BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042062
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 3 ALRQQIAEMRQSFFDEEILDRYFIQLEQLGENN--PGFVEDVLTVYFRDSTRTLANIEKE 60
ALR+Q+ + S F ++D F QL+ L E+ PGFV +V+T++ D+ R ++ +
Sbjct: 5 ALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAAL 64
Query: 61 LQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEH 120
L + V++ ++D Y + LKGSSAS+GA KV+ + R+LC+ N + ++L ++ E
Sbjct: 65 LDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVVRNEF 124
Query: 121 STLKDKL 127
L++K
Sbjct: 125 YDLRNKF 131
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 3 ALRQQIAEMRQSFFDEEILDRYFIQLEQLGE--NNPGFVEDVLTVYFRDSTRTLANIEKE 60
ALR Q+ + S F + ++D F QL+ L + PGFV +V+T++ D+ R + I
Sbjct: 5 ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 61 LQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEH 120
L++ VN+ ++D Y + LKGSSAS+GA KV+ + R+ C+ + + ++L ++ +
Sbjct: 65 LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 124
Query: 121 STLKDKLTAYFELVAQL 137
L++K +L Q+
Sbjct: 125 YDLRNKFQTMLQLEQQI 141
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 13 QSFFDEEILDRYFIQLEQL-GENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVEL 71
+S F E ILD F+QL+QL E+NP FV V+T++F+DS R L ++ L + V++ ++
Sbjct: 20 KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 79
Query: 72 DRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYF 131
D + + LKGSS+SIGA +V+N R C N E L+Q+K E+ +K++L F
Sbjct: 80 DPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLF 139
Query: 132 ELVAQL 137
+L Q+
Sbjct: 140 KLEQQI 145
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 4 LRQQIAEMRQSFFDEEILD-RYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQ 62
+R+Q + +S F E LD ++ + ENNP FV +V++++F DS R L ++ +
Sbjct: 6 MRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVD 65
Query: 63 KTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHST 122
+ +++ ++D + + KGSSASIGA +V+N R C N + + L+Q+K E+
Sbjct: 66 QQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLL 125
Query: 123 LKDKLTAYFELVAQL 137
+K+KL L Q+
Sbjct: 126 VKNKLETLLRLEQQI 140
>pdb|2R25|A Chain A, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 167
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 43 LTVYFRDSTRT-LANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELC 101
L + F D +T A ++++L E N ELD + LKGSSA++G ++ + + L
Sbjct: 31 LIIQFIDQAQTTFAQMQRQLDG-EKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLG 89
Query: 102 R 102
R
Sbjct: 90 R 90
>pdb|1C03|A Chain A, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|B Chain B, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|C Chain C, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|D Chain D, Crystal Structure Of Ypd1p (Triclinic Form)
Length = 168
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 43 LTVYFRDSTRT-LANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELC 101
L + F D +T A ++++L E N ELD + LKGSSA++G ++ + + L
Sbjct: 31 LIIQFIDQAQTTFAQMQRQLDG-EKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLG 89
Query: 102 R 102
R
Sbjct: 90 R 90
>pdb|1C02|A Chain A, Crystal Structure Of Yeast Ypd1p
pdb|1C02|B Chain B, Crystal Structure Of Yeast Ypd1p
Length = 166
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 43 LTVYFRDSTRT-LANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELC 101
L + F D +T A ++++L E N ELD + LKGSSA++G ++ + + L
Sbjct: 30 LIIQFIDQAQTTFAQMQRQLDG-EKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLG 88
Query: 102 R 102
R
Sbjct: 89 R 89
>pdb|1QSP|A Chain A, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
pdb|1QSP|B Chain B, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
Length = 165
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 43 LTVYFRDSTRT-LANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELC 101
L + F D +T A ++++L E N ELD + LKGSSA++G ++ + + L
Sbjct: 29 LIIQFIDQAQTTFAQMQRQLDG-EKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLG 87
Query: 102 R 102
R
Sbjct: 88 R 88
>pdb|1OXB|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|C Chain C, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|E Chain E, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|G Chain G, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|I Chain I, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|K Chain K, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 166
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 43 LTVYFRDSTRT-LANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELC 101
L + F D +T A ++++L E N ELD + LKGSSA++G ++ + + L
Sbjct: 30 LIIQFIDQAQTTFAQMQRQLDG-EKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLG 88
Query: 102 R 102
R
Sbjct: 89 R 89
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 12 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 71
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L A+ E + +
