Query 042063
Match_columns 575
No_of_seqs 278 out of 1406
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02892 isocitrate lyase 100.0 7E-184 2E-188 1471.2 56.7 569 2-575 2-570 (570)
2 PF00463 ICL: Isocitrate lyase 100.0 6E-184 1E-188 1461.7 36.4 526 21-551 1-526 (526)
3 TIGR01346 isocit_lyase isocitr 100.0 5E-178 1E-182 1420.3 49.8 525 22-551 1-527 (527)
4 COG2224 AceA Isocitrate lyase 100.0 4E-148 9E-153 1151.2 34.5 425 17-551 4-433 (433)
5 PRK15063 isocitrate lyase; Pro 100.0 7E-136 1E-140 1079.3 39.6 418 18-552 5-428 (428)
6 KOG1260 Isocitrate lyase [Ener 100.0 2E-134 4E-139 1055.2 33.0 487 16-551 2-492 (492)
7 PRK06498 isocitrate lyase; Pro 100.0 1E-127 3E-132 1018.6 39.5 459 18-552 4-531 (531)
8 TIGR02317 prpB methylisocitrat 100.0 8.4E-51 1.8E-55 415.9 26.0 247 68-495 3-252 (285)
9 PRK11320 prpB 2-methylisocitra 100.0 1.3E-50 2.9E-55 415.6 25.6 250 69-496 8-258 (292)
10 COG2513 PrpB PEP phosphonomuta 100.0 1.5E-49 3.2E-54 402.8 24.3 259 66-503 6-266 (289)
11 TIGR02319 CPEP_Pphonmut carbox 100.0 8.9E-48 1.9E-52 394.9 26.7 250 68-495 6-256 (294)
12 TIGR02321 Pphn_pyruv_hyd phosp 100.0 5.1E-46 1.1E-50 381.6 17.6 202 63-315 4-209 (290)
13 cd00377 ICL_PEPM Members of th 100.0 1.5E-44 3.2E-49 362.2 25.0 239 70-488 1-242 (243)
14 PF13714 PEP_mutase: Phosphoen 100.0 1.2E-44 2.6E-49 362.4 12.9 202 70-327 1-210 (238)
15 TIGR02320 PEP_mutase phosphoen 100.0 2.2E-42 4.7E-47 354.1 25.7 251 71-498 2-266 (285)
16 cd06556 ICL_KPHMT Members of t 100.0 4.5E-32 9.8E-37 272.2 18.9 226 66-492 1-230 (240)
17 cd06557 KPHMT-like Ketopantoat 99.8 1.9E-20 4.1E-25 189.8 12.5 177 69-315 3-197 (254)
18 PRK00311 panB 3-methyl-2-oxobu 99.8 4E-19 8.6E-24 181.1 14.1 178 69-315 6-200 (264)
19 TIGR00222 panB 3-methyl-2-oxob 99.5 2.6E-13 5.6E-18 138.4 13.7 172 70-307 7-193 (263)
20 PLN02424 ketopantoate hydroxym 99.2 8E-11 1.7E-15 123.3 14.4 152 69-274 26-196 (332)
21 PF02548 Pantoate_transf: Keto 95.9 0.042 9.2E-07 56.9 9.5 105 70-205 8-116 (261)
22 COG0413 PanB Ketopantoate hydr 94.3 0.54 1.2E-05 48.8 11.8 106 70-206 7-116 (268)
23 PF13714 PEP_mutase: Phosphoen 93.8 0.19 4.2E-06 51.3 7.5 87 385-490 150-237 (238)
24 PF09370 TIM-br_sig_trns: TIM- 91.7 1.5 3.3E-05 45.8 10.7 67 65-138 2-72 (268)
25 PRK00311 panB 3-methyl-2-oxobu 91.6 2.1 4.6E-05 44.6 11.7 160 188-426 26-196 (264)
26 PRK13398 3-deoxy-7-phosphohept 91.2 1.6 3.4E-05 45.4 10.2 151 75-236 88-261 (266)
27 cd06557 KPHMT-like Ketopantoat 90.3 3.5 7.6E-05 42.7 11.8 83 188-279 23-110 (254)
28 TIGR02321 Pphn_pyruv_hyd phosp 89.5 1.6 3.4E-05 46.0 8.7 228 189-494 27-257 (290)
29 PRK08673 3-deoxy-7-phosphohept 88.4 1.7 3.7E-05 46.8 8.1 165 69-242 148-333 (335)
30 cd00952 CHBPH_aldolase Trans-o 86.1 2.7 5.9E-05 44.2 8.1 113 179-318 24-142 (309)
31 cd04737 LOX_like_FMN L-Lactate 85.3 4.3 9.3E-05 43.9 9.2 86 77-206 221-307 (351)
32 cd02809 alpha_hydroxyacid_oxid 85.2 3.5 7.6E-05 43.1 8.3 39 67-105 161-201 (299)
33 TIGR02708 L_lactate_ox L-lacta 85.1 3.9 8.5E-05 44.6 8.8 96 67-206 217-314 (367)
34 PF05690 ThiG: Thiazole biosyn 84.4 3.6 7.8E-05 42.5 7.6 84 77-207 122-207 (247)
35 PLN02274 inosine-5'-monophosph 83.6 7.4 0.00016 44.1 10.5 106 65-210 275-386 (505)
36 PRK00208 thiG thiazole synthas 83.4 16 0.00034 38.1 11.8 108 77-238 122-231 (250)
37 cd00954 NAL N-Acetylneuraminic 81.2 5.2 0.00011 41.5 7.6 110 182-319 19-136 (288)
38 cd04728 ThiG Thiazole synthase 81.1 22 0.00048 37.0 11.9 114 70-238 116-231 (248)
39 TIGR00674 dapA dihydrodipicoli 80.1 6.4 0.00014 40.7 7.8 111 182-319 17-132 (285)
40 COG2876 AroA 3-deoxy-D-arabino 79.9 6.3 0.00014 41.4 7.5 64 170-235 215-278 (286)
41 PRK05198 2-dehydro-3-deoxyphos 79.4 7.4 0.00016 40.7 7.9 148 77-236 80-259 (264)
42 TIGR01362 KDO8P_synth 3-deoxy- 78.6 8.5 0.00018 40.2 8.0 146 78-235 73-250 (258)
43 cd00951 KDGDH 5-dehydro-4-deox 78.4 7 0.00015 40.7 7.5 109 182-318 19-132 (289)
