~~~~~~~gli~~~~~~~~~~~C~~~~~~~~~ 212 (429)
.+ |.+|+++|++.. .++||||||+|||||+||..|..++.+|++.+|||++++++.+++.|......+++
T Consensus 175 SYaG~yvP~~-a~~i~~~~~~~~-~~~inl~Gi~igng~td~~~q~~~~~~y~~~~glI~~~~~~~~~~~c~~~~~~~~~ 252 (437)
T PLN02209 175 SYSGMIVPAL-VHEISKGNYICC-NPPINLQGYVLGNPITHIEFEQNFRIPYAHGMSLISDELYESLKRICKGNYFSVDP 252 (437)
T ss_pred CcCceehHHH-HHHHHhhccccc-CCceeeeeEEecCcccChhhhhhhHHHHHhccCCCCHHHHHHHHHhcccccccCCC
Confidence 56 899998876432 26799999999999999999999999999999999999999999999753322334
Q ss_pred ChhhHHHHHHHHHHHcCCCCcccCCCCCCCCCccccccccCcccccccCcccccccCCCCCCCCCCCCCCc---chhhhc
Q 042060 213 VSENCSLALDGYFAVYKIIDMYSLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFDGWRRKPAGYDPCAS---DYTEVY 289 (429)
Q Consensus 213 ~~~~C~~~~~~~~~~~~~~n~Ydi~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---~~~~~y 289 (429)
.+..|.+++.........+|.|++....|.... . +. ...+|.. ..+..|
T Consensus 253 ~~~~C~~~i~~~~~~~~~~~~~~~~~~~c~~~~------------------~-------~~---~~~~c~~~~~~~~~~y 304 (437)
T PLN02209 253 SNKKCLKLVEEYHKCTDNINSHHTLIANCDDSN------------------T-------QH---ISPDCYYYPYHLVECW 304 (437)
T ss_pred ChHHHHHHHHHHHHHhhcCCccccccccccccc------------------c-------cc---CCCCcccccHHHHHHH
Confidence 567899888876655667888876555575321 0 00 1234643 246889
Q ss_pred cChHHHHHhhCCCCCCCCCCceecccccccccCCCCChHHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCc
Q 042060 290 LNRPDVQKALHANVTNIPYPWTHCSDKISFWSDAPPSILPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTV 369 (429)
Q Consensus 290 lN~~~Vr~AL~v~~~~~~~~w~~cs~~v~~~~d~~~~~~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~ 369 (429)
||+++||+||||+... ...|..|+..+. +.....++++.+.++|.+|+|||||+||.|++||++|+++|+++|+|++.
T Consensus 305 lN~~~V~~aL~v~~~~-~~~w~~~~~~~~-~~~d~~~~~~~~~~~l~~girVLiY~GD~D~icn~~Gte~wi~~L~w~~~ 382 (437)
T PLN02209 305 ANNESVREALHVDKGS-IGEWIRDHRGIP-YKSDIRSSIPYHMNNSINGYRSLIFSGDHDITMPFQATQAWIKSLNYSII 382 (437)
T ss_pred hCCHHHHHHhCCCCCC-CCCCccccchhh-cccchhhhHHHHHHHHhcCceEEEEECCccccCCcHhHHHHHHhcCCccC
Confidence 9999999999998421 347999987654 33333345555556666799999999999999999999999999999999
Q ss_pred cccccceeCCeeeEEEEEeCC-eEEEEEcCCCccCCCCChHHHHHHHHHHHcCCCC
Q 042060 370 EEWKPWYAEKQVGGWTIEYDG-LMFVTVRGAGHQVPTFAPKQSLQLLRHFLANKKL 424 (429)
Q Consensus 370 ~~~~~w~~~~~~~G~~k~~~~-Ltf~~V~gAGHmVP~dqP~~a~~m~~~fi~~~~l 424 (429)
++|++|+++++++||+|+|++ |||++|+||||||| +||++|++||++||.+++|
T Consensus 383 ~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~~fi~~~~l 437 (437)
T PLN02209 383 DDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQRWISGQPL 437 (437)
T ss_pred CCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999996 99999999999998 7999999999999999875
No 3
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=100.00 E-value=1.7e-83 Score=648.87 Aligned_cols=367 Identities=27% Similarity=0.504 Sum_probs=314.4
Q ss_pred ccccccCccccCCCC-CCCCCceeeeeEeecCCCCeeEEEEEEecCCCCCCCCeEEEecCCCC----------CCCcccc
Q 042060 21 SAQQEADRVIKLPGQ-PEVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNGVFL----------DKPYTNR 89 (429)
Q Consensus 21 ~~~~~~~~v~~lpg~-~~~~~~~ysGyl~v~~~~~~~lfywf~es~~~p~~~PlvlWlnGGPG----------~GP~~~~ 89 (429)
.++.+.+.|++|||+ +++++++|||||+|+++.+++||||||||+++|+++||||||||||| +|||+++
T Consensus 15 ~~~~~~~~v~~lpg~~~~~~~~~~sGy~~v~~~~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~ 94 (433)
T PLN03016 15 HHVDSASIVKFLPGFEGPLPFELETGYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLK 94 (433)
T ss_pred hcccccCeeecCcCCCCCCCeeEEEEEEEecCCCCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHHHHHHHhcCCceee
Confidence 445677889999999 46889999999999876688999999999999999999999999999 9999986
Q ss_pred C------CCCccccCCcccccc-ceEEEE-----------------cCcHHHHHHHHhhhHHHHHhcccccCCcc-----
Q 042060 90 H------IPIIPHLIYCTFWLC-ASILFA-----------------YGPKLAASIFSHNPLSYHLRMHRNLECDM----- 140 (429)
Q Consensus 90 ~------~~~l~~N~~~~SW~~-anvL~i-----------------~~~~~~a~d~~~fL~~F~~~fPe~~~~~~----- 140 (429)
. +.++++||+ |||+ |||||| .++.++|+++++||++||++||+|+++||
T Consensus 95 ~~~~~~~~~~l~~n~~--sW~~~anllfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GE 172 (433)
T PLN03016 95 FEVFNGSAPSLFSTTY--SWTKMANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGD 172 (433)
T ss_pred ccccCCCCCceeeCCC--chhhcCcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEcc
Confidence 3 258899999 9999 999999 23567789999999999999999999999
Q ss_pred --------eeeHHHHHhcccccccCcceeeeeeeecCcccCcccccchhhHHhhhccCCChHHHHHHhhhccccccccCC
Q 042060 141 --------QLGIGVIFDSNKIASQENHINLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKRECNFSIAHVDK 212 (429)
Q Consensus 141 --------~l~a~~I~~~n~~~~~~~~inLkGi~IGNg~~dp~~~~~~~~~~~~~~gli~~~~~~~~~~~C~~~~~~~~~ 212 (429)
++ |.+|+++|++.. .++||||||+||||+++|..|..++.+|+|++|||++++++.+++.|......+++
T Consensus 173 SYaG~yvP~l-a~~i~~~n~~~~-~~~inLkGi~iGNg~t~~~~~~~~~~~y~~~~glI~~~~~~~i~~~c~~~~~~~~~ 250 (433)
T PLN03016 173 SYSGMIVPAL-VQEISQGNYICC-EPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDP 250 (433)
T ss_pred CccceehHHH-HHHHHhhccccc-CCcccceeeEecCCCcCchhhhhhHHHHHHhcCCCCHHHHHHHHHHhccccccCCC
Confidence 56 999998886532 26799999999999999999999999999999999999999999999754433445
Q ss_pred ChhhHHHHHHHHHHHcCCCCcccCCCCCCCCCccccccccCcccccccCcccccccCCCCCCCCCCCCCCc---chhhhc
Q 042060 213 VSENCSLALDGYFAVYKIIDMYSLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFDGWRRKPAGYDPCAS---DYTEVY 289 (429)
Q Consensus 213 ~~~~C~~~~~~~~~~~~~~n~Ydi~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---~~~~~y 289 (429)
.+..|..++..+....+.+|+||++.+.|... +.. ...|.. ..++.|
T Consensus 251 ~~~~C~~~~~~~~~~~~~~n~yni~~~~~~~~----------------------------~~~--~~~c~~~~~~~~~~y 300 (433)
T PLN03016 251 SNTQCLKLTEEYHKCTAKINIHHILTPDCDVT----------------------------NVT--SPDCYYYPYHLIECW 300 (433)
T ss_pred chHHHHHHHHHHHHHhcCCChhhccCCccccc----------------------------ccC--CCcccccchHHHHHH
Confidence 67889999888777778899999997756321 011 134654 245789
Q ss_pred cChHHHHHhhCCCCCCCCCCceecccccccccCCCCChHHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCc
Q 042060 290 LNRPDVQKALHANVTNIPYPWTHCSDKISFWSDAPPSILPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTV 369 (429)
Q Consensus 290 lN~~~Vr~AL~v~~~~~~~~w~~cs~~v~~~~d~~~~~~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~ 369 (429)
||+++||+||||+... ..+|+.||..|. +.....+.++.+.+++.+++|||||+||.|++||++|+++||++|+|++.
T Consensus 301 lN~~~V~~aL~v~~~~-~~~w~~cn~~v~-~~~d~~~~~~~~~~~l~~~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~ 378 (433)
T PLN03016 301 ANDESVREALHIEKGS-KGKWARCNRTIP-YNHDIVSSIPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPI 378 (433)
T ss_pred hCCHHHHHHhCCCCCC-CCCCccCCcccc-cccccchhhHHHHHHHhcCceEEEEECCccccCCcHhHHHHHHhCCCCCC
Confidence 9999999999998521 358999999986 33333355666666666799999999999999999999999999999999
Q ss_pred cccccceeCCeeeEEEEEeCC-eEEEEEcCCCccCCCCChHHHHHHHHHHHcCCCC
Q 042060 370 EEWKPWYAEKQVGGWTIEYDG-LMFVTVRGAGHQVPTFAPKQSLQLLRHFLANKKL 424 (429)
Q Consensus 370 ~~~~~w~~~~~~~G~~k~~~~-Ltf~~V~gAGHmVP~dqP~~a~~m~~~fi~~~~l 424 (429)
++|++|+++++++||+|+|++ |||++|++|||||| +||++|++|+++||.+++|
T Consensus 379 ~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~~Fi~~~~l 433 (433)
T PLN03016 379 HNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQRWISGQPL 433 (433)
T ss_pred CCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999986 99999999999998 7999999999999999875
No 4
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=100.00 E-value=2.6e-82 Score=645.02 Aligned_cols=359 Identities=35% Similarity=0.625 Sum_probs=293.7
Q ss_pred CCCC-CCCCceeeeeEeecCCCCeeEEEEEEecCCCCCCCCeEEEecCCCC----------CCCccccC--CCCccccCC
Q 042060 33 PGQP-EVKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNGVFL----------DKPYTNRH--IPIIPHLIY 99 (429)
Q Consensus 33 pg~~-~~~~~~ysGyl~v~~~~~~~lfywf~es~~~p~~~PlvlWlnGGPG----------~GP~~~~~--~~~l~~N~~ 99 (429)
||++ ++++++|||||+|+++.+++||||||||+++|+++||||||||||| +|||+++. ..+++.|||
T Consensus 1 pg~~~~~~~~~~sGyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~ 80 (415)
T PF00450_consen 1 PGLDEPVPFKQYSGYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPY 80 (415)
T ss_dssp TT-SS-SSSEEEEEEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT
T ss_pred CCCCCCCCceEEEEEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceeccccccccccCceEEeeccccccccccc
Confidence 7875 5789999999999977889999999999999999999999999999 99999993 589999999
Q ss_pred cccccc-ceEEEE------------------cCcHHHHHHHHhhhHHHHHhcccccCCcc-------------eeeHHHH
Q 042060 100 CTFWLC-ASILFA------------------YGPKLAASIFSHNPLSYHLRMHRNLECDM-------------QLGIGVI 147 (429)
Q Consensus 100 ~~SW~~-anvL~i------------------~~~~~~a~d~~~fL~~F~~~fPe~~~~~~-------------~l~a~~I 147 (429)
|||+ |||||| ++++++|+++++||++||.+||+|+++|| .+ |.+|
T Consensus 81 --sW~~~an~l~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~-a~~i 157 (415)
T PF00450_consen 81 --SWNKFANLLFIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPAL-ASYI 157 (415)
T ss_dssp ---GGGTSEEEEE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHH-HHHH
T ss_pred --ccccccceEEEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhh-HHhh
Confidence 9999 999999 36899999999999999999999999999 66 9999
Q ss_pred HhcccccccCcceeeeeeeecCcccCcccccchhhHHhhhccCCChHHHHHHhhhccccccccCCChhhHHHHHHHHHH-
Q 042060 148 FDSNKIASQENHINLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKRECNFSIAHVDKVSENCSLALDGYFA- 226 (429)
Q Consensus 148 ~~~n~~~~~~~~inLkGi~IGNg~~dp~~~~~~~~~~~~~~gli~~~~~~~~~~~C~~~~~~~~~~~~~C~~~~~~~~~- 226 (429)
++++++... ++||||||+|||||+||..|..++.+|++.+|+|++++++.+.+.|... ..|......|..+...+..
T Consensus 158 ~~~~~~~~~-~~inLkGi~IGng~~dp~~~~~s~~~~~~~~gli~~~~~~~~~~~~~~~-~~~~~~~~~c~~~~~~~~~~ 235 (415)
T PF00450_consen 158 LQQNKKGDQ-PKINLKGIAIGNGWIDPRIQYNSYADYAYYHGLIDDQQYDDLNKACEAC-PQCQKAITECAAALDELSCQ 235 (415)
T ss_dssp HHHTCC--S-TTSEEEEEEEESE-SBHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHTTS-HSSSCCHHHHHHHHHHHHHH
T ss_pred hhccccccc-cccccccceecCccccccccceeecccccccCcccHHHHHHHHHHhhcc-ccccchhhHHHHHHHhhhhh
Confidence 999976533 5799999999999999999999999999999999999999999998654 2234567889988877664
Q ss_pred -----HcCCCCcccCCCCCCCCCccccccccCcccccccCcccccccCCCCCCCCCCCCCCcchhhhccChHHHHHhhCC
Q 042060 227 -----VYKIIDMYSLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFDGWRRKPAGYDPCASDYTEVYLNRPDVQKALHA 301 (429)
Q Consensus 227 -----~~~~~n~Ydi~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ylN~~~Vr~AL~v 301 (429)
..+++|+||++.+ |...... .+.......++....+..|||+++||+||||
T Consensus 236 ~~~~~~~~~~n~Ydi~~~-~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~yln~~~Vr~aL~v 291 (415)
T PF00450_consen 236 YAISQCNGGINPYDIRQP-CYNPSRS-----------------------SYDNSPSNDPPDDDYLEAYLNRPDVREALHV 291 (415)
T ss_dssp CHHHHHHTTSETTSTTSE-ETT-SHC-----------------------TTCCCCTTTTTCHHHHHHHHTSHHHHHHTT-
T ss_pred cccccccCCcceeeeecc-ccccccc-----------------------cccccccccccchhhHHHHhccHHHHHhhCC
Confidence 3478999999999 5321000 0011111223334567899999999999999
Q ss_pred CCCCCCCCceeccccc-c--cccCCCCChHHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCcccccccee-
Q 042060 302 NVTNIPYPWTHCSDKI-S--FWSDAPPSILPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYA- 377 (429)
Q Consensus 302 ~~~~~~~~w~~cs~~v-~--~~~d~~~~~~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~- 377 (429)
+.. ....|+.|++.| . .+.+.+.++.+.++.||++++|||||+||.|++||+.|+++||++|+|+++++|++|..
