Query 042062
Match_columns 142
No_of_seqs 178 out of 635
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 4.2E-37 1.4E-41 223.4 15.7 140 2-141 4-144 (153)
2 1yvi_A Histidine-containing ph 100.0 9.6E-36 3.3E-40 215.2 15.9 140 2-141 4-145 (149)
3 2r25_A Phosphorelay intermedia 99.9 3.2E-27 1.1E-31 172.7 12.3 116 14-132 2-164 (167)
4 2a0b_A HPT domain; sensory tra 99.9 5.9E-23 2E-27 143.5 10.3 115 15-133 6-121 (125)
5 3myf_A Sensor protein; HPT, hi 99.9 1E-20 3.5E-25 131.7 12.5 114 16-133 1-115 (119)
6 3iqt_A Signal transduction his 99.8 9.5E-20 3.3E-24 127.5 10.2 110 18-131 12-122 (123)
7 1y6d_A Phosphorelay protein LU 99.8 3.3E-20 1.1E-24 129.3 0.1 110 17-130 8-118 (120)
8 2ooc_A Histidine phosphotransf 99.8 1.1E-18 3.9E-23 120.3 6.7 102 18-133 8-109 (113)
9 1sr2_A Putative sensor-like hi 99.7 1.8E-17 6.1E-22 114.9 8.1 87 35-123 29-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.6 1.7E-15 5.7E-20 102.5 7.9 89 39-129 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.5 3.5E-14 1.2E-18 100.9 5.8 89 40-130 3-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 1.6E-13 5.5E-18 98.2 6.9 89 40-128 6-103 (146)
13 2lch_A Protein OR38; structura 99.4 2.3E-13 7.9E-18 93.2 6.2 89 40-128 5-102 (113)
14 3kyj_A CHEA3, putative histidi 99.2 8.3E-11 2.8E-15 84.0 7.4 92 39-130 9-109 (144)
15 2lp4_A Chemotaxis protein CHEA 98.8 1.3E-08 4.4E-13 77.2 7.9 86 40-125 6-100 (225)
16 3ls0_A SLL1638 protein, PSBQ; 91.7 2.3 7.9E-05 29.4 9.5 82 43-133 25-128 (133)
17 3zsu_A TLL2057 protein, cyanoq 89.8 2.2 7.5E-05 29.4 7.9 85 43-136 23-128 (130)
18 1vyk_A Oxygen-evolving enhance 87.0 6.1 0.00021 27.7 10.0 77 47-125 52-146 (149)
19 1gp8_A Protein (scaffolding pr 78.4 2.9 9.9E-05 22.7 3.3 23 56-80 16-38 (40)
20 2vs0_A Virulence factor ESXA; 73.1 13 0.00046 22.7 7.1 70 66-136 6-78 (97)
21 2cw9_A Translocase of inner mi 70.2 4.8 0.00016 29.1 4.0 59 10-76 27-86 (194)
22 3zbh_A ESXA; unknown function, 69.4 17 0.00058 22.3 6.4 20 66-85 9-28 (99)
23 4igg_A Catenin alpha-1; asymme 69.2 49 0.0017 29.3 10.8 84 37-123 304-413 (832)
24 3gwk_C SAG1039, putative uncha 69.0 18 0.00061 22.4 6.9 70 66-136 8-80 (98)
25 3hho_A CO-chaperone protein HS 63.0 32 0.0011 24.2 7.1 65 55-130 103-168 (174)
26 4ioe_A Secreted protein ESXB; 62.4 12 0.00041 22.9 4.3 71 66-137 9-82 (93)
27 1fpo_A HSC20, chaperone protei 62.0 25 0.00085 24.8 6.3 54 67-129 110-163 (171)
28 2p1h_A APAF-1, apoptotic prote 61.9 13 0.00045 23.2 4.4 65 9-76 25-90 (94)
29 2di0_A Activating signal coint 60.5 11 0.00037 23.1 3.6 40 19-58 11-51 (71)
30 1wjt_A Transcription elongatio 55.4 7.7 0.00026 25.4 2.4 31 87-117 11-41 (103)
31 3bvo_A CO-chaperone protein HS 55.3 47 0.0016 24.1 7.0 33 95-128 169-201 (207)
32 3uo3_A J-type CO-chaperone JAC 55.3 53 0.0018 23.3 7.2 40 88-128 132-171 (181)
33 3zym_A Phosphatidylinositol-bi 52.0 80 0.0027 24.4 9.0 90 38-131 207-300 (310)
34 2f4m_B UV excision repair prot 50.2 13 0.00044 22.1 2.6 35 24-58 12-46 (61)
35 2kjg_A Archaeal protein SSO690 46.5 20 0.00068 23.0 3.2 33 19-51 2-36 (99)
36 3qk9_A Mitochondrial import in 42.0 19 0.00065 26.7 3.0 46 26-76 63-109 (222)
37 3fav_B ESAT-6, 6 kDa early sec 38.3 48 0.0017 20.1 4.2 26 108-133 49-74 (94)
38 1pve_A HHR23B, UV excision rep 37.7 11 0.00038 23.1 1.0 35 24-58 14-48 (72)
39 3err_A Fusion protein of micro 37.0 1.6E+02 0.0055 24.5 8.2 86 36-131 118-207 (536)
40 1txp_A HnRNP C, heterogeneous 33.9 47 0.0016 16.4 3.2 24 114-137 2-25 (28)
41 3do9_A UPF0302 protein BA_1542 33.0 1E+02 0.0034 22.2 5.6 30 51-82 152-181 (188)
42 3ygs_P Procaspase 9; apoptosis 31.5 37 0.0013 21.4 2.8 69 4-74 10-89 (97)
43 3swf_A CGMP-gated cation chann 30.8 94 0.0032 19.0 6.6 47 86-137 1-48 (74)
44 2gyq_A YCFI, putative structur 29.7 74 0.0025 22.4 4.4 52 11-63 17-71 (173)
45 2wm9_A Dedicator of cytokinesi 29.7 2.2E+02 0.0074 22.8 8.6 91 43-138 307-397 (428)
46 3fkr_A L-2-keto-3-deoxyarabona 27.6 89 0.003 23.9 4.9 42 79-120 210-251 (309)
47 1oeg_A Apolipoprotein E; siali 26.7 14 0.00047 18.2 0.0 16 2-17 4-19 (26)
48 1h2v_C 80 kDa nuclear CAP bind 26.4 3.2E+02 0.011 23.8 10.8 100 25-133 67-186 (771)
49 3m50_P N.plumbaginifolia H+-tr 25.6 13 0.00046 19.0 -0.1 9 73-81 2-10 (31)
50 1x59_A Histidyl-tRNA synthetas 25.0 1.2E+02 0.004 18.2 4.9 19 80-98 1-19 (73)
51 3ggo_A Prephenate dehydrogenas 23.2 1.1E+02 0.0036 23.3 4.6 23 51-75 281-303 (314)
52 3vhl_A Dedicator of cytokinesi 22.8 2.5E+02 0.0086 21.3 10.1 91 43-138 167-257 (288)
53 2qsf_X RAD23, UV excision repa 22.2 53 0.0018 23.4 2.4 35 24-58 34-68 (171)
54 4fla_A Regulation of nuclear P 22.1 2E+02 0.0068 19.8 9.7 21 2-22 42-62 (152)
55 2xus_A Breast cancer metastasi 21.9 1.2E+02 0.004 17.1 4.9 30 108-137 10-41 (49)
56 4i0x_B ESAT-6-like protein MAB 21.7 1.5E+02 0.0052 18.3 5.8 20 66-85 11-30 (103)
57 3f0n_A Mevalonate pyrophosphat 21.3 1.3E+02 0.0046 24.2 4.9 31 42-74 238-269 (414)
58 3dyj_A Talin-1; helix bundles, 20.5 2.1E+02 0.0073 22.4 5.8 36 68-103 91-139 (332)
59 2p06_A Hypothetical protein AF 20.1 1.7E+02 0.0059 18.4 4.2 29 41-75 60-88 (114)
60 3dz1_A Dihydrodipicolinate syn 20.0 98 0.0034 23.6 3.8 41 80-120 212-252 (313)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=4.2e-37 Score=223.41 Aligned_cols=140 Identities=34% Similarity=0.557 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHhccCcchhhHHHHHHhhc-CCCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhc
Q 042062 2 EALRQQIAEMRQSFFDEEILDRYFIQLEQL-GENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKG 80 (142)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~lD~~l~~L~~l-~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 80 (142)
.+|++|+.+++++++++|+||.+|++|++| ++++|+|+.++|..|++++++.+..|..+++++++|++.+.++||+|||
T Consensus 4 ~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 83 (153)
T 3us6_A 4 GQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKG 83 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 579999999999999999999669999999 8899999999999999999999999999999877799999999999999
Q ss_pred cccccChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 042062 81 SSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQLGTDS 141 (142)
Q Consensus 81 ss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~~~ 141 (142)
||+|+||.+|+.+|..||.+|+.++.+++...+.+|+.+|.+++.+|++|+++|||+.++|
T Consensus 84 ss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~~ 144 (153)
T 3us6_A 84 SSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAG 144 (153)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999887
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=100.00 E-value=9.6e-36 Score=215.15 Aligned_cols=140 Identities=31% Similarity=0.558 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHhccCcchhhHHHHHHhhc-CCCC-hhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhh
