Query 042061
Match_columns 142
No_of_seqs 173 out of 1503
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0157 Cytochrome P450 CYP4/C 100.0 1.7E-40 3.7E-45 260.2 10.6 141 1-142 354-495 (497)
2 KOG0158 Cytochrome P450 CYP3/C 100.0 4.4E-40 9.6E-45 254.8 12.4 139 1-142 356-498 (499)
3 PLN02169 fatty acid (omega-1)- 100.0 1.6E-39 3.6E-44 254.9 12.0 142 1-142 357-499 (500)
4 PLN02290 cytokinin trans-hydro 100.0 3.1E-38 6.7E-43 248.3 11.5 138 1-142 377-514 (516)
5 PLN03195 fatty acid omega-hydr 100.0 2E-38 4.4E-43 249.3 9.8 141 1-142 374-515 (516)
6 PLN02500 cytochrome P450 90B1 100.0 6.5E-38 1.4E-42 245.2 11.6 139 1-142 346-489 (490)
7 KOG0159 Cytochrome P450 CYP11/ 100.0 3.7E-38 8E-43 241.6 9.2 139 1-142 379-517 (519)
8 PLN02774 brassinosteroid-6-oxi 100.0 1.7E-37 3.7E-42 241.4 10.7 134 1-141 329-462 (463)
9 PLN02426 cytochrome P450, fami 100.0 2.4E-37 5.2E-42 242.8 11.5 141 1-142 356-499 (502)
10 PF00067 p450: Cytochrome P450 100.0 1E-37 2.2E-42 238.2 8.6 137 1-139 324-463 (463)
11 PLN03141 3-epi-6-deoxocathaste 100.0 3E-37 6.5E-42 239.3 10.8 133 1-142 317-449 (452)
12 PLN02738 carotene beta-ring hy 100.0 8E-37 1.7E-41 244.9 12.5 141 1-142 452-594 (633)
13 PTZ00404 cytochrome P450; Prov 100.0 7.3E-37 1.6E-41 238.7 11.2 134 1-142 345-482 (482)
14 PLN02183 ferulate 5-hydroxylas 100.0 8.6E-37 1.9E-41 240.2 11.2 141 1-142 366-511 (516)
15 PLN03234 cytochrome P450 83B1; 100.0 7.4E-37 1.6E-41 239.5 10.6 142 1-142 350-498 (499)
16 PLN00168 Cytochrome P450; Prov 100.0 1E-36 2.2E-41 240.0 11.2 141 1-142 369-516 (519)
17 PLN00110 flavonoid 3',5'-hydro 100.0 1.1E-36 2.4E-41 239.1 10.4 141 1-142 351-496 (504)
18 PLN02987 Cytochrome P450, fami 100.0 3.4E-36 7.3E-41 234.8 10.8 137 1-142 332-468 (472)
19 PLN02966 cytochrome P450 83A1 100.0 4.3E-36 9.2E-41 235.6 11.4 118 1-119 353-471 (502)
20 PLN02394 trans-cinnamate 4-mon 100.0 4.4E-36 9.5E-41 235.4 11.3 141 1-142 355-501 (503)
21 PLN02655 ent-kaurene oxidase 100.0 5.2E-36 1.1E-40 233.3 11.3 139 1-142 323-463 (466)
22 PLN02196 abscisic acid 8'-hydr 100.0 3.6E-36 7.9E-41 234.0 9.8 133 1-141 329-461 (463)
23 KOG0156 Cytochrome P450 CYP2 s 100.0 5.5E-36 1.2E-40 233.3 10.5 137 1-141 348-486 (489)
24 PLN02971 tryptophan N-hydroxyl 100.0 6.9E-36 1.5E-40 236.4 11.1 140 1-142 389-533 (543)
25 PLN02302 ent-kaurenoic acid ox 100.0 6.6E-36 1.4E-40 233.4 10.4 135 1-142 353-487 (490)
26 PLN02936 epsilon-ring hydroxyl 100.0 1.8E-35 3.9E-40 231.5 11.7 141 1-142 339-481 (489)
27 PLN02687 flavonoid 3'-monooxyg 100.0 2E-35 4.3E-40 232.5 11.1 141 1-142 359-508 (517)
28 PLN03018 homomethionine N-hydr 100.0 3.6E-35 7.8E-40 231.9 12.4 140 1-142 376-523 (534)
29 PLN03112 cytochrome P450 famil 100.0 7.3E-35 1.6E-39 229.1 11.1 141 1-142 358-507 (514)
30 KOG0684 Cytochrome P450 [Secon 100.0 1.3E-34 2.7E-39 218.5 8.2 141 1-142 336-484 (486)
31 COG2124 CypX Cytochrome P450 [ 100.0 6.8E-32 1.5E-36 207.5 8.6 127 2-141 283-409 (411)
32 PLN02648 allene oxide synthase 100.0 1.3E-29 2.8E-34 197.9 9.7 115 1-120 336-464 (480)
33 PF12508 DUF3714: Protein of u 87.7 0.57 1.2E-05 33.1 2.7 39 2-41 56-94 (200)
34 TIGR03779 Bac_Flav_CT_M Bacter 77.0 2.4 5.3E-05 33.2 2.7 39 2-41 259-297 (410)
35 PF11138 DUF2911: Protein of u 75.1 6.5 0.00014 26.3 4.0 41 22-64 52-99 (145)
36 PF08492 SRP72: SRP72 RNA-bind 71.0 1.7 3.7E-05 24.4 0.4 8 61-68 44-51 (59)
37 PF09201 SRX: SRX; InterPro: 65.5 5.8 0.00013 26.3 2.1 22 89-110 19-40 (148)
38 PF12444 Sox_N: Sox developmen 59.5 7 0.00015 23.6 1.6 21 98-118 60-80 (84)
39 PF14550 Peptidase_U35_2: Puta 54.2 9.3 0.0002 24.8 1.6 30 21-53 72-101 (122)
40 KOG3506 40S ribosomal protein 43.2 11 0.00023 20.8 0.5 10 82-91 13-22 (56)
41 COG2101 SPT15 TATA-box binding 42.4 10 0.00022 26.3 0.4 36 58-94 35-70 (185)
42 PRK06789 flagellar motor switc 36.6 43 0.00094 19.7 2.4 39 4-42 21-62 (74)
43 PF07886 BA14K: BA14K-like pro 32.8 38 0.00083 16.3 1.5 16 76-91 16-31 (31)
44 cd04518 TBP_archaea archaeal T 32.0 16 0.00036 25.1 0.2 35 58-93 29-63 (174)
45 KOG3302 TATA-box binding prote 32.0 25 0.00054 24.8 1.0 35 58-93 50-84 (200)
46 PF11227 DUF3025: Protein of u 31.6 31 0.00067 24.7 1.5 18 46-64 194-211 (212)
47 PRK14759 potassium-transportin 31.5 21 0.00044 17.0 0.4 6 60-65 24-29 (29)
48 cd00652 TBP_TLF TATA box bindi 26.8 72 0.0016 21.9 2.6 35 58-93 29-63 (174)
49 PF02663 FmdE: FmdE, Molybdenu 24.6 95 0.0021 20.0 2.8 22 88-109 5-26 (131)
50 PRK00394 transcription factor; 23.8 31 0.00067 23.9 0.3 34 58-92 28-61 (179)
51 COG3718 IolB Uncharacterized e 23.0 1.2E+02 0.0026 22.3 3.2 39 3-41 183-225 (270)
52 PTZ00218 40S ribosomal protein 22.6 38 0.00082 18.7 0.5 13 82-94 11-25 (54)
53 KOG3262 H/ACA small nucleolar 21.7 94 0.002 21.9 2.3 37 31-70 106-143 (215)
54 PLN00062 TATA-box-binding prot 20.9 33 0.00071 23.8 0.0 35 58-93 29-63 (179)
No 1
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=260.17 Aligned_cols=141 Identities=33% Similarity=0.691 Sum_probs=129.2
Q ss_pred CcchhhhhccCCCCCccceeeeccceeec-CEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLG-DFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~-g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|++||+|||||||++|.+.|.+.+|++++ ||.||+|+.|.++++++|||+.+|++||++|+|+||+++.....+ ++++
T Consensus 354 l~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~-~~~~ 432 (497)
T KOG0157|consen 354 LEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKR-HPFA 432 (497)
T ss_pred HHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCC-CCcc
Confidence 46899999999999999999999999995 899999999999999999999999779999999999976443322 6799
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
|+|||+|+|.|+|++||++|||++++.++++|+|+++.+....+....+++|++|++|++++|
T Consensus 433 fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~v~~~~r 495 (497)
T KOG0157|consen 433 FIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDKPKPVPELTLRPKNGLKVKLRPR 495 (497)
T ss_pred ccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCCceeeeEEEEEecCCeEEEEEeC
Confidence 999999999999999999999999999999999999877546667889999999999999987
No 2
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-40 Score=254.85 Aligned_cols=139 Identities=39% Similarity=0.763 Sum_probs=125.6
Q ss_pred CcchhhhhccCCCCCccceeeeccceeec-CEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLG-DFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~-g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|++||+||||+||+++.+.|.+++|++++ ++.|++|+.|+++.+++||||++| +||++|+||||.+++.. ..++..