44 TIGR03249 KdgD 5-dehydro-4-deo 78.2 7.3 0.00016 40.6 7.6 108 182-318 24-137 (296)
45 PRK13396 3-deoxy-7-phosphohept 78.1 7 0.00015 42.5 7.6 185 31-242 134-342 (352)
46 cd00381 IMPDH IMPDH: The catal 78.0 14 0.0003 39.4 9.7 27 78-104 136-163 (325)
47 PRK12457 2-dehydro-3-deoxyphos 77.0 9.9 0.00021 40.2 8.0 146 76-235 85-266 (281)
48 PRK04147 N-acetylneuraminate l 76.8 7.8 0.00017 40.3 7.3 110 182-319 22-138 (293)
49 cd03332 LMO_FMN L-Lactate 2-mo 76.3 12 0.00027 41.0 8.9 41 67-107 242-284 (383)
50 CHL00162 thiG thiamin biosynth 75.4 22 0.00048 37.3 9.9 84 77-207 136-221 (267)
51 PF00701 DHDPS: Dihydrodipicol 75.4 8.4 0.00018 39.8 7.1 112 182-320 20-136 (289)
52 cd00953 KDG_aldolase KDG (2-ke 74.6 11 0.00023 39.1 7.6 121 170-319 6-129 (279)
53 cd00950 DHDPS Dihydrodipicolin 74.5 11 0.00023 38.8 7.6 111 182-319 19-134 (284)
54 PRK11197 lldD L-lactate dehydr 73.5 11 0.00023 41.5 7.5 31 76-106 244-275 (381)
55 PLN02417 dihydrodipicolinate s 73.2 14 0.00031 38.3 8.1 110 182-319 20-133 (280)
56 cd02810 DHOD_DHPD_FMN Dihydroo 72.4 61 0.0013 33.3 12.5 35 170-205 163-197 (289)
57 TIGR01361 DAHP_synth_Bsub phos 72.4 12 0.00025 38.9 7.2 162 70-235 81-258 (260)
58 cd00408 DHDPS-like Dihydrodipi 72.0 17 0.00036 37.2 8.2 110 182-319 16-131 (281)
59 TIGR01305 GMP_reduct_1 guanosi 71.5 41 0.00088 36.6 11.1 97 68-205 142-242 (343)
60 PRK03620 5-dehydro-4-deoxygluc 71.3 13 0.00029 38.9 7.5 109 182-318 26-139 (303)
61 cd04740 DHOD_1B_like Dihydroor 70.2 71 0.0015 33.0 12.5 35 166-205 153-187 (296)
62 PRK12595 bifunctional 3-deoxy- 70.1 17 0.00037 39.5 8.1 152 76-236 180-352 (360)
63 PRK06843 inosine 5-monophospha 70.1 30 0.00065 38.4 10.1 27 77-103 194-221 (404)
64 TIGR00737 nifR3_yhdG putative 70.1 57 0.0012 34.4 11.9 38 165-204 129-167 (319)
65 TIGR01303 IMP_DH_rel_1 IMP deh 69.8 27 0.00059 39.4 9.9 106 65-207 252-360 (475)
66 TIGR00683 nanA N-acetylneurami 69.8 19 0.00041 37.6 8.2 111 182-319 19-136 (290)
67 PLN02535 glycolate oxidase 68.2 18 0.00038 39.6 7.8 41 67-107 212-254 (364)
68 TIGR00736 nifR3_rel_arch TIM-b 67.7 56 0.0012 33.5 10.8 34 170-204 135-168 (231)
69 PRK03170 dihydrodipicolinate s 67.1 19 0.00041 37.3 7.5 110 182-318 20-134 (292)
70 TIGR01306 GMP_reduct_2 guanosi 67.0 39 0.00085 36.3 9.9 88 79-207 139-230 (321)
71 cd04729 NanE N-acetylmannosami 66.9 41 0.00089 33.3 9.6 94 67-204 112-206 (219)
72 PLN03033 2-dehydro-3-deoxyphos 66.7 21 0.00046 37.8 7.7 148 77-236 86-270 (290)
73 PLN02493 probable peroxisomal 66.7 21 0.00046 39.0 8.0 32 76-107 223-255 (367)
74 PRK10605 N-ethylmaleimide redu 65.7 15 0.00033 39.7 6.7 55 419-475 213-270 (362)
75 cd02940 DHPD_FMN Dihydropyrimi 65.3 30 0.00064 36.2 8.6 75 170-253 169-261 (299)
76 PF01037 AsnC_trans_reg: AsnC 64.9 11 0.00024 30.1 4.2 58 406-465 1-61 (74)
77 PRK06801 hypothetical protein; 64.6 1.1E+02 0.0024 32.4 12.6 119 66-243 6-129 (286)
78 PF01070 FMN_dh: FMN-dependent 64.6 18 0.00039 39.2 7.0 85 76-204 224-309 (356)
79 cd02801 DUS_like_FMN Dihydrour 63.5 39 0.00085 33.2 8.6 37 170-206 124-160 (231)
80 TIGR01302 IMP_dehydrog inosine 62.9 52 0.0011 36.7 10.3 28 77-104 265-293 (450)
81 PF13625 Helicase_C_3: Helicas 62.8 11 0.00023 34.6 4.2 59 406-465 10-71 (129)
82 PRK15063 isocitrate lyase; Pro 62.8 2.6 5.7E-05 46.7 0.2 64 242-318 244-312 (428)
83 PRK05458 guanosine 5'-monophos 62.7 72 0.0016 34.4 10.9 63 42-105 98-169 (326)
84 PLN02424 ketopantoate hydroxym 62.1 72 0.0016 34.7 10.7 77 187-270 45-122 (332)
85 PRK07259 dihydroorotate dehydr 61.7 45 0.00097 34.7 9.1 35 166-205 156-190 (301)
86 PRK07807 inosine 5-monophospha 61.5 31 0.00067 39.0 8.3 104 64-207 253-362 (479)
87 PRK05567 inosine 5'-monophosph 60.3 39 0.00084 38.0 8.8 39 65-104 258-297 (486)
88 KOG3115 Methyltransferase-like 60.3 4.6 9.9E-05 41.2 1.4 66 171-254 62-127 (249)
89 TIGR00222 panB 3-methyl-2-oxob 59.8 1.5E+02 0.0033 31.2 12.4 49 188-238 26-74 (263)