Q 042062 2 EALRQQIAEMRQSFFDEEILDRYFIQLEQL-GENN-PGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLK 79 (142)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~lD~~l~~L~~l-~~~~-~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 79 (142)
++|++|+..+++|++++|+||++|++|++| ++++ |+|+.+||..|++++++.+..|..+++++++|+..++.++|+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LK 83 (149)
T 1yvi_A 4 AALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLK 83 (149)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 589999999999999999999999999999 8888 99999999999999999999999999987568999999999999
Q ss_pred ccccccChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 042062 80 GSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQLGTDS 141 (142)
Q Consensus 80 Gss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~~~ 141 (142)
|||+||||.+|+.+|..+|..++.++.+++...+.+++.+|..++.+|++|+++|||++++|
T Consensus 84 Gssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~~ 145 (149)
T 1yvi_A 84 GSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAYD 145 (149)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999876
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.95 E-value=3.2e-27 Score=172.74 Aligned_cols=116 Identities=22% Similarity=0.381 Sum_probs=109.0
Q ss_pred hccCcchhhHH-HHHHhhc-CCCChhhHHHHHHHHHHcHHHHHHHHHHHHh-cCccCHHHHHHHHhHhhccccccChHHH
Q 042062 14 SFFDEEILDRY-FIQLEQL-GENNPGFVEDVLTVYFRDSTRTLANIEKELQ-KTEVNYVELDRYFYNLKGSSASIGANKV 90 (142)
Q Consensus 14 ~~~~~~~lD~~-l~~L~~l-~~~~~~~~~eli~~F~~d~~~~l~~L~~al~-~~~~D~~~l~~~aH~LKGss~~lGA~~L 90 (142)
||..+|+||.. |++|++| +++ |+|+.+||..|++|+++.+..|+.|++ .+ |+..++.+||+|||||+||||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence 57788999997 9999999 555 999999999999999999999999999 77 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC------------HH--------------------------------HHHHHHHHHHHHHHHHHHH
Q 042062 91 RNEVNKTRELCRAAN------------WE--------------------------------EAKVSLEQLKVEHSTLKDK 126 (142)
Q Consensus 91 ~~~c~~LE~~~~~~~------------~~--------------------------------~~~~~~~~l~~~~~~~~~~ 126 (142)
..+|..+|.+|+.++ .+ .|...+.+++.+|..++.+
T Consensus 79 ~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~ 158 (167)
T 2r25_A 79 AWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIE 158 (167)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 33 7889999999999999999
Q ss_pred HHHHHH
Q 042062 127 LTAYFE 132 (142)
Q Consensus 127 L~~~l~ 132 (142)
|+.|++
T Consensus 159 L~~~~~ 164 (167)
T 2r25_A 159 LSKYYN 164 (167)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 999975
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.89 E-value=5.9e-23 Score=143.51 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=107.5
Q ss_pred ccCcchhhHH-HHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHH
Q 042062 15 FFDEEILDRY-FIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNE 93 (142)
Q Consensus 15 ~~~~~~lD~~-l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~ 93 (142)
+...++||.. |.+|+++ .+++++.+++..|++++++.+..|..++..+ |+..+.+.||+|||||+|+|+..|+.+
T Consensus 6 ~~~~~~lD~~~l~~l~~~--~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~~ 81 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLEL--VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQL 81 (125)
T ss_dssp CHHHHHSCHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCCHHHHHHHHHH--hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4456789999 9999988 3458999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 94 VNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFEL 133 (142)
Q Consensus 94 c~~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 133 (142)
|..+|..++.++.+++...+.+|..+|.++...|..|+..
T Consensus 82 ~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 121 (125)
T 2a0b_A 82 GQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 121 (125)
T ss_dssp HHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998875
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.85 E-value=1e-20 Score=131.69 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=101.5
Q ss_pred cCcchhhHHHHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHH
Q 042062 16 FDEEILDRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVN 95 (142)
Q Consensus 16 ~~~~~lD~~l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~ 95 (142)
|+..++|++ .+..+..|+++++.+|+..|+++.|+.+..|+.+++.+ ||+.+.+++|+|||+|+++|+++|..+|.
T Consensus 1 ~~~~~~D~~--~~l~~~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~ 76 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLCQ 76 (119)
T ss_dssp -CTTTCCHH--HHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCccccCHH--HHHHHhCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 456678876 33344568899999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 96 KTRELCRAAN-WEEAKVSLEQLKVEHSTLKDKLTAYFEL 133 (142)
Q Consensus 96 ~LE~~~~~~~-~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 133 (142)
.||..++.|. .+.+...+..+..++..+..+++.|+..
T Consensus 77 ~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 77 EIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999986 4677888899999999999999999874
No 6
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.81 E-value=9.5e-20 Score=127.54 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=98.0
Q ss_pred cchhhHHHHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHHHH
Q 042062 18 EEILDRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKT 97 (142)
Q Consensus 18 ~~~lD~~l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~L 97 (142)
.+++|++ .+..+..|+++++.+|+..|+++.++.+..|+.++..+ ||+.+.+++|+|||+|+++|+++|..+|..|
T Consensus 12 ~~~~D~~--~~l~~a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~L 87 (123)
T 3iqt_A 12 NATLDWQ--LALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQLI 87 (123)
T ss_dssp GGTCCHH--HHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CCccCHH--HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4567765 44455668899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 98 RELCRAANW-EEAKVSLEQLKVEHSTLKDKLTAYF 131 (142)
Q Consensus 98 E~~~~~~~~-~~~~~~~~~l~~~~~~~~~~L~~~l 131 (142)
|..++.|+. +.+...+..|..++..+..+.+.|+
T Consensus 88 E~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 88 EQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999865 3677888889999999988888775
No 7
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.76 E-value=3.3e-20 Score=129.29 Aligned_cols=110 Identities=14% Similarity=0.212 Sum_probs=88.1
Q ss_pred CcchhhHH-HHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHH
Q 042062 17 DEEILDRY-FIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVN 95 (142)
Q Consensus 17 ~~~~lD~~-l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~ 95 (142)
+.+.+|.. +.+|+.. .+|+++.+++..|++++++.+..|..+...+ |+..+.+.+|+|||||+|+|+.+|+.+|.
