BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042063
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DQU|A Chain A, Crystal Structure Of The Isocitrate Lyase From Aspergillus
Nidulans
Length = 538
Score = 566 bits (1460), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/525 (53%), Positives = 355/525 (67%), Gaps = 8/525 (1%)
Query: 28 WWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWRTLKTHQANGTASRTFGALD 87
WW R+R T+RP++A +VA RG+L+ Y SN AKKLW L+ + N AS T+G LD
Sbjct: 21 WWKDSRWRYTKRPFTAEQIVAKRGNLKIEYPSNVQAKKLWGILERNFKNKEASFTYGCLD 80
Query: 88 PVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRK 147
P VT MAK+LD++YVSGWQ SST +ST+EP PDLADYP +TVPNKV HL+ AQ +HDRK
Sbjct: 81 PTMVTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMNTVPNKVNHLWMAQLFHDRK 140
Query: 148 QXXXXXXXXXXXXXXTPCVDYLKPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHIEDQS 207
Q VDYL+PII +KL KLFVERGAAG+HIEDQ+
Sbjct: 141 QREERMTTPKDQRHKVANVDYLRPIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQA 200
Query: 208 SVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRD 267
TKKCGHMAGKVLV ISEHINRLVA R Q D+MG + + +ARTD+EAATLI + +D RD
Sbjct: 201 PGTKKCGHMAGKVLVPISEHINRLVAIRAQADIMGTDLLAIARTDSEAATLITSTIDHRD 260
Query: 268 HQFILGVTNPNLRGKXXXXXXXXXXXXGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNN 327
H FI+G TNP++ + GK GAELQAIED W+A AGLK F++ V+DA+N
Sbjct: 261 HPFIIGSTNPDI--QPLNDLMVMAEQAGKNGAELQAIEDEWLAKAGLKLFNDAVVDAIN- 317
Query: 328 LNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKG 387
N+ K+ + +++ S K S+ + R IA+ + ++++DW+ PRTREG+YR++G
Sbjct: 318 -NSPLPNKKAAIEKYLTQS---KGKSNLEARAIAKEIAGTDIYFDWEAPRTREGYYRYQG 373
Query: 388 SVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDAS 447
AI R A+AP ADLIWME+ PD + +FA G+ + PE LAYNLSPSFNW
Sbjct: 374 GTQCAINRAVAYAPFADLIWMESKLPDYKQAKEFADGVHAVWPEQKLAYNLSPSFNWK-K 432
Query: 448 GMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRGMLAYVERIQREER 507
M +E + +I R+ LG+ WQFITLAG H AL+ DTFAK YA++GM AY E +Q E
Sbjct: 433 AMPRDEQETYIKRLGALGYAWQFITLAGLHTTALISDTFAKAYAKQGMRAYGELVQEPEM 492
Query: 508 NNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQFK 552
NGVD + HQKWSGANY D LK + GG+SSTAAMGKGVTEDQFK
Sbjct: 493 ANGVDVVTHQKWSGANYVDNMLKMITGGVSSTAAMGKGVTEDQFK 537
>pdb|3LG3|A Chain A, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
pdb|3LG3|B Chain B, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
Length = 435
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 130/247 (52%), Gaps = 8/247 (3%)
Query: 29 WNSERFRLTRRPYSARDVVALRGSLR-QSYGSNEMAKKLWRTLKTHQANGTASRTFGALD 87
W S R++ RPYSA DV+ LRGS+ + + AKKLW L G + GAL
Sbjct: 16 WTSPRWKNITRPYSAEDVIKLRGSVNPECTFAQNGAKKLWELLHGGSRKGYIN-CLGALT 74
Query: 88 PVQVTMMAKH-LDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDR 146
Q AK +++IY SGWQ ++ + + PD + YP D+VP V+ + + + D+
Sbjct: 75 GGQALQQAKAGVEAIYXSGWQVAADANTASSXYPDQSLYPVDSVPAVVKRINNSFRRADQ 134
Query: 147 KQXXXXXXXXXXXXXXTPCVDYLKPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHIEDQ 206
Q DY PI+ +L K +E GAAGVH EDQ
Sbjct: 135 IQWSNNIEPGSKGY-----TDYFLPIVADAEAGFGGVLNAFELXKAXIEAGAAGVHFEDQ 189
Query: 207 SSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTR 266
+ KKCGH GKVLV E I +LVAARL DV+GV T+L+ARTDA+AA L+ ++ D
Sbjct: 190 LAAVKKCGHXGGKVLVPTQEAIQKLVAARLAADVLGVPTLLIARTDADAADLLTSDCDPY 249
Query: 267 DHQFILG 273
D +FI G
Sbjct: 250 DREFITG 256
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 377 RTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAY 436
RT EGF+R + ++ AI RG A+AP+ADL+W ET++PDLA +FA + ++ P +LAY
Sbjct: 258 RTAEGFFRTRAGIEQAISRGLAYAPYADLVWCETSTPDLALAKRFADAVHAQFPGKLLAY 317
Query: 437 NLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYAR-RGM 495
N SPSFNW + +TD+++ F ++ G+ +QFITLAG H+ A YA+ G
Sbjct: 318 NCSPSFNWKKN-LTDQQIASFQDELSAXGYKYQFITLAGIHSXWFNXFDLAHAYAQGEGX 376
Query: 496 LAYVERIQREE---RNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQF 551
YVE++Q+ E + G +HQ+ G Y+DK +QGG SS A+ E QF
Sbjct: 377 KHYVEKVQQPEFASVDRGYTFASHQQEVGTGYFDKVTNIIQGGASSVTALTGSTEEQQF 435