T Consensus 356 Ld~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~-p~Pe~F~PERF~~~~~~--~~~~~~ 432 (499)
T KOG0158|consen 356 LDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYW-PEPEKFKPERFEEENNK--SRHPGA 432 (499)
T ss_pred HHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCCcccC-CCcccCCCccCCCCccc--ccCCcc
Confidence 68999999999999999999999999999 999999999999999999999999 99999999999987543 226899
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCc---ceEeeeCCCeeEEEEEC
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSR---GITVYPQHGAHMILNKL 142 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~---~~~~~p~~~~~v~~~~r 142 (142)
|+|||.|+|+|+|++||++|+|++|+.||++|+++..+.....-.. .+++.|++|+++++++|
T Consensus 433 ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~~~~~~~~~~~l~pk~gi~Lkl~~r 498 (499)
T KOG0158|consen 433 YLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTIIPLEGDPKGFTLSPKGGIWLKLEPR 498 (499)
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccCcccCCccceeeecCCceEEEEEeC
Confidence 9999999999999999999999999999999999987743222222 67899999999999987
No 3
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=1.6e-39 Score=254.88 Aligned_cols=142 Identities=22% Similarity=0.454 Sum_probs=123.0
Q ss_pred CcchhhhhccCCCCCccceeeeccceee-cCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKL-GDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|+||++|+||+||+++.+.|.+.+|.++ +|+.||+|+.|.++.|++||||++||+||++|+||||++++........+.
T Consensus 357 l~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~ 436 (500)
T PLN02169 357 LHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYK 436 (500)
T ss_pred HHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCcc
Confidence 5799999999999999988887776555 899999999999999999999999987999999999997533211113678
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
|+|||.|+|.|+|++||++|++++++.|+++|+++++++.........+++|++++++++++|
T Consensus 437 ~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 437 FMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHKIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred ccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCCCcccccceEEecCCCEEEEEEeC
Confidence 999999999999999999999999999999999999765444444567889999999999986
No 4
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=3.1e-38 Score=248.25 Aligned_cols=138 Identities=42% Similarity=0.826 Sum_probs=123.3
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSF 80 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~ 80 (142)
|+|||+|+||++|+++.++|.+.+|++++|+.||+||.|.++.+++|+||++|++||++|+||||++... . ....+
T Consensus 377 l~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~-~~~~~ 452 (516)
T PLN02290 377 LNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---A-PGRHF 452 (516)
T ss_pred HHHHHHHHHHcCCCccccceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---C-CCCeE
Confidence 5799999999999999889999999999999999999999999999999999966999999999995421 1 34579
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 81 FPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 81 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
+|||.|+|.|+|++||++|++++++.|+++|++++.++.........+..|.++++|++++|
T Consensus 453 ~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 514 (516)
T PLN02290 453 IPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPL 514 (516)
T ss_pred ecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcccCccceeeecCCCCCeEEEEeC
Confidence 99999999999999999999999999999999998776433444468899999999999986
No 5
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=2e-38 Score=249.32 Aligned_cols=141 Identities=24% Similarity=0.403 Sum_probs=120.7
Q ss_pred CcchhhhhccCCCCCccceeeeccceee-cCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKL-GDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|+|||+|+||++|+++...|.+.+|..+ +|+.||+|+.|.++.+++|+||++||+||++|+||||++++..... .++.
T Consensus 374 l~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~-~~~~ 452 (516)
T PLN03195 374 LHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNA-SPFK 452 (516)
T ss_pred HHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCC-CCce
Confidence 5799999999999999887877777665 8999999999999999999999999889999999999964321111 4567
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
|+|||.|+|.|+|++||++|++++++.++++|++++.++.........+..|.++++|++++|
T Consensus 453 ~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 515 (516)
T PLN03195 453 FTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVKYRMMTILSMANGLKVTVSRR 515 (516)
T ss_pred EeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCcceeeeeeEEecCCCEEEEEEeC
Confidence 999999999999999999999999999999999998765433333446688999999999987
No 6
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=6.5e-38 Score=245.17 Aligned_cols=139 Identities=24% Similarity=0.492 Sum_probs=119.2
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccc-----cC
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAA-----KN 75 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~-----~~ 75 (142)
|+|||+|+||++|+++.++|.+.+|++++||.||||+.|+++.+++||||++| +||++|+||||+++..... ..
T Consensus 346 l~avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~ 424 (490)
T PLN02500 346 TQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLY-DQPQLFNPWRWQQNNNRGGSSGSSSA 424 (490)
T ss_pred HHHHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhhcccCcccC-CCccccChhhccCCCcccccccccCC
Confidence 46999999999999998889999999999999999999999999999999999 8999999999997532111 01
Q ss_pred CCccceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 76 NEVSFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 76 ~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
.++.++|||.|+|.|+|++||.+|++++++.|+++|+|++.++...... ....+.++++|+++++
T Consensus 425 ~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 489 (490)
T PLN02500 425 TTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQAFAF--PFVDFPKGLPIRVRRI 489 (490)
T ss_pred CCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCcceec--ccccCCCCceEEEEeC
Confidence 3568999999999999999999999999999999999998766433222 2345568999999874
No 7
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-38 Score=241.57 Aligned_cols=139 Identities=24% Similarity=0.415 Sum_probs=129.4
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSF 80 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~ 80 (142)
|.||||||+||||.++++.|+..+|.+++||.|||||.|.++.+.+.+||++| ++|++|+||||++++. ...+++.+
T Consensus 379 LrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F-~~p~~F~PeRWL~~~~--~~~~pF~~ 455 (519)
T KOG0159|consen 379 LRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYF-PDPEEFLPERWLKPST--KTIHPFAS 455 (519)
T ss_pred HHHHHHhhhceeccccccccccchhceeccceecCCCeEEEeehhhccChhhC-CCccccChhhhccccc--CCCCCcee
Confidence 57999999999999999999999999999999999999999999999999999 8999999999999763 22378999
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 81 FPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 81 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
+|||.|+|+|+|+++|.+||.++|++++++|+++.....+......+++.|..++.++|++|
T Consensus 456 LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~pv~~~~~~il~P~~~l~f~f~~r 517 (519)
T KOG0159|consen 456 LPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEEPVEYVYRFILVPNRPLRFKFRPR 517 (519)
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCCCccceeEEEEcCCCCcceeeeeC
Confidence 99999999999999999999999999999999999887667777889999999999999886
No 8
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=1.7e-37 Score=241.38 Aligned_cols=134 Identities=21% Similarity=0.404 Sum_probs=117.8
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSF 80 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~ 80 (142)
|+|+|+|+||++|+++.+.|.+.+|++++|+.||||+.|+++.+.+|+||++| +||++|+||||++++.. ....+
T Consensus 329 l~a~ikE~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~-~dP~~F~PeRfl~~~~~----~~~~~ 403 (463)
T PLN02774 329 TRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLY-PDPMTFNPWRWLDKSLE----SHNYF 403 (463)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccC-CChhccCchhcCCCCcC----CCccc
Confidence 46899999999999988889999999999999999999999999999999999 89999999999965321 12469
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEE
Q 042061 81 FPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNK 141 (142)
Q Consensus 81 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 141 (142)
+|||+|+|.|+|+++|.+|++++++.|+++|++++.++.... ...+..|++|++|++++
T Consensus 404 lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~~--~~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 404 FLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKLM--KFPRVEAPNGLHIRVSP 462 (463)
T ss_pred cCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCccc--cCCCCCCCCCceEEeee
Confidence 999999999999999999999999999999999997664322 22355689999999875
No 9
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=2.4e-37 Score=242.79 Aligned_cols=141 Identities=21% Similarity=0.406 Sum_probs=122.1
Q ss_pred CcchhhhhccCCCCCccceeeeccceee-cCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKL-GDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|+|||+|+||++|+++...|.+.+|.++ +|+.||+||.|.++.+++||||++||+||++|+||||+++... .....+.