T Consensus 8 ~~~~~d~~~l~~L~~~--~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~ 83 (120)
T 1y6d_A 8 NTDVLNQQKIEELSAE--IGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAI 83 (120)
T ss_dssp CCTTTTTTHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred CCccccHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHH
Confidence 45677877 7777755 4458999999999999999999999988777 88999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 96 KTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAY 130 (142)
Q Consensus 96 ~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 130 (142)
.+|..+|.|+...+......+...+.+....+..+
T Consensus 84 ~lE~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 84 AIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999877643334444444444444544443
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.76 E-value=1.1e-18 Score=120.30 Aligned_cols=102 Identities=11% Similarity=0.108 Sum_probs=86.7
Q ss_pred cchhhHHHHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHHHH
Q 042062 18 EEILDRYFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKT 97 (142)
Q Consensus 18 ~~~lD~~l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~L 97 (142)
.+.+|.+ .|..++.++|+|+.+|+..|++++++.+..|..+ .. || +++||+|||||+||||.+|..+|..+
T Consensus 8 ~~~iD~~--~L~~~~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~l 78 (113)
T 2ooc_A 8 SGAVDFA--YLEGFAAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCERC 78 (113)
T ss_dssp -CCSCHH--HHHHHTTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCcCHH--HHHhHhCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4567766 3444566889999999999999999999999988 44 76 79999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 98 RELCRAANWEEAKVSLEQLKVEHSTLKDKLTAYFEL 133 (142)
Q Consensus 98 E~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 133 (142)
|..++. ....+..|+.++..+...|..+++.
T Consensus 79 E~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~ 109 (113)
T 2ooc_A 79 EAGQES-----LEGVRTALDAALLDIAAYAHEQALR 109 (113)
T ss_dssp HTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998877 4667888999999999998887753
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.72 E-value=1.8e-17 Score=114.87 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=80.3
Q ss_pred ChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 042062 35 NPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLE 114 (142)
Q Consensus 35 ~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~ 114 (142)
.+..-.+++..|+++.++.+..|..++..+ ||..++++||+|||+++++|++.|+.+|..+|..++.++..++...+.
T Consensus 29 k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~ 106 (116)
T 1sr2_A 29 AQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYIS 106 (116)
T ss_dssp HHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677899999999999999999999999 999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHH
Q 042062 115 QLKVEHSTL 123 (142)
Q Consensus 115 ~l~~~~~~~ 123 (142)
+|...+.++
T Consensus 107 ~L~~~l~~L 115 (116)
T 1sr2_A 107 DIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.61 E-value=1.7e-15 Score=102.49 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcHHHHHHHHHHHHh--------cCccCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHH---HhcCHH
Q 042062 39 VEDVLTVYFRDSTRTLANIEKELQ--------KTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELC---RAANWE 107 (142)
Q Consensus 39 ~~eli~~F~~d~~~~l~~L~~al~--------~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~---~~~~~~ 107 (142)
+.+++..|++++++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+..+|..+|... +.++..
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~ 80 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999995 33 67899999999999999999999999999999876 677665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042062 108 EAKVSLEQLKVEHSTLKDKLTA 129 (142)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~L~~ 129 (142)
.....+..+...+..+...+..
T Consensus 81 ~~~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 81 ITSDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888777776643
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.48 E-value=3.5e-14 Score=100.90 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHh--------cCccCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHH---HhcCHHH
Q 042062 40 EDVLTVYFRDSTRTLANIEKELQ--------KTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELC---RAANWEE 108 (142)
Q Consensus 40 ~eli~~F~~d~~~~l~~L~~al~--------~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~---~~~~~~~ 108 (142)
.+++..|++++++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+..+|..+|... +.|....
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~ 80 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKI 80 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999999999984 34 78999999999999999999999999999999866 6665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042062 109 AKVSLEQLKVEHSTLKDKLTAY 130 (142)
Q Consensus 109 ~~~~~~~l~~~~~~~~~~L~~~ 130 (142)
....++.+...+..+...+..+
T Consensus 81 ~~~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 81 TSDLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655544
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.44 E-value=1.6e-13 Score=98.22 Aligned_cols=89 Identities=15% Similarity=0.269 Sum_probs=68.6
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHhcC------ccCHHHHHHHHhHhhccccccChHHHHHHHHHHHHH---HHhcCHHHHH
Q 042062 40 EDVLTVYFRDSTRTLANIEKELQKT------EVNYVELDRYFYNLKGSSASIGANKVRNEVNKTREL---CRAANWEEAK 110 (142)
Q Consensus 40 ~eli~~F~~d~~~~l~~L~~al~~~------~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~---~~~~~~~~~~ 110 (142)
.+++..|++++++.+..|..++..- ..++..+.+.+|+|||+|+++|+..+..+|..+|.. .+.+......
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~ 85 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 3789999999999999999999321 115689999999999999999999999999999987 6777544334
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042062 111 VSLEQLKVEHSTLKDKLT 128 (142)
Q Consensus 111 ~~~~~l~~~~~~~~~~L~ 128 (142)
..+..+...+..+...+.
T Consensus 86 ~l~~~l~~~~D~l~~~l~ 103 (146)
T 1i5n_A 86 DIINLFLETKDIMQEQLD 103 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.42 E-value=2.3e-13 Score=93.19 Aligned_cols=89 Identities=8% Similarity=0.172 Sum_probs=70.8
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHhc---Cc---cCHHHHHHHHhHhhccccccChHHHHHHHHHHHH---HHHhcCHHHHH
Q 042062 40 EDVLTVYFRDSTRTLANIEKELQK---TE---VNYVELDRYFYNLKGSSASIGANKVRNEVNKTRE---LCRAANWEEAK 110 (142)
Q Consensus 40 ~eli~~F~~d~~~~l~~L~~al~~---~~---~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~---~~~~~~~~~~~ 110 (142)
.+++..|++++++.+..|..++.. .+ .++..+.+.+|+|||+|+++|+..+..+|..+|. ..+.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 478999999999999999998842 11 1456899999999999999999999999999996 45666655455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042062 111 VSLEQLKVEHSTLKDKLT 128 (142)
Q Consensus 111 ~~~~~l~~~~~~~~~~L~ 128 (142)
..+..+...+..+...+.