90 TIGR02313 HpaI-NOT-DapA 2,4-di 59.6 39 0.00084 35.4 8.2 111 182-319 19-135 (294)
91 PLN02979 glycolate oxidase 59.1 36 0.00078 37.3 8.0 32 76-107 222-254 (366)
92 PTZ00314 inosine-5'-monophosph 57.9 46 0.001 37.7 8.9 93 77-209 282-378 (495)
93 PRK13397 3-deoxy-7-phosphohept 57.1 30 0.00065 36.0 6.7 148 77-235 78-248 (250)
94 PRK08255 salicylyl-CoA 5-hydro 56.7 57 0.0012 38.7 9.8 54 418-474 604-658 (765)
95 TIGR01037 pyrD_sub1_fam dihydr 56.0 62 0.0014 33.6 9.0 33 170-205 158-190 (300)
96 PF04131 NanE: Putative N-acet 55.9 68 0.0015 32.3 8.7 137 20-203 22-172 (192)
97 PRK07998 gatY putative fructos 55.4 2.4E+02 0.0053 29.9 13.2 120 66-244 6-130 (283)
98 PRK07315 fructose-bisphosphate 54.2 2.6E+02 0.0056 29.7 13.2 122 66-245 6-133 (293)
99 COG0329 DapA Dihydrodipicolina 53.9 47 0.001 35.1 7.7 77 182-274 23-100 (299)
100 COG2022 ThiG Uncharacterized e 53.2 75 0.0016 33.2 8.7 84 77-207 129-214 (262)
101 PRK13399 fructose-1,6-bisphosp 52.8 3.2E+02 0.007 29.9 13.9 126 66-243 6-137 (347)
102 PRK08318 dihydropyrimidine deh 52.7 87 0.0019 34.3 9.8 37 166-207 167-203 (420)
103 PRK06806 fructose-bisphosphate 52.5 3E+02 0.0064 29.0 13.3 120 66-244 6-130 (281)
104 PRK09485 mmuM homocysteine met 52.2 17 0.00037 38.3 4.1 65 395-464 145-212 (304)
105 TIGR01859 fruc_bis_ald_ fructo 52.2 2.7E+02 0.0058 29.3 12.9 120 66-243 4-129 (282)
106 PF00793 DAHP_synth_1: DAHP sy 51.9 9 0.00019 40.0 2.0 120 78-207 88-237 (270)
107 PRK08185 hypothetical protein; 51.8 2.4E+02 0.0053 29.9 12.5 119 67-245 2-125 (283)
108 PRK11840 bifunctional sulfur c 51.1 1.1E+02 0.0023 33.3 9.8 32 170-207 250-281 (326)
109 PRK13523 NADPH dehydrogenase N 50.5 1.2E+02 0.0027 32.5 10.3 207 186-475 39-248 (337)
110 COG1902 NemA NADH:flavin oxido 50.4 1.3E+02 0.0027 33.0 10.5 121 294-477 137-263 (363)
111 TIGR02151 IPP_isom_2 isopenten 50.2 84 0.0018 33.6 9.0 33 166-204 178-210 (333)
112 PRK05096 guanosine 5'-monophos 50.0 99 0.0021 33.8 9.4 100 68-208 143-246 (346)
113 COG0352 ThiE Thiamine monophos 49.2 54 0.0012 33.2 7.0 70 170-254 8-77 (211)
114 cd02922 FCB2_FMN Flavocytochro 47.4 1.3E+02 0.0028 32.6 10.0 41 67-107 202-244 (344)
115 cd00945 Aldolase_Class_I Class 46.6 21 0.00046 33.5 3.5 33 172-204 1-33 (201)
116 cd04736 MDH_FMN Mandelate dehy 46.4 1.7E+02 0.0036 32.2 10.6 31 77-107 236-267 (361)
117 KOG2949 Ketopantoate hydroxyme 46.3 76 0.0017 33.1 7.5 67 68-139 28-95 (306)
118 cd04730 NPD_like 2-Nitropropan 45.1 1.3E+02 0.0028 29.7 8.9 85 79-207 103-188 (236)
119 PRK07107 inosine 5-monophospha 44.9 91 0.002 35.5 8.7 108 69-207 276-384 (502)
120 COG0646 MetH Methionine syntha 44.5 61 0.0013 34.8 6.7 91 403-494 157-286 (311)
121 cd00564 TMP_TenI Thiamine mono 44.1 2.7E+02 0.0059 26.0 10.6 86 78-207 95-181 (196)
122 cd06808 PLPDE_III Type III Pyr 43.9 79 0.0017 30.2 7.0 87 413-504 88-174 (211)
123 cd02808 GltS_FMN Glutamate syn 43.6 2.1E+02 0.0045 31.4 10.9 65 43-107 171-248 (392)
124 PLN02489 homocysteine S-methyl 43.3 29 0.00063 37.3 4.3 33 400-433 178-210 (335)
125 PRK01130 N-acetylmannosamine-6 43.2 2.3E+02 0.0049 28.0 10.3 86 78-207 119-205 (221)
126 TIGR03151 enACPred_II putative 43.0 95 0.0021 32.9 8.0 113 78-250 109-222 (307)
127 PRK05286 dihydroorotate dehydr 42.9 1.5E+02 0.0032 31.9 9.5 37 170-207 212-248 (344)
128 PF09762 KOG2701: Coiled-coil 42.8 14 0.0003 36.7 1.6 54 384-440 27-80 (182)
129 TIGR01949 AroFGH_arch predicte 42.5 81 0.0018 32.2 7.2 71 170-252 71-146 (258)
130 cd00331 IGPS Indole-3-glycerol 42.3 31 0.00067 34.0 4.0 38 170-207 11-54 (217)
131 PRK10415 tRNA-dihydrouridine s 41.3 1.6E+02 0.0034 31.4 9.3 41 165-207 131-172 (321)
132 TIGR02320 PEP_mutase phosphoen 41.0 1.2E+02 0.0026 32.0 8.3 35 170-204 153-189 (285)
133 PF00478 IMPDH: IMP dehydrogen 40.9 63 0.0014 35.3 6.4 100 68-208 141-244 (352)
134 cd04739 DHOD_like Dihydroorota 40.5 3.2E+02 0.0069 29.1 11.5 38 165-207 161-198 (325)