>pdb|1IGW|A Chain A, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|B Chain B, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|C Chain C, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|D Chain D, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
Length = 434
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 128/250 (51%), Gaps = 8/250 (3%)
Query: 26 QAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEM-AKKLWRTLKTHQANGTASRTFG 84
Q W R+ RPYSA DVV LRGS+ ++ A K+WR L G + + G
Sbjct: 12 QKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYIN-SLG 70
Query: 85 ALDPVQVTMMAKH-LDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQY 143
AL Q AK ++++Y+SGWQ ++ PD + YP ++VP VE + +
Sbjct: 71 ALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRR 130
Query: 144 HDRKQXXXXXXXXXXXXXXTPCVDYLKPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHI 203
D+ Q VDY PI+ +L K +E GAA VH
Sbjct: 131 ADQIQWSAGIEPGDPRY-----VDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHF 185
Query: 204 EDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNV 263
EDQ + KKCGHM GKVLV E I +LVAARL DV GV T+LVARTDA+AA LI ++
Sbjct: 186 EDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADLITSDC 245
Query: 264 DTRDHQFILG 273
D D +FI G
Sbjct: 246 DPYDSEFITG 255
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 377 RTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAY 436
RT EGF+R ++ AI RG A+AP+ADL+W ET++PDL +FA I +K+P +LAY
Sbjct: 257 RTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAY 316
Query: 437 NLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYAR-RGM 495
N SPSFNW + + D+ + F +++ +G+ +QFITLAG H+ + A YA+ GM
Sbjct: 317 NCSPSFNWQKN-LDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGM 375
Query: 496 LAYVERIQREE---RNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQF 551
YVE++Q+ E +G ++HQ+ G Y+DK +QGG SS A+ E QF
Sbjct: 376 KHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGTSSVTALTGSTEESQF 434
>pdb|3I4E|A Chain A, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|B Chain B, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|C Chain C, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|D Chain D, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
Length = 439
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 125/248 (50%), Gaps = 11/248 (4%)
Query: 28 WWNSERFRLTRRPYSARDVVALRGSLRQSYG-SNEMAKKLWRTLKTHQANGTASRTFGAL 86
W R++ +R ++A DVV LRGS++Q + + A+KLW + N GAL
Sbjct: 18 WETDPRWKGIKRAFTAEDVVRLRGSIQQEHTLAKRGAEKLWTLIN----NEPFVNALGAL 73
Query: 87 DPVQVTMMAKH-LDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHD 145
Q K L +IY+SGWQ + E PD + YP ++VP V+ + D
Sbjct: 74 TGNQAMQQVKAGLKAIYLSGWQVAGDANVAGEMYPDQSLYPANSVPLVVKRINNTLTRAD 133
Query: 146 RKQXXXXXXXXXXXXXXTPCVDYLKPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHIED 205
+ Q VD+ PI+ +L K +E GA+GVH ED
Sbjct: 134 QIQWSEGKNPGDEGY-----VDFFAPIVADAEAGFGGVLNAFELMKAMIEAGASGVHFED 188
Query: 206 QSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDT 265
Q + KKCGHM GKVLV E + +L AARL DVMG TVLVARTDAEAA LI +++D
Sbjct: 189 QLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVARTDAEAADLITSDIDD 248
Query: 266 RDHQFILG 273
D ++ G
Sbjct: 249 NDKPYLTG 256
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 377 RTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAY 436
RT EGF+R K ++ AI RG A+AP+ADLIW ET PDL KFA I + P +L+Y
Sbjct: 258 RTVEGFFRTKPGLEQAISRGLAYAPYADLIWCETGKPDLEYAKKFAEAIHKQFPGKLLSY 317
Query: 437 NLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRGML 496
N SPSFNW + + D + F + +G+ +QFITLAGFHA + A YAR M
Sbjct: 318 NCSPSFNWKKN-LDDATIAKFQKELGAMGYKFQFITLAGFHALNYSMFNLAHGYARTQMS 376
Query: 497 AYVERIQRE--ERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQ 550
A+VE Q E + G + HQ+ G Y+D +TV+ S+TA G TED+
Sbjct: 377 AFVELQQAEFAAADKGFTAVKHQREVGTGYFDAVTQTVEREASTTALHGS--TEDE 430
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 377 RTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAY 436
RTREGFYR K ++ I R A+AP ADLIWMET +PDL +F+ +K+++P+ MLAY
Sbjct: 254 RTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAY 313
Query: 437 NLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRGML 496
N SPSFNW + D + F +A +GF +QFITLAGFHA + A YA+ M