T Consensus 85 ~l~~~l~~~~d~l~~~l~ 102 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELD 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777766666553
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.16 E-value=8.3e-11 Score=84.00 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcHHHHHHHHHHHHh---cCccC---HHHHHHHHhHhhccccccChHHHHHHHHHHHHHH---HhcCHHHH
Q 042062 39 VEDVLTVYFRDSTRTLANIEKELQ---KTEVN---YVELDRYFYNLKGSSASIGANKVRNEVNKTRELC---RAANWEEA 109 (142)
Q Consensus 39 ~~eli~~F~~d~~~~l~~L~~al~---~~~~D---~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~---~~~~~~~~ 109 (142)
..+++..|++++++.+..|...+. .++.| ...+.+.+|+|||+|+++|+..+..+|..+|... +.+...--
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 468899999999999999999875 22223 4689999999999999999999999999999755 55543323
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042062 110 KVSLEQLKVEHSTLKDKLTAY 130 (142)
Q Consensus 110 ~~~~~~l~~~~~~~~~~L~~~ 130 (142)
..+++.+...+..+...+..+
T Consensus 89 ~~l~dlll~~~D~l~~lv~~~ 109 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEET 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.81 E-value=1.3e-08 Score=77.25 Aligned_cols=86 Identities=14% Similarity=0.261 Sum_probs=62.4
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHhc---CccC---HHHHHHHHhHhhccccccChHHHHHHHHHHHHHH---HhcCHHHHH
Q 042062 40 EDVLTVYFRDSTRTLANIEKELQK---TEVN---YVELDRYFYNLKGSSASIGANKVRNEVNKTRELC---RAANWEEAK 110 (142)
Q Consensus 40 ~eli~~F~~d~~~~l~~L~~al~~---~~~D---~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~---~~~~~~~~~ 110 (142)
.+++..|++++.+.+..|...+.. ++.| ...+.|.+|+|||+|+.+|...+..+|..+|..- ++|...--.
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~ 85 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 367899999999999999998753 2224 4688899999999999999999999999999654 445432223
Q ss_pred HHHHHHHHHHHHHHH
Q 042062 111 VSLEQLKVEHSTLKD 125 (142)
Q Consensus 111 ~~~~~l~~~~~~~~~ 125 (142)
..+.-+...+..+..
T Consensus 86 ~~~~ll~~~~D~l~~ 100 (225)
T 2lp4_A 86 DIINLFLETKDIMQE 100 (225)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 16
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=91.69 E-value=2.3 Score=29.37 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=52.3
Q ss_pred HHHHH---HcHHHHHHH-HHHHHhcCccCHHHHHHHHhHhhccc--------ccc----------ChHHHHHHHHHHHHH
Q 042062 43 LTVYF---RDSTRTLAN-IEKELQKTEVNYVELDRYFYNLKGSS--------ASI----------GANKVRNEVNKTREL 100 (142)
Q Consensus 43 i~~F~---~d~~~~l~~-L~~al~~~~~D~~~l~~~aH~LKGss--------~~l----------GA~~L~~~c~~LE~~ 100 (142)
|..|. .++.+.+.+ |...++.+ ||..++...|.-=|.- .++ =+..|......|-.+
T Consensus 25 Iq~y~~~i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~A 102 (133)
T 3ls0_A 25 LQVYVNPIAVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAA 102 (133)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55554 447788899 99999999 9999999999644432 222 122334444455566
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 101 CRAANWEEAKVSLEQLKVEHSTLKDKLTAYFEL 133 (142)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 133 (142)
++.+|...+. .+|..+...+..|+++
T Consensus 103 A~~~n~~~a~-------k~Y~~a~adfdafl~l 128 (133)
T 3ls0_A 103 AKDRNGSQAK-------IQYQEALADFDSFLNL 128 (133)
T ss_dssp HHTTCHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHH-------HHHHHHHHHHHHHHHh
Confidence 6666655444 4566666666666655
No 17
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=89.85 E-value=2.2 Score=29.38 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=55.4
Q ss_pred HHHHHH---cHHHHHHHHHHHHhcCccCHHHHHHHHhHhhcccc--------cc----------ChHHHHHHHHHHHHHH
Q 042062 43 LTVYFR---DSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSA--------SI----------GANKVRNEVNKTRELC 101 (142)
Q Consensus 43 i~~F~~---d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~--------~l----------GA~~L~~~c~~LE~~~ 101 (142)
|..|.+ ++.+.+.+|...++.+ ||..++...|.-=|.-+ ++ =+..|......|-.++
T Consensus 23 iq~y~~~i~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA 100 (130)
T 3zsu_A 23 IQDYLRDIEKNAERFADLEVSVAKG--DWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGA 100 (130)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTT--CHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--chHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544 4677889999999999 99999999986444322 21 1234445555666777
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042062 102 RAANWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQ 136 (142)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~ 136 (142)
+.+|...+.. +|..+...+..|+++-++
T Consensus 101 ~~~n~~~a~k-------~Y~~a~adfdafl~liP~ 128 (130)
T 3zsu_A 101 DLDSVTVAQE-------GFREAEADFKAYLNSLPE 128 (130)
T ss_dssp HTTCHHHHHH-------HHHHHHHHHHHHHHHCCC
T ss_pred HhcCHHHHHH-------HHHHHHHHHHHHHHhccC
Confidence 7777655444 566666666677665443
No 18
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=87.04 E-value=6.1 Score=27.71 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHcHHHHHHHHHHHHhcCccCHHHHHHHHhH--------hhccccccCh----------HHHHHHHHHHHHHHHhcCHHH
Q 042062 47 FRDSTRTLANIEKELQKTEVNYVELDRYFYN--------LKGSSASIGA----------NKVRNEVNKTRELCRAANWEE 108 (142)
Q Consensus 47 ~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~--------LKGss~~lGA----------~~L~~~c~~LE~~~~~~~~~~ 108 (142)
++++.+.|..++..++.+ +|..++...|. |+....++.- ..|......|..+++.+|...
T Consensus 52 Ik~~a~~i~~vk~lI~k~--~W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~ 129 (149)
T 1vyk_A 52 AKVSASEILNVKQFIDRK--AWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTE 129 (149)
T ss_dssp HHHHHHHHHTTHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344666678889999999 99999988775 2222333332 455666667778888888777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042062 109 AKVSLEQLKVEHSTLKD 125 (142)
Q Consensus 109 ~~~~~~~l~~~~~~~~~ 125 (142)
+...+......|..+.+
T Consensus 130 a~~~Y~~t~~~ld~vl~ 146 (149)
T 1vyk_A 130 AEKYYGQTVSNINEVLA 146 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555555544443
No 19
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=78.39 E-value=2.9 Score=22.66 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.5
Q ss_pred HHHHHHhcCccCHHHHHHHHhHhhc
Q 042062 56 NIEKELQKTEVNYVELDRYFYNLKG 80 (142)
Q Consensus 56 ~L~~al~~~~~D~~~l~~~aH~LKG 80 (142)
+|.-|...+ ||++++.+=|.||+
T Consensus 16 qiyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 16 QMDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHh
Confidence 456677788 99999999999987
No 20
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=73.15 E-value=13 Score=22.70 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=39.2
Q ss_pred cCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHH--hc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042062 66 VNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCR--AA-NWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQ 136 (142)
Q Consensus 66 ~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~ 136 (142)
||++.++..|-.+++.+..|-. .+..+...+..... .| ........+.++...+..+...|..+-...++
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQ-ILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888877765432 22223333333221 12 23455666667777777776666665554443
No 21
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=70.23 E-value=4.8 Score=29.08 Aligned_cols=59 Identities=8% Similarity=0.282 Sum_probs=41.8
Q ss_pred HHHHhccCcchhhHHHHHHhhcCCCChhhHHHHHHHHHHcHHHH-HHHHHHHHhcCccCHHHHHHHHh
Q 042062 10 EMRQSFFDEEILDRYFIQLEQLGENNPGFVEDVLTVYFRDSTRT-LANIEKELQKTEVNYVELDRYFY 76 (142)
Q Consensus 10 ~~~~~~~~~~~lD~~l~~L~~l~~~~~~~~~eli~~F~~d~~~~-l~~L~~al~~~~~D~~~l~~~aH 76 (142)
+++.++|.+.-....+.+++.+++ .|= ...|++.+... +..+..|..++ |.+.|+.++.