T Consensus 292 ~~~-~~~~w~~~~~~V~~~~~~~d~~~~~~~~l~~lL~~~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~ 370 (415)
T PF00450_consen 292 PVD-SNVNWQSCNDAVNFNWLYDDFMPSSIPDLPELLDNGIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRK 370 (415)
T ss_dssp STT-TSSS--SB-HHHHHHCCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEE
T ss_pred Ccc-cCCcccccCcccccccccccccccchhhhhhhhhccceeEEeccCCCEEEEeccchhhhhccccCccccccccccc
Confidence 731 146999999988 3 45677899999999999999999999999999999999999999999999999999988
Q ss_pred -CCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHHHHcC
Q 042060 378 -EKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRHFLAN 421 (429)
Q Consensus 378 -~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~fi~~ 421 (429)
+++++||+|++++|||++|++||||||+|||++|++||++||+|
T Consensus 371 ~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~~~fl~g 415 (415)
T PF00450_consen 371 VNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMFRRFLKG 415 (415)
T ss_dssp TTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHHHHCT
T ss_pred ccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999986
No 5
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=100.00 E-value=1.9e-77 Score=611.83 Aligned_cols=346 Identities=25% Similarity=0.396 Sum_probs=294.5
Q ss_pred CCCCCceeeeeEeecC-CCCeeEEEEEEecCCCCCCCCeEEEecCCCC----------CCCccccC-CCCccccCCcccc
Q 042060 36 PEVKFKQYAGYVTVNE-SHGRALFYWFFEASSKPEEKPLLLWLNGVFL----------DKPYTNRH-IPIIPHLIYCTFW 103 (429)
Q Consensus 36 ~~~~~~~ysGyl~v~~-~~~~~lfywf~es~~~p~~~PlvlWlnGGPG----------~GP~~~~~-~~~l~~N~~~~SW 103 (429)
++.++++|||||+|++ ..+++||||||||+++|+++||+|||||||| ||||+++. +.+++.||| ||
T Consensus 41 ~~~~~~~~sGy~~v~~~~~~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~--sW 118 (462)
T PTZ00472 41 CDPSVNQWSGYFDIPGNQTDKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTY--SW 118 (462)
T ss_pred cCCCCcceeEEEEeCCCCCCceEEEEEEEcCCCCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCc--cc
Confidence 3678999999999974 4578999999999999999999999999999 99999998 478999999 99
Q ss_pred cc-ceEEEE-----------------cCcHHHHHHHHhhhHHHHHhcccccCCcc-------------eeeHHHHHhccc
Q 042060 104 LC-ASILFA-----------------YGPKLAASIFSHNPLSYHLRMHRNLECDM-------------QLGIGVIFDSNK 152 (429)
Q Consensus 104 ~~-anvL~i-----------------~~~~~~a~d~~~fL~~F~~~fPe~~~~~~-------------~l~a~~I~~~n~ 152 (429)
|+ +||||| .+++++|+|+++||+.||++||+++.++| .+ |.+|+++|+
T Consensus 119 ~~~~~~l~iDqP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~-a~~i~~~n~ 197 (462)
T PTZ00472 119 NNEAYVIYVDQPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPAT-AYRINMGNK 197 (462)
T ss_pred ccccCeEEEeCCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHH-HHHHHhhcc
Confidence 99 999999 24689999999999999999999999999 56 899999887
Q ss_pred ccccCcceeeeeeeecCcccCcccccchhhHHhhh-------ccCCChHHHHHHhh---hccccccccCC----ChhhHH
Q 042060 153 IASQENHINLKGFAVGNALLDDETDQTGMIDYAWD-------HAVISDRLYHDIKR---ECNFSIAHVDK----VSENCS 218 (429)
Q Consensus 153 ~~~~~~~inLkGi~IGNg~~dp~~~~~~~~~~~~~-------~gli~~~~~~~~~~---~C~~~~~~~~~----~~~~C~ 218 (429)
++. ..+||||||+|||||+||..|+.++.+|+|. +|+|++++++++++ .|......|.. ....|.
T Consensus 198 ~~~-~~~inLkGi~IGNg~~dp~~q~~~~~~~a~~~~~~~~~~~li~~~~~~~~~~~~~~c~~~~~~c~~~~~~~~~~c~ 276 (462)
T PTZ00472 198 KGD-GLYINLAGLAVGNGLTDPYTQYASYPRLAWDWCKEKLGAPCVSEEAYDEMSSMVPACQKKIKECNSNPDDADSSCS 276 (462)
T ss_pred ccC-CceeeeEEEEEeccccChhhhcccHHHHhhhcccccCCCCccCHHHHHHHHHHHHHHHHHHHhccccCCCcchHHH
Confidence 543 2679999999999999999999999999996 58999999988875 35322222211 233454
Q ss_pred HHHHHHHH-----HcCCCCcccCCCCCCCCCccccccccCcccccccCcccccccCCCCCCCCCCCCCCc-chhhhccCh
Q 042060 219 LALDGYFA-----VYKIIDMYSLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFDGWRRKPAGYDPCAS-DYTEVYLNR 292 (429)
Q Consensus 219 ~~~~~~~~-----~~~~~n~Ydi~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~~~~~ylN~ 292 (429)
.+...|.. ..+++|+||++.+ |.. ++|.+ ..+++|||+
T Consensus 277 ~a~~~c~~~~~~~~~~g~n~Ydi~~~-c~~-----------------------------------~~c~~~~~~~~yLN~ 320 (462)
T PTZ00472 277 VARALCNEYIAVYSATGLNNYDIRKP-CIG-----------------------------------PLCYNMDNTIAFMNR 320 (462)
T ss_pred HHHHHHHHHHHHHHhcCCChhheecc-CCC-----------------------------------CCccCHHHHHHHhCC
Confidence 43332221 1367999999988 742 24654 457899999
Q ss_pred HHHHHhhCCCCCCCCCCceecccccc--cccCCCCChHHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCcc
Q 042060 293 PDVQKALHANVTNIPYPWTHCSDKIS--FWSDAPPSILPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVE 370 (429)
Q Consensus 293 ~~Vr~AL~v~~~~~~~~w~~cs~~v~--~~~d~~~~~~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~ 370 (429)
++||+||||+. .+|+.|+..|+ +..|.+.++.+.++.||++|+|||||+||.|++||+.|+++|+++|+|++.+
T Consensus 321 ~~Vq~AL~v~~----~~w~~c~~~V~~~~~~D~~~~~~~~l~~LL~~gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~ 396 (462)
T PTZ00472 321 EDVQSSLGVKP----ATWQSCNMEVNLMFEMDWMKNFNYTVPGLLEDGVRVMIYAGDMDFICNWIGNKAWTLALQWPGNA 396 (462)
T ss_pred HHHHHHhCCCC----CCceeCCHHHHHHhhhccccchHHHHHHHHhcCceEEEEECCcCeecCcHhHHHHHHhCCCCCcc
Confidence 99999999974 48999999996 3357778899999999999999999999999999999999999999999976
Q ss_pred cc-----ccc-eeCCeeeEEEEEeC-----CeEEEEEcCCCccCCCCChHHHHHHHHHHHcCCCCC
Q 042060 371 EW-----KPW-YAEKQVGGWTIEYD-----GLMFVTVRGAGHQVPTFAPKQSLQLLRHFLANKKLP 425 (429)
Q Consensus 371 ~~-----~~w-~~~~~~~G~~k~~~-----~Ltf~~V~gAGHmVP~dqP~~a~~m~~~fi~~~~l~ 425 (429)
+| ++| .++++++||+|+++ +|+|++|++||||||+|||+++++|+++|+.++++.
T Consensus 397 ~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~d~P~~~~~~i~~fl~~~~~~ 462 (462)
T PTZ00472 397 EFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPMDQPAVALTMINRFLRNRPLS 462 (462)
T ss_pred chhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChhhHHHHHHHHHHHHHcCCCCC
Confidence 55 799 56889999999999 999999999999999999999999999999998763
No 6
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=100.00 E-value=2.6e-60 Score=465.70 Aligned_cols=284 Identities=26% Similarity=0.483 Sum_probs=238.3
Q ss_pred ceEEEE-----------------cCcHHHHHHHHhhhHHHHHhcccccCCcc-------------eeeHHHHHhcccccc
Q 042060 106 ASILFA-----------------YGPKLAASIFSHNPLSYHLRMHRNLECDM-------------QLGIGVIFDSNKIAS 155 (429)
Q Consensus 106 anvL~i-----------------~~~~~~a~d~~~fL~~F~~~fPe~~~~~~-------------~l~a~~I~~~n~~~~ 155 (429)
|||||| .+++++|+|++.||++||++||||+++|| +| |.+|++.|++..
T Consensus 2 aNvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~l-a~~I~~~n~~~~ 80 (319)
T PLN02213 2 ANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPAL-VQEISQGNYICC 80 (319)
T ss_pred ccEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHH-HHHHHhhccccc
Confidence 789999 24567889999999999999999999999 66 999998886532
Q ss_pred cCcceeeeeeeecCcccCcccccchhhHHhhhccCCChHHHHHHhhhccccccccCCChhhHHHHHHHHHHHcCCCCccc
Q 042060 156 QENHINLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKRECNFSIAHVDKVSENCSLALDGYFAVYKIIDMYS 235 (429)
Q Consensus 156 ~~~~inLkGi~IGNg~~dp~~~~~~~~~~~~~~gli~~~~~~~~~~~C~~~~~~~~~~~~~C~~~~~~~~~~~~~~n~Yd 235 (429)
.++||||||+|||||++|..|..++.+|+|.+|||++++++.+++.|......+.++...|.+++..+....+.+|+||
T Consensus 81 -~~~inLkGi~IGNg~t~~~~~~~~~~~~~~~~gli~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 159 (319)
T PLN02213 81 -EPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSNTQCLKLTEEYHKCTAKINIHH 159 (319)
T ss_pred -CCceeeeEEEeCCCCCCccccchhHhhHHHhcCCCCHHHHHHHHHhcCCCccCCCCCcHHHHHHHHHHHHHHhcCCHhh
Confidence 2679999999999999999999999999999999999999999999975433344457789998887776678899999
Q ss_pred CCCCCCCCCccccccccCcccccccCcccccccCCCCCCCCCCCCCCc---chhhhccChHHHHHhhCCCCCCCCCCcee
Q 042060 236 LYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFDGWRRKPAGYDPCAS---DYTEVYLNRPDVQKALHANVTNIPYPWTH 312 (429)
Q Consensus 236 i~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---~~~~~ylN~~~Vr~AL~v~~~~~~~~w~~ 312 (429)
++.+.|... +.. ...|.. ..+..|||+++||+||||+... ...|+.
T Consensus 160 ~~~~~~~~~----------------------------~~~--~~~c~~~~~~~~~~ylN~~~V~~aL~v~~~~-~~~w~~ 208 (319)
T PLN02213 160 ILTPDCDVT----------------------------NVT--SPDCYYYPYHLIECWANDESVREALHIEKGS-KGKWAR 208 (319)
T ss_pred cccCcccCc----------------------------cCC--CCCcccchhHHHHHHhCCHHHHHHhCcCCCC-CCCCcc
Confidence 997656321 111 134653 2468999999999999997521 258999
Q ss_pred cccccccccCCCCChHHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCC-e
Q 042060 313 CSDKISFWSDAPPSILPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDG-L 391 (429)
Q Consensus 313 cs~~v~~~~d~~~~~~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~-L 391 (429)
||..|. +.....+.++.+.++|.+++|||||+||.|++||++|+++|+++|+|++.++|++|+.+++++||+|+|++ |
T Consensus 209 c~~~v~-~~~d~~~~~~~~~~~l~~~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~l 287 (319)
T PLN02213 209 CNRTIP-YNHDIVSSIPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKM 287 (319)
T ss_pred CCcccc-cccccccchHHHHHHHhcCceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcc
Confidence 999986 33333345566556666799999999999999999999999999999999999999999999999999986 9
Q ss_pred EEEEEcCCCccCCCCChHHHHHHHHHHHcCCCC
Q 042060 392 MFVTVRGAGHQVPTFAPKQSLQLLRHFLANKKL 424 (429)
Q Consensus 392 tf~~V~gAGHmVP~dqP~~a~~m~~~fi~~~~l 424 (429)
||++|+||||||| +||++|++||++||.+++|
T Consensus 288 tf~~V~~AGHmV~-~qP~~al~m~~~fi~~~~~ 319 (319)
T PLN02213 288 TFATIKAGGHTAE-YRPNETFIMFQRWISGQPL 319 (319)
T ss_pred eEEEEcCCCCCCC-cCHHHHHHHHHHHHcCCCC
Confidence 9999999999998 6999999999999999864
No 7
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-53 Score=390.95 Aligned_cols=354 Identities=19% Similarity=0.231 Sum_probs=275.4
Q ss_pred eeeeeEeecCCCCeeEEEEEEecCCC-CCCCCeEEEecCCCC-----------CCCccccCCCCccccCCcccccc-ceE
Q 042060 42 QYAGYVTVNESHGRALFYWFFEASSK-PEEKPLLLWLNGVFL-----------DKPYTNRHIPIIPHLIYCTFWLC-ASI 108 (429)
Q Consensus 42 ~ysGyl~v~~~~~~~lfywf~es~~~-p~~~PlvlWlnGGPG-----------~GP~~~~~~~~l~~N~~~~SW~~-anv 108 (429)
.-+||++|+ .++|+|||++.+... ....||.|||+|||| +||...+ +.+|+. +|-| |+|
T Consensus 3 ~~wg~v~vr--~~a~~F~wly~~~~~~ks~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~----~~~r~~--TWlk~adl 74 (414)
T KOG1283|consen 3 EDWGYVDVR--TGAHMFWWLYYATANVKSERPLALWLQGGPGASSTGFGNFEELGPLDLD----GSPRDW--TWLKDADL 74 (414)
T ss_pred ccccceeee--cCceEEEEEeeeccccccCCCeeEEecCCCCCCCcCccchhhcCCcccC----CCcCCc--hhhhhccE
Confidence 348999998 579999999988755 478999999999999 8888876 789999 9999 999
Q ss_pred EEE------------------cCcHHHHHHHHhhhHHHHHhcccccCCcc-------------eeeHHHHHhcccccccC
Q 042060 109 LFA------------------YGPKLAASIFSHNPLSYHLRMHRNLECDM-------------QLGIGVIFDSNKIASQE 157 (429)
Q Consensus 109 L~i------------------~~~~~~a~d~~~fL~~F~~~fPe~~~~~~-------------~l~a~~I~~~n~~~~~~ 157 (429)
||| ++++++|.|+.+.|++||..||||+.+|| .+ |..+.+..++++
T Consensus 75 lfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~-al~l~~aIk~G~-- 151 (414)
T KOG1283|consen 75 LFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKF-ALELDDAIKRGE-- 151 (414)
T ss_pred EEecCCCcCceeeecCcccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhh-hhhHHHHHhcCc--
Confidence 999 57899999999999999999999999999 34 666666666654
Q ss_pred cceeeeeeeecCcccCcccccchhhHHhhhccCCChHHHHHHhh---hccccc--cccCCChhhHHHHHHHHHHHcCCCC
Q 042060 158 NHINLKGFAVGNALLDDETDQTGMIDYAWDHAVISDRLYHDIKR---ECNFSI--AHVDKVSENCSLALDGYFAVYKIID 232 (429)
Q Consensus 158 ~~inLkGi~IGNg~~dp~~~~~~~~~~~~~~gli~~~~~~~~~~---~C~~~~--~~~~~~~~~C~~~~~~~~~~~~~~n 232 (429)
.+.|+.|+++|+.||+|..-..+..+|++..+++|+.+.+...+ .|.... .....++..+..+-+.+...+.++|
T Consensus 152 i~~nf~~VaLGDSWISP~D~V~SWGP~L~~~S~LDD~GLds~ns~A~k~~~~v~~g~~~~AT~~Wg~~e~li~~~sn~Vd 231 (414)
T KOG1283|consen 152 IKLNFIGVALGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSGAEKGKGGVDGGKWGGATGGWGGGENLISRESNGVD 231 (414)
T ss_pred eeecceeEEccCcccChhHhhhcchHHHHhhhhhcccCccchhhhHHhhcccccCCccccccccccCcCcceeecccCcc
Confidence 78999999999999999999999999999999999998876654 343211 1111223223333334445567899
Q ss_pred cccCCCCCCCCCccccccccCcccccccCcccccccCCCCCCCCCCCCCCcchhhhccChHHHHHhhCCCCCCCCCCcee
Q 042060 233 MYSLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFDGWRRKPAGYDPCASDYTEVYLNRPDVQKALHANVTNIPYPWTH 312 (429)
Q Consensus 233 ~Ydi~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ylN~~~Vr~AL~v~~~~~~~~w~~ 312 (429)
.|||.++.-.++....+...-. ++.. ..+ -+.. ...+-..+.++.+||-| ||++|+|.+. ...|..
T Consensus 232 fYNil~~t~~d~~~~ss~~~~~-------~~~~-~rr-l~~~--~~~~~~~D~L~~lM~g~-vrkkLgIip~--~~~wGg 297 (414)
T KOG1283|consen 232 FYNILTKTLGDQYSLSSRAAMT-------PEEV-MRR-LLVR--FVGDEDRDKLSDLMNGP-VRKKLGIIPG--GVKWGG 297 (414)
T ss_pred eeeeeccCCCcchhhhhhhhcc-------hHHH-HHH-HHhc--cCcchhHHHHHHHhccc-ccccccccCC--CCcccC
Confidence 9999987433332110000000 0000 000 0000 00111124578999987 9999999764 468999
Q ss_pred cccccc--cccCCCCChHHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccc--cc---eeCCeeeEEE
Q 042060 313 CSDKIS--FWSDAPPSILPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWK--PW---YAEKQVGGWT 385 (429)
Q Consensus 313 cs~~v~--~~~d~~~~~~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~--~w---~~~~~~~G~~ 385 (429)
.+..|+ +..|.+.+++..+.+||++|++|.||||++|+||++.|+++|+.+|.|++...|+ +| +.+-..+||.
T Consensus 298 qsg~vFt~lq~dFMKPvi~~VdeLL~~Gv~V~VynG~lDlIc~T~G~~AWv~~l~w~~~p~f~~~~r~~~~~s~~l~gy~ 377 (414)
T KOG1283|consen 298 QSGDVFTKLQGDFMKPVISKVDELLNNGVNVTVYNGQLDLICATMGTEAWVEKLEWSAKPSFQVSPRVGITVSRVLEGYE 377 (414)
T ss_pred cCCchHHHhhhhhcccHHHHHHHHHhCCceEEEEecccchhhcccchhhhhhheecCCCCccccceeeeccceeecchhh
Confidence 999996 6678999999999999999999999999999999999999999999999998775 44 3455789999
Q ss_pred EEeCCeEEEEEcCCCccCCCCChHHHHHHHHHHHc
Q 042060 386 IEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRHFLA 420 (429)
Q Consensus 386 k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~fi~ 420 (429)
|+|.||+|.+|..||||||.|+|+.|.+|++.+..