T Consensus 356 l~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~-~~~~~~~ 434 (502)
T PLN02426 356 LHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVF-VPENPFK 434 (502)
T ss_pred HHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCc-CCCCCcc
Confidence 5799999999999999888999988887 8999999999999999999999999999999999999974211 1113567
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCC--CCCCcceEeeeCCCeeEEEEEC
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYA--HAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~~~~~~p~~~~~v~~~~r 142 (142)
++|||.|+|.|+|+++|.+|++++++.++++|+++.+++.. ......+++.|+++++|++++|
T Consensus 435 ~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r 499 (502)
T PLN02426 435 YPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRER 499 (502)
T ss_pred cCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEc
Confidence 99999999999999999999999999999999999864322 2333467899999999999986
No 10
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=1e-37 Score=238.24 Aligned_cols=137 Identities=33% Similarity=0.693 Sum_probs=116.0
Q ss_pred CcchhhhhccCCCCCc-cceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVS-FIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~-~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|+|||+|++|++|+++ .++|.+.+|++++|+.||+|+.|.++.+++|+||++| +||++|+|+||++.... .......
T Consensus 324 l~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~-~dp~~F~P~R~~~~~~~-~~~~~~~ 401 (463)
T PF00067_consen 324 LDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYF-PDPDEFDPERFLDERGI-SNRPSFA 401 (463)
T ss_dssp HHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTS-SSTTS--TTGGBTTTST-BCSSSTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc-ccccccc
Confidence 5799999999999999 6899999999999999999999999999999999999 99999999999987551 1126789
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcc--eEeeeCCCeeEEE
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRG--ITVYPQHGAHMIL 139 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~--~~~~p~~~~~v~~ 139 (142)
++|||.|+|.|+|++||.+|++++++.++++|+++++++........ ..+.|..++.|+|
T Consensus 402 ~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 402 FLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEPEPQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp SSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence 99999999999999999999999999999999999976543333322 3566666777775
No 11
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=3e-37 Score=239.34 Aligned_cols=133 Identities=25% Similarity=0.434 Sum_probs=120.5
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSF 80 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~ 80 (142)
|+|||+|++|++|+++.++|.+.+|++++||.||+|+.|+++.+++|+|+++| +||++|+||||++++. .+..|
T Consensus 317 l~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~~-----~~~~~ 390 (452)
T PLN03141 317 TQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENY-DNPYQFNPWRWQEKDM-----NNSSF 390 (452)
T ss_pred HHHHHHHHHhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhccCCchhc-CCccccCcccccCCCC-----CCCCC
Confidence 47999999999999888899999999999999999999999999999999999 8999999999997521 35689
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 81 FPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 81 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
+|||.|+|.|+|++||.+|++++++.|+++|+|++.++.. ....++.|.+++.|++++|
T Consensus 391 ~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 449 (452)
T PLN03141 391 TPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTI---VNFPTVRMKRKLPIWVTRI 449 (452)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCe---eecccccCCCCceEEEEeC
Confidence 9999999999999999999999999999999999876532 2235789999999999987
No 12
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=8e-37 Score=244.88 Aligned_cols=141 Identities=31% Similarity=0.623 Sum_probs=122.3
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccc-cccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSK-AAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~-~~~~~~~~ 79 (142)
|+|||+|+|||||+++.+.|.+.+|.+++||.||+||.|.++.+.+|+||++| +||++|+||||+.+... ........
T Consensus 452 L~AVIkEtLRL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~if-pdP~~F~PERWl~~~~~~~~~~~~~~ 530 (633)
T PLN02738 452 TTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHW-DDAEKFNPERWPLDGPNPNETNQNFS 530 (633)
T ss_pred HHHHHHHHHhcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCcccc-CCccccCcccCCCCCCCccccCCCCc
Confidence 57999999999999998889999999999999999999999999999999999 89999999999853211 11114578
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCC-CCCCcceEeeeCCCeeEEEEEC
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYA-HAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~-~~~~~~~~~~p~~~~~v~~~~r 142 (142)
++|||.|+|.|+|++||++|++++++.|+++|+|++.++.. .......+..|.++++|++++|
T Consensus 531 ~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~~~~~~~~~~~~p~~~l~v~l~~R 594 (633)
T PLN02738 531 YLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAPPVKMTTGATIHTTEGLKMTVTRR 594 (633)
T ss_pred eeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCCCcccccceEEeeCCCcEEEEEEC
Confidence 99999999999999999999999999999999999876542 2223457888999999999986
No 13
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=7.3e-37 Score=238.70 Aligned_cols=134 Identities=26% Similarity=0.482 Sum_probs=118.3
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceee-cCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCc
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKL-GDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEV 78 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~ 78 (142)
|+|||+|+||+||+++. ++|.+.+|+++ +|+.||+|+.|.++.+++|+||++| +||++|+||||+++. ...
T Consensus 345 l~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~-~dP~~F~PeRwl~~~------~~~ 417 (482)
T PTZ00404 345 TVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYF-ENPEQFDPSRFLNPD------SND 417 (482)
T ss_pred HHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCcccc-CCccccCccccCCCC------CCC
Confidence 47999999999999986 68999999999 9999999999999999999999999 899999999998642 467
Q ss_pred cceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCC--CCCcceEeeeCCCeeEEEEEC
Q 042061 79 SFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAH--APSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 79 ~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~~~~~~p~~~~~v~~~~r 142 (142)
.++|||.|+|.|+|++||++|++++++.++++|+++..++... ....+.++.| +++++.+++|
T Consensus 418 ~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~R 482 (482)
T PTZ00404 418 AFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYGLTLKP-NKFKVLLEKR 482 (482)
T ss_pred ceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCcccccceeecC-CCceeeeecC
Confidence 8999999999999999999999999999999999998755422 1233566664 5899999987
No 14
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=8.6e-37 Score=240.22 Aligned_cols=141 Identities=21% Similarity=0.448 Sum_probs=116.0
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSF 80 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~ 80 (142)
|+|||+|+||++|+++...|.+.+|++++||.|||||.|.++.+++|+||++| +||++|+||||++++........+.|
T Consensus 366 l~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~ 444 (516)
T PLN02183 366 LKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSW-EDPDTFKPSRFLKPGVPDFKGSHFEF 444 (516)
T ss_pred HHHHHHHHhccCCCccceeeeccCceeECCEEECCCCEEEEehhhhcCCcccc-CCccccCchhhCCCCCccccCCccee
Confidence 47899999999999998889999999999999999999999999999999999 89999999999975432211245689
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCC-----CcceEeeeCCCeeEEEEEC
Q 042061 81 FPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAP-----SRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 81 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~v~~~~r 142 (142)
+|||.|+|.|+|++||++|++++++.|+++|+++..++....+ ..+.+..+...+.+.+++|
T Consensus 445 lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 445 IPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 9999999999999999999999999999999999876532111 1123322334666666655
No 15
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=7.4e-37 Score=239.54 Aligned_cols=142 Identities=21% Similarity=0.469 Sum_probs=120.9
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccc-cccCCCc
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSK-AAKNNEV 78 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~-~~~~~~~ 78 (142)
|+|||+|+||++|+++. +.|.+.+|++++||.||+||.|.++.+++|+||++|++||++|+||||+++... .......