Sbjct: 72 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQAHAERIDHI 117
>pdb|3E9S|A Chain A, A New Class Of Papain-Like ProteaseDEUBIQUITINASE
Inhibitors Blocks Sars Virus Replication
Length = 318
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 2 EALRQQIAEMRQSFFDEEILDRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKEL 61
+ LR + E + DE L RY L + V + ++ + D+ L+++ L
Sbjct: 65 DTLRSEAFEYYHTL-DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNXYLSSVLLAL 123
Query: 62 QKTEV--NYVELDRYFYNLK-GSSASIGA------NKVRNEVNKTRE----LCRAANWEE 108
Q+ EV N L +Y + G +A+ A NK E+ RE L + AN E
Sbjct: 124 QQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLES 183
Query: 109 AKVSLEQLKVEHSTLKDKLTAYFELVAQLGTDS 141
AK L + +H K E V +GT S
Sbjct: 184 AKRVL-NVVCKHCGQKTTTLTGVEAVMYMGTLS 215
>pdb|2FE8|A Chain A, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
pdb|2FE8|B Chain B, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
pdb|2FE8|C Chain C, Sars Coronavirus Papain-Like Protease: Structure Of A
Viral Deubiquitinating Enzyme
Length = 315
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 2 EALRQQIAEMRQSFFDEEILDRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKEL 61
+ LR + E + DE L RY L + V + ++ + D+ L+++ L
Sbjct: 63 DTLRSEAFEYYHTL-DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLAL 121
Query: 62 QKTEV--NYVELDRYFYNLK-GSSASIGA------NKVRNEVNKTRE----LCRAANWEE 108
Q+ EV N L +Y + G +A+ A NK E+ RE L + AN E
Sbjct: 122 QQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLES 181
Query: 109 AKVSLEQLKVEHSTLKDKLTAYFELVAQLGTDS 141
AK L + +H K E V +GT S
Sbjct: 182 AKRVL-NVVCKHCGQKTTTLTGVEAVMYMGTLS 213
>pdb|3MJ5|A Chain A, Severe Acute Respiratory Syndrome-Coronavirus Papain-Like
Protease Inhibitors: Design, Synthesis, Protein-Ligand
X-Ray Structure And Biological Evaluation
pdb|3MJ5|B Chain B, Severe Acute Respiratory Syndrome-Coronavirus Papain-Like
Protease Inhibitors: Design, Synthesis, Protein-Ligand
X-Ray Structure And Biological Evaluation
Length = 316
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 2 EALRQQIAEMRQSFFDEEILDRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKEL 61
+ LR + E + DE L RY L + V + ++ + D+ L+++ L
Sbjct: 63 DTLRSEAFEYYHTL-DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLAL 121
Query: 62 QKTEV--NYVELDRYFYNLK-GSSASIGA------NKVRNEVNKTRE----LCRAANWEE 108
Q+ EV N L +Y + G +A+ A NK E+ RE L + AN E
Sbjct: 122 QQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLES 181
Query: 109 AKVSLEQLKVEHSTLKDKLTAYFELVAQLGTDS 141
AK L + +H K E V +GT S
Sbjct: 182 AKRVL-NVVCKHCGQKTTTLTGVEAVMYMGTLS 213
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 48 RDSTRTLANIEKELQKTE---VNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAA 104
++ T+ +IE EL +++ +N+ +L S I + V E+NK +L
Sbjct: 12 KEVTKVKQSIEDELIRSDSQLMNFPQL---------PSNGIPQDDVIEELNKLNDLIPHT 62
Query: 105 NWEEAKVS 112
W+E KVS
Sbjct: 63 QWKEGKVS 70
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 48 RDSTRTLANIEKELQKTE---VNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAA 104
++ T+ +IE EL +++ +N+ +L S I + V E+NK +L
Sbjct: 12 KEVTKVKQSIEDELIRSDSQLMNFPQL---------PSNGIPQDDVIEELNKLNDLIPHT 62
Query: 105 NWEEAKVS 112
W+E KVS
Sbjct: 63 QWKEGKVS 70
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 14 SFFDEEILDRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDR 73
D + D Y + + + G+ V V F D T + + K L E R
Sbjct: 160 GLGDGIMADMYTLTIREAGQKTIS-VPVVHVGNFPDQTAVSSEVTKALASLVDQTAETKR 218
Query: 74 YFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKV 111
Y KGSSA +K+R ++ CRA A++
Sbjct: 219 NMYESKGSSAVADDSKLRPVIH-----CRAGVGRTAQL 251
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 14 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 73
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 74 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 119
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 15 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 74
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 75 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 120
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 16 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 75
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 76 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 121
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 12 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 71
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 72 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 117
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 99
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 100 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 145
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 68
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 69 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 114