Sbjct: 314 NCSPSFNWKKH-LDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMS 372
Query: 497 AYVERIQRE--ERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQF 551
AYVE +RE G HQ+ GA Y+D+ TV S+TA G E QF
Sbjct: 373 AYVELQEREFAAEERGYTATKHQREVGAGYFDRIATTVDPNSSTTALTGS-TEEGQF 428
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 124/250 (49%), Gaps = 15/250 (6%)
Query: 26 QAWWNSERFRLTRRPYSARDVVALRGSLRQSYG-SNEMAKKLWRTLKTHQANGTASRTFG 84
Q W + R++ R YSA DVVAL+GS+ + + + A+ LW L + G
Sbjct: 16 QEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEW----VNALG 71
Query: 85 ALDP-VQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQY 143
AL + V + L +IY+SGWQ + + PD + YP ++VP V + A Q
Sbjct: 72 ALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQR 131
Query: 144 HDRKQXXXXXXXXXXXXXXTPCVDYLKPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHI 203
D+ T ++L PI+ +L K + G AG H
Sbjct: 132 ADQ---------IAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHW 182
Query: 204 EDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNV 263
EDQ + KK GH+ GKVL+ +HI L +ARL DV V TV++ARTDAEAATLI ++V
Sbjct: 183 EDQLASEKKSGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSDV 242
Query: 264 DTRDHQFILG 273
D RD FI G
Sbjct: 243 DERDQPFITG 252
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 377 RTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAY 436
RTREGFYR K ++ I R A+AP ADLIWMET +PDL +F+ +K+++P+ MLAY
Sbjct: 254 RTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAY 313
Query: 437 NLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRGML 496
N SPSFNW + D + F +A +GF +QFITLAGFHA + A YA+ M
Sbjct: 314 NCSPSFNWKKH-LDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMS 372
Query: 497 AYVERIQRE--ERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQF 551
AYVE +RE G HQ+ GA Y+D+ TV S+TA G E QF
Sbjct: 373 AYVELQEREFAAEERGYTATKHQREVGAGYFDRIATTVDPNSSTTALTGS-TEEGQF 428
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 125/250 (50%), Gaps = 15/250 (6%)
Query: 26 QAWWNSERFRLTRRPYSARDVVALRGSLRQSYG-SNEMAKKLWRTLKTHQANGTASRTFG 84
Q W + R++ R YSA DVVAL+GS+ + + + A+ LW L + G
Sbjct: 16 QEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEW----VNALG 71
Query: 85 ALDP-VQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQY 143
AL + V + L +IY+SGWQ + + PD + YP ++VP V + A Q
Sbjct: 72 ALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQR 131
Query: 144 HDRKQXXXXXXXXXXXXXXTPCVDYLKPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHI 203
D+ T ++L PI+ +L K + G AG H
Sbjct: 132 ADQ---------IAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHW 182
Query: 204 EDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNV 263
EDQ + KKCGH+ GKVL+ +HI L +ARL DV V TV++ARTDAEAATLI ++V
Sbjct: 183 EDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSDV 242
Query: 264 DTRDHQFILG 273
D RD FI G
Sbjct: 243 DERDQPFITG 252
>pdb|3EOL|A Chain A, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
pdb|3EOL|B Chain B, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
Length = 433
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 102/185 (55%), Gaps = 3/185 (1%)
Query: 370 FWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKH 429
F D++ RT EGFY+ K ++ I R A+AP+ DLIWMET+ PDLA+ +FA + H
Sbjct: 246 FVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAH 305
Query: 430 PEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKD 489
P +LAYN SPSFNW + + D + F + +G+ +QFITLAGFH + A+
Sbjct: 306 PGKLLAYNCSPSFNWKKN-LDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARG 364
Query: 490 YARRGMLAYVERIQRE--ERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVT 547
Y R M AY E Q E +G HQ+ G Y+D + GG SST AM +
Sbjct: 365 YKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTE 424
Query: 548 EDQFK 552
QFK
Sbjct: 425 TAQFK 429
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 33 RFRLTRRPYSARDVVALRGSLRQSYGSNEM-AKKLWRTLKTHQANGTASRTFGALDPVQV 91
RF R ++A DV LRGS+ Y EM A +LW+ + H+ + GAL Q
Sbjct: 19 RFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLI--HEEDFV--NALGALSGNQA 74
Query: 92 TMMAKH-LDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQXX 150