T Consensus 27 ~~~~~~f~~s~~~~~l~~i~~~dp---~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~t 86 (194)
T 2cw9_A 27 DLLGGLFSKTEMSEVLTEILRVDP---AFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDWCY 86 (194)
T ss_dssp HHTCCTTHHHHHHHHHHHHHHHCT---TCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBC
T ss_pred hhhccccCCCHHHHHHHHHHhhCC---CCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhcC
Confidence 334445544444444666666633 553 58899999998 79999999999 9999988753
No 22
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=69.36 E-value=17 Score=22.31 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=11.5
Q ss_pred cCHHHHHHHHhHhhcccccc
Q 042062 66 VNYVELDRYFYNLKGSSASI 85 (142)
Q Consensus 66 ~D~~~l~~~aH~LKGss~~l 85 (142)
||++.++..|-.++..+..|
T Consensus 9 v~~~~l~~~A~~~~~~~~~i 28 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNV 28 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 46666666666666655443
No 23
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=69.24 E-value=49 Score=29.34 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhh--------------cccccc-ChHHHHHHHHHHHHHH
Q 042062 37 GFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLK--------------GSSASI-GANKVRNEVNKTRELC 101 (142)
Q Consensus 37 ~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK--------------Gss~~l-GA~~L~~~c~~LE~~~ 101 (142)
..+..+.+.|.+...- +..|..|...+ |-+.+..++..|. +.|+|= |...+...|..+|..+
T Consensus 304 AvvdqvsD~F~dt~~p-L~~Li~Aa~~g--~ee~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~le~L~ 380 (832)
T 4igg_A 304 AVMDHVSDSFLETNVP-LLVLIEAAKNG--NEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALC 380 (832)
T ss_dssp HHHHHHHHHTSSSSHH-HHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCch-HHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 6777888888766443 45677777777 7666666554443 444332 3444666666777654
Q ss_pred H-----------hcCHHHHHHHHHHHHHHHHHH
Q 042062 102 R-----------AANWEEAKVSLEQLKVEHSTL 123 (142)
Q Consensus 102 ~-----------~~~~~~~~~~~~~l~~~~~~~ 123 (142)
. .-+...+.+.++.+..+|..-
T Consensus 381 PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~~ 413 (832)
T 4igg_A 381 PQVINAALALAAKPQSKLAQENMDLFKEQWEKQ 413 (832)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 4 122234455555555555443
No 24
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=68.97 E-value=18 Score=22.39 Aligned_cols=70 Identities=7% Similarity=0.072 Sum_probs=36.0
Q ss_pred cCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHh--c-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042062 66 VNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRA--A-NWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQ 136 (142)
Q Consensus 66 ~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~ 136 (142)
||++.++..|-.++..+..|-- .+..+...+...... | ..+.+...+.++...+..+...|..+-...++
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTE-VLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766655432 223333333333221 2 23445556666666666666666555444443
No 25
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=63.02 E-value=32 Score=24.22 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=40.7
Q ss_pred HHHHHHHhcCccC-HHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 55 ANIEKELQKTEVN-YVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTAY 130 (142)
Q Consensus 55 ~~L~~al~~~~~D-~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 130 (142)
+.|..+-... | ...+..+...++. .+..+...|+.+-..++++.+...+.+|+= |..+...+...
T Consensus 103 E~le~~~~~~--d~~~~l~~l~~~~~~--------~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f-~~kl~~~i~~~ 168 (174)
T 3hho_A 103 EELESVTACA--DPEAALVAFDTKVTA--------MQRHYLAQLQGQLAQSEWLAAADQIRKLKF-IAKLKNEVERV 168 (174)
T ss_dssp HHHHHHTSSS--SHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHhhcc--chHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444445 6 5556666666654 456667788888888888887777776654 55555555543
No 26
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=62.35 E-value=12 Score=22.88 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=35.5
Q ss_pred cCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHh--c-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042062 66 VNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRA--A-NWEEAKVSLEQLKVEHSTLKDKLTAYFELVAQL 137 (142)
Q Consensus 66 ~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~ 137 (142)
||++.++..|-.+++.+..|-. .+..+...+...... | ..+.+...+.++...+.++...|..+-...+++
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 82 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQS-QINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777776655432 233333333333211 1 122344555555555555555555554444443
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=62.05 E-value=25 Score=24.76 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=34.3
Q ss_pred CHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 67 NYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLTA 129 (142)
Q Consensus 67 D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ 129 (142)
|...+..+...++. .+..+...|..+-..++++.+...+.+|+= |..+...+..
T Consensus 110 d~~~l~~l~~~~~~--------~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y-~~kl~~~i~~ 163 (171)
T 1fpo_A 110 DEARLESFIKRVKK--------MFDTRHQLMVEQLDNETWDAAADTCRKLRF-LDKLRSSAEQ 163 (171)
T ss_dssp CHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 55556555555443 345556667767777888888877777765 5566665554
No 28
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=61.86 E-value=13 Score=23.15 Aligned_cols=65 Identities=6% Similarity=0.115 Sum_probs=39.3
Q ss_pred HHHHHhccCcchhhHH-HHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHh
Q 042062 9 AEMRQSFFDEEILDRY-FIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFY 76 (142)
Q Consensus 9 ~~~~~~~~~~~~lD~~-l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH 76 (142)
..++..+...|+|..+ .+.++.- ....+-++.+++....-.+.-+..+-.++... ++..+....+
T Consensus 25 ~~lld~L~~~~vlt~~~~e~I~~~-~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~L~ 90 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEEEKVRNE-PTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAALLH 90 (94)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTS-SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHHHG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcC-CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHHHh
Confidence 3444455555666666 5566554 23345666777777666677777777777766 6665555443
No 29
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=60.50 E-value=11 Score=23.11 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=33.1
Q ss_pred chhhHHHHHHhhc-CCCChhhHHHHHHHHHHcHHHHHHHHH
Q 042062 19 EILDRYFIQLEQL-GENNPGFVEDVLTVYFRDSTRTLANIE 58 (142)
Q Consensus 19 ~~lD~~l~~L~~l-~~~~~~~~~eli~~F~~d~~~~l~~L~ 58 (142)
.-++..+.+++++ .+-+..|+..++..|=.+.++.+..|-
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455559999999 888999999999999999988776553
No 30
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=55.39 E-value=7.7 Score=25.38 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 042062 87 ANKVRNEVNKTRELCRAANWEEAKVSLEQLK 117 (142)
Q Consensus 87 A~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~ 117 (142)
...+..++..|+.++..++.+.+..++..|+
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~ 41 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLN 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5588888999998877666666767766664
No 31
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=55.32 E-value=47 Score=24.13 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 95 NKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLT 128 (142)
Q Consensus 95 ~~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 128 (142)
..|..+-..++++.+...+.+|+= |..+...+.