135 PLN02591 tryptophan synthase 39.8 1.1E+02 0.0024 31.7 7.7 33 166-206 188-220 (250)
136 COG2877 KdsA 3-deoxy-D-manno-o 39.8 1.1E+02 0.0023 32.2 7.4 63 170-234 191-264 (279)
137 PRK05437 isopentenyl pyrophosp 39.7 2.6E+02 0.0057 30.2 10.8 30 170-203 187-216 (352)
138 cd06556 ICL_KPHMT Members of t 39.2 46 0.001 34.2 4.8 77 188-271 23-99 (240)
139 cd02931 ER_like_FMN Enoate red 38.9 2.2E+02 0.0048 31.1 10.2 117 294-474 138-272 (382)
140 cd00564 TMP_TenI Thiamine mono 38.1 1.2E+02 0.0025 28.5 7.1 24 184-207 12-35 (196)
141 PRK12825 fabG 3-ketoacyl-(acyl 37.6 2.3E+02 0.0051 27.0 9.2 107 403-514 56-182 (249)
142 cd04741 DHOD_1A_like Dihydroor 36.6 1.7E+02 0.0036 30.7 8.6 36 166-204 156-193 (294)
143 TIGR01304 IMP_DH_rel_2 IMP deh 36.5 5.3E+02 0.011 28.4 12.6 88 170-277 189-281 (369)
144 PF00456 Transketolase_N: Tran 36.5 76 0.0017 34.2 6.1 151 170-366 175-329 (332)
145 COG0021 TktA Transketolase [Ca 36.4 2.7E+02 0.0059 33.0 10.7 109 172-326 189-297 (663)
146 cd06810 PLPDE_III_ODC_DapDC_li 36.3 59 0.0013 34.4 5.2 60 414-478 99-169 (368)
147 TIGR03551 F420_cofH 7,8-dideme 36.0 2.8E+02 0.0062 29.5 10.3 118 413-535 14-174 (343)
148 PF04695 Pex14_N: Peroxisomal 35.8 1E+02 0.0022 28.9 6.1 44 266-312 8-51 (136)
149 PRK09234 fbiC FO synthase; Rev 35.8 1.2E+02 0.0026 36.8 8.2 181 369-551 449-697 (843)
150 PRK07534 methionine synthase I 35.4 77 0.0017 34.1 6.0 28 400-428 142-169 (336)
151 cd04726 KGPDC_HPS 3-Keto-L-gul 34.9 3.9E+02 0.0085 25.6 10.3 30 170-206 159-188 (202)
152 cd07945 DRE_TIM_CMS Leptospira 34.7 1.1E+02 0.0023 32.1 6.7 54 170-236 129-187 (280)
153 CHL00200 trpA tryptophan synth 34.0 2.3E+02 0.005 29.6 9.0 32 166-205 201-232 (263)
154 cd02811 IDI-2_FMN Isopentenyl- 32.9 2E+02 0.0044 30.6 8.6 39 68-106 168-211 (326)
155 cd07948 DRE_TIM_HCS Saccharomy 32.1 1.2E+02 0.0027 31.4 6.6 56 170-237 126-182 (262)
156 PRK00043 thiE thiamine-phospha 32.0 4.7E+02 0.01 25.1 10.7 137 45-235 75-212 (212)
157 cd00951 KDGDH 5-dehydro-4-deox 31.4 2.2E+02 0.0049 29.6 8.5 67 170-253 70-136 (289)
158 PRK09261 phospho-2-dehydro-3-d 31.4 1.2E+02 0.0026 33.3 6.5 38 170-207 261-306 (349)
159 COG2513 PrpB PEP phosphonomuta 31.1 72 0.0016 34.0 4.7 63 120-206 125-188 (289)
160 PLN02898 HMP-P kinase/thiamin- 31.0 1.2E+02 0.0026 34.1 6.8 67 172-254 295-363 (502)
161 PRK08649 inosine 5-monophospha 31.0 2.6E+02 0.0055 30.7 9.1 37 65-104 178-215 (368)
162 PRK05437 isopentenyl pyrophosp 30.7 2.7E+02 0.0059 30.1 9.2 41 67-107 175-220 (352)
163 cd00954 NAL N-Acetylneuraminic 30.3 1.5E+02 0.0033 30.7 7.0 64 169-247 70-133 (288)
164 cd02811 IDI-2_FMN Isopentenyl- 30.1 6.8E+02 0.015 26.7 12.0 32 166-203 177-208 (326)
165 TIGR00262 trpA tryptophan synt 30.1 3.1E+02 0.0067 28.3 9.1 29 170-204 199-227 (256)
166 PRK14461 ribosomal RNA large s 29.9 74 0.0016 35.0 4.8 52 414-467 285-343 (371)
167 COG0167 PyrD Dihydroorotate de 29.5 4E+02 0.0086 28.8 10.0 81 170-264 162-255 (310)
168 COG0820 Predicted Fe-S-cluster 29.2 84 0.0018 34.4 5.0 51 415-468 270-322 (349)
169 PF01207 Dus: Dihydrouridine s 29.0 80 0.0017 33.4 4.7 40 166-207 121-161 (309)
170 PRK04147 N-acetylneuraminate l 28.9 1.7E+02 0.0037 30.4 7.1 63 170-248 74-136 (293)
171 KOG2046 Calponin [Cytoskeleton 28.8 42 0.0009 33.8 2.4 49 421-474 58-110 (193)
172 cd02930 DCR_FMN 2,4-dienoyl-Co 28.7 1.4E+02 0.003 32.1 6.5 211 185-478 34-249 (353)
173 cd02932 OYE_YqiM_FMN Old yello 28.2 3.7E+02 0.0079 28.6 9.6 92 88-203 157-260 (336)
174 cd04724 Tryptophan_synthase_al 27.7 4.1E+02 0.009 27.0 9.5 80 178-264 8-98 (242)
175 TIGR02810 agaZ_gatZ D-tagatose 26.0 78 0.0017 35.4 4.1 53 448-500 57-114 (420)
176 TIGR01036 pyrD_sub2 dihydrooro 25.7 5.3E+02 0.011 27.7 10.2 54 170-224 211-273 (335)
177 PLN02746 hydroxymethylglutaryl 25.5 1.7E+02 0.0037 31.9 6.6 44 182-237 195-238 (347)
178 PLN02374 pyruvate dehydrogenas 25.4 2.9E+02 0.0062 31.1 8.4 71 168-254 250-327 (433)