T Consensus 378 ktyknl~f~wilraghmvp~Dnp~~a~hmlr~vtk 412 (414)
T KOG1283|consen 378 KTYKNLSFFWILRAGHMVPADNPAAASHMLRHVTK 412 (414)
T ss_pred hhhccceeEEeecccCcccCCCHHHHhhheeeccc
Confidence 99999999999999999999999999999987653
No 8
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=377.61 Aligned_cols=340 Identities=17% Similarity=0.237 Sum_probs=271.8
Q ss_pred CCCceeeeeEeecCCCCeeEEEEEEecCCCCCCCCeEEEecCCCC----------CCCccccCCCCccc--cCCcccccc
Q 042060 38 VKFKQYAGYVTVNESHGRALFYWFFEASSKPEEKPLLLWLNGVFL----------DKPYTNRHIPIIPH--LIYCTFWLC 105 (429)
Q Consensus 38 ~~~~~ysGyl~v~~~~~~~lfywf~es~~~p~~~PlvlWlnGGPG----------~GP~~~~~~~~l~~--N~~~~SW~~ 105 (429)
+++++|+||.+.. ..+|||+||++++|.++|+|+||||||| +||++|+.+.+... ||+ ||++
T Consensus 72 lpv~~~~g~~d~e----d~~ffy~fe~~ndp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~--SW~~ 145 (498)
T COG2939 72 LPVRDYTGYPDAE----DFFFFYTFESPNDPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPG--SWLD 145 (498)
T ss_pred cchhhccCCcccc----eeEEEEEecCCCCCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCcc--cccc
Confidence 5578888884442 2399999999999999999999999999 99999998745555 999 9999
Q ss_pred -ceEEEE-----------------cCcHHHHHHHHhhhHHHHHhcccccCC--cc-------------eeeHHHHHhccc
Q 042060 106 -ASILFA-----------------YGPKLAASIFSHNPLSYHLRMHRNLEC--DM-------------QLGIGVIFDSNK 152 (429)
Q Consensus 106 -anvL~i-----------------~~~~~~a~d~~~fL~~F~~~fPe~~~~--~~-------------~l~a~~I~~~n~ 152 (429)
+||||| .+-..+.+|++.|++.||+.||+|.+. ++ .| |.+|++++.
T Consensus 146 ~adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~-A~~L~~~~~ 224 (498)
T COG2939 146 FADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVF-AHELLEDNI 224 (498)
T ss_pred CCceEEEecCcccCcccccccccccchhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHH-HHHHHHhcc
Confidence 999999 234678899999999999999999877 76 66 999999863
Q ss_pred ccccCcceeeeeeeecCc-ccCcccccchhhHHhhhc----cCCChHHHHHHhhhccccc-----ccc-C-CChhhHHHH
Q 042060 153 IASQENHINLKGFAVGNA-LLDDETDQTGMIDYAWDH----AVISDRLYHDIKRECNFSI-----AHV-D-KVSENCSLA 220 (429)
Q Consensus 153 ~~~~~~~inLkGi~IGNg-~~dp~~~~~~~~~~~~~~----gli~~~~~~~~~~~C~~~~-----~~~-~-~~~~~C~~~ 220 (429)
... ..+||++++|||| +|+|..++..|..+++.. +.++.+.++++++.|.... ..| + .....|..+
T Consensus 225 ~~~--~~~nlssvligng~~t~Pl~~~~~y~~~a~~~~~~~~~l~~e~~~~~~~~~~~d~~~~l~~g~~~~~~~~~c~~~ 302 (498)
T COG2939 225 ALN--GNVNLSSVLIGNGLWTDPLTQYLTYEPIAAEKGPYDGVLSSEECTKAEKYCAGDYCLALMKGCYDSGSLQPCENA 302 (498)
T ss_pred ccC--CceEeeeeeecCCcccChhHHHHHhhhhHhhcCCCCCcCcHHHHHHHHHHhhhhhHhhhccCCCCchhhhHHHHH
Confidence 222 4699999999999 999999999999999865 4566778888888776422 122 1 234567766
Q ss_pred HHHHHHH------cCC---CCcccCCCCCCCCCccccccccCcccccccCcccccccCCCCCCCCCCCCCCcc--hhhhc
Q 042060 221 LDGYFAV------YKI---IDMYSLYTPDCVNSNFTIKRTRSLPIIRGIAPKLFSKFDGWRRKPAGYDPCASD--YTEVY 289 (429)
Q Consensus 221 ~~~~~~~------~~~---~n~Ydi~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~--~~~~y 289 (429)
...+... ..+ .|.||++.. |..... ...|+++ ....|
T Consensus 303 ~~~~~~~~~~~~~r~~~~~~n~y~~r~~-~~d~g~-------------------------------~~~~y~~~~~~ld~ 350 (498)
T COG2939 303 SAYLTGLMREYVGRAGGRLLNVYDIREE-CRDPGL-------------------------------GGSCYDTLSTSLDY 350 (498)
T ss_pred HHHHHhcchhhhccccccccccccchhh-cCCCCc-------------------------------ccccccceeecccc
Confidence 6555432 123 799999988 864310 1134443 44678
Q ss_pred cChHHHHHhhCCCCCCCCCCceecccccc-cc----cCCCCChHHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHc
Q 042060 290 LNRPDVQKALHANVTNIPYPWTHCSDKIS-FW----SDAPPSILPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKL 364 (429)
Q Consensus 290 lN~~~Vr~AL~v~~~~~~~~w~~cs~~v~-~~----~d~~~~~~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L 364 (429)
++.+.++++++... ..|..|+..+. .| .+-.......+..++.+++.+++|.||.|.+||+.|++.|..+|
T Consensus 351 ~~~~~~~~~~~~~~----d~~~~c~t~a~~~f~~~~~~~~~~~~~~~~~~lv~~~~~~~~~gd~d~icn~~~~~a~~~~L 426 (498)
T COG2939 351 FNFDPEQEVNDPEV----DNISGCTTDAMTDFLTFTGGWAKPSRYLVLNLLVNNVWILLYAGDKDFICNLRGNMALDPKL 426 (498)
T ss_pred ccccchhccccccc----cchhccchHHHHhhhhhcCCcccccHHHHhhhhhcCCceeeeecCchhHhhhhhhcccCCcc
Confidence 88888999988764 37999999984 33 34556777788888899999999999999999999999999999
Q ss_pred CCCCccccc-----ccee--CCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHHHHcCC
Q 042060 365 GLKTVEEWK-----PWYA--EKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRHFLANK 422 (429)
Q Consensus 365 ~w~~~~~~~-----~w~~--~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~fi~~~ 422 (429)
+|.+..+|. +|.. ..+..|-++++++++|+.++.||||||.|+|+.+++|++.|+.+.
T Consensus 427 kw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~aGHMvp~d~P~~~~~~~~~~~~~~ 491 (498)
T COG2939 427 KWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYEAGHMVPYDRPESSLEMVNLWINGY 491 (498)
T ss_pred eEeeecchhhhcCCCcccccchhhcccccccCCceEEEEecCcceeecCChHHHHHHHHHHHhhc
Confidence 999998874 3433 557777778888999999999999999999999999999999884
No 9
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=96.87 E-value=0.0043 Score=59.15 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=51.6
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
-.++||+..|..|.+++..-.+.+.+.+. +..++.|.+|||+++.++|+...+++.
T Consensus 222 i~~Pvlli~G~~D~~v~~~~~~~~~~~~~------------------------~~~~~~i~~agH~~~~e~p~~~~~~i~ 277 (282)
T TIGR03343 222 IKAKTLVTWGRDDRFVPLDHGLKLLWNMP------------------------DAQLHVFSRCGHWAQWEHADAFNRLVI 277 (282)
T ss_pred CCCCEEEEEccCCCcCCchhHHHHHHhCC------------------------CCEEEEeCCCCcCCcccCHHHHHHHHH
Confidence 36899999999999999766666666553 566789999999999999999999999
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
.|+.
T Consensus 278 ~fl~ 281 (282)
T TIGR03343 278 DFLR 281 (282)
T ss_pred HHhh
Confidence 9985
No 10
>PRK03204 haloalkane dehalogenase; Provisional
Probab=96.58 E-value=0.0051 Score=59.47 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=48.8
Q ss_pred CceEEEEecCCCCCCCchhHHH-HHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRY-TLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~-~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
.++|||..|+.|.+++...... +.+.+. +.++..|.+|||+++.++|++..+++.
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip------------------------~~~~~~i~~aGH~~~~e~Pe~~~~~i~ 282 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFP------------------------DHVLVELPNAKHFIQEDAPDRIAAAII 282 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcC------------------------CCeEEEcCCCcccccccCHHHHHHHHH
Confidence 6999999999999887655433 334443 678899999999999999999999999
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
+|+.
T Consensus 283 ~~~~ 286 (286)
T PRK03204 283 ERFG 286 (286)
T ss_pred HhcC
Confidence 9973
No 11
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=96.48 E-value=0.01 Score=54.34 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=50.7
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
-.++||+.+|+.|.+++....+.+.+.+. +.+++.+.++||+++.++|++..+.++
T Consensus 192 ~~~Pvlii~g~~D~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~gH~~~~~~p~~~~~~i~ 247 (251)
T TIGR02427 192 IAVPTLCIAGDQDGSTPPELVREIADLVP------------------------GARFAEIRGAGHIPCVEQPEAFNAALR 247 (251)
T ss_pred cCCCeEEEEeccCCcCChHHHHHHHHhCC------------------------CceEEEECCCCCcccccChHHHHHHHH
Confidence 36899999999999999877666655543 346788999999999999999999999
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
.|+.
T Consensus 248 ~fl~ 251 (251)
T TIGR02427 248 DFLR 251 (251)
T ss_pred HHhC
Confidence 9973
No 12
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=96.44 E-value=0.0098 Score=54.41 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=49.1
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
-..+|||.+|..|.+++....+.+-+.+. +-++..+.++||+++.++|++..+.+.
T Consensus 187 i~~Pvlii~g~~D~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~gH~~~~e~p~~~~~~i~ 242 (245)
T TIGR01738 187 ISVPFLRLYGYLDGLVPAKVVPYLDKLAP------------------------HSELYIFAKAAHAPFLSHAEAFCALLV 242 (245)
T ss_pred CCCCEEEEeecCCcccCHHHHHHHHHhCC------------------------CCeEEEeCCCCCCccccCHHHHHHHHH
Confidence 36899999999999999877665544442 345678999999999999999999999
Q ss_pred HHH
Q 042060 417 HFL 419 (429)
Q Consensus 417 ~fi 419 (429)
.||
T Consensus 243 ~fi 245 (245)
T TIGR01738 243 AFK 245 (245)
T ss_pred hhC
Confidence 986
No 13
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=96.40 E-value=0.0087 Score=56.59 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=50.6
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.+++||..|+.|.+++....+.+.+.+. +..++.+.++||+++.++|++..+.+.+
T Consensus 220 ~~P~lii~g~~D~~vp~~~~~~~~~~~~------------------------~~~~~~~~~~gH~~~~e~p~~~~~~i~~ 275 (278)
T TIGR03056 220 TIPLHLIAGEEDKAVPPDESKRAATRVP------------------------TATLHVVPGGGHLVHEEQADGVVGLILQ 275 (278)
T ss_pred CCCEEEEEeCCCcccCHHHHHHHHHhcc------------------------CCeEEEECCCCCcccccCHHHHHHHHHH
Confidence 6899999999999999887777766643 3356788999999999999999999999
Q ss_pred HHc
Q 042060 418 FLA 420 (429)
Q Consensus 418 fi~ 420 (429)
|+.
T Consensus 276 f~~ 278 (278)
T TIGR03056 276 AAE 278 (278)
T ss_pred HhC
Confidence 984
No 14
>PRK10673 acyl-CoA esterase; Provisional
Probab=96.32 E-value=0.011 Score=55.32 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=50.7
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
..+||+..|+.|..++....+.+.+.+. +.+++.+.++||+.+.++|+...+.+.+
T Consensus 195 ~~P~l~i~G~~D~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~gH~~~~~~p~~~~~~l~~ 250 (255)
T PRK10673 195 PHPALFIRGGNSPYVTEAYRDDLLAQFP------------------------QARAHVIAGAGHWVHAEKPDAVLRAIRR 250 (255)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHhCC------------------------CcEEEEeCCCCCeeeccCHHHHHHHHHH
Confidence 5899999999999888666655555433 5678899999999999999999999999
Q ss_pred HHcC
Q 042060 418 FLAN 421 (429)
Q Consensus 418 fi~~ 421 (429)
|+..
T Consensus 251 fl~~ 254 (255)
T PRK10673 251 YLND 254 (255)
T ss_pred HHhc
Confidence 9965
No 15
>PRK10349 carboxylesterase BioH; Provisional
Probab=96.28 E-value=0.014 Score=55.03 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=49.8
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
-.++|||..|..|.++|....+...+.+. +-.++.+.++||+++.++|+...+.+.
T Consensus 195 i~~P~lii~G~~D~~~~~~~~~~~~~~i~------------------------~~~~~~i~~~gH~~~~e~p~~f~~~l~ 250 (256)
T PRK10349 195 VSMPFLRLYGYLDGLVPRKVVPMLDKLWP------------------------HSESYIFAKAAHAPFISHPAEFCHLLV 250 (256)
T ss_pred cCCCeEEEecCCCccCCHHHHHHHHHhCC------------------------CCeEEEeCCCCCCccccCHHHHHHHHH
Confidence 37999999999999998776654444433 567799999999999999999999999
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
+|-.
T Consensus 251 ~~~~ 254 (256)
T PRK10349 251 ALKQ 254 (256)
T ss_pred HHhc
Confidence 8853
No 16
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=96.28 E-value=0.014 Score=54.12 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=50.6
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++|||.+|+.|.+|+....+.+.+.+. +..++.+.++||+.+.++|+...+.+.+
T Consensus 198 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~gH~~~~~~~~~~~~~i~~ 253 (257)
T TIGR03611 198 QHPVLLIANRDDMLVPYTQSLRLAAALP------------------------NAQLKLLPYGGHASNVTDPETFNRALLD 253 (257)
T ss_pred CccEEEEecCcCcccCHHHHHHHHHhcC------------------------CceEEEECCCCCCccccCHHHHHHHHHH
Confidence 6899999999999999887777666543 3456789999999999999999999999
Q ss_pred HHc
Q 042060 418 FLA 420 (429)
Q Consensus 418 fi~ 420 (429)
|+.
T Consensus 254 fl~ 256 (257)
T TIGR03611 254 FLK 256 (257)
T ss_pred Hhc
Confidence 985
No 17
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=96.20 E-value=0.014 Score=58.46 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=51.6
Q ss_pred CceEEEEecCCCCCCCchhH-HHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTAT-RYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt-~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
.++|||..|+.|.++|..+. ..+++.|. +...+..+++|.+|||+++.++|++..+.+.
T Consensus 292 ~~PtLii~G~~D~~~p~~~~~~~~~~~l~--------------------~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~ 351 (360)
T PLN02679 292 SLPILVLWGDQDPFTPLDGPVGKYFSSLP--------------------SQLPNVTLYVLEGVGHCPHDDRPDLVHEKLL 351 (360)
T ss_pred CCCEEEEEeCCCCCcCchhhHHHHHHhhh--------------------ccCCceEEEEcCCCCCCccccCHHHHHHHHH
Confidence 69999999999999988653 23444442 0113567889999999999999999999999
Q ss_pred HHHcCC
Q 042060 417 HFLANK 422 (429)
Q Consensus 417 ~fi~~~ 422 (429)
+|+...
T Consensus 352 ~FL~~~ 357 (360)
T PLN02679 352 PWLAQL 357 (360)
T ss_pred HHHHhc
Confidence 999653
No 18
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=95.96 E-value=0.016 Score=56.24 Aligned_cols=63 Identities=25% Similarity=0.253 Sum_probs=49.0
Q ss_pred hCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCe-EEEEEcCCCccCCCCChHHHHHH
Q 042060 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGL-MFVTVRGAGHQVPTFAPKQSLQL 414 (429)
Q Consensus 336 ~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~L-tf~~V~gAGHmVP~dqP~~a~~m 414 (429)
+-.++|+++.|+.|.+++...-....+++- .+| .-+.+.|+||.|.+++|++..++
T Consensus 256 ~i~iPv~fi~G~~D~v~~~p~~~~~~rk~v-----------------------p~l~~~vv~~~~gH~vqqe~p~~v~~~ 312 (322)
T KOG4178|consen 256 KITIPVLFIWGDLDPVLPYPIFGELYRKDV-----------------------PRLTERVVIEGIGHFVQQEKPQEVNQA 312 (322)
T ss_pred ccccceEEEEecCcccccchhHHHHHHHhh-----------------------ccccceEEecCCcccccccCHHHHHHH
Confidence 346899999999999999984333333321 122 34788999999999999999999
Q ss_pred HHHHHcC
Q 042060 415 LRHFLAN 421 (429)
Q Consensus 415 ~~~fi~~ 421 (429)
+..|++.
T Consensus 313 i~~f~~~ 319 (322)
T KOG4178|consen 313 ILGFINS 319 (322)
T ss_pred HHHHHHh
Confidence 9999863
No 19
>PRK07581 hypothetical protein; Validated
Probab=95.90 E-value=0.027 Score=55.64 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=51.8
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcC-CCccCCCCChHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRG-AGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~g-AGHmVP~dqP~~a~~m~~ 416 (429)
.+++||..|+.|.++|....+.+.+.+. +..++.|.+ |||+++..||.....+++
T Consensus 275 ~~PtLvI~G~~D~~~p~~~~~~l~~~ip------------------------~a~l~~i~~~~GH~~~~~~~~~~~~~~~ 330 (339)
T PRK07581 275 TAKTFVMPISTDLYFPPEDCEAEAALIP------------------------NAELRPIESIWGHLAGFGQNPADIAFID 330 (339)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCC------------------------CCeEEEeCCCCCccccccCcHHHHHHHH
Confidence 6899999999999999888877766654 456788998 999999999999999999
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
+|+.