T Consensus 169 ~~l~~~~~~~d~~~A~~~v~kL~y-~~kl~~~i~ 201 (207)
T 3bvo_A 169 DNVSSAFEQDDFEEAKEILTKMRY-FSNIEEKIK 201 (207)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 334444445666666665555554 444444443
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=55.30 E-value=53 Score=23.30 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 88 NKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLT 128 (142)
Q Consensus 88 ~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 128 (142)
..+..+...|+.+-..++++.+...+.+|+= |..+...+.
T Consensus 132 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y-~~kl~~~ik 171 (181)
T 3uo3_A 132 ERIQDIEAQLGQCYNDKDYAAAVKLTVELKY-WYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4556666777777777777777776666653 455555544
No 33
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=52.04 E-value=80 Score=24.36 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHhcCHHH----HHHHH
Q 042062 38 FVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEE----AKVSL 113 (142)
Q Consensus 38 ~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~~~~~~----~~~~~ 113 (142)
++.+++..|..=+.-.+.-|+...+-. -.+..+.+--.=|-+.-.=-.......|+.++ .++- +.+. -...+
T Consensus 207 lv~ds~~lY~~inegii~lLe~ffem~--~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~-l~~~-~iP~L~~~p~d~l 282 (310)
T 3zym_A 207 LFKDAIRLFAAYNEGIINLLEKYFDMK--KNQCKEGLDIYKKFLTRMTRISEFLKVAEQVG-IDRG-DISGSGSGHMDRV 282 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCC-CCCCCCcccchHH
Confidence 345556666555555555555555433 11111111111122233334456777777776 4443 4432 24567
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042062 114 EQLKVEHSTLKDKLTAYF 131 (142)
Q Consensus 114 ~~l~~~~~~~~~~L~~~l 131 (142)
.+++.+...++..+..-+
T Consensus 283 ~~lq~~i~ev~~im~~ni 300 (310)
T 3zym_A 283 RNLQSEVEGVKNIMTQNV 300 (310)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 888888888877665433
No 34
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=50.23 E-value=13 Score=22.06 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHH
Q 042062 24 YFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIE 58 (142)
Q Consensus 24 ~l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~ 58 (142)
+|.+||++=..+|+++..++...-+..|+.+..|.
T Consensus 12 qf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~ 46 (61)
T 2f4m_B 12 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS 46 (61)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH
Confidence 48999999445889988888888888887776554
No 35
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=46.53 E-value=20 Score=22.97 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=22.8
Q ss_pred chhhHH-HHHHhhc-CCCChhhHHHHHHHHHHcHH
Q 042062 19 EILDRY-FIQLEQL-GENNPGFVEDVLTVYFRDST 51 (142)
Q Consensus 19 ~~lD~~-l~~L~~l-~~~~~~~~~eli~~F~~d~~ 51 (142)
++||+. |-+|+++ +.-|-+.+..+++..-.+..
T Consensus 2 SvLdqeEFveLrkfKgkvd~~~v~~IL~eiE~~~r 36 (99)
T 2kjg_A 2 SILEDPEFVKLRQFKGKVNFNLVMQILDEIELDLR 36 (99)
T ss_dssp CSCSCHHHHHHHHHTCCSCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHhcccCHHHHHHHHHHHHHHHh
Confidence 468888 9999999 87776666555554444433
No 36
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=42.03 E-value=19 Score=26.69 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=32.3
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcHHHH-HHHHHHHHhcCccCHHHHHHHHh
Q 042062 26 IQLEQLGENNPGFVEDVLTVYFRDSTRT-LANIEKELQKTEVNYVELDRYFY 76 (142)
Q Consensus 26 ~~L~~l~~~~~~~~~eli~~F~~d~~~~-l~~L~~al~~~~~D~~~l~~~aH 76 (142)
..|+++..-+|.|- ...|++.+... +..+-.|..++ |...|+.+++
T Consensus 63 ~~l~~Ik~~DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~lls 109 (222)
T 3qk9_A 63 RVYSQFKLMDPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKWFS 109 (222)
T ss_dssp HHHTTCC-----CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBC
T ss_pred HHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhhcC
Confidence 34555544566774 67899998887 67899999999 9999998765
No 37
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=38.34 E-value=48 Score=20.08 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 108 EAKVSLEQLKVEHSTLKDKLTAYFEL 133 (142)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~L~~~l~~ 133 (142)
.+...+.+....+..+...|..+-..
T Consensus 49 af~~~~~~w~~~~~~~~~~L~~i~~~ 74 (94)
T 3fav_B 49 AYQGVQQKWDATATELNNALQNLART 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444433
No 38
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=37.71 E-value=11 Score=23.12 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHH
Q 042062 24 YFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIE 58 (142)
Q Consensus 24 ~l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~ 58 (142)
+|.+||++=..+|+++..|+...-+..|+.+..|.
T Consensus 14 qf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~ 48 (72)
T 1pve_A 14 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS 48 (72)
T ss_dssp TTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH
Confidence 37888888446899998888888888887765544
No 39
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=36.98 E-value=1.6e+02 Score=24.54 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHc--HHHHHHHHH-HHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHhc-CHHHHHH
Q 042062 36 PGFVEDVLTVYFRD--STRTLANIE-KELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAA-NWEEAKV 111 (142)
Q Consensus 36 ~~~~~eli~~F~~d--~~~~l~~L~-~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~~-~~~~~~~ 111 (142)
+.|+..|+ .|=.| .++.+..|+ ..+.....+++.+. .+|..|..|..++..+.....-- .......
T Consensus 118 ~~Fl~~L~-~fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~---------~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~ 187 (536)
T 3err_A 118 ENFIPTIV-NFSAEEISDAIREKMKKNYMSNPSYNYEIVN---------RASLAAGPMVKWAIAQLNYADMLKRVEPLRN 187 (536)
T ss_dssp TTHHHHHH-HCCGGGCCHHHHHHHHHHTTTSTTCSHHHHH---------HHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCcccCCHHHHHHHHHHhcCCCCCCHHHHH---------HHHHHHHHHHHHHHhcchhHHHHHhhhhhHH
Confidence 46777644 45333 455677776 57766645556554 34556777888888888765432 2334455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042062 112 SLEQLKVEHSTLKDKLTAYF 131 (142)
Q Consensus 112 ~~~~l~~~~~~~~~~L~~~l 131 (142)
.+..++.++..+...|+..+
T Consensus 188 eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 188 ELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666665443
No 40
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=33.93 E-value=47 Score=16.45 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 042062 114 EQLKVEHSTLKDKLTAYFELVAQL 137 (142)
Q Consensus 114 ~~l~~~~~~~~~~L~~~l~~~~~~ 137 (142)
+.++.++.+++..+...|+..-++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467778888888887777765544
No 41
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=33.01 E-value=1e+02 Score=22.18 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCccCHHHHHHHHhHhhccc
Q 042062 51 TRTLANIEKELQKTEVNYVELDRYFYNLKGSS 82 (142)
Q Consensus 51 ~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss 82 (142)
.+.+..|..|+..+ |-+.+.++...||---
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~~~ 181 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKMLE 181 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhh
Confidence 45689999999999 9999999999887543
No 42
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.48 E-value=37 Score=21.42 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhc---------cCcchhhHH-HHHHhhcC-CCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHH
Q 042062 4 LRQQIAEMRQSF---------FDEEILDRY-FIQLEQLG-ENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELD 72 (142)
Q Consensus 4 ~~~~~~~~~~~~---------~~~~~lD~~-l~~L~~l~-~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~ 72 (142)
|+..-..+++.+ +..|+|... .+.++..+ ....+-.+++++....-.|.-+..+-.++... ++..+.