179 cd07944 DRE_TIM_HOA_like 4-hyd 24.8 2.8E+02 0.006 28.7 7.7 57 170-238 123-180 (266)
180 PRK14466 ribosomal RNA large s 24.1 1.3E+02 0.0027 32.9 5.2 51 414-467 264-316 (345)
181 cd04738 DHOD_2_like Dihydrooro 24.1 3E+02 0.0065 29.3 8.0 128 116-291 167-309 (327)
182 TIGR01859 fruc_bis_ald_ fructo 24.0 3.4E+02 0.0074 28.5 8.3 32 170-206 201-232 (282)
183 PF11619 P53_C: Transcription 24.0 18 0.00039 30.5 -0.9 16 371-386 5-20 (71)
184 cd06839 PLPDE_III_Btrk_like Ty 23.5 3.4E+02 0.0075 28.8 8.4 32 443-478 145-176 (382)
185 PRK15458 tagatose 6-phosphate 23.5 1.1E+02 0.0023 34.4 4.5 53 448-500 61-118 (426)
186 cd00952 CHBPH_aldolase Trans-o 23.1 2.7E+02 0.0058 29.4 7.3 64 170-248 78-141 (309)
187 cd02068 radical_SAM_B12_BD B12 22.8 2.2E+02 0.0048 25.4 5.9 54 389-444 27-82 (127)
188 PRK08645 bifunctional homocyst 22.8 1.7E+02 0.0036 34.1 6.2 38 400-438 136-174 (612)
189 TIGR02313 HpaI-NOT-DapA 2,4-di 22.6 2.9E+02 0.0063 28.9 7.5 102 95-248 32-133 (294)
190 PRK14041 oxaloacetate decarbox 22.6 5.1E+02 0.011 29.5 9.7 45 182-238 151-195 (467)
191 TIGR03699 mena_SCO4550 menaqui 22.1 6.7E+02 0.015 26.5 10.2 81 413-494 15-118 (340)
192 TIGR00603 rad25 DNA repair hel 22.1 89 0.0019 37.4 3.9 60 405-464 24-87 (732)
193 TIGR03249 KdgD 5-dehydro-4-deo 22.1 4.1E+02 0.0088 27.7 8.4 66 170-252 75-140 (296)
194 cd03316 MR_like Mandelate race 22.0 5.6E+02 0.012 27.0 9.6 79 170-264 127-207 (357)
195 cd00377 ICL_PEPM Members of th 21.6 1.7E+02 0.0037 29.9 5.4 141 57-250 52-204 (243)
196 PLN02321 2-isopropylmalate syn 21.3 3.2E+02 0.007 32.2 8.1 54 172-237 227-281 (632)
197 cd06589 GH31 The enzymes of gl 21.2 3.6E+02 0.0077 27.6 7.6 33 442-476 58-90 (265)
198 PRK12755 phospho-2-dehydro-3-d 21.2 2.4E+02 0.0051 31.0 6.5 38 170-207 262-307 (353)
199 cd00408 DHDPS-like Dihydrodipi 21.2 4.5E+02 0.0098 26.8 8.4 99 96-247 30-128 (281)
200 cd02911 arch_FMN Archeal FMN-b 21.1 1.8E+02 0.0039 29.6 5.4 33 170-204 140-172 (233)
201 COG0119 LeuA Isopropylmalate/h 21.1 2.1E+02 0.0045 31.9 6.2 59 167-237 128-187 (409)
202 cd04733 OYE_like_2_FMN Old yel 21.1 2.7E+02 0.0059 29.6 7.0 54 418-472 202-256 (338)
203 PRK14462 ribosomal RNA large s 20.8 1.7E+02 0.0037 32.0 5.4 52 414-468 277-330 (356)
204 PRK12738 kbaY tagatose-bisphos 20.8 1E+03 0.022 25.3 13.1 119 66-243 6-129 (286)
205 PF01729 QRPTase_C: Quinolinat 20.8 2.3E+02 0.0049 27.7 5.8 85 379-480 56-140 (169)
206 PF04309 G3P_antiterm: Glycero 20.6 21 0.00047 35.2 -1.3 53 118-204 116-169 (175)
207 TIGR00762 DegV EDD domain prot 20.5 7E+02 0.015 25.7 9.7 124 288-442 128-262 (275)
208 PRK03620 5-dehydro-4-deoxygluc 20.5 4.7E+02 0.01 27.5 8.5 66 170-252 77-142 (303)
209 PRK07328 histidinol-phosphatas 20.4 3.2E+02 0.0069 28.0 7.1 132 375-516 10-160 (269)
210 PRK09490 metH B12-dependent me 20.4 4.5E+02 0.0098 33.6 9.5 94 400-494 175-305 (1229)
211 PLN02826 dihydroorotate dehydr 20.2 3.2E+02 0.0069 30.5 7.4 94 170-278 263-368 (409)
212 PRK06801 hypothetical protein; 20.1 4.9E+02 0.011 27.6 8.5 32 166-204 202-233 (286)
213 cd06840 PLPDE_III_Bif_AspK_Dap 20.1 1.1E+02 0.0023 33.0 3.7 41 425-465 117-169 (368)
No 1
>PLN02892 isocitrate lyase
Probab=100.00 E-value=7.3e-184 Score=1471.23 Aligned_cols=569 Identities=86% Similarity=1.325 Sum_probs=542.0
Q ss_pred CCCCCCCcchhHHhhhHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHhhCCccccCCchHHHHHHHHHHHhhhhCCCcee
Q 042063 2 AASYSVPSMILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWRTLKTHQANGTASR 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~i~~ww~~~R~~~i~R~Yta~~v~~~rgs~~~~y~~~~~A~kL~~lL~~~~~~~~~l~ 81 (575)
++..+.++....|+..|+++|++|++||++|||++|+|||||+||++||||++++|||+.+|+|||++|+++++++++++
T Consensus 2 ~~~~~~~~~~~~e~~~~~~~v~~ie~~w~~pR~~~ikRpYta~dV~~lRGs~~~~y~s~~~A~kLw~lL~~~~~~~~~~~ 81 (570)
T PLN02892 2 AASFSVPSMIMEEEGRFEAEVAEVEAWWRSERFKLTRRPYSARDVAALRGTLKQSYASNEMAKKLWRTLKTHQANGTASR 81 (570)