T Consensus 331 ~~~~ 334 (339)
T PRK07581 331 AALK 334 (339)
T ss_pred HHHH
Confidence 9984
No 20
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=95.87 E-value=0.028 Score=52.84 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=48.3
Q ss_pred HHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHH
Q 042060 334 LIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQ 413 (429)
Q Consensus 334 LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~ 413 (429)
|.+-+++|||..|+.|.+ +....+.+.+.+. +-.++.+.++||+++.++|++..+
T Consensus 227 l~~i~~P~lii~G~~D~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~gH~~~~e~p~~~~~ 281 (288)
T TIGR01250 227 LSEIKVPTLLTVGEFDTM-TPEAAREMQELIA------------------------GSRLVVFPDGSHMTMIEDPEVYFK 281 (288)
T ss_pred hhccCCCEEEEecCCCcc-CHHHHHHHHHhcc------------------------CCeEEEeCCCCCCcccCCHHHHHH
Confidence 434479999999999985 4455555555443 235678899999999999999999
Q ss_pred HHHHHHc
Q 042060 414 LLRHFLA 420 (429)
Q Consensus 414 m~~~fi~ 420 (429)
.+.+|+.
T Consensus 282 ~i~~fl~ 288 (288)
T TIGR01250 282 LLSDFIR 288 (288)
T ss_pred HHHHHhC
Confidence 9999974
No 21
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=95.80 E-value=0.024 Score=54.65 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=50.0
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++|||..|..|.+++....+. +.++. .+..++.+.+|||+++.++|++..+.+.+
T Consensus 234 ~~P~lvi~G~~D~~~~~~~~~~-~~~~~-----------------------~~~~~~~i~~~gH~~~~e~p~~~~~~i~~ 289 (294)
T PLN02824 234 KCPVLIAWGEKDPWEPVELGRA-YANFD-----------------------AVEDFIVLPGVGHCPQDEAPELVNPLIES 289 (294)
T ss_pred CCCeEEEEecCCCCCChHHHHH-HHhcC-----------------------CccceEEeCCCCCChhhhCHHHHHHHHHH
Confidence 7899999999999999876655 44432 13567899999999999999999999999
Q ss_pred HHcC
Q 042060 418 FLAN 421 (429)
Q Consensus 418 fi~~ 421 (429)
|+..
T Consensus 290 fl~~ 293 (294)
T PLN02824 290 FVAR 293 (294)
T ss_pred HHhc
Confidence 9964
No 22
>PRK03592 haloalkane dehalogenase; Provisional
Probab=95.79 E-value=0.014 Score=56.44 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=52.4
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++|||.+|+.|.+++......++..+. .+-++..+.+|||+++.++|++..+.+..
T Consensus 228 ~~P~lii~G~~D~~~~~~~~~~~~~~~~-----------------------~~~~~~~i~~~gH~~~~e~p~~v~~~i~~ 284 (295)
T PRK03592 228 DVPKLLINAEPGAILTTGAIRDWCRSWP-----------------------NQLEITVFGAGLHFAQEDSPEEIGAAIAA 284 (295)
T ss_pred CCCeEEEeccCCcccCcHHHHHHHHHhh-----------------------hhcceeeccCcchhhhhcCHHHHHHHHHH
Confidence 7899999999999997666667765532 13456788999999999999999999999
Q ss_pred HHcCCCC
Q 042060 418 FLANKKL 424 (429)
Q Consensus 418 fi~~~~l 424 (429)
|+.....
T Consensus 285 fl~~~~~ 291 (295)
T PRK03592 285 WLRRLRL 291 (295)
T ss_pred HHHHhcc
Confidence 9976543
No 23
>PRK00870 haloalkane dehalogenase; Provisional
Probab=95.79 E-value=0.027 Score=54.64 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=51.1
Q ss_pred HHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHH
Q 042060 333 KLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSL 412 (429)
Q Consensus 333 ~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~ 412 (429)
.+.+-.++|||..|..|.+++... +.+.+.+. . ..+..++.+.++||+++.++|+...
T Consensus 234 ~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~--~-------------------~~~~~~~~i~~~gH~~~~e~p~~~~ 291 (302)
T PRK00870 234 VLERWDKPFLTAFSDSDPITGGGD-AILQKRIP--G-------------------AAGQPHPTIKGAGHFLQEDSGEELA 291 (302)
T ss_pred hhhcCCCceEEEecCCCCcccCch-HHHHhhcc--c-------------------ccccceeeecCCCccchhhChHHHH
Confidence 344558999999999999999754 43333332 0 0124467899999999999999999
Q ss_pred HHHHHHHcCC
Q 042060 413 QLLRHFLANK 422 (429)
Q Consensus 413 ~m~~~fi~~~ 422 (429)
..+..|+...
T Consensus 292 ~~l~~fl~~~ 301 (302)
T PRK00870 292 EAVLEFIRAT 301 (302)
T ss_pred HHHHHHHhcC
Confidence 9999999653
No 24
>PHA02857 monoglyceride lipase; Provisional
Probab=95.71 E-value=0.035 Score=52.89 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=51.0
Q ss_pred hCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChH---HHH
Q 042060 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPK---QSL 412 (429)
Q Consensus 336 ~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~---~a~ 412 (429)
+-.++|||..|+.|.+||....+.+.+.+. .+-++.++.+|||++..++|+ +++
T Consensus 207 ~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~gH~~~~e~~~~~~~~~ 263 (276)
T PHA02857 207 KIKTPILILQGTNNEISDVSGAYYFMQHAN-----------------------CNREIKIYEGAKHHLHKETDEVKKSVM 263 (276)
T ss_pred cCCCCEEEEecCCCCcCChHHHHHHHHHcc-----------------------CCceEEEeCCCcccccCCchhHHHHHH
Confidence 336899999999999999999998888764 134678899999999999884 455
Q ss_pred HHHHHHHcC
Q 042060 413 QLLRHFLAN 421 (429)
Q Consensus 413 ~m~~~fi~~ 421 (429)
+-+.+||.+
T Consensus 264 ~~~~~~l~~ 272 (276)
T PHA02857 264 KEIETWIFN 272 (276)
T ss_pred HHHHHHHHH
Confidence 666678765
No 25
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=95.65 E-value=0.016 Score=57.48 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=52.0
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcC-CCccCCCCChHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRG-AGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~g-AGHmVP~dqP~~a~~m~~ 416 (429)
.+++||..|+.|.+++....+...+.+. .+-.+++|.+ |||+++.++|++...++.
T Consensus 277 ~~PtLvi~G~~D~~~p~~~~~~~~~~i~-----------------------p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~ 333 (343)
T PRK08775 277 RVPTVVVAVEGDRLVPLADLVELAEGLG-----------------------PRGSLRVLRSPYGHDAFLKETDRIDAILT 333 (343)
T ss_pred CCCeEEEEeCCCEeeCHHHHHHHHHHcC-----------------------CCCeEEEEeCCccHHHHhcCHHHHHHHHH
Confidence 6899999999999999888877777663 1345688874 999999999999999999
Q ss_pred HHHcC
Q 042060 417 HFLAN 421 (429)
Q Consensus 417 ~fi~~ 421 (429)
.|+..
T Consensus 334 ~FL~~ 338 (343)
T PRK08775 334 TALRS 338 (343)
T ss_pred HHHHh
Confidence 99964
No 26
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=95.64 E-value=0.03 Score=56.60 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=49.2
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++|||..|+.|.+++....+.+.+.. +..+++|.+|||+++.++|++....|.+
T Consensus 325 ~vPvLiI~G~~D~~v~~~~~~~~a~~~-------------------------~a~l~vIp~aGH~~~~E~Pe~v~~~I~~ 379 (383)
T PLN03084 325 KTPITVCWGLRDRWLNYDGVEDFCKSS-------------------------QHKLIELPMAGHHVQEDCGEELGGIISG 379 (383)
T ss_pred CCCEEEEeeCCCCCcCHHHHHHHHHhc-------------------------CCeEEEECCCCCCcchhCHHHHHHHHHH
Confidence 689999999999998887766655532 2456889999999999999999999999
Q ss_pred HHc
Q 042060 418 FLA 420 (429)
Q Consensus 418 fi~ 420 (429)
|+.
T Consensus 380 Fl~ 382 (383)
T PLN03084 380 ILS 382 (383)
T ss_pred Hhh
Confidence 985
No 27
>PLN02965 Probable pheophorbidase
Probab=95.39 E-value=0.04 Score=51.97 Aligned_cols=60 Identities=8% Similarity=-0.004 Sum_probs=50.9
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
-.+++|+..|..|.+++....+...+.+. +-.++.+.+|||++...+|++..+++.
T Consensus 192 i~vP~lvi~g~~D~~~~~~~~~~~~~~~~------------------------~a~~~~i~~~GH~~~~e~p~~v~~~l~ 247 (255)
T PLN02965 192 EKVPRVYIKTAKDNLFDPVRQDVMVENWP------------------------PAQTYVLEDSDHSAFFSVPTTLFQYLL 247 (255)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHhCC------------------------cceEEEecCCCCchhhcCHHHHHHHHH
Confidence 37999999999999999876666655554 345688899999999999999999999
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
+|+.
T Consensus 248 ~~~~ 251 (255)
T PLN02965 248 QAVS 251 (255)
T ss_pred HHHH
Confidence 9975
No 28
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=95.34 E-value=0.038 Score=52.79 Aligned_cols=60 Identities=20% Similarity=0.291 Sum_probs=49.4
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++|||..|+.|-+++....+...+.+. +.+++.+. +|||++.++|++..+.+.+
T Consensus 207 ~~P~lii~G~~D~~v~~~~~~~l~~~~~------------------------~~~~~~i~-~gH~~~~e~p~~~~~~i~~ 261 (276)
T TIGR02240 207 QQPTLVLAGDDDPIIPLINMRLLAWRIP------------------------NAELHIID-DGHLFLITRAEAVAPIIMK 261 (276)
T ss_pred CCCEEEEEeCCCCcCCHHHHHHHHHhCC------------------------CCEEEEEc-CCCchhhccHHHHHHHHHH
Confidence 6899999999999999887766665543 34556665 5999999999999999999
Q ss_pred HHcCC
Q 042060 418 FLANK 422 (429)
Q Consensus 418 fi~~~ 422 (429)
|+.+.
T Consensus 262 fl~~~ 266 (276)
T TIGR02240 262 FLAEE 266 (276)
T ss_pred HHHHh
Confidence 99753
No 29
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.13 E-value=0.055 Score=53.49 Aligned_cols=60 Identities=30% Similarity=0.415 Sum_probs=53.2
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
+.+|||..|+.|.+++....+...+++. |..++.|.+|||.+..++|++.-..+..
T Consensus 264 ~~pvlii~G~~D~~~p~~~~~~~~~~~p------------------------n~~~~~I~~~gH~~h~e~Pe~~~~~i~~ 319 (326)
T KOG1454|consen 264 KCPVLIIWGDKDQIVPLELAEELKKKLP------------------------NAELVEIPGAGHLPHLERPEEVAALLRS 319 (326)
T ss_pred CCceEEEEcCcCCccCHHHHHHHHhhCC------------------------CceEEEeCCCCcccccCCHHHHHHHHHH
Confidence 4789999999999999996666666653 7899999999999999999999999999
Q ss_pred HHcC
Q 042060 418 FLAN 421 (429)
Q Consensus 418 fi~~ 421 (429)
|+.+
T Consensus 320 Fi~~ 323 (326)
T KOG1454|consen 320 FIAR 323 (326)
T ss_pred HHHH
Confidence 9865
No 30
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=95.03 E-value=0.11 Score=42.09 Aligned_cols=65 Identities=28% Similarity=0.360 Sum_probs=55.4
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
..+|||.+|..|-++|+.+.+...+.|. +=..+++.++||-+-...-.-+.+++.+
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~------------------------~s~lvt~~g~gHg~~~~~s~C~~~~v~~ 89 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLP------------------------GSRLVTVDGAGHGVYAGGSPCVDKAVDD 89 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCC------------------------CceEEEEeccCcceecCCChHHHHHHHH
Confidence 4899999999999999999999999987 2356999999999986555677889999
Q ss_pred HHcCCCCCC
Q 042060 418 FLANKKLPS 426 (429)
Q Consensus 418 fi~~~~l~~ 426 (429)
|+..-.+|.
T Consensus 90 yl~~G~lP~ 98 (103)
T PF08386_consen 90 YLLDGTLPA 98 (103)
T ss_pred HHHcCCCCC
Confidence 998877774
No 31
>PLN02578 hydrolase
Probab=94.91 E-value=0.092 Score=52.37 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=48.0
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++||+.+|+.|.+|+....+.+.+.+. +-.++.+ ++||+.+.++|++..+.+..
T Consensus 296 ~~PvLiI~G~~D~~v~~~~~~~l~~~~p------------------------~a~l~~i-~~GH~~~~e~p~~~~~~I~~ 350 (354)
T PLN02578 296 SCPLLLLWGDLDPWVGPAKAEKIKAFYP------------------------DTTLVNL-QAGHCPHDEVPEQVNKALLE 350 (354)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCC------------------------CCEEEEe-CCCCCccccCHHHHHHHHHH
Confidence 6899999999999988776665544432 3455667 79999999999999999999
Q ss_pred HHcC
Q 042060 418 FLAN 421 (429)
Q Consensus 418 fi~~ 421 (429)
|+.+
T Consensus 351 fl~~ 354 (354)
T PLN02578 351 WLSS 354 (354)
T ss_pred HHhC
Confidence 9853
No 32
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=94.76 E-value=0.11 Score=54.16 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=54.6
Q ss_pred HHHHHh-CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCC-CCh
Q 042060 331 IKKLIR-GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPT-FAP 408 (429)
Q Consensus 331 ~~~LL~-~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~-dqP 408 (429)
+..+++ -.+++||..|+.|.++|....+...+.+. +-.++.+.+|||+.+. ++|
T Consensus 410 l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP------------------------~a~l~vI~~aGH~~~v~e~p 465 (481)
T PLN03087 410 LDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVP------------------------RARVKVIDDKDHITIVVGRQ 465 (481)
T ss_pred HHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCC------------------------CCEEEEeCCCCCcchhhcCH
Confidence 344443 37899999999999999988877766664 3456899999999996 899
Q ss_pred HHHHHHHHHHHcC
Q 042060 409 KQSLQLLRHFLAN 421 (429)
Q Consensus 409 ~~a~~m~~~fi~~ 421 (429)
+...+.+..|...
T Consensus 466 ~~fa~~L~~F~~~ 478 (481)
T PLN03087 466 KEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999854
No 33
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=94.54 E-value=0.091 Score=53.51 Aligned_cols=60 Identities=12% Similarity=-0.048 Sum_probs=45.1
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++||+..|+.|.+++ ...+.+.+.+. ..-.++.|.+|||+++.++|+.-.+++.+
T Consensus 325 ~vP~liI~G~~D~i~~-~~~~~~~~~~~-----------------------~~~~~~~i~~aGH~~~~E~P~~f~~~l~~ 380 (402)
T PLN02894 325 KVPTTFIYGRHDWMNY-EGAVEARKRMK-----------------------VPCEIIRVPQGGHFVFLDNPSGFHSAVLY 380 (402)
T ss_pred CCCEEEEEeCCCCCCc-HHHHHHHHHcC-----------------------CCCcEEEeCCCCCeeeccCHHHHHHHHHH
Confidence 6899999999998876 44444444432 12346889999999999999998887777
Q ss_pred HHcC
Q 042060 418 FLAN 421 (429)
Q Consensus 418 fi~~ 421 (429)
|+.+
T Consensus 381 ~~~~ 384 (402)
T PLN02894 381 ACRK 384 (402)
T ss_pred HHHH
Confidence 7653
No 34
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=94.46 E-value=0.095 Score=52.09 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=52.1
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHH----HHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQ----SLQ 413 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~----a~~ 413 (429)
.+++||.+|+.|.+|+....+.+.+++.- .+-++..+.++||+...++|++ +++
T Consensus 279 ~~P~Lii~G~~D~vv~~~~~~~l~~~~~~----------------------~~~~l~~i~~~gH~l~~e~p~~~~~~v~~ 336 (349)
T PLN02385 279 SLPLLILHGEADKVTDPSVSKFLYEKASS----------------------SDKKLKLYEDAYHSILEGEPDEMIFQVLD 336 (349)
T ss_pred CCCEEEEEeCCCCccChHHHHHHHHHcCC----------------------CCceEEEeCCCeeecccCCChhhHHHHHH
Confidence 69999999999999998888887777641 1356788999999999999987 777
Q ss_pred HHHHHHcCC
Q 042060 414 LLRHFLANK 422 (429)
Q Consensus 414 m~~~fi~~~ 422 (429)
.+.+|+...
T Consensus 337 ~i~~wL~~~ 345 (349)
T PLN02385 337 DIISWLDSH 345 (349)
T ss_pred HHHHHHHHh
Confidence 788888654
No 35
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=94.28 E-value=0.098 Score=52.75 Aligned_cols=65 Identities=20% Similarity=0.207 Sum_probs=52.5
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEc-CCCccCCCCChHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVR-GAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~-gAGHmVP~dqP~~a~~m~~ 416 (429)
.+++||..|+.|.++|....+...+.+.= .. ...+++.|. ++||+.+.++|++..+.+.