T Consensus 10 L~~~r~~Lv~~l~~~~vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et--~~~~La 87 (97)
T 3ygs_P 10 LRRCRLRLVEELQVDQLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDT--GQDMLA 87 (97)
T ss_dssp HHHTHHHHHHHCCCTTTHHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTT--TCHHHH
T ss_pred HHHhHHHHHHHCcHHHHHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHc--CcHHHH
Confidence 444444555544 444455555 55555541 23445566666666666666666666666654 444444
Q ss_pred HH
Q 042062 73 RY 74 (142)
Q Consensus 73 ~~ 74 (142)
++
T Consensus 88 ~l 89 (97)
T 3ygs_P 88 SF 89 (97)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 43
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.84 E-value=94 Score=19.03 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 042062 86 GANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHSTLKDKLT-AYFELVAQL 137 (142)
Q Consensus 86 GA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~-~~l~~~~~~ 137 (142)
||..+-+-+..||.. .+-+...|++|-.+|...+..|. ++-.+|.+.
T Consensus 1 ~~~dlEEKv~~LE~s-----ld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 1 GAMGLEEKVTRMESS-----VDLLQTRFARILAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp ---CHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555443 34466777888888877777773 334445544
No 44
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=29.71 E-value=74 Score=22.44 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=37.1
Q ss_pred HHHhccCcchhhHH-HHHHhhc--CCCChhhHHHHHHHHHHcHHHHHHHHHHHHhc
Q 042062 11 MRQSFFDEEILDRY-FIQLEQL--GENNPGFVEDVLTVYFRDSTRTLANIEKELQK 63 (142)
Q Consensus 11 ~~~~~~~~~~lD~~-l~~L~~l--~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~ 63 (142)
|+..+.+-=..+.+ +..|..+ ...+|++ +..+..+++++..++..|++.++.
T Consensus 17 f~~~L~Diy~aE~q~~~aL~~~~~~a~~p~L-k~~l~~H~~eT~~qi~rLe~i~~~ 71 (173)
T 2gyq_A 17 LLHGLRDIYYAEQQITKALPKMIEQATNRDL-SQGLTSHLEETQKQIERLDQVFKK 71 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333345666 7777777 3456665 566999999999999999998864
No 45
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=29.71 E-value=2.2e+02 Score=22.80 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=48.5
Q ss_pred HHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 042062 43 LTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHST 122 (142)
Q Consensus 43 i~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~~~ 122 (142)
|+.=+++......+|..++...+.|...+.......=+++.|=|-....+..-.=+...+.. ...+.+|+..|..
T Consensus 307 iE~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~LqG~v~~~Vn~G~~~y~~~Fl~~~~~~~~~-----~~~v~~Lk~~~~~ 381 (428)
T 2wm9_A 307 IEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYP-----DNKVKLLKEVFRQ 381 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHSCSSSCCTHHHHHHHSCC------------CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccCccCCcHHHHHHHHcCCcccccCC-----HHHHHHHHHHHHH
Confidence 45556677777777887777665677777776665555566655554433221111111110 0134555555555
Q ss_pred HHHHHHHHHHHHHhhc
Q 042062 123 LKDKLTAYFELVAQLG 138 (142)
Q Consensus 123 ~~~~L~~~l~~~~~~~ 138 (142)
....+..-|.+++++.
T Consensus 382 ~~~~~~~~L~lh~~~~ 397 (428)
T 2wm9_A 382 FVEACGQALAVNERLI 397 (428)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhC
Confidence 5555555555555443
No 46
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=27.59 E-value=89 Score=23.86 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=32.8
Q ss_pred hccccccChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 042062 79 KGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEH 120 (142)
Q Consensus 79 KGss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~ 120 (142)
-|+.|.++++-+...|.++=++.++|+.+.+..+..++..-+
T Consensus 210 ~G~~G~i~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 251 (309)
T 3fkr_A 210 AGATGAMTGGGFPDGIRPILEAWREGRHDDAYARYQAWLPLI 251 (309)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 566666777778899999999999999998877766655443
No 47
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=26.70 E-value=14 Score=18.19 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHhccC
Q 042062 2 EALRQQIAEMRQSFFD 17 (142)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (142)
+.||+||+.++.++..
T Consensus 4 e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 4 EDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888888877653
No 48
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=26.38 E-value=3.2e+02 Score=23.79 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=66.1
Q ss_pred HHHHhhc-CCCChhhHHHHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccc--cChHHHHHHHHHHHHHH
Q 042062 25 FIQLEQL-GENNPGFVEDVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSAS--IGANKVRNEVNKTRELC 101 (142)
Q Consensus 25 l~~L~~l-~~~~~~~~~eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~--lGA~~L~~~c~~LE~~~ 101 (142)
+..|-.+ ...+|+|..+++... +.+++.++.++ ||...+.+.|-|-.-... +-...+..+...|=..+
T Consensus 67 yAaLVgllN~k~pe~G~~lv~~l-------~~~f~~~l~~~--~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~ 137 (771)
T 1h2v_C 67 YTTLVGLLNARNYNFGGEFVEAM-------IRQLKESLKAN--NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVT 137 (771)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-------HHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCChhHHHHHHHHH-------HHHHHHHHHcc--ChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhh
Confidence 4455555 556677766665544 45667788889 999999999988877554 78888888888776655
Q ss_pred HhcCHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042062 102 RAANWEE-----------------AKVSLEQLKVEHSTLKDKLTAYFEL 133 (142)
Q Consensus 102 ~~~~~~~-----------------~~~~~~~l~~~~~~~~~~L~~~l~~ 133 (142)
.+.+... ...+.+.-..+++.+...++.|+..
T Consensus 138 ~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~~~~~l~~lle~~~~yl~~ 186 (771)
T 1h2v_C 138 QEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKR 186 (771)
T ss_dssp GCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCcccchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 4332211 2233445556677777777777754
No 49
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=25.64 E-value=13 Score=19.01 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=5.6
Q ss_pred HHHhHhhcc
Q 042062 73 RYFYNLKGS 81 (142)
Q Consensus 73 ~~aH~LKGs 81 (142)
+-.|+|||-
T Consensus 2 rElhTLkgh 10 (31)
T 3m50_P 2 RELHTLKGH 10 (31)
T ss_dssp HHHHCHHHH
T ss_pred chhhHHHHH
Confidence 346777763
No 50
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.00 E-value=1.2e+02 Score=18.16 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=13.3
Q ss_pred ccccccChHHHHHHHHHHH
Q 042062 80 GSSASIGANKVRNEVNKTR 98 (142)
Q Consensus 80 Gss~~lGA~~L~~~c~~LE 98 (142)
|||++-|+.....+...+.