T Consensus 350 l~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~ 429 (499)
T PLN03234 350 LKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDF 429 (499)
T ss_pred HHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcc
Confidence 47999999999999997 479999999999999999999999999999999999779999999999975332 1112466
Q ss_pred cceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCC---CC--CCcceEeeeCCCeeEEEEEC
Q 042061 79 SFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYA---HA--PSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 79 ~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~---~~--~~~~~~~~p~~~~~v~~~~r 142 (142)
.++|||.|+|.|+|+++|.+|++++++.|+++|++++.++.. .. ...+++..|+..+.+.+++|
T Consensus 430 ~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 430 ELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred eEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 899999999999999999999999999999999999976521 11 23356667888999888875
No 16
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=1e-36 Score=239.96 Aligned_cols=141 Identities=22% Similarity=0.451 Sum_probs=120.5
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCcccc----ccC
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKA----AKN 75 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~----~~~ 75 (142)
|+|||+|+||++|+++. ++|.+.+|++++||.||+|+.|.++.+++|+||++| +||++|+||||+++.... ...
T Consensus 369 l~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~-~~p~~F~PeRf~~~~~~~~~~~~~~ 447 (519)
T PLN00168 369 LKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREW-ERPMEFVPERFLAGGDGEGVDVTGS 447 (519)
T ss_pred HHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCcccc-CCccccCcccCCCCCCCcccccccc
Confidence 46899999999999986 589999999999999999999999999999999999 899999999999742210 111
Q ss_pred CCccceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCC--CcceEeeeCCCeeEEEEEC
Q 042061 76 NEVSFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAP--SRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 76 ~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~--~~~~~~~p~~~~~v~~~~r 142 (142)
..+.++|||.|+|.|+|++||.+|++++++.|+++|+|++.++..... ...++..+.+++++++++|
T Consensus 448 ~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 516 (519)
T PLN00168 448 REIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPR 516 (519)
T ss_pred CCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEEec
Confidence 346899999999999999999999999999999999999876533222 2346778888999999886
No 17
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=1.1e-36 Score=239.08 Aligned_cols=141 Identities=21% Similarity=0.455 Sum_probs=121.5
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCcccccc--CCC
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAK--NNE 77 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~--~~~ 77 (142)
|+|||+|+||++|+++. ++|.+.+|++++||.||+|+.|.++.+++|+||++| +||++|+||||+++...... ...
T Consensus 351 l~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~ 429 (504)
T PLN00110 351 LQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVW-ENPEEFRPERFLSEKNAKIDPRGND 429 (504)
T ss_pred HHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhc-CCcccCCcccccCCCCcccccCCCe
Confidence 47899999999999987 789999999999999999999999999999999999 89999999999965322111 123
Q ss_pred ccceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCC--CCcceEeeeCCCeeEEEEEC
Q 042061 78 VSFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHA--PSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 78 ~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~--~~~~~~~~p~~~~~v~~~~r 142 (142)
..++|||.|+|.|+|++||.+|++++++.|+++|++++.++.... .....++.|..++.+++++|
T Consensus 430 ~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 496 (504)
T PLN00110 430 FELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPR 496 (504)
T ss_pred eeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCccCcccccccccccCCCceEeeccC
Confidence 579999999999999999999999999999999999987664322 23456778999999999886
No 18
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00 E-value=3.4e-36 Score=234.79 Aligned_cols=137 Identities=26% Similarity=0.435 Sum_probs=121.8
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSF 80 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~ 80 (142)
|+|+++|+||++|+++.+.|.+.+|++++||.||+|+.|.++.+.+|+||++| +||++|+||||++..... . ....+
T Consensus 332 l~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~F~PeRfl~~~~~~-~-~~~~~ 408 (472)
T PLN02987 332 TQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYF-KDARTFNPWRWQSNSGTT-V-PSNVF 408 (472)
T ss_pred HHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhhCCcccC-CCccccCcccCCCCCCCC-C-CCcce
Confidence 46899999999999988889999999999999999999999999999999999 899999999999753221 1 34689
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 81 FPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 81 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
+|||.|+|.|+|++||.+|++++++.|+++|++++.++.... ...+++|.+++++++++|
T Consensus 409 l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~--~~~~~~p~~~~~~~~~~r 468 (472)
T PLN02987 409 TPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDKLV--FFPTTRTQKRYPINVKRR 468 (472)
T ss_pred ECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCcee--ecccccCCCCceEEEEec
Confidence 999999999999999999999999999999999998765432 245889999999999986
No 19
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=4.3e-36 Score=235.58 Aligned_cols=118 Identities=28% Similarity=0.577 Sum_probs=106.7
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|+|+|+|+||++|+++. ++|.+.+|++++|+.||+||.|.++.+++||||++||+||++|+||||+++.... ......
T Consensus 353 l~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~-~~~~~~ 431 (502)
T PLN02966 353 FRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDF-KGTDYE 431 (502)
T ss_pred HHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCc-CCCcCC
Confidence 47899999999999997 6899999999999999999999999999999999998899999999999753321 114678
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCC
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTY 119 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~ 119 (142)
|+|||.|+|.|+|++||.+|++++++.++++|+|++.++.
T Consensus 432 ~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~ 471 (502)
T PLN02966 432 FIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGM 471 (502)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCC
Confidence 9999999999999999999999999999999999987664
No 20
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=4.4e-36 Score=235.37 Aligned_cols=141 Identities=24% Similarity=0.464 Sum_probs=118.1
Q ss_pred CcchhhhhccCCCCCccc-eeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccc-cccCCCc
Q 042061 1 VGKIIYEVFRIYSPVSFI-FRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSK-AAKNNEV 78 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~-~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~-~~~~~~~ 78 (142)
|+|||+|+||++|+++.. +|.+.+|++++||.||+||.|.++.+++|+||++| +||++|+||||++++.. .......
T Consensus 355 l~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~-~~P~~F~PeRwl~~~~~~~~~~~~~ 433 (503)
T PLN02394 355 LQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELW-KNPEEFRPERFLEEEAKVEANGNDF 433 (503)
T ss_pred HHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccC-CCccccCccccCCCCCcccccCCCC
Confidence 579999999999999974 78889999999999999999999999999999999 89999999999975321 1111356
Q ss_pred cceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCC-CCCC--c-ceEeeeCCCeeEEEEEC
Q 042061 79 SFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYA-HAPS--R-GITVYPQHGAHMILNKL 142 (142)
Q Consensus 79 ~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~-~~~~--~-~~~~~p~~~~~v~~~~r 142 (142)
.++|||.|+|.|+|++||.+|++++++.++++|++++.++.+ .... . +++........+++.+|
T Consensus 434 ~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 501 (503)
T PLN02394 434 RFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPR 501 (503)
T ss_pred ceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecC
Confidence 899999999999999999999999999999999999876542 2222 2 34554455888888887
No 21
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=5.2e-36 Score=233.28 Aligned_cols=139 Identities=26% Similarity=0.481 Sum_probs=121.5
Q ss_pred CcchhhhhccCCCCCccc-eeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSFI-FRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~-~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|+|+++|+||++|+++.. +|.+.+|++++|+.||+|+.|+++.+++|+|+++| +||++|+|+||+++..... ..+.