T Consensus 309 ~~PtLvI~G~~D~~~p~~~~~~la~~i~~--a~------------------~~~~l~~i~~~~GH~~~le~p~~~~~~L~ 368 (379)
T PRK00175 309 KARFLVVSFTSDWLFPPARSREIVDALLA--AG------------------ADVSYAEIDSPYGHDAFLLDDPRYGRLVR 368 (379)
T ss_pred CCCEEEEEECCccccCHHHHHHHHHHHHh--cC------------------CCeEEEEeCCCCCchhHhcCHHHHHHHHH
Confidence 68999999999999998888776666640 00 124678886 9999999999999999999
Q ss_pred HHHcCC
Q 042060 417 HFLANK 422 (429)
Q Consensus 417 ~fi~~~ 422 (429)
+|+...
T Consensus 369 ~FL~~~ 374 (379)
T PRK00175 369 AFLERA 374 (379)
T ss_pred HHHHhh
Confidence 999753
No 36
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=94.27 E-value=0.16 Score=51.55 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=53.5
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcC-CCccCCCCChHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRG-AGHQVPTFAPKQSLQLL 415 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~g-AGHmVP~dqP~~a~~m~ 415 (429)
-..+|||..|+.|.++|..-.+...+.+.=. ..+.+++.|.+ +||+++.++|+.....+
T Consensus 322 I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~--------------------~~~a~l~~I~s~~GH~~~le~p~~~~~~I 381 (389)
T PRK06765 322 IEANVLMIPCKQDLLQPPRYNYKMVDILQKQ--------------------GKYAEVYEIESINGHMAGVFDIHLFEKKI 381 (389)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHhhhc--------------------CCCeEEEEECCCCCcchhhcCHHHHHHHH
Confidence 3789999999999999987777666665300 02567889985 99999999999999999
Q ss_pred HHHHcCC
Q 042060 416 RHFLANK 422 (429)
Q Consensus 416 ~~fi~~~ 422 (429)
.+|+..+
T Consensus 382 ~~FL~~~ 388 (389)
T PRK06765 382 YEFLNRK 388 (389)
T ss_pred HHHHccc
Confidence 9999753
No 37
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=94.11 E-value=0.09 Score=47.08 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=42.2
Q ss_pred hCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHH
Q 042060 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQ 413 (429)
Q Consensus 336 ~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~ 413 (429)
.-+.+|++..|+.|.+++..-.+.+.+.+. +..++++.++||+++.++|++..+
T Consensus 174 ~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~gH~~~~~~p~~~~~ 227 (228)
T PF12697_consen 174 RIKVPVLVIHGEDDPIVPPESAEELADKLP------------------------NAELVVIPGAGHFLFLEQPDEVAE 227 (228)
T ss_dssp GSSSEEEEEEETTSSSSHHHHHHHHHHHST------------------------TEEEEEETTSSSTHHHHSHHHHHH
T ss_pred ccCCCeEEeecCCCCCCCHHHHHHHHHHCC------------------------CCEEEEECCCCCccHHHCHHHHhc
Confidence 347999999999999999444444444443 457799999999999999987543
No 38
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=94.03 E-value=0.091 Score=52.29 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=50.5
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEc-CCCccCCCCChHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVR-GAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~-gAGHmVP~dqP~~a~~m~~ 416 (429)
.+++||..|+.|.++|....+...+.+. ..+ -..+|+.|. +|||+++.++|++..+.+.
T Consensus 288 ~~P~Lvi~G~~D~~~p~~~~~~~a~~i~--~~~------------------~~v~~~~i~~~~GH~~~le~p~~~~~~l~ 347 (351)
T TIGR01392 288 KAPFLVVSITSDWLFPPAESRELAKALP--AAG------------------LRVTYVEIESPYGHDAFLVETDQVEELIR 347 (351)
T ss_pred CCCEEEEEeCCccccCHHHHHHHHHHHh--hcC------------------CceEEEEeCCCCCcchhhcCHHHHHHHHH
Confidence 6899999999999999988887777664 000 013556675 8999999999999999999
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
+|++
T Consensus 348 ~FL~ 351 (351)
T TIGR01392 348 GFLR 351 (351)
T ss_pred HHhC
Confidence 9974
No 39
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=93.74 E-value=0.16 Score=49.86 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=50.8
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHH----HHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQ----SLQ 413 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~----a~~ 413 (429)
.++|||.+|+.|.+|+....+.+.+.+.. .+-+++.+.++||++..++|+. ..+
T Consensus 251 ~~PvLii~G~~D~ivp~~~~~~l~~~i~~----------------------~~~~l~~~~~a~H~~~~e~pd~~~~~~~~ 308 (330)
T PLN02298 251 SIPFIVLHGSADVVTDPDVSRALYEEAKS----------------------EDKTIKIYDGMMHSLLFGEPDENIEIVRR 308 (330)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHhcc----------------------CCceEEEcCCcEeeeecCCCHHHHHHHHH
Confidence 69999999999999999999888887752 2356678899999999999864 556
Q ss_pred HHHHHHcCC
Q 042060 414 LLRHFLANK 422 (429)
Q Consensus 414 m~~~fi~~~ 422 (429)
.+.+||...
T Consensus 309 ~i~~fl~~~ 317 (330)
T PLN02298 309 DILSWLNER 317 (330)
T ss_pred HHHHHHHHh
Confidence 666777653
No 40
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=93.02 E-value=0.27 Score=44.66 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=43.6
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
-..++||.+|..|..++-. .+.+.+.+ .+.+++++.++||+++.++|++....+.
T Consensus 193 ~~~P~l~i~g~~D~~~~~~-~~~~~~~~------------------------~~~~~~~~~~~gH~~~~e~~~~~~~~i~ 247 (251)
T TIGR03695 193 LTIPVLYLCGEKDEKFVQI-AKEMQKLL------------------------PNLTLVIIANAGHNIHLENPEAFAKILL 247 (251)
T ss_pred CCCceEEEeeCcchHHHHH-HHHHHhcC------------------------CCCcEEEEcCCCCCcCccChHHHHHHHH
Confidence 4689999999999754311 11111111 2456788999999999999999999999
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
.|++
T Consensus 248 ~~l~ 251 (251)
T TIGR03695 248 AFLE 251 (251)
T ss_pred HHhC
Confidence 9984
No 41
>PRK06489 hypothetical protein; Provisional
Probab=93.00 E-value=0.34 Score=48.41 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=47.0
Q ss_pred CceEEEEecCCCCCCCchhH--HHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCC----CccCCCCChHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTAT--RYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGA----GHQVPTFAPKQS 411 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt--~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gA----GHmVP~dqP~~a 411 (429)
..+|||.+|+.|.++|.... +...+.+. +-.+++|.+| ||++. ++|++.
T Consensus 292 ~~PvLvI~G~~D~~~p~~~~~~~~la~~ip------------------------~a~l~~i~~a~~~~GH~~~-e~P~~~ 346 (360)
T PRK06489 292 KAPVLAINSADDERNPPETGVMEAALKRVK------------------------HGRLVLIPASPETRGHGTT-GSAKFW 346 (360)
T ss_pred CCCEEEEecCCCcccChhhHHHHHHHHhCc------------------------CCeEEEECCCCCCCCcccc-cCHHHH
Confidence 68999999999999987654 33333332 4567899996 99985 899999
Q ss_pred HHHHHHHHcC
Q 042060 412 LQLLRHFLAN 421 (429)
Q Consensus 412 ~~m~~~fi~~ 421 (429)
.+.+.+|+..
T Consensus 347 ~~~i~~FL~~ 356 (360)
T PRK06489 347 KAYLAEFLAQ 356 (360)
T ss_pred HHHHHHHHHh
Confidence 9999999964
No 42
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=92.80 E-value=0.32 Score=48.26 Aligned_cols=59 Identities=31% Similarity=0.398 Sum_probs=47.4
Q ss_pred hCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHH
Q 042060 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLL 415 (429)
Q Consensus 336 ~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~ 415 (429)
+-.++||+.+|+.|.+|+....+ .+ +.+.++..+.++||+...++|+...+.+
T Consensus 312 ~i~~Pvlii~g~~D~~vp~~~~~----~l-----------------------~~~~~~~~~~~~gH~~~~e~p~~~~~~i 364 (371)
T PRK14875 312 SLAIPVLVIWGEQDRIIPAAHAQ----GL-----------------------PDGVAVHVLPGAGHMPQMEAAADVNRLL 364 (371)
T ss_pred cCCCCEEEEEECCCCccCHHHHh----hc-----------------------cCCCeEEEeCCCCCChhhhCHHHHHHHH
Confidence 34789999999999999864322 11 1246778999999999999999999999
Q ss_pred HHHHcC
Q 042060 416 RHFLAN 421 (429)
Q Consensus 416 ~~fi~~ 421 (429)
..|+.+
T Consensus 365 ~~fl~~ 370 (371)
T PRK14875 365 AEFLGK 370 (371)
T ss_pred HHHhcc
Confidence 999864
No 43
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=92.69 E-value=0.31 Score=45.03 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=42.3
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++|||..|+.|.++. ....+ .+..++.|.++||+++.++|++..+.+..
T Consensus 188 ~~P~lii~G~~D~~~~-----~~~~~-------------------------~~~~~~~i~~~gH~~~~e~p~~~~~~i~~ 237 (242)
T PRK11126 188 TFPFYYLCGERDSKFQ-----ALAQQ-------------------------LALPLHVIPNAGHNAHRENPAAFAASLAQ 237 (242)
T ss_pred CCCeEEEEeCCcchHH-----HHHHH-------------------------hcCeEEEeCCCCCchhhhChHHHHHHHHH
Confidence 7899999999997441 11110 04677899999999999999999999999
Q ss_pred HHc
Q 042060 418 FLA 420 (429)
Q Consensus 418 fi~ 420 (429)
|+.
T Consensus 238 fl~ 240 (242)
T PRK11126 238 ILR 240 (242)
T ss_pred HHh
Confidence 985
No 44
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=92.35 E-value=0.45 Score=47.08 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=50.9
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCC-hHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFA-PKQSLQLLR 416 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dq-P~~a~~m~~ 416 (429)
.+++||.+|+.|.+++..+++.+.+++.- .+-++..+.+++|++..+. +++.++-+.
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~----------------------~~~~l~~~~g~~H~i~~E~~~~~v~~~i~ 327 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSI----------------------SNKELHTLEDMDHVITIEPGNEEVLKKII 327 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccC----------------------CCcEEEEECCCCCCCccCCCHHHHHHHHH
Confidence 68999999999999999999888777541 1345577899999999875 688888888
Q ss_pred HHHcC
Q 042060 417 HFLAN 421 (429)
Q Consensus 417 ~fi~~ 421 (429)
.||.+
T Consensus 328 ~wL~~ 332 (332)
T TIGR01607 328 EWISN 332 (332)
T ss_pred HHhhC
Confidence 89864
No 45
>PRK10749 lysophospholipase L2; Provisional
Probab=91.51 E-value=0.47 Score=46.72 Aligned_cols=68 Identities=9% Similarity=0.048 Sum_probs=50.5
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCCh---HHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAP---KQSLQ 413 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP---~~a~~ 413 (429)
-.++|||.+|+.|.+++..+++.+.+.+.=.+. ...+-.++.+.||||++..++| +.+++
T Consensus 258 i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~-----------------~~~~~~l~~~~gagH~~~~E~~~~r~~v~~ 320 (330)
T PRK10749 258 ITTPLLLLQAEEERVVDNRMHDRFCEARTAAGH-----------------PCEGGKPLVIKGAYHEILFEKDAMRSVALN 320 (330)
T ss_pred CCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCC-----------------CCCCceEEEeCCCcchhhhCCcHHHHHHHH
Confidence 368999999999999999999888877641110 0123467899999999999887 44555
Q ss_pred HHHHHHcC
Q 042060 414 LLRHFLAN 421 (429)
Q Consensus 414 m~~~fi~~ 421 (429)
-+..|+..
T Consensus 321 ~i~~fl~~ 328 (330)
T PRK10749 321 AIVDFFNR 328 (330)
T ss_pred HHHHHHhh
Confidence 56677754
No 46
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=91.38 E-value=0.54 Score=47.78 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=51.3
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCC-ChHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTF-APKQSLQLLR 416 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~d-qP~~a~~m~~ 416 (429)
.+++||.+|+.|.+++...++.+.+++.=. .=++..+.+++|++..+ .|+++++.+.
T Consensus 324 ~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~----------------------~k~l~~~~ga~H~l~~e~~~e~v~~~I~ 381 (395)
T PLN02652 324 TVPFMVLHGTADRVTDPLASQDLYNEAASR----------------------HKDIKLYDGFLHDLLFEPEREEVGRDII 381 (395)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhcCCC----------------------CceEEEECCCeEEeccCCCHHHHHHHHH
Confidence 699999999999999999999988876410 12345689999999776 7999999999
Q ss_pred HHHcC
Q 042060 417 HFLAN 421 (429)
Q Consensus 417 ~fi~~ 421 (429)
.|+.+
T Consensus 382 ~FL~~ 386 (395)
T PLN02652 382 DWMEK 386 (395)
T ss_pred HHHHH
Confidence 99975
No 47
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=91.04 E-value=0.44 Score=43.18 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=48.8
Q ss_pred hCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHH
Q 042060 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLL 415 (429)
Q Consensus 336 ~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~ 415 (429)
+-.+++|+.+|..|.++|....+...+.+. +-.++.+.++||.+..+.|++..+++
T Consensus 173 ~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~------------------------~~~~~~~~~~GH~~~~~~~~~~~~~i 228 (230)
T PF00561_consen 173 NIKVPTLIIWGEDDPLVPPESSEQLAKLIP------------------------NSQLVLIEGSGHFAFLEGPDEFNEII 228 (230)
T ss_dssp TTTSEEEEEEETTCSSSHHHHHHHHHHHST------------------------TEEEEEETTCCSTHHHHSHHHHHHHH
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcC------------------------CCEEEECCCCChHHHhcCHHhhhhhh
Confidence 357999999999999999988888555554 57779999999999999999988877
Q ss_pred H
Q 042060 416 R 416 (429)
Q Consensus 416 ~ 416 (429)
.
T Consensus 229 ~ 229 (230)
T PF00561_consen 229 I 229 (230)
T ss_dssp H
T ss_pred c
Confidence 5
No 48
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=90.80 E-value=0.56 Score=56.23 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=53.0
Q ss_pred hCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHH
Q 042060 336 RGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLL 415 (429)
Q Consensus 336 ~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~ 415 (429)
+-..++||..|+.|.+++ .-.++..+.+. ..-+ . .+- .......++.|.+|||+++.++|++..+.+
T Consensus 1566 ~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~--~a~~---~---~~~----~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I 1632 (1655)
T PLN02980 1566 QCDTPLLLVVGEKDVKFK-QIAQKMYREIG--KSKE---S---GND----KGKEIIEIVEIPNCGHAVHLENPLPVIRAL 1632 (1655)
T ss_pred hCCCCEEEEEECCCCccH-HHHHHHHHHcc--cccc---c---ccc----ccccceEEEEECCCCCchHHHCHHHHHHHH
Confidence 336899999999999875 23333334442 0000 0 000 001235789999999999999999999999
Q ss_pred HHHHcCCCCCCC
Q 042060 416 RHFLANKKLPSK 427 (429)
Q Consensus 416 ~~fi~~~~l~~~ 427 (429)
.+|+.+..-.+.
T Consensus 1633 ~~FL~~~~~~~~ 1644 (1655)
T PLN02980 1633 RKFLTRLHNSST 1644 (1655)
T ss_pred HHHHHhccccCC
Confidence 999998665443
No 49
>PLN02511 hydrolase
Probab=87.48 E-value=0.67 Score=46.93 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=43.3
Q ss_pred CceEEEEecCCCCCCCchhHH-HHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHH------
Q 042060 338 GLRVWVYSGDTDGRIPVTATR-YTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQ------ 410 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~-~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~------ 410 (429)
.+++||.+|+.|.+++..... ..++.+ .+..++.+.++||+.+.++|..
T Consensus 298 ~vPtLiI~g~dDpi~p~~~~~~~~~~~~------------------------p~~~l~~~~~gGH~~~~E~p~~~~~~~w 353 (388)
T PLN02511 298 RVPLLCIQAANDPIAPARGIPREDIKAN------------------------PNCLLIVTPSGGHLGWVAGPEAPFGAPW 353 (388)
T ss_pred CCCeEEEEcCCCCcCCcccCcHhHHhcC------------------------CCEEEEECCCcceeccccCCCCCCCCcc
Confidence 689999999999999865432 122211 3678899999999999999854
Q ss_pred HHHHHHHHHc
Q 042060 411 SLQLLRHFLA 420 (429)
Q Consensus 411 a~~m~~~fi~ 420 (429)
+.+.+.+|+.
T Consensus 354 ~~~~i~~Fl~ 363 (388)
T PLN02511 354 TDPVVMEFLE 363 (388)
T ss_pred HHHHHHHHHH
Confidence 3566666664
No 50
>PRK05855 short chain dehydrogenase; Validated
Probab=87.46 E-value=0.69 Score=48.92 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=44.7
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.+++||.+|+.|.+++....+.+.+.+ .+..++.+ ++||+++.+.|++..+.+..