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 27 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 86
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 87 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 132
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 68
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 69 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 114
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 27 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 86
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 87 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 132
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 68
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 69 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 114
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 13 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 72
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 73 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 118
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 7 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 66
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 67 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 112
>pdb|2Q5T|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae
pdb|3Q9O|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae In Complex
With Nad
Length = 642
Score = 26.2 bits (56), Expect = 6.7, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 28 LEQLGENNPGFVEDVLTV 45
L ++ ENNPG V VLTV
Sbjct: 351 LRRINENNPGMVTQVLTV 368
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 56 NIEKELQKTEVNYVELDRYFYN------LKGSSASIGANKVRNEVNKTRELCRAANWEEA 109
N+ KEL ++V+ + +Y YN +KG +++ G +N V R + + AN + +
Sbjct: 24 NLPKELF-SKVDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPS 82
Query: 110 KVSL 113
KVS
Sbjct: 83 KVSF 86
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 56 NIEKELQKTEVNYVELDRYFYN------LKGSSASIGANKVRNEVNKTRELCRAANWEEA 109
N+ KEL ++V+ + +Y YN +KG +++ G +N V R + + AN + +
Sbjct: 24 NLPKELF-SKVDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPS 82
Query: 110 KVSL 113
KVS
Sbjct: 83 KVSF 86
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 10 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 69
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 70 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 115
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 23 RYFIQLEQLGENNPGF---VEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLK 79
R +I L L F V D +V ++ RTL + + +++ V D ++
Sbjct: 211 RIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270
Query: 80 GSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDK 126
++ V E ++TR+L ++ ++ + + +E LK+
Sbjct: 271 KIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEP 317
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 22 DRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGS 81
+R+ L+QLG+ N G VE +D+T + ++K TE + + +R LK
Sbjct: 8 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL 67
Query: 82 SASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137
+ + K + +C +A K+ +E L + +L+D L + E + +
Sbjct: 68 Q--------HDNIVKYKGVCYSAGRRNLKLIMEYLP--YGSLRDYLQKHKERIDHI 113
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 23 RYFIQLEQLGENNPGF---VEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLK 79
R +I L L F V D V ++ RTL + + +++ V D ++
Sbjct: 178 RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 237
Query: 80 GSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDK 126
++ V E ++TR+L + ++ + + +E LK+
Sbjct: 238 KIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEP 284
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 23 RYFIQLEQLGENNPGF---VEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLK 79
R +I L L F V D V ++ RTL + + +++ V D ++
Sbjct: 187 RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 246
Query: 80 GSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDK 126
++ V E ++TR+L + ++ + + +E LK+
Sbjct: 247 KIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEP 293
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 23 RYFIQLEQLGENNPGF---VEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLK 79
R +I L L F V D V ++ RTL + + +++ V D ++
Sbjct: 196 RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 255
Query: 80 GSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDK 126
++ V E ++TR+L + ++ + + +E LK+
Sbjct: 256 KIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEP 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,894,715
Number of Sequences: 62578
Number of extensions: 143052
Number of successful extensions: 602
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 53
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)