T Consensus 323 l~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~-~~p~~F~PeR~~~~~~~~~--~~~~ 399 (466)
T PLN02655 323 LNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRW-ENPEEWDPERFLGEKYESA--DMYK 399 (466)
T ss_pred HHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccC-CChhccCccccCCCCcccC--Cccc
Confidence 478999999999999875 79999999999999999999999999999999999 8999999999997532111 3478
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCC-CCCCCcceEeeeCCCeeEEEEEC
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTY-AHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
++|||.|+|.|+|++||..|++++++.|+++|++++.++. ......+++..|.+++.+++++|
T Consensus 400 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 463 (466)
T PLN02655 400 TMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDEEKEDTVQLTTQKLHPLHAHLKPR 463 (466)
T ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCccccchhheeEeecCCcEEEEeec
Confidence 9999999999999999999999999999999999987553 23334467788999999999876
No 22
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=3.6e-36 Score=234.02 Aligned_cols=133 Identities=26% Similarity=0.530 Sum_probs=119.5
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSF 80 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~ 80 (142)
|+|+|+|+||++|+++...|.+.+|+.++||.||+|+.|.++.+++|+|+++| +||++|+||||++.. .+..+
T Consensus 329 l~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~-~dP~~F~PeRfl~~~------~~~~~ 401 (463)
T PLN02196 329 TSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIF-SDPGKFDPSRFEVAP------KPNTF 401 (463)
T ss_pred HHHHHHHHHhcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhc-CCcCccChhhhcCCC------CCCcc
Confidence 47899999999999998889999999999999999999999999999999999 899999999999632 35789
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEE
Q 042061 81 FPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNK 141 (142)
Q Consensus 81 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 141 (142)
+|||.|+|.|+|+++|++|++++++.|+++|++++.+++. ......+..|+++++|++++
T Consensus 402 lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 402 MPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSN-GIQYGPFALPQNGLPIALSR 461 (463)
T ss_pred cCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC-ceEEcccccCCCCceEEEec
Confidence 9999999999999999999999999999999999986643 23345567899999999875
No 23
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-36 Score=233.33 Aligned_cols=137 Identities=28% Similarity=0.557 Sum_probs=115.3
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCcc
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVS 79 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~ 79 (142)
|+|+|+|++|+||++|. ++|.+++|+.|+||.||+||.|+++.+++++||++| +||++|+||||++++ ..+. ....
T Consensus 348 L~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw-~dP~eF~PERFl~~~-d~~~-~~~~ 424 (489)
T KOG0156|consen 348 LKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVW-EDPEEFKPERFLDSN-DGKG-LDFK 424 (489)
T ss_pred HHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccC-CCccccChhhhcCCc-cccC-CceE
Confidence 57999999999999996 799999999999999999999999999999999999 899999999999974 1111 4788
Q ss_pred ceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCC-CCCCCcceEeeeCCCeeEEEEE
Q 042061 80 FFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTY-AHAPSRGITVYPQHGAHMILNK 141 (142)
Q Consensus 80 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~ 141 (142)
++|||.|+|.|||+.+|.+++.++++.|+++|+|++..+. +.... ..++....++.....+
T Consensus 425 ~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~~~d~~e~-~~~~~~~~pl~~~~~~ 486 (489)
T KOG0156|consen 425 LIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGGKVDMEEA-GLTLKKKKPLKAVPVP 486 (489)
T ss_pred ecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCCCCCCccc-ccceecCCcceeeeec
Confidence 9999999999999999999999999999999999998661 12222 2444444455544443
No 24
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=6.9e-36 Score=236.41 Aligned_cols=140 Identities=22% Similarity=0.395 Sum_probs=116.3
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCcccc-ccCCCc
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKA-AKNNEV 78 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~-~~~~~~ 78 (142)
|+|||+|+||++|+++. ++|.+.+|++++||.||||+.|+++.+++|+||++| +||++|+||||+++.... ......
T Consensus 389 l~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~ 467 (543)
T PLN02971 389 VKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVW-SDPLSFKPERHLNECSEVTLTENDL 467 (543)
T ss_pred HHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhC-CCccccCcccCCCCCccccccCCCC
Confidence 47999999999999987 789999999999999999999999999999999999 899999999999753221 111456
Q ss_pred cceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCC---CCCcceEeeeCCCeeEEEEEC
Q 042061 79 SFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAH---APSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 79 ~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~---~~~~~~~~~p~~~~~v~~~~r 142 (142)
.|+|||.|+|.|+|++||++|++++++.|+++|+|++.++... ....+ ++.-...+.+.+++|
T Consensus 468 ~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 468 RFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELR 533 (543)
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeec
Confidence 8999999999999999999999999999999999998754311 11223 442334778887776
No 25
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=6.6e-36 Score=233.36 Aligned_cols=135 Identities=21% Similarity=0.389 Sum_probs=119.6
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccc
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSF 80 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~ 80 (142)
|+|+|+|++|++|+++...|.+.+|++++|+.||+|+.|.++.+++|+|+++| +||++|+|+||++... .+..+
T Consensus 353 l~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeR~~~~~~-----~~~~~ 426 (490)
T PLN02302 353 LSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVY-PNPKEFDPSRWDNYTP-----KAGTF 426 (490)
T ss_pred HHHHHHHHHHhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHhcCCcccC-CCccccChhhcCCCCC-----CCCCc
Confidence 46899999999999988889999999999999999999999999999999999 8999999999996431 45789
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 81 FPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 81 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
+|||.|+|.|+|++||.+|++++++.++++|++++.++.. .........|.+++++++++|
T Consensus 427 ~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~ 487 (490)
T PLN02302 427 LPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGC-KVMYLPHPRPKDNCLARITKV 487 (490)
T ss_pred cCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCC-cceeCCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999999999875432 222233489999999999876
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=1.8e-35 Score=231.51 Aligned_cols=141 Identities=29% Similarity=0.582 Sum_probs=119.5
Q ss_pred CcchhhhhccCCCCCccc-eeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCcccc-ccCCCc
Q 042061 1 VGKIIYEVFRIYSPVSFI-FRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKA-AKNNEV 78 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~-~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~-~~~~~~ 78 (142)
|+|||+|+||++|+++.. .|.+.+|+.++|+.||+|+.|.++.+++|+||++| +||++|+||||+.++... ......
T Consensus 339 l~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeRwl~~~~~~~~~~~~~ 417 (489)
T PLN02936 339 LTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVW-ERAEEFVPERFDLDGPVPNETNTDF 417 (489)
T ss_pred HHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhC-CCccccCccccCCCCCCccccCCCc
Confidence 579999999999998864 45556777789999999999999999999999999 799999999999643211 111346
Q ss_pred cceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEEC
Q 042061 79 SFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 79 ~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
.++|||.|+|.|+|++||++|++++++.|+++|+++++++........++..|.++++|++++|
T Consensus 418 ~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 481 (489)
T PLN02936 418 RYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQDIVMTTGATIHTTNGLYMTVSRR 481 (489)
T ss_pred ceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCccceecceEEeeCCCeEEEEEee
Confidence 8999999999999999999999999999999999999876543333457788999999999986
No 27
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=2e-35 Score=232.54 Aligned_cols=141 Identities=27% Similarity=0.492 Sum_probs=117.9
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCcccc---ccCC
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKA---AKNN 76 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~---~~~~ 76 (142)
|+|+|+|+||++|+++. ++|.+.+|++++|+.||+|+.|.++.+++|+||++| +||++|+||||+++.... ....