M + L +IY+SGWQ ++ + + PD + YP + P + + Q D+ +
Sbjct: 75 MQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETA 134
Query: 151 XXXXXXXXXXXXTPCVD-YLKPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHIEDQSSV 209
VD + PI+ ++ K ++E GAAGVH EDQ +
Sbjct: 135 EGKGL---------SVDTWFAPIVADAEAGFGDPLDAFEIMKAYIEAGAAGVHFEDQLAS 185
Query: 210 TKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRDHQ 269
KKCGH+ GKVL+ + HI L AARL DVMG T++VARTDAEAA L+ +++D RD
Sbjct: 186 EKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQP 245
Query: 270 FI 271
F+
Sbjct: 246 FV 247
>pdb|3E5B|A Chain A, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|B Chain B, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|C Chain C, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|D Chain D, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3OQ8|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3P0X|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
Length = 433
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 102/185 (55%), Gaps = 3/185 (1%)
Query: 370 FWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKH 429
F D++ RT EGFY+ K ++ I R A+AP+ DLIWMET+ PDLA+ +FA + H
Sbjct: 246 FVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMETSKPDLAQARRFAEAVHKAH 305
Query: 430 PEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKD 489
P +LAYN SPSFNW + + D + F + +G+ +QFITLAGFH + A+
Sbjct: 306 PGKLLAYNCSPSFNWKKN-LDDATIAKFQRELGAMGYKFQFITLAGFHQLNYGMFELARG 364
Query: 490 YARRGMLAYVERIQRE--ERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVT 547
Y R M AY E Q E +G HQ+ G Y+D + GG SST AM +
Sbjct: 365 YKDRQMAAYSELQQAEFAAEADGYTATKHQREVGTGYFDAVSLAITGGQSSTTAMKESTE 424
Query: 548 EDQFK 552
QFK
Sbjct: 425 TAQFK 429
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 33 RFRLTRRPYSARDVVALRGSLRQSYGSNEM-AKKLWRTLKTHQANGTASRTFGALDPVQV 91
RF R ++A DV LRGS+ Y EM A +LW+ + H+ + GAL Q
Sbjct: 19 RFDGIERAHTAEDVKRLRGSVEIKYSLAEMGANRLWKLI--HEEDFV--NALGALSGNQA 74
Query: 92 TMMAKH-LDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQXX 150
M + L +IY+SGWQ ++ + + PD + YP + P + + Q D+ +
Sbjct: 75 MQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETA 134
Query: 151 XXXXXXXXXXXXTPCVD-YLKPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHIEDQSSV 209
VD + PI+ ++ K ++E GAAGVH EDQ +
Sbjct: 135 EGKGL---------SVDTWFAPIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLAS 185
Query: 210 TKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRDHQ 269
KKCGH+ GKVL+ + HI L AARL DVMG T++VARTDAEAA L+ +++D RD
Sbjct: 186 EKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQP 245
Query: 270 FI 271
F+
Sbjct: 246 FV 247
>pdb|3FA3|A Chain A, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|B Chain B, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|C Chain C, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|D Chain D, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|E Chain E, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|F Chain F, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|G Chain G, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|H Chain H, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|I Chain I, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|J Chain J, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|K Chain K, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|L Chain L, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|M Chain M, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|N Chain N, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|O Chain O, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|P Chain P, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA4|A Chain A, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|B Chain B, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|C Chain C, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|D Chain D, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|E Chain E, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|F Chain F, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|G Chain G, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|H Chain H, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|I Chain I, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|J Chain J, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|K Chain K, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|L Chain L, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