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~------------------------~~~~~~~~-~~gH~~~~e~p~~~~~~i~~ 287 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWV------------------------PRLWRREI-KAGHWLPMSHPQVLAAAVAE 287 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccC------------------------CcceEEEc-cCCCcchhhChhHHHHHHHH
Confidence 589999999999999965554332211 12344555 57999999999999999999
Q ss_pred HHcC
Q 042060 418 FLAN 421 (429)
Q Consensus 418 fi~~ 421 (429)
|+..
T Consensus 288 fl~~ 291 (582)
T PRK05855 288 FVDA 291 (582)
T ss_pred HHHh
Confidence 9975
No 51
>PRK11460 putative hydrolase; Provisional
Probab=86.62 E-value=1.2 Score=41.63 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=47.0
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
.+.+|++.+|..|.++|..-++...+.|.=. ....++..+.++||.+..+.-+.+.+.|.
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~--------------------g~~~~~~~~~~~gH~i~~~~~~~~~~~l~ 206 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISL--------------------GGDVTLDIVEDLGHAIDPRLMQFALDRLR 206 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHC--------------------CCCeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999988888877510 02467788899999997655555555555
Q ss_pred HHH
Q 042060 417 HFL 419 (429)
Q Consensus 417 ~fi 419 (429)
+++
T Consensus 207 ~~l 209 (232)
T PRK11460 207 YTV 209 (232)
T ss_pred HHc
Confidence 544
No 52
>PRK10566 esterase; Provisional
Probab=86.55 E-value=1.2 Score=41.45 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=46.5
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
..++||.+|..|.+++...++.+.+.++=.+.. .+++++++.++||.+. | ..++-+.+
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~------------------~~~~~~~~~~~~H~~~---~-~~~~~~~~ 243 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLD------------------KNLTCLWEPGVRHRIT---P-EALDAGVA 243 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCC------------------cceEEEecCCCCCccC---H-HHHHHHHH
Confidence 478999999999999999998888877522111 2488899999999974 3 35566666
Q ss_pred HHcC
Q 042060 418 FLAN 421 (429)
Q Consensus 418 fi~~ 421 (429)
|+..
T Consensus 244 fl~~ 247 (249)
T PRK10566 244 FFRQ 247 (249)
T ss_pred HHHh
Confidence 7753
No 53
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=86.53 E-value=2.5 Score=41.60 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=49.6
Q ss_pred CChHHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCC
Q 042060 325 PSILPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVP 404 (429)
Q Consensus 325 ~~~~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP 404 (429)
.+++.-+..| ++.++|++..|+.|.+--..|.+ ....|.- ..-..+.|.+|||.|-
T Consensus 291 ~Pm~~r~~~l-~~~~pv~fiyG~~dWmD~~~g~~-~~~~~~~----------------------~~~~~~~v~~aGHhvy 346 (365)
T KOG4409|consen 291 RPMIQRLREL-KKDVPVTFIYGDRDWMDKNAGLE-VTKSLMK----------------------EYVEIIIVPGAGHHVY 346 (365)
T ss_pred hhHHHHHHhh-ccCCCEEEEecCcccccchhHHH-HHHHhhc----------------------ccceEEEecCCCceee
Confidence 4555555444 45799999999999876555544 3333310 1345689999999999
Q ss_pred CCChHHHHHHHHHHHc
Q 042060 405 TFAPKQSLQLLRHFLA 420 (429)
Q Consensus 405 ~dqP~~a~~m~~~fi~ 420 (429)
.|+|+.=-+++..++.
T Consensus 347 lDnp~~Fn~~v~~~~~ 362 (365)
T KOG4409|consen 347 LDNPEFFNQIVLEECD 362 (365)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999877666666553
No 54
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=85.99 E-value=2.2 Score=38.81 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=45.5
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCC-hHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFA-PKQSLQLL 415 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dq-P~~a~~m~ 415 (429)
...+|||.+|+.|.+||...++.+.+.|.-.+ ....++++.++||-....+ .....+.+
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g--------------------~~~~~~~~p~~gH~~~~~~~~~~~~~~~ 202 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAG--------------------KPVELLIFPGEGHGFGNPENRRDWYERI 202 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTT--------------------SSEEEEEETT-SSSTTSHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcC--------------------CCEEEEEcCcCCCCCCCchhHHHHHHHH
Confidence 47999999999999999999999999887211 2478899999999655432 22344444
Q ss_pred HHHH
Q 042060 416 RHFL 419 (429)
Q Consensus 416 ~~fi 419 (429)
.+|+
T Consensus 203 ~~f~ 206 (213)
T PF00326_consen 203 LDFF 206 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4454
No 55
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=85.20 E-value=2.8 Score=40.06 Aligned_cols=60 Identities=10% Similarity=-0.043 Sum_probs=48.9
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.+++++..|..|.++|..-.+.+++.+. +-.++++ .+||+.+..+|++..++|..
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~------------------------~~~~~~l-~~gH~p~ls~P~~~~~~i~~ 265 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWP------------------------PSQVYEL-ESDHSPFFSTPFLLFGLLIK 265 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCC------------------------ccEEEEE-CCCCCccccCHHHHHHHHHH
Confidence 5899999999999999987777776654 1245677 49999999999999999998
Q ss_pred HHcCC
Q 042060 418 FLANK 422 (429)
Q Consensus 418 fi~~~ 422 (429)
....-
T Consensus 266 ~a~~~ 270 (273)
T PLN02211 266 AAASV 270 (273)
T ss_pred HHHHh
Confidence 76543
No 56
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=84.65 E-value=3.4 Score=40.07 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=35.3
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCC
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVP 404 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP 404 (429)
.+++||.+|+.|.+||....+.+.+.+. +-.++++.++||+..
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~------------------------~~~~~~~~~~gH~~~ 290 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFP------------------------EAELKVTNNAGHSAF 290 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCC------------------------CCEEEEECCCCCCCC
Confidence 5899999999999999987777766654 355688999999974
No 57
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=84.23 E-value=2.4 Score=35.42 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=35.8
Q ss_pred HHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCcc
Q 042060 334 LIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQ 402 (429)
Q Consensus 334 LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHm 402 (429)
+-...++|++..|+.|.+++....+...+++. ..-.++.|.|+||+
T Consensus 100 ~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~-----------------------~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 100 LAKIRIPVLFIHGENDPLVPPEQVRRLYEALP-----------------------GPKELYIIPGAGHF 145 (145)
T ss_dssp HTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC-----------------------SSEEEEEETTS-TT
T ss_pred hhccCCcEEEEEECCCCcCCHHHHHHHHHHcC-----------------------CCcEEEEeCCCcCc
Confidence 44567899999999999999988888888877 13456889999996
No 58
>PLN02872 triacylglycerol lipase
Probab=83.83 E-value=2.9 Score=42.48 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=49.7
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCcc---CCCCChHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQ---VPTFAPKQSLQL 414 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHm---VP~dqP~~a~~m 414 (429)
.++|+||.|..|.+++....+++.+.|.= .-.+..+.++||+ ...+.|+..++-
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~-----------------------~~~l~~l~~~gH~dfi~~~eape~V~~~ 381 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELPS-----------------------KPELLYLENYGHIDFLLSTSAKEDVYNH 381 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCCC-----------------------ccEEEEcCCCCCHHHHhCcchHHHHHHH
Confidence 68999999999999999999988888760 0134667999996 345889999999
Q ss_pred HHHHHcC
Q 042060 415 LRHFLAN 421 (429)
Q Consensus 415 ~~~fi~~ 421 (429)
+..|+..
T Consensus 382 Il~fL~~ 388 (395)
T PLN02872 382 MIQFFRS 388 (395)
T ss_pred HHHHHHH
Confidence 9999874
No 59
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=83.24 E-value=2.7 Score=43.72 Aligned_cols=87 Identities=23% Similarity=0.283 Sum_probs=63.3
Q ss_pred HHHHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccC--CC
Q 042060 328 LPIIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQV--PT 405 (429)
Q Consensus 328 ~~~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmV--P~ 405 (429)
-|-|....++|=|+|+|+|..|.+++..+|..+-+++.=..... ..++..| +-|..|.|.||-- |-
T Consensus 343 ~pDLsaF~~~GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~------~~~v~dF------~RlF~vPGm~HC~gG~g 410 (474)
T PF07519_consen 343 DPDLSAFRARGGKLILYHGWADPLIPPQGTIDYYERVVARMGGA------LADVDDF------YRLFMVPGMGHCGGGPG 410 (474)
T ss_pred CcCHHHHHhcCCeEEEEecCCCCccCCCcHHHHHHHHHHhcccc------cccccce------eEEEecCCCcccCCCCC
Confidence 34566677889999999999999999999999988764110000 0012222 5568999999985 54
Q ss_pred CChHHHHHHHHHHHcCCCCCC
Q 042060 406 FAPKQSLQLLRHFLANKKLPS 426 (429)
Q Consensus 406 dqP~~a~~m~~~fi~~~~l~~ 426 (429)
..|-.++.-|.+|+.+..-|+
T Consensus 411 ~~~~d~l~aL~~WVE~G~AP~ 431 (474)
T PF07519_consen 411 PDPFDALTALVDWVENGKAPE 431 (474)
T ss_pred CCCCCHHHHHHHHHhCCCCCC
Confidence 567789999999998866553
No 60
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=82.97 E-value=2.9 Score=40.00 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=48.6
Q ss_pred HHHHHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccC-CCCCh
Q 042060 330 IIKKLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQV-PTFAP 408 (429)
Q Consensus 330 ~~~~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmV-P~dqP 408 (429)
..+.|.+-+.++|+..|+.|... ..+.+.+.-. ..|+.- -...+.+++++.+|||.+ ..+.+
T Consensus 199 ~~~~l~~~~~P~ll~~g~~D~~~-----~~~~~~~~~~--~~~~~~----------l~~~~v~~~~~~~~~H~l~~e~~~ 261 (274)
T TIGR03100 199 MKAGLERFQGPVLFILSGNDLTA-----QEFADSVLGE--PAWRGA----------LEDPGIERVEIDGADHTFSDRVWR 261 (274)
T ss_pred HHHHHHhcCCcEEEEEcCcchhH-----HHHHHHhccC--hhhHHH----------hhcCCeEEEecCCCCcccccHHHH
Confidence 33445455899999999999862 3343332210 111100 012468889999999999 56667
Q ss_pred HHHHHHHHHHHc
Q 042060 409 KQSLQLLRHFLA 420 (429)
Q Consensus 409 ~~a~~m~~~fi~ 420 (429)
++..+.+.+|+.
T Consensus 262 ~~v~~~i~~wL~ 273 (274)
T TIGR03100 262 EWVAARTTEWLR 273 (274)
T ss_pred HHHHHHHHHHHh
Confidence 999999999984
No 61
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=81.14 E-value=5.5 Score=35.60 Aligned_cols=63 Identities=27% Similarity=0.305 Sum_probs=45.6
Q ss_pred HHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHH
Q 042060 334 LIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQ 413 (429)
Q Consensus 334 LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~ 413 (429)
+.+...++|+..|+.|.+.+....+.+.+.+.. ...++++.++||+...++|+...+
T Consensus 217 ~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~gH~~~~~~p~~~~~ 273 (282)
T COG0596 217 LARITVPTLIIHGEDDPVVPAELARRLAAALPN-----------------------DARLVVIPGAGHFPHLEAPEAFAA 273 (282)
T ss_pred hccCCCCeEEEecCCCCcCCHHHHHHHHhhCCC-----------------------CceEEEeCCCCCcchhhcHHHHHH
Confidence 434579999999999965555544444444431 356788999999999999997766
Q ss_pred HHHHHH
Q 042060 414 LLRHFL 419 (429)
Q Consensus 414 m~~~fi 419 (429)
.+..|+
T Consensus 274 ~i~~~~ 279 (282)
T COG0596 274 ALLAFL 279 (282)
T ss_pred HHHHHH
Confidence 666644
No 62
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=80.09 E-value=5.7 Score=38.50 Aligned_cols=69 Identities=26% Similarity=0.336 Sum_probs=51.6
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCC--CCChHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVP--TFAPKQSLQLL 415 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP--~dqP~~a~~m~ 415 (429)
+.+|+||+|..|-++|+..++..++++-=.|. .+++|.++.+++|+.. ...|. ++.-|
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~-------------------a~V~~~~~~~~~H~~~~~~~~~~-a~~Wl 278 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWCAAGG-------------------ADVEYVRYPGGGHLGAAFASAPD-ALAWL 278 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHcCC-------------------CCEEEEecCCCChhhhhhcCcHH-HHHHH
Confidence 68999999999999999999999988641110 2588999999999964 45664 44555
Q ss_pred HHHHcCCCCCC
Q 042060 416 RHFLANKKLPS 426 (429)
Q Consensus 416 ~~fi~~~~l~~ 426 (429)
..-+.|++.++
T Consensus 279 ~~rf~G~~~~~ 289 (290)
T PF03583_consen 279 DDRFAGKPATS 289 (290)
T ss_pred HHHHCCCCCCC
Confidence 55566766543
No 63
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=78.82 E-value=4.5 Score=39.47 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=45.8
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
..-+||+..|-.+-.++..-......... +.-+..+.+|||+|..|+|+...+.+.
T Consensus 252 ~~~pvlfi~g~~S~fv~~~~~~~~~~~fp------------------------~~e~~~ld~aGHwVh~E~P~~~~~~i~ 307 (315)
T KOG2382|consen 252 YTGPVLFIKGLQSKFVPDEHYPRMEKIFP------------------------NVEVHELDEAGHWVHLEKPEEFIESIS 307 (315)
T ss_pred cccceeEEecCCCCCcChhHHHHHHHhcc------------------------chheeecccCCceeecCCHHHHHHHHH
Confidence 35788888888887777665544443332 344577788999999999999999999
Q ss_pred HHHcC
Q 042060 417 HFLAN 421 (429)
Q Consensus 417 ~fi~~ 421 (429)
.|+..
T Consensus 308 ~Fl~~ 312 (315)
T KOG2382|consen 308 EFLEE 312 (315)
T ss_pred HHhcc
Confidence 98753
No 64
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=76.20 E-value=4.6 Score=37.02 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=40.7
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
+.+|++.+|+.|.++|....+...+.|.=.+ .+++|.+..|.||-++ .+.+..+.+
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~--------------------~~v~~~~~~g~gH~i~----~~~~~~~~~ 210 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAG--------------------ANVEFHEYPGGGHEIS----PEELRDLRE 210 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT---------------------GEEEEEETT-SSS------HHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcC--------------------CCEEEEEcCCCCCCCC----HHHHHHHHH
Confidence 6899999999999999988877777664100 2588899999999997 355666677
Q ss_pred HHc
Q 042060 418 FLA 420 (429)
Q Consensus 418 fi~ 420 (429)
||.
T Consensus 211 ~l~ 213 (216)
T PF02230_consen 211 FLE 213 (216)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 65
>COG0400 Predicted esterase [General function prediction only]
Probab=74.94 E-value=4.5 Score=37.17 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=43.5
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
++.+|++-+|..|.+||..-+++..+.|.=.+ .+..+.++. .||.+|. +.++.++
T Consensus 145 ~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g--------------------~~v~~~~~~-~GH~i~~----e~~~~~~ 199 (207)
T COG0400 145 AGTPILLSHGTEDPVVPLALAEALAEYLTASG--------------------ADVEVRWHE-GGHEIPP----EELEAAR 199 (207)
T ss_pred CCCeEEEeccCcCCccCHHHHHHHHHHHHHcC--------------------CCEEEEEec-CCCcCCH----HHHHHHH
Confidence 48999999999999999999988887765111 134445555 9999986 4445555
Q ss_pred HHHcC
Q 042060 417 HFLAN 421 (429)
Q Consensus 417 ~fi~~ 421 (429)
+|+.+
T Consensus 200 ~wl~~ 204 (207)
T COG0400 200 SWLAN 204 (207)
T ss_pred HHHHh
Confidence 56654
No 66
>PRK10985 putative hydrolase; Provisional
Probab=73.49 E-value=11 Score=36.92 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=34.8
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCC
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFA 407 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dq 407 (429)
.+++||.+|+.|.+++....+.. .++. .++.++.+.++||+.+.+.
T Consensus 255 ~~P~lii~g~~D~~~~~~~~~~~-~~~~-----------------------~~~~~~~~~~~GH~~~~~g 300 (324)
T PRK10985 255 RKPTLIIHAKDDPFMTHEVIPKP-ESLP-----------------------PNVEYQLTEHGGHVGFVGG 300 (324)
T ss_pred CCCEEEEecCCCCCCChhhChHH-HHhC-----------------------CCeEEEECCCCCceeeCCC
Confidence 68999999999999986555443 2221 2677899999999988753
No 67
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=73.48 E-value=7 Score=38.73 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=45.3
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCCh---HHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAP---KQSLQL 414 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP---~~a~~m 414 (429)
..+||+..|..|.+++....+.+.+.+.= ...+++++ .+||+.+.+.| ++...-
T Consensus 286 ~~Pvliv~G~~D~i~~~~~~~~~~~~~~~----------------------~~~~~~~~-~~gH~~~~~~~~~~~~v~~~ 342 (350)
T TIGR01836 286 KMPILNIYAERDHLVPPDASKALNDLVSS----------------------EDYTELSF-PGGHIGIYVSGKAQKEVPPA 342 (350)
T ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHcCC----------------------CCeEEEEc-CCCCEEEEECchhHhhhhHH
Confidence 68999999999999999998888887651 12344444 58999988765 566667
Q ss_pred HHHHHc
Q 042060 415 LRHFLA 420 (429)
Q Consensus 415 ~~~fi~ 420 (429)
+..|+.