T Consensus 359 l~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~-~dp~~F~PeRfl~~~~~~~~~~~~~ 437 (517)
T PLN02687 359 LQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQW-PDPLEFRPDRFLPGGEHAGVDVKGS 437 (517)
T ss_pred HHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccC-CCcccCCchhcCCCCCccccccCCC
Confidence 47899999999999986 789999999999999999999999999999999999 899999999999753211 1113
Q ss_pred CccceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCC---C--CcceEeeeCCCeeEEEEEC
Q 042061 77 EVSFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHA---P--SRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 77 ~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~---~--~~~~~~~p~~~~~v~~~~r 142 (142)
...++|||.|+|.|+|++||.+|++++++.|+++|++++.++.... . .......+..++++++++|
T Consensus 438 ~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 508 (517)
T PLN02687 438 DFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPR 508 (517)
T ss_pred ceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccC
Confidence 5679999999999999999999999999999999999987653211 1 1234455566788888876
No 28
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=3.6e-35 Score=231.91 Aligned_cols=140 Identities=20% Similarity=0.392 Sum_probs=117.5
Q ss_pred CcchhhhhccCCCCCccc-eeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccc----cC
Q 042061 1 VGKIIYEVFRIYSPVSFI-FRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAA----KN 75 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~-~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~----~~ 75 (142)
|+|+|+|+||++|+++.. .|.+.+|++++||.||+|+.|.++.+++|+||++| +||++|+||||++++.... ..
T Consensus 376 l~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~-~~p~~F~PeRfl~~~~~~~~~~~~~ 454 (534)
T PLN03018 376 LKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIW-KDPLVYEPERHLQGDGITKEVTLVE 454 (534)
T ss_pred HHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccC-CCccccCCccCCCCCCccccccccC
Confidence 478999999999999875 68999999999999999999999999999999999 8999999999997532111 11
Q ss_pred CCccceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCC-CCCC--CcceEeeeCCCeeEEEEEC
Q 042061 76 NEVSFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTY-AHAP--SRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 76 ~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~-~~~~--~~~~~~~p~~~~~v~~~~r 142 (142)
....++|||.|+|.|+|++||.+|++++++.|+++|++++.++. .... ..+.+. ..+++++++++|
T Consensus 455 ~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~-~p~~~~v~~~~R 523 (534)
T PLN03018 455 TEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFGPLSLEEDDASLL-MAKPLLLSVEPR 523 (534)
T ss_pred CCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCCCCCcccccccee-cCCCeEEEEEec
Confidence 35689999999999999999999999999999999999987653 2111 223334 456999999987
No 29
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=7.3e-35 Score=229.07 Aligned_cols=141 Identities=18% Similarity=0.364 Sum_probs=118.0
Q ss_pred CcchhhhhccCCCCCcc-ceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccc--c-ccCC
Q 042061 1 VGKIIYEVFRIYSPVSF-IFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSK--A-AKNN 76 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~--~-~~~~ 76 (142)
|+|+|+|++|++|+++. ++|.+.+|++++|+.||+||.|.++.+++|+||++| +||++|+|+||..+... . ....
T Consensus 358 l~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~-~dP~~F~PeRf~~~~~~~~~~~~~~ 436 (514)
T PLN03112 358 LRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIW-DDVEEFRPERHWPAEGSRVEISHGP 436 (514)
T ss_pred HHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccC-CChhhcCCcccCCCCCCccccccCC
Confidence 47899999999999986 689999999999999999999999999999999999 89999999997653211 1 1113
Q ss_pred CccceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCC-----CcceEeeeCCCeeEEEEEC
Q 042061 77 EVSFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAP-----SRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 77 ~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~v~~~~r 142 (142)
...++|||.|+|.|+|++||++|++++++.++++|++++.++..... ...+.+.+.+++++.+.+|
T Consensus 437 ~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 507 (514)
T PLN03112 437 DFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPR 507 (514)
T ss_pred CcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecC
Confidence 46899999999999999999999999999999999999875431111 1235556677999999987
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-34 Score=218.53 Aligned_cols=141 Identities=23% Similarity=0.512 Sum_probs=123.2
Q ss_pred CcchhhhhccCCCCCccceeeeccceeecC----EEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCcccc-ccC
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLGD----FILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKA-AKN 75 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~g----~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~-~~~ 75 (142)
|++||+|||||+||.+.+.|.+.+|.++.+ |.||+|..|.++...+|+||++| ++|+.|+|+||++++.+. +.+
T Consensus 336 L~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif-~dp~~Fk~dRf~~~~~~~~k~g 414 (486)
T KOG0684|consen 336 LDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIF-PDPEDFKPDRFLKDNGESKKNG 414 (486)
T ss_pred HHHHHHHHHhcCCchhhHHHhhccceeeccCCcceecCCCCEEEeccccccCCcccc-CChhhCChhhccCCCccccccc
Confidence 578999999999999999999999999976 99999999999999999999999 999999999999876544 222
Q ss_pred --CCccceeccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCC-CCCCCcceEeeeCCCeeEEEEEC
Q 042061 76 --NEVSFFPFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTY-AHAPSRGITVYPQHGAHMILNKL 142 (142)
Q Consensus 76 --~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~r 142 (142)
-++.+||||+|.|.|||+.||.+|++.++..+|++|++++.+++ +.......+..|.++++++.++|
T Consensus 415 ~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~d~s~~v~~P~g~v~irYK~R 484 (486)
T KOG0684|consen 415 EKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEVDYSRMVMQPEGDVRIRYKRR 484 (486)
T ss_pred ccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCCCCCCCHHHhhcCCCCCceEEEeec
Confidence 34556999999999999999999999999999999999998853 22223456889999999999876
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=6.8e-32 Score=207.50 Aligned_cols=127 Identities=32% Similarity=0.654 Sum_probs=113.1
Q ss_pred cchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCCCccce
Q 042061 2 GKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNNEVSFF 81 (142)
Q Consensus 2 ~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~~~~~~ 81 (142)
+++++|+||++|+++.+.|.+++|++++|+.||+|+.|+++++++||||+.| ++|++|+|+||. ..++
T Consensus 283 ~~~v~E~LR~~ppv~~~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f-~~P~~F~p~R~~-----------~~~l 350 (411)
T COG2124 283 EAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVF-PDPDEFDPERFN-----------NAHL 350 (411)
T ss_pred HHHHHHHHHhCCchhccceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhC-CChhhcCCCCCC-----------CCCc
Confidence 4899999999999999889999999999999999999999999999999999 899999999985 6699
Q ss_pred eccCCCCCChhHHHHHHHHHHHHHHHHhcceEEeCCCCCCCCCcceEeeeCCCeeEEEEE
Q 042061 82 PFGGGPRICIGQNFALMEVKLALAMILQNFSFQLSPTYAHAPSRGITVYPQHGAHMILNK 141 (142)
Q Consensus 82 ~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 141 (142)
+||+|.|.|+|..||++|++++++.++++|++....+ ........+..|..+..+.++.
T Consensus 351 ~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~-~~~~~~~~~~~~~g~~~l~v~~ 409 (411)
T COG2124 351 PFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE-PPPLVRRPTLVPRGGERLPVRR 409 (411)
T ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC-CCCccccccccCCCcceeeeec
Confidence 9999999999999999999999999999999887665 2333445567777777777764
No 32
>PLN02648 allene oxide synthase
Probab=99.96 E-value=1.3e-29 Score=197.94 Aligned_cols=115 Identities=24% Similarity=0.466 Sum_probs=99.9
Q ss_pred CcchhhhhccCCCCCccceeeeccceeec----CEEeCCCCEEEEceeccccCCCCcCCCCCCccCCCCCCCccccccCC
Q 042061 1 VGKIIYEVFRIYSPVSFIFRTNVEETKLG----DFILPPGVLLSLPIILVHHDHEYWGDDAKVFNPDRFSEGVSKAAKNN 76 (142)
Q Consensus 1 l~~~i~E~lRl~p~~~~~~r~~~~d~~i~----g~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p~R~~~~~~~~~~~~ 76 (142)
|+++|+|+||++|+++.+.|.+.+|++++ ||.||+|+.|+++.+.+|+||++| +||++|+|+||+++... .