T ss_pred CcccCCccccchHHHHHHHHHHHHHHhhcChhhcCCcCCCCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhhccCCcee
Confidence 34444444456689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHccCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhh
Q 042063 82 TFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERA 161 (575)
Q Consensus 82 ~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~ 161 (575)
++||+||+||+||++|+++||+|||+||++++++++++||+++||+++||++|+||++||+||||||+++|+++++++|+
T Consensus 82 t~Galdp~Q~~Qm~k~l~~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~q~~~r~~~~~~~r~ 161 (570)
T PLN02892 82 TFGALDPVQVAQMAKHLDTIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRKQREARMSMSREERA 161 (570)
T ss_pred eccCCcHHHHHHHHccCceEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHHHhccCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhc
Q 042063 162 RTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVM 241 (575)
Q Consensus 162 ~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~ 241 (575)
.++.+||++|||||+|+|||++++++++||+||++||+|||||||.+++|||||++||+|+|++||++||+|||.++|++
T Consensus 162 ~~~~~Dyl~PIiADaEtGyG~~~~~~~~vk~~ieaGAaGIhIEDQ~~~~KkCGh~~gk~Lvp~~e~v~RI~AAR~aad~~ 241 (570)
T PLN02892 162 RTPYVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMGGKVLVATSEHINRLVAARLQFDVM 241 (570)
T ss_pred CCCccccccceeeecCCCCCccHHHHHHHHHHHHcCCeEEEEECCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHH
Q 042063 242 GVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECV 321 (575)
Q Consensus 242 g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~ 321 (575)
|+|||||||||++++++|+++||+|||+||.|+|||.++..|++|.+..+++.|+++++|..++++|.++++|+||+|+|
T Consensus 242 G~d~vI~ARTDA~~a~Lits~iD~RDh~FI~Gat~~~~~~~~l~~~~~~a~~~g~~g~~l~~~e~~W~~~a~l~tf~eav 321 (570)
T PLN02892 242 GVETVLVARTDAVAATLIQSNIDARDHQFILGATNPALRGKPLATLLAEAMAAGKSGAELQAIEDEWLAQAQLMTFSEAV 321 (570)
T ss_pred CCCeEEEEecCchhcccchhhhccccccceeeecCCccccCCHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCccHHHHH
Confidence 99999999999999999999999999999999999999434999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCC
Q 042063 322 IDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAP 401 (575)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~ap 401 (575)
.++++.+..+...+...+.+|..... .++||++||++|+++.|.+|+||||+|||+|||||||||+++||+|+++|||
T Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~s~~e~r~lA~~~~~~~v~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~A~AP 399 (570)
T PLN02892 322 ADAIKSMNISENEKRRRLNEWMASVP--KCLSNEQARRIAAKLGVANVFWDWDLPRTREGFYRFRGSVKACIVRGRAFAP 399 (570)
T ss_pred HHHHHhcccccchhHHHHHHHHhhcc--ccCCHHHHHHHHHHhCCCCCcccCCCCcCcccceeeCCChHHHHHHHHhccc
Confidence 99997543344456667788888754 5899999999999999999999999999999999999999999999999999
Q ss_pred cCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhh
Q 042063 402 HADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADAL 481 (575)
Q Consensus 402 yaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~ 481 (575)
|||||||||++|||+||++||++||++||++||||||||||||+++||+|++|++||+|||+||||||||||||||++|+
T Consensus 400 yaDliW~ET~~Pdl~~A~~Fa~~V~~~~P~k~LaYNlSPSFNW~~~g~~d~~i~~F~~dLaklGy~~QfITLaG~H~~~~ 479 (570)
T PLN02892 400 YADLIWMETASPDLAEATKFAEGVKAKHPEIMLAYNLSPSFNWDASGMTDEQMAEFIPRLARLGYCWQFITLAGFHANAL 479 (570)
T ss_pred ccCEEEecCCCCCHHHHHHHHHHHHHhCCCCeeeecCCCCcCCCCCCCCHHHHHHHHHHHHhcCceEEEEchHhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCccccccccCchhHHHHHHHhcCCcchhhcCCCCchhhhhhhhhcCCCCc
Q 042063 482 VVDTFAKDYARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQFKETWTRPGAT 561 (575)
Q Consensus 482 ~~~~la~~~~~~GM~aYv~~vQ~~E~~~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~~te~qf~~~~~~~~~~ 561 (575)
+|++||++|+++||+|||+.|||+|++.|||+++||||||++|+|.++++|+||+|||+|||+|+||+||+.++...+..