Length = 302
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 171 PIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINR 230
P+I + + + G A HIEDQ TK+CGH+AGK+LV ++ R
Sbjct: 82 PVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQ-TKRCGHLAGKILVDTDTYVTR 140
Query: 231 LVAARLQFDVMGVETVLVARTDA 253
+ AA +G + V++ARTD+
Sbjct: 141 IRAAVQARQRIGSDIVVIARTDS 163
>pdb|3LYE|A Chain A, Crystal Structure Of Oxaloacetate Acetylhydrolase
pdb|3M0J|A Chain A, Structure Of Oxaloacetate Acetylhydrolase In Complex With
The Inhibitor 3,3-Difluorooxalacetate
pdb|3M0K|A Chain A, Structure Of Oxaloacetate Acetylhydrolase In Complex With
The Product Oxalate
Length = 307
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 193 FVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTD 252
++ G AG H+EDQ +TK+CGH++GK +V+ E++ R+ AA + + VL+ARTD
Sbjct: 112 YIRSGVAGAHLEDQI-LTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTD 170
Query: 253 A 253
A
Sbjct: 171 A 171
>pdb|1ZLP|A Chain A, Petal Death Protein Psr132 With Cysteine-Linked
Glutaraldehyde Forming A Thiohemiacetal Adduct
pdb|1ZLP|B Chain B, Petal Death Protein Psr132 With Cysteine-Linked
Glutaraldehyde Forming A Thiohemiacetal Adduct
Length = 318
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMG-VETV 246
+ + + GA GV +EDQ KKCGHM GK +V EH ++ AAR + +G +
Sbjct: 120 RFIRELISAGAKGVFLEDQV-WPKKCGHMRGKAVVPAEEHALKIAAAR---EAIGDSDFF 175
Query: 247 LVARTDAEA 255
LVARTDA A
Sbjct: 176 LVARTDARA 184
>pdb|1MUM|A Chain A, Structure Of The 2-Methylisocitrate Lyase (Prpb) From
Escherichia Coli
pdb|1MUM|B Chain B, Structure Of The 2-Methylisocitrate Lyase (Prpb) From
Escherichia Coli
pdb|1OQF|A Chain A, Crystal Structure Of The 2-Methylisocitrate Lyase
pdb|1OQF|B Chain B, Crystal Structure Of The 2-Methylisocitrate Lyase
Length = 295
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDV-MGVETV 246
+ K ++ GAAG+HIEDQ K+CGH K +V+ E ++R+ AA D + V
Sbjct: 98 RTVKSMIKAGAAGLHIEDQVG-AKRCGHRPNKAIVSKEEMVDRIRAA---VDAKTDPDFV 153
Query: 247 LVARTDAEA 255
++ARTDA A
Sbjct: 154 IMARTDALA 162
>pdb|1UJQ|A Chain A, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|B Chain B, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|C Chain C, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|D Chain D, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1O5Q|A Chain A, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|B Chain B, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|C Chain C, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|D Chain D, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
Length = 305
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDV-MGVETV 246
+ K + GAA +HIEDQ K+CGH K +V+ E ++R+ AA D V
Sbjct: 101 RTVKSIAKAGAAALHIEDQVG-AKRCGHRPNKAIVSKEEMVDRIRAA---VDARTDPNFV 156
Query: 247 LVARTDAEAATLIQTNVD 264
++ARTDA A ++ +D
Sbjct: 157 IMARTDALAVEGLEAALD 174
>pdb|4IQD|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQD|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQE|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
pdb|4IQE|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
Length = 305
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 194 VERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDA 253
VE A V IEDQ + KKCGH+ GK LV E + ++ A + + +VARTDA
Sbjct: 114 VEAKVAAVQIEDQQ-LPKKCGHLNGKKLVTTEELVQKIKAIK----EVAPSLYIVARTDA 168
>pdb|1XG3|A Chain A, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|B Chain B, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|C Chain C, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|D Chain D, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG4|A Chain A, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|B Chain B, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|C Chain C, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|D Chain D, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