T Consensus 336 l~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~-~dP~~F~PeRf~~~~~~----~ 410 (480)
T PLN02648 336 VKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVF-DRPEEFVPDRFMGEEGE----K 410 (480)
T ss_pred HHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccC-CCcceeCCCCCCCCCcc----c
Confidence 47899999999999998889999999996 799999999999999999999999 99999999999864321 1
Q ss_pred Cccceec---------cCCCCCChhHHHHHHHHHHHHHHHHhcce-EEeCCCCC
Q 042061 77 EVSFFPF---------GGGPRICIGQNFALMEVKLALAMILQNFS-FQLSPTYA 120 (142)
Q Consensus 77 ~~~~~~F---------g~G~r~C~G~~~A~~~~~~~l~~ll~~~~-~~~~~~~~ 120 (142)
...+++| |.|+|.|+|++||.+|++++++.|+++|+ +++.++..
T Consensus 411 ~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~~ 464 (480)
T PLN02648 411 LLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDTS 464 (480)
T ss_pred cccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCcc
Confidence 2234444 66779999999999999999999999998 99876643
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=87.68 E-value=0.57 Score=33.06 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=27.3
Q ss_pred cchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEE
Q 042061 2 GKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSL 41 (142)
Q Consensus 2 ~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~ 41 (142)
.|||.|+.-+... ..+.=...+|+.++|..||+||.+.-
T Consensus 56 ~A~V~~~qtv~~G-s~vrlRLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 56 RAVVDGTQTVVDG-SRVRLRLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred EEEEecceEEeCC-CEEEEEEcCceEECCEEeCCCCEEEE
Confidence 4777888755432 22322457999999999999997654
No 34
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=77.00 E-value=2.4 Score=33.20 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=27.2
Q ss_pred cchhhhhccCCCCCccceeeeccceeecCEEeCCCCEEEE
Q 042061 2 GKIIYEVFRIYSPVSFIFRTNVEETKLGDFILPPGVLLSL 41 (142)
Q Consensus 2 ~~~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ip~g~~v~~ 41 (142)
.|||.|+.-+.-. ..+.=...+|+.++|..||+||.|.-
T Consensus 259 ~A~V~~~qtv~~G-~~vrlRLle~~~v~~~~ipkgt~l~g 297 (410)
T TIGR03779 259 RACVHETQTVVDG-SAVKLRLLEPIQAGDLVIPKGTVLYG 297 (410)
T ss_pred EEEEcCceEEecC-CEEEEEEcCceeeCCEEecCCCEEEE
Confidence 5777777765431 22322457999999999999997654
No 35
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=75.10 E-value=6.5 Score=26.33 Aligned_cols=41 Identities=20% Similarity=0.472 Sum_probs=29.9
Q ss_pred eccceeecCEEeCCCCEEEEcee-------ccccCCCCcCCCCCCccCCC
Q 042061 22 NVEETKLGDFILPPGVLLSLPII-------LVHHDHEYWGDDAKVFNPDR 64 (142)
Q Consensus 22 ~~~d~~i~g~~ip~g~~v~~~~~-------~~~~d~~~~g~~p~~f~p~R 64 (142)
..+|+.++|..||+|+.-+..+. .+|.+...||. ..++|+.
T Consensus 52 f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~--~~Y~~~~ 99 (145)
T PF11138_consen 52 FSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA--YNYDPSK 99 (145)
T ss_pred ECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc--cccCchh
Confidence 46899999999999998766543 36777788863 4555543
No 36
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=70.99 E-value=1.7 Score=24.43 Aligned_cols=8 Identities=25% Similarity=0.713 Sum_probs=6.4
Q ss_pred cCCCCCCC
Q 042061 61 NPDRFSEG 68 (142)
Q Consensus 61 ~p~R~~~~ 68 (142)
||||||..
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 78999864
No 37
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=65.46 E-value=5.8 Score=26.31 Aligned_cols=22 Identities=14% Similarity=0.551 Sum_probs=16.4
Q ss_pred CChhHHHHHHHHHHHHHHHHhc
Q 042061 89 ICIGQNFALMEVKLALAMILQN 110 (142)
Q Consensus 89 ~C~G~~~A~~~~~~~l~~ll~~ 110 (142)
.|.|+.||..++..++..++..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999874
No 38
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=59.45 E-value=7 Score=23.64 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcceEEeCCC
Q 042061 98 MEVKLALAMILQNFSFQLSPT 118 (142)
Q Consensus 98 ~~~~~~l~~ll~~~~~~~~~~ 118 (142)
.-|+-++.++|+-|||.+++-
T Consensus 60 ~~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHHhccCCceeeec
Confidence 457788999999999999864
No 39
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=54.16 E-value=9.3 Score=24.80 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=22.2
Q ss_pred eeccceeecCEEeCCCCEEEEceeccccCCCCc
Q 042061 21 TNVEETKLGDFILPPGVLLSLPIILVHHDHEYW 53 (142)
Q Consensus 21 ~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~ 53 (142)
++.+|..++|-.||+|++++.-- ..|+++|
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~~k---~~ddelW 101 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVGVK---ITDDELW 101 (122)
T ss_pred ecCCCcccCCeeecceEEEEEEE---ecCHHHH
Confidence 45678999999999999986532 2455677
No 40
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=43.15 E-value=11 Score=20.81 Aligned_cols=10 Identities=50% Similarity=1.032 Sum_probs=8.5
Q ss_pred eccCCCCCCh
Q 042061 82 PFGGGPRICI 91 (142)
Q Consensus 82 ~Fg~G~r~C~ 91 (142)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6899999886
No 41
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=42.38 E-value=10 Score=26.26 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCccCCCCCCCccccccCCCccceeccCCCCCChhHH
Q 042061 58 KVFNPDRFSEGVSKAAKNNEVSFFPFGGGPRICIGQN 94 (142)
Q Consensus 58 ~~f~p~R~~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 94 (142)
.+|+|++|=.--... ..++...+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl-~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRL-EEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEe-cCCcceEEEEecCcEEEeccC
Confidence 357777773211111 115778999999999999864
No 42
>PRK06789 flagellar motor switch protein; Validated
Probab=36.58 E-value=43 Score=19.70 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=27.9
Q ss_pred hhhhhccCCCCCcc-ceeeeccc--eeecCEEeCCCCEEEEc
Q 042061 4 IIYEVFRIYSPVSF-IFRTNVEE--TKLGDFILPPGVLLSLP 42 (142)
Q Consensus 4 ~i~E~lRl~p~~~~-~~r~~~~d--~~i~g~~ip~g~~v~~~ 42 (142)
-++|.+.|.+..-. +-+.+.++ +.++|..|.+|..|.++
T Consensus 21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~ 62 (74)
T PRK06789 21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN 62 (74)
T ss_pred EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence 46788888875443 55666554 45589999999988775
No 43
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=32.81 E-value=38 Score=16.33 Aligned_cols=16 Identities=25% Similarity=0.760 Sum_probs=12.2
Q ss_pred CCccceeccCCCCCCh
Q 042061 76 NEVSFFPFGGGPRICI 91 (142)
Q Consensus 76 ~~~~~~~Fg~G~r~C~ 91 (142)
....|+++.+..|.|.