T Consensus 343 i~~wl~ 348 (350)
T TIGR01836 343 IGKWLQ 348 (350)
T ss_pred HHHHHH
Confidence 777775
No 68
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=72.79 E-value=3.7 Score=41.16 Aligned_cols=26 Identities=35% Similarity=0.750 Sum_probs=21.3
Q ss_pred eEEEEEEec--CCCCCCCCeEEEecCCCC
Q 042060 56 ALFYWFFEA--SSKPEEKPLLLWLNGVFL 82 (429)
Q Consensus 56 ~lfywf~es--~~~p~~~PlvlWlnGGPG 82 (429)
.-.||++++ +.+|++||+||++.|| |
T Consensus 105 ~~s~Wlvk~P~~~~pk~DpVlIYlHGG-G 132 (374)
T PF10340_consen 105 SQSYWLVKAPNRFKPKSDPVLIYLHGG-G 132 (374)
T ss_pred cceEEEEeCCcccCCCCCcEEEEEcCC-e
Confidence 346999996 3468899999999999 6
No 69
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=72.28 E-value=21 Score=35.39 Aligned_cols=122 Identities=10% Similarity=0.044 Sum_probs=66.0
Q ss_pred eeeEeecCCCCeeEEEEEEecCCCC--CCCCeEEEecCCCC--CCCccccCCCCccccCCcccccc-ceEEEE-------
Q 042060 44 AGYVTVNESHGRALFYWFFEASSKP--EEKPLLLWLNGVFL--DKPYTNRHIPIIPHLIYCTFWLC-ASILFA------- 111 (429)
Q Consensus 44 sGyl~v~~~~~~~lfywf~es~~~p--~~~PlvlWlnGGPG--~GP~~~~~~~~l~~N~~~~SW~~-anvL~i------- 111 (429)
+.=++++ ....++-+.|.....+ ..+|++||+.|| | +|.-... .++..||.-.+ +|.+-|
T Consensus 63 ~~dv~~~--~~~~l~vRly~P~~~~~~~~~p~lvyfHGG-Gf~~~S~~~~-----~y~~~~~~~a~~~~~vvvSVdYRLA 134 (336)
T KOG1515|consen 63 SKDVTID--PFTNLPVRLYRPTSSSSETKLPVLVYFHGG-GFCLGSANSP-----AYDSFCTRLAAELNCVVVSVDYRLA 134 (336)
T ss_pred eeeeEec--CCCCeEEEEEcCCCCCcccCceEEEEEeCC-ccEeCCCCCc-----hhHHHHHHHHHHcCeEEEecCcccC
Confidence 3444443 4567999999887653 589999999999 6 6542221 23333444446 788887
Q ss_pred ------cCcHHHHHHHHhhhHH-HHHhcccccCCcc--------eeeHHHHHhcccccccCcceeeeeeeecCcccCccc
Q 042060 112 ------YGPKLAASIFSHNPLS-YHLRMHRNLECDM--------QLGIGVIFDSNKIASQENHINLKGFAVGNALLDDET 176 (429)
Q Consensus 112 ------~~~~~~a~d~~~fL~~-F~~~fPe~~~~~~--------~l~a~~I~~~n~~~~~~~~inLkGi~IGNg~~dp~~ 176 (429)
..-++.=..+..++++ |....=..+. =| -| |+.|-.+..+.. ...+.|+|+++--|++....
T Consensus 135 PEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~r-v~l~GDSaGGNi-a~~va~r~~~~~-~~~~ki~g~ili~P~~~~~~ 211 (336)
T KOG1515|consen 135 PEHPFPAAYDDGWAALKWVLKNSWLKLGADPSR-VFLAGDSAGGNI-AHVVAQRAADEK-LSKPKIKGQILIYPFFQGTD 211 (336)
T ss_pred CCCCCCccchHHHHHHHHHHHhHHHHhCCCccc-EEEEccCccHHH-HHHHHHHHhhcc-CCCcceEEEEEEecccCCCC
Confidence 1112222223333333 5544333322 22 23 444433222110 13588999999777776544
No 70
>PRK13604 luxD acyl transferase; Provisional
Probab=67.18 E-value=13 Score=36.41 Aligned_cols=46 Identities=9% Similarity=0.211 Sum_probs=39.6
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCC
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPT 405 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~ 405 (429)
..+||+.+|+.|-+|+..+++...+++.= .+-.++.+.||+|....
T Consensus 202 ~~PvLiIHG~~D~lVp~~~s~~l~e~~~s----------------------~~kkl~~i~Ga~H~l~~ 247 (307)
T PRK13604 202 DIPFIAFTANNDSWVKQSEVIDLLDSIRS----------------------EQCKLYSLIGSSHDLGE 247 (307)
T ss_pred CCCEEEEEcCCCCccCHHHHHHHHHHhcc----------------------CCcEEEEeCCCccccCc
Confidence 58999999999999999999999988651 35677999999999765
No 71
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=66.74 E-value=8.5 Score=40.70 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=37.9
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPK 409 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~ 409 (429)
.+++|+..|..|-++|+..++...+.+. +-....+.++||++...+|.
T Consensus 415 ~vPvLvV~G~~D~IvP~~sa~~l~~~i~------------------------~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 415 KVPVYIIATREDHIAPWQSAYRGAALLG------------------------GPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred CCCEEEEeeCCCCcCCHHHHHHHHHHCC------------------------CCEEEEECCCCCchHhhCCC
Confidence 5899999999999999999987776654 12234678999998777664
No 72
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=66.50 E-value=10 Score=35.82 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=45.3
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
..+|||++|..|-++|+.-..+...... +..-..+|+||||--..--| +-++.+++
T Consensus 192 ~~PVLiiHgtdDevv~~sHg~~Lye~~k-----------------------~~~epl~v~g~gH~~~~~~~-~yi~~l~~ 247 (258)
T KOG1552|consen 192 TCPVLIIHGTDDEVVDFSHGKALYERCK-----------------------EKVEPLWVKGAGHNDIELYP-EYIEHLRR 247 (258)
T ss_pred cCCEEEEecccCceecccccHHHHHhcc-----------------------ccCCCcEEecCCCcccccCH-HHHHHHHH
Confidence 4699999999999999988777666544 12344789999999887666 55666777
Q ss_pred HHcC
Q 042060 418 FLAN 421 (429)
Q Consensus 418 fi~~ 421 (429)
|+..
T Consensus 248 f~~~ 251 (258)
T KOG1552|consen 248 FISS 251 (258)
T ss_pred HHHH
Confidence 7754
No 73
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=66.18 E-value=12 Score=40.35 Aligned_cols=60 Identities=20% Similarity=0.403 Sum_probs=47.2
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.-++||.+|..|..|+..-++++.+.|+-.|. ..-++.+.+.||-++. |+...++++.
T Consensus 551 ~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~--------------------~~~~~~~p~e~H~~~~--~~~~~~~~~~ 608 (620)
T COG1506 551 KTPLLLIHGEEDDRVPIEQAEQLVDALKRKGK--------------------PVELVVFPDEGHGFSR--PENRVKVLKE 608 (620)
T ss_pred CCCEEEEeecCCccCChHHHHHHHHHHHHcCc--------------------eEEEEEeCCCCcCCCC--chhHHHHHHH
Confidence 57899999999999999999999999974332 3567899999999987 5555555544
Q ss_pred HH
Q 042060 418 FL 419 (429)
Q Consensus 418 fi 419 (429)
++
T Consensus 609 ~~ 610 (620)
T COG1506 609 IL 610 (620)
T ss_pred HH
Confidence 43
No 74
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=64.79 E-value=15 Score=35.62 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred hCCceEEEEecCCCCCCC-chhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCCh---HHH
Q 042060 336 RGGLRVWVYSGDTDGRIP-VTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAP---KQS 411 (429)
Q Consensus 336 ~~~irVLiY~Gd~D~i~n-~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP---~~a 411 (429)
...+.|||.+|..|.++. ..+..++.++++- .+-+++.+.||.|.+-.+.+ +++
T Consensus 226 ~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~----------------------~~~~~~~~~g~~He~~~E~~~~r~~~ 283 (298)
T COG2267 226 AIALPVLLLQGGDDRVVDNVEGLARFFERAGS----------------------PDKELKVIPGAYHELLNEPDRAREEV 283 (298)
T ss_pred cccCCEEEEecCCCccccCcHHHHHHHHhcCC----------------------CCceEEecCCcchhhhcCcchHHHHH
Confidence 457999999999999999 6888888888772 34667999999999987754 578
Q ss_pred HHHHHHHHcCC
Q 042060 412 LQLLRHFLANK 422 (429)
Q Consensus 412 ~~m~~~fi~~~ 422 (429)
++.+..|+...
T Consensus 284 ~~~~~~~l~~~ 294 (298)
T COG2267 284 LKDILAWLAEA 294 (298)
T ss_pred HHHHHHHHHhh
Confidence 88888888654
No 75
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=64.62 E-value=10 Score=34.88 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCceEEEEecCCCCCCCchh-HHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccC-CCCChH
Q 042060 337 GGLRVWVYSGDTDGRIPVTA-TRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQV-PTFAPK 409 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~G-t~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmV-P~dqP~ 409 (429)
-+-.||+.+|..|.+-|..- .+..+++|+=.+.. .+++.+...+|||++ |-+.|.
T Consensus 114 i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~------------------~~~~~l~Y~~aGH~i~~Py~P~ 170 (213)
T PF08840_consen 114 IKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFP------------------HNVEHLSYPGAGHLIEPPYFPH 170 (213)
T ss_dssp --SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----------------------EEEEETTB-S---STT---
T ss_pred cCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCC------------------CcceEEEcCCCCceecCCCCCC
Confidence 37899999999999988765 44556677522221 147788889999996 333553
No 76
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=58.51 E-value=27 Score=35.68 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=44.3
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
.++|||.+|..|.++|....+.+.+... +-.++.+.++ |+. .+|..++..+..
T Consensus 355 ~~PvLiI~G~~D~ivP~~~a~~l~~~~~------------------------~~~l~~i~~~-~~~--e~~~~~~~~i~~ 407 (414)
T PRK05077 355 PTPMLSGYWKNDPFSPEEDSRLIASSSA------------------------DGKLLEIPFK-PVY--RNFDKALQEISD 407 (414)
T ss_pred CCcEEEEecCCCCCCCHHHHHHHHHhCC------------------------CCeEEEccCC-Ccc--CCHHHHHHHHHH
Confidence 5799999999999999999986655432 2345667776 333 599999999999
Q ss_pred HHcCC
Q 042060 418 FLANK 422 (429)
Q Consensus 418 fi~~~ 422 (429)
|+...
T Consensus 408 wL~~~ 412 (414)
T PRK05077 408 WLEDR 412 (414)
T ss_pred HHHHH
Confidence 98643
No 77
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=49.71 E-value=13 Score=25.10 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=25.0
Q ss_pred cccCcccccchhhHHhhhccCCChHHHHHHhh
Q 042060 170 ALLDDETDQTGMIDYAWDHAVISDRLYHDIKR 201 (429)
Q Consensus 170 g~~dp~~~~~~~~~~~~~~gli~~~~~~~~~~ 201 (429)
|.+||.+...-..+=|+..|+||++.+..+.+
T Consensus 12 Giidp~tg~~lsv~~A~~~glId~~~~~~L~e 43 (45)
T PF00681_consen 12 GIIDPETGERLSVEEAIQRGLIDSDTAQKLLE 43 (45)
T ss_dssp SEEETTTTEEEEHHHHHHTTSS-HHHHHHHHH
T ss_pred eEEeCCCCeEEcHHHHHHCCCcCHHHHHHHHc
Confidence 77888877665677799999999999887754
No 78
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=47.56 E-value=33 Score=30.33 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=34.1
Q ss_pred ceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCC
Q 042060 339 LRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPT 405 (429)
Q Consensus 339 irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~ 405 (429)
++.+++..+.|-.|++.-++.+.+.|+ -.++.+.++||+-..
T Consensus 115 ~~~~viaS~nDp~vp~~~a~~~A~~l~-------------------------a~~~~~~~~GHf~~~ 156 (171)
T PF06821_consen 115 FPSIVIASDNDPYVPFERAQRLAQRLG-------------------------AELIILGGGGHFNAA 156 (171)
T ss_dssp CCEEEEEETTBSSS-HHHHHHHHHHHT--------------------------EEEEETS-TTSSGG
T ss_pred CCeEEEEcCCCCccCHHHHHHHHHHcC-------------------------CCeEECCCCCCcccc
Confidence 555899999999999999999999986 567899999999765
No 79
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=39.52 E-value=18 Score=23.35 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=6.3
Q ss_pred CCeEEEecCCCC
Q 042060 71 KPLLLWLNGVFL 82 (429)
Q Consensus 71 ~PlvlWlnGGPG 82 (429)
.-=.||++|-||
T Consensus 24 ~gRTiWFqGdPG 35 (39)
T PF09292_consen 24 NGRTIWFQGDPG 35 (39)
T ss_dssp TS-EEEESS---
T ss_pred CCCEEEeeCCCC
Confidence 344799999998
No 80
>COG4099 Predicted peptidase [General function prediction only]
Probab=39.45 E-value=37 Score=33.00 Aligned_cols=29 Identities=34% Similarity=0.753 Sum_probs=21.7
Q ss_pred CCCeeEEEEEEecCC-CCCC--CCeEEEecCC
Q 042060 52 SHGRALFYWFFEASS-KPEE--KPLLLWLNGV 80 (429)
Q Consensus 52 ~~~~~lfywf~es~~-~p~~--~PlvlWlnGG 80 (429)
+.+..|-|-||..+. +|++ -||||||.|+
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHga 200 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGA 200 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecC
Confidence 467889999887743 3433 3999999987
No 81
>PRK11071 esterase YqiA; Provisional
Probab=39.18 E-value=75 Score=28.40 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=43.6
Q ss_pred CCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHH
Q 042060 337 GGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLR 416 (429)
Q Consensus 337 ~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~ 416 (429)
...+|+|.+|+.|-++|+.-+.+..++. ..+.+.||+|.- ...+..++.+.
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~~---------------------------~~~~~~ggdH~f--~~~~~~~~~i~ 185 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAAC---------------------------RQTVEEGGNHAF--VGFERYFNQIV 185 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHhc---------------------------ceEEECCCCcch--hhHHHhHHHHH
Confidence 4568899999999999999988777731 235779999997 33488888888
Q ss_pred HHHc
Q 042060 417 HFLA 420 (429)
Q Consensus 417 ~fi~ 420 (429)
.|+.
T Consensus 186 ~fl~ 189 (190)
T PRK11071 186 DFLG 189 (190)
T ss_pred HHhc
Confidence 8874
No 82
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=37.75 E-value=93 Score=28.84 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=46.8
Q ss_pred ceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChH---HHHHHH
Q 042060 339 LRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPK---QSLQLL 415 (429)
Q Consensus 339 irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~---~a~~m~ 415 (429)
..+|+.+|..|.+++..-.+.......= .+...+.+.+++|....+.+. +++.-+
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~----------------------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 290 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARE----------------------RPKKLLFVPGGGHIDLYDNPPAVEQALDKL 290 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhcc----------------------CCceEEEecCCccccccCccHHHHHHHHHH
Confidence 8999999999999998888877776541 146678888999999986655 566666
Q ss_pred HHHHcC
Q 042060 416 RHFLAN 421 (429)
Q Consensus 416 ~~fi~~ 421 (429)
.+|+..
T Consensus 291 ~~f~~~ 296 (299)
T COG1073 291 AEFLER 296 (299)
T ss_pred HHHHHH
Confidence 666643
No 83
>PF15253 STIL_N: SCL-interrupting locus protein N-terminus
Probab=36.05 E-value=42 Score=34.01 Aligned_cols=35 Identities=31% Similarity=0.769 Sum_probs=26.8
Q ss_pred eeeeeEeecCCCCeeEEEEEEecCCCCCCCCeE-EEecC
Q 042060 42 QYAGYVTVNESHGRALFYWFFEASSKPEEKPLL-LWLNG 79 (429)
Q Consensus 42 ~ysGyl~v~~~~~~~lfywf~es~~~p~~~Plv-lWlnG 79 (429)
.-+|||+.+ ..+++.. ..|+.....+-||| +||.|
T Consensus 200 ~k~GfLTmD--qtRkl~l-LlesDpk~~slPLVGiWlsG 235 (410)
T PF15253_consen 200 YKSGFLTMD--QTRKLLL-LLESDPKASSLPLVGIWLSG 235 (410)
T ss_pred cccceeeEc--cccceEE-EeccCCCccCCCceeeEecC
Confidence 569999998 4577877 77776666677887 88875
No 84
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=36.02 E-value=56 Score=35.32 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=65.2
Q ss_pred CCeeEEEEEEecCCC-CCC-CCeEEEecCCCC--CCCccccCCCCccccCCcccccc--ceEEEE-----cC--c-----
Q 042060 53 HGRALFYWFFEASSK-PEE-KPLLLWLNGVFL--DKPYTNRHIPIIPHLIYCTFWLC--ASILFA-----YG--P----- 114 (429)
Q Consensus 53 ~~~~lfywf~es~~~-p~~-~PlvlWlnGGPG--~GP~~~~~~~~l~~N~~~~SW~~--anvL~i-----~~--~----- 114 (429)
.|..+..|++...+. |.. -|+|+++.|||- .|+ . ...+.. .|.. ..||++ ++ .