T Consensus 480 ~~~~lA~~~~~~GM~AYve~vQ~~E~~~g~~~~~HQ~wsGa~y~D~~~~~v~gG~sst~Am~~~~te~QF~~~~~~~~~~ 559 (570)
T PLN02892 480 VVDTFARDYARRGMLAYVERIQRQERTNGVETLAHQKWSGANYYDRYLKTVQGGISSTAAMGKGVTEEQFKETWTRPGAE 559 (570)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCeeeccccccccHHHHHHHHhcCchhhhhhccCCCcHHHHhhhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777655553
Q ss_pred ccCCCceeeeeccC
Q 042063 562 NINNGSTVVAKARM 575 (575)
Q Consensus 562 ~~~~~~~~~~~~~~ 575 (575)
+++.|+++.||
T Consensus 560 ---~~~~~~~~~~~ 570 (570)
T PLN02892 560 ---GGSEVVAKSRM 570 (570)
T ss_pred ---ccceeeecccC
Confidence 67888888876
No 2
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=100.00 E-value=5.8e-184 Score=1461.68 Aligned_cols=526 Identities=61% Similarity=0.978 Sum_probs=452.2
Q ss_pred HHHHHHHhhccCCCCCCCCCCCHHHHHHhhCCccccCCchHHHHHHHHHHHhhhhCCCceeecCCCCHHHHHHHHccCCe
Q 042063 21 EVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAKHLDS 100 (575)
Q Consensus 21 ~~~~i~~ww~~~R~~~i~R~Yta~~v~~~rgs~~~~y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~gf~A 100 (575)
||++|++||.+|||++|+|||||+||+++|||++++||++.+|+|||++|++..+++.+..+.|+.||.++.||++|+++
T Consensus 1 ~v~~i~~ww~~pR~~~i~R~Yta~dV~~~Rgs~~~~y~s~~~a~kLw~ll~~~~~~~~~~~t~g~~~p~~~~q~~~~l~~ 80 (526)
T PF00463_consen 1 EVEEIEKWWASPRWKGIKRPYTAEDVVKLRGSLPIEYPSSIQAKKLWKLLEEHFKNGYVSHTGGATDPQQVQQMAKGLEA 80 (526)
T ss_dssp HHHHHHHHHTSGGGTT---SS-HHHHHHHTTSS---HHHHHHHHHHHHHHHHTSSSSSEEEEBBSSHHHHHHHHHCT-SS
T ss_pred ChHHHHHHhcCccccCCCCCCCHHHHHHhccCCCCCChHHHHHHHHHHHHHhhhhcCCcceecccccHHHHHHHHhcCCe
Confidence 68999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred EeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCC
Q 042063 101 IYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGF 180 (575)
Q Consensus 101 Iy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGf 180 (575)
||+|||+||++++++++++||+++||+++||++|+||++||++|||||+++|+++++++|++.+.+||++|||||+|+||
T Consensus 81 iYvSGWq~ss~~s~~~e~~PD~s~YP~~tVP~~V~ri~~aq~~~D~~q~~~~~~~~~~~r~~~~~~Dyl~PIIADad~Gf 160 (526)
T PF00463_consen 81 IYVSGWQCSSDASTSNEPYPDQSDYPYDTVPNKVERIFNAQLRHDRKQWEERLSMTKEERAKTPYIDYLRPIIADADAGF 160 (526)
T ss_dssp EEE-HHHHHHHS-TT-S--SSSS-S-TTHHHHHHHHHHHHHHHHHHHHHHCTCSTTSTTHTTS--S-SS--EEEE-TTTS
T ss_pred EEeeceeeecccccCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHhcccccchhhcccCcccceeeeeeccccCC
Confidence 99999999999899999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred CCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchH
Q 042063 181 GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQ 260 (575)
Q Consensus 181 Gg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~ 260 (575)
||+++|++|+|.|||+||||||||||+++.|||||++||||||++||++||.|||+|+|+||+|+||||||||+++++|+
T Consensus 161 GG~~~v~kL~K~fiEaGaAgiH~EDQ~~~~KKCGH~~GKVlVPt~e~i~rL~AaRl~~Dimg~~~liiARTDa~~A~Lit 240 (526)
T PF00463_consen 161 GGLTAVMKLTKLFIEAGAAGIHFEDQLSGEKKCGHMGGKVLVPTSEHINRLVAARLQADIMGVPTLIIARTDAEAATLIT 240 (526)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEESB-GGG-B-STTSBEEE--HHHHHHHHHHHHHHHHHHT---EEEEEE-TTTEEEES
T ss_pred CCHHHHHHHHHHHHhcCCceechhhccccccceeccCCcEEecHHHHHHHHHHHHHHHHHhCCCcEEEEeechhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhHHHHH
Q 042063 261 TNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLN 340 (575)
Q Consensus 261 ~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~ 340 (575)
++||+|||+||.|+|||+++ |++|.+..|+++|++++||.+++++|.++++|+||+|||+++++++ ++..+.+.++
T Consensus 241 s~iD~rDh~fi~G~~~~~~~--pl~~~l~~ae~~G~~g~ei~~~E~~W~~~A~L~TFdEAV~~~i~~~--~~~~k~~~~~ 316 (526)
T PF00463_consen 241 SDIDPRDHPFILGATNPEVK--PLAEVLAEAEAAGASGAEIQAIEDEWYKKAGLMTFDEAVEDAIKAS--EYSNKKSRIE 316 (526)
T ss_dssp -TTSCCCGGGEEEEE-TTS----HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHHHHHHHHHTS--S-S-HHHHHH
T ss_pred cCccccccchhcCCCCCCCc--cHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeEHHHHHHHHHHhc--cccchHHHHH
Confidence 99999999999999999998 9999999999999999999999999999999999999999999886 4667788899
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHh
Q 042063 341 EWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTK 420 (575)
Q Consensus 341 ~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~ 420 (575)
+|++++.+.+++|+++||++|++++|.+||||||+|||+||||+||||+++||+|++|||||||||||||++||++||++
T Consensus 317 ~~~~~~~~~~~~S~~eaR~lAk~l~g~~vfFDWD~pRt~EG~Y~~k~g~~~aI~Ra~A~aPyADllW~ET~~Pd~~~a~~ 396 (526)
T PF00463_consen 317 EYLSKVKGKSFLSLREARALAKELLGKDVFFDWDAPRTREGYYRFKGGTEAAIARALAFAPYADLLWMETKTPDLAQAKE 396 (526)
T ss_dssp HHHHHHTT--HH---HHHHHHHHHHSS--GBBTTTCE-TTS-EEE--SHHHHHHHHHHHGGG-SEEEE--SS--HHHHHH
T ss_pred HHHHHccccCcccHHHHHHHHHHhcCCCceEecccccChhhchhcCCChHHHHHHHHhhCcccCeeeEecCCCCHHHHHH
Confidence 99999987778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhhhHHHHHHHHHHhhHHHHHH
Q 042063 421 FAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRGMLAYVE 500 (575)
Q Consensus 421 Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~~~~~GM~aYv~ 500 (575)
||++||++||++||||||||||||+++ |++++|++|||||+|||||||||||||||++|++|++|||+|+++||+|||+