Length = 295
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDV-MGVETV 246
+ K ++ GAAG+HIEDQ K+ GH K +V+ E ++R+ AA D + V
Sbjct: 98 RTVKSMIKAGAAGLHIEDQVG-AKRSGHRPNKAIVSKEEMVDRIRAA---VDAKTDPDFV 153
Query: 247 LVARTDAEA 255
++ARTDA A
Sbjct: 154 IMARTDALA 162
>pdb|3EOO|A Chain A, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|B Chain B, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|C Chain C, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|D Chain D, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|E Chain E, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|F Chain F, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|G Chain G, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|H Chain H, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|I Chain I, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|J Chain J, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|K Chain K, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|L Chain L, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|M Chain M, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|N Chain N, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|O Chain O, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|P Chain P, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
Length = 298
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 193 FVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVET-VLVART 251
F++ G VH+EDQ K+CGH GK V E ++R+ AA D ET V++ART
Sbjct: 107 FIKAGVGAVHLEDQVG-QKRCGHRPGKECVPAGEMVDRIKAA---VDARTDETFVIMART 162
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 38 RRPYSAR------DVVALRGSLRQS--YGSNEMAKKLWRTLKTHQA-NGTASRTFGALDP 88
++P+ A+ D +A G++ S G+ +M L R T A +G F +D
Sbjct: 95 QKPFIAKHGVTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPEATQAAPDGLVPEPFHTIDQ 154
Query: 89 VQVTMM-AKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQ 141
V M+ A D I + + + N+ P ++ P+D+ P + + FF +
Sbjct: 155 VLARMLDAGGFDEIETVXLLSAHSIAAANDVDPTISGLPFDSTPGQFDSQFFVE 208
>pdb|2ZE3|A Chain A, Crystal Structure Of Dfa0005 Complexed With
Alpha-Ketoglutarate: A Novel Member Of The IclPEPM
SUPERFAMILY FROM ALKALI-Tolerant Deinococcus Ficus
Length = 275
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVL 247
+ + F G AGV++ED + +T L + + R+ AAR D GV L
Sbjct: 96 RTVEHFAALGVAGVNLEDATGLTPTE-------LYDLDSQLRRIEAARAAIDASGVPVFL 148
Query: 248 VARTD 252
ARTD
Sbjct: 149 NARTD 153
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 295 GKTGAELQAIEDNWIAMAGL-KTFSECVIDAVNNLNTGEHEK---RRRLNEWMNLS---- 346
GK G ++Q + +W+A+ L K S V + N +G+ EK RRL E +L
Sbjct: 314 GKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYV 373
Query: 347 SYDKCLSSEQCREIAERLGL 366
+Y+ + +EQ +E+ E+L L
Sbjct: 374 AYEAAV-AEQVKELIEKLRL 392
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 295 GKTGAELQAIEDNWIAMAGL-KTFSECVIDAVNNLNTGEHEK---RRRLNEWMNLS---- 346
GK G ++Q + +W+A+ L K S V + N +G+ EK RRL E +L
Sbjct: 291 GKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYV 350
Query: 347 SYDKCLSSEQCREIAERLGL 366
+Y+ + +EQ +E+ E+L L
Sbjct: 351 AYEAAV-AEQVKELIEKLRL 369
>pdb|2QIW|A Chain A, Crystal Structure Of A Putative Phosphoenolpyruvate
Phosphonomutase (ncgl1015, Cgl1060) From Corynebacterium
Glutamicum Atcc 13032 At 1.80 A Resolution
pdb|2QIW|B Chain B, Crystal Structure Of A Putative Phosphoenolpyruvate
Phosphonomutase (ncgl1015, Cgl1060) From Corynebacterium
Glutamicum Atcc 13032 At 1.80 A Resolution
Length = 255
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 189 LCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLV 248
L +E GA G+++ED H GK + EH + + AAR DV GV+ V+
Sbjct: 98 LIAQILEAGAVGINVED-------VVHSEGKRVREAQEHADYIAAARQAADVAGVDVVIN 150
Query: 249 ARTDA 253
RTDA
Sbjct: 151 GRTDA 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,672,590
Number of Sequences: 62578
Number of extensions: 601925
Number of successful extensions: 1320
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 29
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)