T Consensus 374 dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~-~------~~~~~q--~~~~~G~~V~~~n~RGS~GyG~~F~~~ 444 (620)
T COG1506 374 DGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGY-S------FNPEIQ--VLASAGYAVLAPNYRGSTGYGREFADA 444 (620)
T ss_pred CCCEEEEEEecCCCCCCCCCCCEEEEeCCCCcccccc-c------cchhhH--HHhcCCeEEEEeCCCCCCccHHHHHHh
Confidence 577899999887653 333 499999999996 552 2 222333 3333 678877 11 0
Q ss_pred ------HHHHHHHHhhhHHHHHhcccccCCcc---------eeeHHHHHhcccccccCcceeeeeeeecCcccCcccc
Q 042060 115 ------KLAASIFSHNPLSYHLRMHRNLECDM---------QLGIGVIFDSNKIASQENHINLKGFAVGNALLDDETD 177 (429)
Q Consensus 115 ------~~~a~d~~~fL~~F~~~fPe~~~~~~---------~l~a~~I~~~n~~~~~~~~inLkGi~IGNg~~dp~~~ 177 (429)
....+|+..++. |+.+.|..-...+ ++ +..++... . .++..++..|.++....
T Consensus 445 ~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGym-tl~~~~~~-------~-~f~a~~~~~~~~~~~~~ 512 (620)
T COG1506 445 IRGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYM-TLLAATKT-------P-RFKAAVAVAGGVDWLLY 512 (620)
T ss_pred hhhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHH-HHHHHhcC-------c-hhheEEeccCcchhhhh
Confidence 135568888888 8888887765555 33 44444322 1 46666777776665543
No 85
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=34.83 E-value=1.2e+02 Score=28.25 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=41.0
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCCh--HHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAP--KQSLQLL 415 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP--~~a~~m~ 415 (429)
.++-|-.-|+.|.+++..-++...+... +. .+...-+||+||.-.| +...+.|
T Consensus 163 ~~PSLHi~G~~D~iv~~~~s~~L~~~~~-----------------------~a--~vl~HpggH~VP~~~~~~~~i~~fi 217 (230)
T KOG2551|consen 163 STPSLHIFGETDTIVPSERSEQLAESFK-----------------------DA--TVLEHPGGHIVPNKAKYKEKIADFI 217 (230)
T ss_pred CCCeeEEecccceeecchHHHHHHHhcC-----------------------CC--eEEecCCCccCCCchHHHHHHHHHH
Confidence 4778888999999999988887777644 11 4778889999998664 2334444
Q ss_pred HHHH
Q 042060 416 RHFL 419 (429)
Q Consensus 416 ~~fi 419 (429)
+.++
T Consensus 218 ~~~~ 221 (230)
T KOG2551|consen 218 QSFL 221 (230)
T ss_pred HHHH
Confidence 4443
No 86
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=34.48 E-value=78 Score=20.63 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=15.2
Q ss_pred eeEEEEEEecCCCCCCCCeEEEecCCCC
Q 042060 55 RALFYWFFEASSKPEEKPLLLWLNGVFL 82 (429)
Q Consensus 55 ~~lfywf~es~~~p~~~PlvlWlnGGPG 82 (429)
.+-+|||-.+........--+|+.+||+
T Consensus 11 ~NrYwwf~~s~~~~~~~~~~~~v~~~~~ 38 (38)
T PF15613_consen 11 GNRYWWFSSSSSNSQYYNGGRFVEQGPD 38 (38)
T ss_pred CceEEEEecccccCCCCCceEEEEeCCC
Confidence 4567777444443334445556666664
No 87
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=33.96 E-value=36 Score=31.07 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=31.5
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPK 409 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~ 409 (429)
.++.|-..|..|.+++...++...+... .. +-+.....||.||...+.
T Consensus 161 ~iPtlHv~G~~D~~~~~~~s~~L~~~~~-----------------------~~-~~v~~h~gGH~vP~~~~~ 208 (212)
T PF03959_consen 161 SIPTLHVIGENDPVVPPERSEALAEMFD-----------------------PD-ARVIEHDGGHHVPRKKED 208 (212)
T ss_dssp --EEEEEEETT-SSS-HHHHHHHHHHHH-----------------------HH-EEEEEESSSSS----HHH
T ss_pred CCCeEEEEeCCCCCcchHHHHHHHHhcc-----------------------CC-cEEEEECCCCcCcCChhh
Confidence 6999999999999999888877776644 12 457888999999997764
No 88
>PRK07868 acyl-CoA synthetase; Validated
Probab=33.64 E-value=73 Score=36.56 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=46.7
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEE-EEEcCCCccCC---CCChHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMF-VTVRGAGHQVP---TFAPKQSLQ 413 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf-~~V~gAGHmVP---~dqP~~a~~ 413 (429)
..++|+..|..|-++|....+.+.+.+. +..+ ..+.++|||.+ ..-|++...
T Consensus 297 ~~P~L~i~G~~D~ivp~~~~~~l~~~i~------------------------~a~~~~~~~~~GH~g~~~g~~a~~~~wp 352 (994)
T PRK07868 297 TCPVLAFVGEVDDIGQPASVRGIRRAAP------------------------NAEVYESLIRAGHFGLVVGSRAAQQTWP 352 (994)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCC------------------------CCeEEEEeCCCCCEeeeechhhhhhhCh
Confidence 5899999999999999999988877654 2333 45689999954 356777778
Q ss_pred HHHHHHcC
Q 042060 414 LLRHFLAN 421 (429)
Q Consensus 414 m~~~fi~~ 421 (429)
.+.+||..
T Consensus 353 ~i~~wl~~ 360 (994)
T PRK07868 353 TVADWVKW 360 (994)
T ss_pred HHHHHHHH
Confidence 88888874
No 89
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=32.28 E-value=17 Score=24.18 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.8
Q ss_pred hhhccChHHHHHhhCC
Q 042060 286 TEVYLNRPDVQKALHA 301 (429)
Q Consensus 286 ~~~ylN~~~Vr~AL~v 301 (429)
+-.-|++||||++|++
T Consensus 16 l~~~l~DpdvqrgL~~ 31 (42)
T PF07849_consen 16 LLRALRDPDVQRGLGF 31 (42)
T ss_pred HHHHHcCHHHHHHHHH
Confidence 4567999999999986
No 90
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=31.68 E-value=43 Score=30.36 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=23.1
Q ss_pred ceEEEEecCCCCCCCchhHHHHHHHcC
Q 042060 339 LRVWVYSGDTDGRIPVTATRYTLRKLG 365 (429)
Q Consensus 339 irVLiY~Gd~D~i~n~~Gt~~~i~~L~ 365 (429)
-+++|.+|..|.+||....+...+.|.
T Consensus 169 p~~~i~hG~~D~vVp~~~~~~~~~~l~ 195 (212)
T TIGR01840 169 PIMSVVHGDADYTVLPGNADEIRDAML 195 (212)
T ss_pred CeEEEEEcCCCceeCcchHHHHHHHHH
Confidence 457899999999999999988887764
No 91
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=30.98 E-value=50 Score=30.62 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHc
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKL 364 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L 364 (429)
+++++|++|+.|.+|+....++.++++
T Consensus 169 ~~P~~v~hG~~D~tV~~~n~~~~~~q~ 195 (220)
T PF10503_consen 169 GYPRIVFHGTADTTVNPQNADQLVAQW 195 (220)
T ss_pred CCCEEEEecCCCCccCcchHHHHHHHH
Confidence 578999999999999998877766653
No 92
>PLN02442 S-formylglutathione hydrolase
Probab=29.83 E-value=79 Score=30.25 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=35.7
Q ss_pred hCCceEEEEecCCCCCCCch-hHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCC
Q 042060 336 RGGLRVWVYSGDTDGRIPVT-ATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVP 404 (429)
Q Consensus 336 ~~~irVLiY~Gd~D~i~n~~-Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP 404 (429)
..+.+|||.+|+.|.+|+.. .++.+.+.+.= .| .+.++....|++|-..
T Consensus 215 ~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~---------------~g-----~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 215 DVSATILIDQGEADKFLKEQLLPENFEEACKE---------------AG-----APVTLRLQPGYDHSYF 264 (283)
T ss_pred ccCCCEEEEECCCCccccccccHHHHHHHHHH---------------cC-----CCeEEEEeCCCCccHH
Confidence 34789999999999999974 46666666540 00 2477888999999754
No 93
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=24.23 E-value=45 Score=30.08 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=12.3
Q ss_pred CCCCeEEEecCCCC
Q 042060 69 EEKPLLLWLNGVFL 82 (429)
Q Consensus 69 ~~~PlvlWlnGGPG 82 (429)
.+.|-|||.=||||
T Consensus 5 ~~~~~IifVlGGPG 18 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPG 18 (195)
T ss_pred ccCCCEEEEEcCCC
Confidence 46788999999999
No 94
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.21 E-value=1.8e+02 Score=27.44 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=43.8
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
...|.++.|+.|.+|...-...|-+..+ +.++ ..+...|||-+..|.++.+..+.+
T Consensus 176 ~~pi~~~~G~~D~~vs~~~~~~W~~~t~-----------------------~~f~-l~~fdGgHFfl~~~~~~v~~~i~~ 231 (244)
T COG3208 176 ACPIHAFGGEKDHEVSRDELGAWREHTK-----------------------GDFT-LRVFDGGHFFLNQQREEVLARLEQ 231 (244)
T ss_pred CcceEEeccCcchhccHHHHHHHHHhhc-----------------------CCce-EEEecCcceehhhhHHHHHHHHHH
Confidence 5789999999999987665555544322 2344 345667999999999999988888
Q ss_pred HHc
Q 042060 418 FLA 420 (429)
Q Consensus 418 fi~ 420 (429)
.+.
T Consensus 232 ~l~ 234 (244)
T COG3208 232 HLA 234 (244)
T ss_pred Hhh
Confidence 874
No 95
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=23.81 E-value=3.6e+02 Score=24.19 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=40.0
Q ss_pred HHHhCCceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCcc--C---CCCC
Q 042060 333 KLIRGGLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQ--V---PTFA 407 (429)
Q Consensus 333 ~LL~~~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHm--V---P~dq 407 (429)
..-+-..+||+..|..|..++....+...+.|.=.+ ....+.+..||+|= . +.+.
T Consensus 140 ~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~y~ga~HgF~~~~~~~~~ 199 (218)
T PF01738_consen 140 DAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAG--------------------VDVEVHVYPGAGHGFANPSRPPYD 199 (218)
T ss_dssp HGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTT--------------------TTEEEEEETT--TTTTSTTSTT--
T ss_pred hhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcC--------------------CcEEEEECCCCcccccCCCCcccC
Confidence 344457899999999999999999888888874111 24677778888885 2 2345
Q ss_pred hHHHHHHHHHHH
Q 042060 408 PKQSLQLLRHFL 419 (429)
Q Consensus 408 P~~a~~m~~~fi 419 (429)
++++.+..++.+
T Consensus 200 ~~aa~~a~~~~~ 211 (218)
T PF01738_consen 200 PAAAEDAWQRTL 211 (218)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 96
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=22.86 E-value=32 Score=33.22 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=43.1
Q ss_pred CceEEEEecCCCCCCCchhHHHHHHHcCCCCccccccceeCCeeeEEEEEeCCeEEEEEcCCCccCCCCChHHHHHHHHH
Q 042060 338 GLRVWVYSGDTDGRIPVTATRYTLRKLGLKTVEEWKPWYAEKQVGGWTIEYDGLMFVTVRGAGHQVPTFAPKQSLQLLRH 417 (429)
Q Consensus 338 ~irVLiY~Gd~D~i~n~~Gt~~~i~~L~w~~~~~~~~w~~~~~~~G~~k~~~~Ltf~~V~gAGHmVP~dqP~~a~~m~~~ 417 (429)
+.+||+..|+.-.-. -.+...-.+|+ -.+=|++.|.++|=||-.+||....+-|+-
T Consensus 219 ~c~vLlvvG~~Sp~~--~~vv~~ns~Ld----------------------p~~ttllkv~dcGglV~eEqP~klaea~~l 274 (283)
T PF03096_consen 219 GCPVLLVVGDNSPHV--DDVVEMNSKLD----------------------PTKTTLLKVADCGGLVLEEQPGKLAEAFKL 274 (283)
T ss_dssp CS-EEEEEETTSTTH--HHHHHHHHHS-----------------------CCCEEEEEETT-TT-HHHH-HHHHHHHHHH
T ss_pred CCCeEEEEecCCcch--hhHHHHHhhcC----------------------cccceEEEecccCCcccccCcHHHHHHHHH
Confidence 389999999975433 22334445564 125788999999999999999999999999
Q ss_pred HHcCCC
Q 042060 418 FLANKK 423 (429)
Q Consensus 418 fi~~~~ 423 (429)
|+.|.-
T Consensus 275 FlQG~G 280 (283)
T PF03096_consen 275 FLQGMG 280 (283)
T ss_dssp HHHHTT
T ss_pred HHccCC
Confidence 998753
No 97
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.27 E-value=81 Score=28.84 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEEeCCeEEEEEcCCCccCCCCCh
Q 042060 382 GGWTIEYDGLMFVTVRGAGHQVPTFAP 408 (429)
Q Consensus 382 ~G~~k~~~~Ltf~~V~gAGHmVP~dqP 408 (429)
.|.++....-+|+.|+||||..|.|.-
T Consensus 257 ~~~v~glkt~~~lev~ga~~ylp~yag 283 (310)
T COG4569 257 VGQVSGLKTAVWLEVEGAAHYLPAYAG 283 (310)
T ss_pred ceeeeccceEEEEEEecccccCccccC
Confidence 344554455789999999999998753
No 98
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=20.98 E-value=2.1e+02 Score=24.99 Aligned_cols=69 Identities=6% Similarity=-0.120 Sum_probs=45.3
Q ss_pred EEecCCCCCCCCeEEEecCC----CC-------CCCccccCCCCccccCCccccccceEEEE----------cCcHHHHH
Q 042060 61 FFEASSKPEEKPLLLWLNGV----FL-------DKPYTNRHIPIIPHLIYCTFWLCASILFA----------YGPKLAAS 119 (429)
Q Consensus 61 f~es~~~p~~~PlvlWlnGG----PG-------~GP~~~~~~~~l~~N~~~~SW~~anvL~i----------~~~~~~a~ 119 (429)
|++..-..+.|||-++.=|. || +|=+.+..++ ..+.- +|-| .+-++...
T Consensus 44 fiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l~m~D~g--e~D~K--------iiaV~~~dp~~~~i~~l~Dl~~ 113 (155)
T cd00412 44 FIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVLKMIDEG--ETDWK--------VIAVPVDDPRYSHINDISDVPP 113 (155)
T ss_pred ccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEEEeccCC--Cccce--------EEEeeCCCcccccCCChHHCCH
Confidence 55555567899998887776 77 5655554321 11122 3333 34566778
Q ss_pred HHHhhhHHHHHhcccccCCc
Q 042060 120 IFSHNPLSYHLRMHRNLECD 139 (429)
Q Consensus 120 d~~~fL~~F~~~fPe~~~~~ 139 (429)
.+.+-+++||+.+..+.+.+
T Consensus 114 ~~l~~I~~fF~~YK~le~~k 133 (155)
T cd00412 114 HLLDEIKHFFEHYKDLEGKK 133 (155)
T ss_pred HHHHHHHHHHHHhcccCCCC
Confidence 88999999999998887633
No 99
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=20.73 E-value=91 Score=21.76 Aligned_cols=22 Identities=0% Similarity=-0.103 Sum_probs=16.9
Q ss_pred HHHHHHHhhhHHHHH-hcccccC
Q 042060 116 LAASIFSHNPLSYHL-RMHRNLE 137 (429)
Q Consensus 116 ~~a~d~~~fL~~F~~-~fPe~~~ 137 (429)
..-..++.+++.||. +|||+.+
T Consensus 14 ~ei~~~~~~lre~Y~~~FPEL~~ 36 (53)
T PF08060_consen 14 KEINLLHMRLREWYSWHFPELES 36 (53)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HHHHHHHHHHHHHHHccchhHHH
Confidence 344567899999997 6999854
No 100
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=20.64 E-value=89 Score=26.32 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.4
Q ss_pred CCCCCeEEEecCCCCCC
Q 042060 68 PEEKPLLLWLNGVFLDK 84 (429)
Q Consensus 68 p~~~PlvlWlnGGPG~G 84 (429)
..++||||=|.|.||.|
T Consensus 49 ~p~KpLVlSfHG~tGtG 65 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTG 65 (127)
T ss_pred CCCCCEEEEeecCCCCc
Confidence 35789999999999944
No 101
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=20.41 E-value=88 Score=28.23 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=12.8
Q ss_pred CCCCCeEEEecCCCC
Q 042060 68 PEEKPLLLWLNGVFL 82 (429)
Q Consensus 68 p~~~PlvlWlnGGPG 82 (429)
.+..|+||+|.|+++
T Consensus 10 ~~~~P~vv~lHG~~~ 24 (212)
T TIGR01840 10 TGPRALVLALHGCGQ 24 (212)
T ss_pred CCCCCEEEEeCCCCC
Confidence 456899999999987
Done!