T Consensus 1 ~~~~~~~~~~~~~i~~~i~ 19 (73)
T 1x59_A 1 GSSGSSGMAERAALEELVK 19 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHH
Confidence 6888888887666655554
No 51
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=23.20 E-value=1.1e+02 Score=23.27 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCccCHHHHHHHH
Q 042062 51 TRTLANIEKELQKTEVNYVELDRYF 75 (142)
Q Consensus 51 ~~~l~~L~~al~~~~~D~~~l~~~a 75 (142)
.+.+.+++.+++++ |++.+.+.-
T Consensus 281 ~~~l~~l~~~l~~~--d~~~l~~~~ 303 (314)
T 3ggo_A 281 EKSLNHLKELIVRE--AEEELVEYL 303 (314)
T ss_dssp HHHHHHHHHHHHHT--CSHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHH
Confidence 34466777777777 777666553
No 52
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine nucleotide exchang factor, GTPA signaling protein; 2.08A {Mus musculus}
Probab=22.79 E-value=2.5e+02 Score=21.26 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=49.5
Q ss_pred HHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHHhHhhccccccChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 042062 43 LTVYFRDSTRTLANIEKELQKTEVNYVELDRYFYNLKGSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEHST 122 (142)
Q Consensus 43 i~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~~~ 122 (142)
|+.=+++......+|..++...+.|...+.......=+++.|=|-....+..-.= ...+. .....+.+|+..|..
T Consensus 167 iE~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~L~G~Vd~~VngG~~~y~~~Fl~~----~~~~~-~~~~~v~~Lk~~~~~ 241 (288)
T 3vhl_A 167 IEVAIEDMKKKTLQLAVATHQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAE----IPADP-KLYRHHNKLRLCFKE 241 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHCCSSSCCHHHHHHHHTSS----CCSSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHhhheEeccccccCHHHHHHHHcCC----cccCh-hhHHHHHHHHHHHHH
Confidence 3444555566666677766654457777777666655566666655553322110 11122 223455666666666
Q ss_pred HHHHHHHHHHHHHhhc
Q 042062 123 LKDKLTAYFELVAQLG 138 (142)
Q Consensus 123 ~~~~L~~~l~~~~~~~ 138 (142)
....+..-|.+++++.
T Consensus 242 ~~~~l~~~L~lh~~li 257 (288)
T 3vhl_A 242 FIMRCGEAVEKNRRLI 257 (288)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6666666666655544
No 53
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=22.20 E-value=53 Score=23.40 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcHHHHHHHHH
Q 042062 24 YFIQLEQLGENNPGFVEDVLTVYFRDSTRTLANIE 58 (142)
Q Consensus 24 ~l~~L~~l~~~~~~~~~eli~~F~~d~~~~l~~L~ 58 (142)
+|.+||++=..||.++..|+...-+..|..+..|.
T Consensus 34 qf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~ 68 (171)
T 2qsf_X 34 DLLSLRQVVSGNPEALAPLLENISARYPQLREHIM 68 (171)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHH
Confidence 38889988345788888888877777776665543
No 54
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.12 E-value=2e+02 Score=19.81 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHhccCcchhh
Q 042062 2 EALRQQIAEMRQSFFDEEILD 22 (142)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~lD 22 (142)
++.|++|..++..+.+..+|+
T Consensus 42 a~vrq~Ia~LP~eVsd~s~l~ 62 (152)
T 4fla_A 42 ATVRQKIASLPQEVQDVSLLE 62 (152)
T ss_dssp HHHHHHHHTSCGGGTCGGGGG
T ss_pred HHHHHHHHcCCccccCHHHHH
Confidence 467788888887777777766
No 55
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=21.89 E-value=1.2e+02 Score=17.07 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh
Q 042062 108 EAKVSLEQLKVEHSTLKDKL--TAYFELVAQL 137 (142)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~L--~~~l~~~~~~ 137 (142)
.+...+..|+..|..++..| +++-++.+++
T Consensus 10 e~ld~l~~LEkqF~~LkEqlY~ERl~ql~~~L 41 (49)
T 2xus_A 10 ECVSEMLDLEKQFSELKEKLFRERLSQLRLRL 41 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888876 4555555554
No 56
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.65 E-value=1.5e+02 Score=18.31 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=13.8
Q ss_pred cCHHHHHHHHhHhhcccccc
Q 042062 66 VNYVELDRYFYNLKGSSASI 85 (142)
Q Consensus 66 ~D~~~l~~~aH~LKGss~~l 85 (142)
|||..+...+-.+.+.+..|
T Consensus 11 v~~~~l~~~a~~~~~~~~~i 30 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFV 30 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHH
Confidence 56777777777777766555
No 57
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=21.34 E-value=1.3e+02 Score=24.25 Aligned_cols=31 Identities=6% Similarity=0.243 Sum_probs=25.6
Q ss_pred HHHHHHHc-HHHHHHHHHHHHhcCccCHHHHHHH
Q 042062 42 VLTVYFRD-STRTLANIEKELQKTEVNYVELDRY 74 (142)
Q Consensus 42 li~~F~~d-~~~~l~~L~~al~~~~~D~~~l~~~ 74 (142)
....+++. ++..+..|..|+.++ ||+.+.++
T Consensus 238 ~~~~~v~~~~~~~~~~l~~AL~~g--D~~~~g~l 269 (414)
T 3f0n_A 238 LLKFRAESVVPERMKEMTRCIQEQ--DFQGFAQL 269 (414)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 34666777 789999999999999 99988664
No 58
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=20.55 E-value=2.1e+02 Score=22.44 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=25.7
Q ss_pred HHHHHHHHhHhhccccccCh-------------HHHHHHHHHHHHHHHh
Q 042062 68 YVELDRYFYNLKGSSASIGA-------------NKVRNEVNKTRELCRA 103 (142)
Q Consensus 68 ~~~l~~~aH~LKGss~~lGA-------------~~L~~~c~~LE~~~~~ 103 (142)
...+..+++..|..++++|- ..++..+..|=.+.+.
T Consensus 91 a~~i~~La~~vK~gAAsl~~~d~~tQv~lLna~kdVa~al~~Li~atK~ 139 (332)
T 3dyj_A 91 VATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALGDLISATKA 139 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999964 4455555666555554
No 59
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=20.13 E-value=1.7e+02 Score=18.39 Aligned_cols=29 Identities=14% Similarity=0.432 Sum_probs=20.9
Q ss_pred HHHHHHHHcHHHHHHHHHHHHhcCccCHHHHHHHH
Q 042062 41 DVLTVYFRDSTRTLANIEKELQKTEVNYVELDRYF 75 (142)
Q Consensus 41 eli~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~a 75 (142)
+++...+++ +.+|+.|++.. ||+.+++-.
T Consensus 60 rllsrlfee----mdelreaveke--dwenlrdel 88 (114)
T 2p06_A 60 RLLSRLFEE----MDELREAVEKE--DWENLRDEL 88 (114)
T ss_dssp HHHHHHHHH----HHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHH--HHHHHHHHH
Confidence 444444443 67899999999 999988753
No 60
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.00 E-value=98 Score=23.62 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=30.4
Q ss_pred ccccccChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 042062 80 GSSASIGANKVRNEVNKTRELCRAANWEEAKVSLEQLKVEH 120 (142)
Q Consensus 80 Gss~~lGA~~L~~~c~~LE~~~~~~~~~~~~~~~~~l~~~~ 120 (142)
|+.|.+++.-....|.++=.+.++|+.+.+..+..++..-+
T Consensus 212 G~~G~i~~~~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 252 (313)
T 3dz1_A 212 GADGAMTGYCFPDMLVDVVKLSKAGQRDLAHNLFDAHLPLI 252 (313)
T ss_dssp TCCEEEECCSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEeCcccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44555555668889999999999999998877766665443
Done!