T Consensus 16 ~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 16 RDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCcEeCCCCccccCc
Confidence 3577999997778884
No 44
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=32.01 E-value=16 Score=25.14 Aligned_cols=35 Identities=26% Similarity=0.588 Sum_probs=23.5
Q ss_pred CCccCCCCCCCccccccCCCccceeccCCCCCChhH
Q 042061 58 KVFNPDRFSEGVSKAAKNNEVSFFPFGGGPRICIGQ 93 (142)
Q Consensus 58 ~~f~p~R~~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 93 (142)
.+|+|+||-.---.. ..++-..+-|+.|+=.|.|.
T Consensus 29 ~eY~P~~fpgli~Rl-~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRL-EDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEc-cCCcEEEEEECCCeEEEEcc
Confidence 468888874321111 11567789999999999986
No 45
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=31.96 E-value=25 Score=24.77 Aligned_cols=35 Identities=23% Similarity=0.553 Sum_probs=22.9
Q ss_pred CCccCCCCCCCccccccCCCccceeccCCCCCChhH
Q 042061 58 KVFNPDRFSEGVSKAAKNNEVSFFPFGGGPRICIGQ 93 (142)
Q Consensus 58 ~~f~p~R~~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 93 (142)
.+|+|.||-.-- ...+++...-+-|+.|+=.|-|.
T Consensus 50 ~ey~Pk~~~aVi-mrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 50 AEYNPKRFAAVI-MRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred cccCcccccEEE-EEEcCCceEEEEecCCcEEEecc
Confidence 468899874311 11222456678899999999963
No 46
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=31.65 E-value=31 Score=24.68 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=16.1
Q ss_pred cccCCCCcCCCCCCccCCC
Q 042061 46 VHHDHEYWGDDAKVFNPDR 64 (142)
Q Consensus 46 ~~~d~~~~g~~p~~f~p~R 64 (142)
-|.|+.+| .|.+.|+|.|
T Consensus 194 ~n~~~~FY-~d~~~FRp~R 211 (212)
T PF11227_consen 194 DNEDPAFY-DDTDVFRPGR 211 (212)
T ss_pred CCCCcccc-cCccccCCCC
Confidence 48899999 8999999987
No 47
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=31.48 E-value=21 Score=17.01 Aligned_cols=6 Identities=50% Similarity=1.348 Sum_probs=3.1
Q ss_pred ccCCCC
Q 042061 60 FNPDRF 65 (142)
Q Consensus 60 f~p~R~ 65 (142)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 345554
No 48
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=26.84 E-value=72 Score=21.92 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=22.6
Q ss_pred CCccCCCCCCCccccccCCCccceeccCCCCCChhH
Q 042061 58 KVFNPDRFSEGVSKAAKNNEVSFFPFGGGPRICIGQ 93 (142)
Q Consensus 58 ~~f~p~R~~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 93 (142)
.+|+|++|-.---.. ..++-..+-|+.|+=.|.|.
T Consensus 29 ~~YePe~fpgli~R~-~~P~~t~lIf~sGKivitGa 63 (174)
T cd00652 29 AEYNPKRFPGVIMRL-REPKTTALIFSSGKMVITGA 63 (174)
T ss_pred cEECCCccceEEEEc-CCCcEEEEEECCCEEEEEec
Confidence 467777774311111 11566788999999999983
No 49
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=24.61 E-value=95 Score=19.99 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=15.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHh
Q 042061 88 RICIGQNFALMEVKLALAMILQ 109 (142)
Q Consensus 88 r~C~G~~~A~~~~~~~l~~ll~ 109 (142)
|.|||.-++......++..|-.
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHTS
T ss_pred CcCccHHHHHHHHHHHHHHcCC
Confidence 7899999998888877776643
No 50
>PRK00394 transcription factor; Reviewed
Probab=23.77 E-value=31 Score=23.91 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=22.7
Q ss_pred CCccCCCCCCCccccccCCCccceeccCCCCCChh
Q 042061 58 KVFNPDRFSEGVSKAAKNNEVSFFPFGGGPRICIG 92 (142)
Q Consensus 58 ~~f~p~R~~~~~~~~~~~~~~~~~~Fg~G~r~C~G 92 (142)
.+|+|+||-.---.. ..+.-..+-|..|+=.|.|
T Consensus 28 ~eYePe~fpgli~Rl-~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRL-EDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEe-cCCceEEEEEcCCcEEEEc
Confidence 467788774321111 1156778999999999998
No 51
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=23.02 E-value=1.2e+02 Score=22.25 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=25.3
Q ss_pred chhhhh--ccCCCCCcc-ceeeeccceeecC-EEeCCCCEEEE
Q 042061 3 KIIYEV--FRIYSPVSF-IFRTNVEETKLGD-FILPPGVLLSL 41 (142)
Q Consensus 3 ~~i~E~--lRl~p~~~~-~~r~~~~d~~i~g-~~ip~g~~v~~ 41 (142)
+.+.|+ -||.|+-.+ +.|+-+.|-.|+. +.+-.|+.|++
T Consensus 183 s~LEEtYYHrlnP~QGF~fQRVYTddrsLDEtmaV~~~dvvlV 225 (270)
T COG3718 183 SYLEETYYHRLNPPQGFAFQRVYTDDRSLDETMAVENGDVVLV 225 (270)
T ss_pred hhhhhhhhhccCccccceEEEEEcCCCcccceeeeecCCEEEe
Confidence 456677 699998765 6677778766652 44455555544
No 52
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=22.62 E-value=38 Score=18.67 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=10.0
Q ss_pred eccCCCCCCh--hHH
Q 042061 82 PFGGGPRICI--GQN 94 (142)
Q Consensus 82 ~Fg~G~r~C~--G~~ 94 (142)
-||-|.|.|. |+.
T Consensus 11 ~yGkGsr~C~vCg~~ 25 (54)
T PTZ00218 11 TYGKGSRQCRVCSNR 25 (54)
T ss_pred cCCCCCCeeecCCCc
Confidence 4889999997 553
No 53
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=21.73 E-value=94 Score=21.86 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=24.9
Q ss_pred EEeCCCCEEEEceeccccCCCCcCCCCCCccC-CCCCCCcc
Q 042061 31 FILPPGVLLSLPIILVHHDHEYWGDDAKVFNP-DRFSEGVS 70 (142)
Q Consensus 31 ~~ip~g~~v~~~~~~~~~d~~~~g~~p~~f~p-~R~~~~~~ 70 (142)
++|...+-|..+++.. ..++| -+|+++.| +|||....
T Consensus 106 fsIK~~dgv~assfk~--g~k~f-i~p~KllPl~RFLP~p~ 143 (215)
T KOG3262|consen 106 FSIKPSDGVQASSFKP--GDKLF-IDPDKLLPLDRFLPQPV 143 (215)
T ss_pred EEEecCCCceeecccC--CCeEE-ecccccCcHhhcCCCCC
Confidence 4666666666655543 35678 78999988 58997643
No 54
>PLN00062 TATA-box-binding protein; Provisional
Probab=20.88 E-value=33 Score=23.80 Aligned_cols=35 Identities=23% Similarity=0.600 Sum_probs=22.9
Q ss_pred CCccCCCCCCCccccccCCCccceeccCCCCCChhH
Q 042061 58 KVFNPDRFSEGVSKAAKNNEVSFFPFGGGPRICIGQ 93 (142)
Q Consensus 58 ~~f~p~R~~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 93 (142)
.+|+|++|=.---.. ..++-..+-|+.|+=.|-|.
T Consensus 29 ~eYePe~fpgli~Rl-~~Pk~t~lIF~SGKiviTGa 63 (179)
T PLN00062 29 AEYNPKRFAAVIMRI-REPKTTALIFASGKMVCTGA 63 (179)
T ss_pred CEECCccCcEEEEEe-CCCcEEEEEECCCeEEEEec
Confidence 467888773211111 11456789999999999985
Done!