T Consensus 397 Fa~~V~~~~P~k~LaYNlSPSFNW~~~-~~~~ei~~F~~dLak~G~~~QfItLaG~H~~~~~~~~lAk~y~~~GM~AYv~ 475 (526)
T PF00463_consen 397 FAEGVHAVYPGKKLAYNLSPSFNWDAA-GSDDEIKSFQWDLAKLGYVWQFITLAGFHSLALSMFELAKDYKKEGMLAYVE 475 (526)
T ss_dssp HHHHHHHHSTT-EEEEEE-SSSTHHHH-S-HHHHHHHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhCCcceEEecCCcccchhhh-hhhhHHHHHHHHHHhhhHheeeeeHHHHHHhHHHHHHHHHHHHHcCHHHHHH
Confidence 999999999999999999999999999 5666799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccCchhHHHHHHHhcCCcchhhcCCCCchhhhh
Q 042063 501 RIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQF 551 (575)
Q Consensus 501 ~vQ~~E~~~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~~te~qf 551 (575)
+|||+|+++|||+++||||||++|+|+++++|+||+|||+|||+|+||+||
T Consensus 476 ~vQr~e~~~g~~~l~HQkwsGa~y~D~~~~~v~gg~sst~a~g~~~te~QF 526 (526)
T PF00463_consen 476 LVQREERENGVDVLTHQKWSGAGYFDSVLQTVQGGSSSTAAMGGSTTEDQF 526 (526)
T ss_dssp HCHHHHGGGT-GTTSHHHHTTHHHHHHHHHHHCTTTSS--SSTTSHHHHH-
T ss_pred HHHHHHhccCCCeEchhhhhccChHHHHHHHhcCchHHhhhcCCCcccccC
Confidence 999999999999999999999999999999999999999999999999999
No 3
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=100.00 E-value=5.2e-178 Score=1420.34 Aligned_cols=525 Identities=64% Similarity=1.052 Sum_probs=514.0
Q ss_pred HHHHHHhhc-cCCCCCCCCCCCHHHHHHhhCCcc-ccCCchHHHHHHHHHHHhhhhCCCceeecCCCCHHHHHHHHccCC
Q 042063 22 VAEVQAWWN-SERFRLTRRPYSARDVVALRGSLR-QSYGSNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAKHLD 99 (575)
Q Consensus 22 ~~~i~~ww~-~~R~~~i~R~Yta~~v~~~rgs~~-~~y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~gf~ 99 (575)
+++|++||+ +|||++|+|||||+||++||||++ ..|||+.+|+|||++|+++++++++++++||+||+||+||+++|+
T Consensus 1 ~~~i~~~w~~~pR~~~i~RpYta~dVv~lRGs~~~~~~~s~~~a~kLw~ll~~~~~~~~~~~tlGAld~~qa~q~~kal~ 80 (527)
T TIGR01346 1 AQEIQKWWDTNPRWNGTTRPYTARDVADLRGSVIPEHYLSRRMAEKLWRALTQHGDNKTYSNTFGALDPVQASQMAKYLD 80 (527)
T ss_pred ChhhhhhhccCccccCCcCCCCHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhhhcCCceeeccccCHHHHHHHHHHhh
Confidence 368999996 999999999999999999999998 788999999999999999999999999999999999999999999
Q ss_pred eEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCC
Q 042063 100 SIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTG 179 (575)
Q Consensus 100 AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtG 179 (575)
+||+|||+||++++++++++||+++||+++||++|++|++||++|||||+++|+++++++|++++.+||++|||||+|+|
T Consensus 81 aIY~SGwq~Sa~~~~~~e~~PD~s~yp~~tVp~~V~~i~~aq~~hDr~q~~~~~~~~~~~r~~~~~~D~~iPIiaD~DtG 160 (527)
T TIGR01346 81 AIYLSGWQCSSTANTSNEPGPDLADYPADTVPNKVEHLFNAQLFHDRKQREARDTSVDNERSKTPYIDYLVPIVADGDAG 160 (527)
T ss_pred heehhHHHHHhhhcccCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHhccccchhhhccccccccccceEEECCCC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCch
Q 042063 180 FGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLI 259 (575)
Q Consensus 180 fGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l 259 (575)
||++++|+++||+|+++||+|||||||+.++|||||++||+|+|++||++||+|||.++|.+|+|||||||||+.++++|
T Consensus 161 yG~~~~v~~~vk~~ieaGAaGI~IEDq~~~~KkcGh~~gk~Lvp~~e~v~RI~AAr~Aad~~g~d~vI~ARTDA~~A~Li 240 (527)
T TIGR01346 161 FGGATAVFKLQKAFIERGAAGVHWEDQLSSEKKCGHMAGKVLIPVQEHVNRLVAARLAADIMGVPTLVVARTDAEAATLI 240 (527)
T ss_pred CCCcHHHHHHHHHHHHcCCeEEEEEcCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEecCccccccc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhHHHH
Q 042063 260 QTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRL 339 (575)
Q Consensus 260 ~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~ 339 (575)
+++||+|||+||.|+|||+++ ++.|++..+++.|++++++.+++++|.++++|+||+|+|.++++.+ ++..+...+
T Consensus 241 tS~iD~rDh~fI~G~tn~~~~--~l~~~l~~a~a~~~~Gad~~~~e~~W~~~a~l~tf~eav~~~i~~~--~~~~~~~~~ 316 (527)
T TIGR01346 241 TSDVDERDHPFITGATNPNLK--PLADVLARAMASGKSGADLQAVEDEWMAMADLKLFSDCVVDGIKAL--NVSEKGRRL 316 (527)
T ss_pred cccCCcccchhhcCCCCCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCccHHHHHHHHHhhc--cccchHHHH
Confidence 999999999999999999998 9999999999999999999999999999999999999999999654 456788999
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHH
Q 042063 340 NEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECT 419 (575)
Q Consensus 340 ~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~ 419 (575)
++|.+.+.+..+.|+++||.+|++++|.+|+||||.|||+|||||||||+++||+|++|||||||||||||++|||+||+
T Consensus 317 ~~~~~~~~~~~~~s~~~~r~~A~~~~~~~~~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~a~APyaDliW~ET~~Pdl~~A~ 396 (527)
T TIGR01346 317 GEWMQQTNTGNVLSYYQAKELAEKLGISNLFWDWDLPRTREGFYRVKGGLEPAIARAKAFAPYADLIWMETSTPDLELAK 396 (527)
T ss_pred HHHHhhcccccccchHHHHHHHHHhcCCCCcccCCCCcCCCcceeecCChHHHHHHHHhcCccccEEEecCCCCCHHHHH
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhhhHHHHHHHHHHhhHHHHH
Q 042063 420 KFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRGMLAYV 499 (575)
Q Consensus 420 ~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~~~~~GM~aYv 499 (575)
+||++||++||++||||||||||||+++ |||++|++||+||+|||||||||||||||++|++|++|||+|+++||+|||
T Consensus 397 ~Fa~~v~~~~P~k~LaYN~SPSFNW~~~-~~d~~~~~F~~~L~~lGy~~QfITLaG~H~~~~~~~~lA~~y~~~GM~AYv 475 (527)
T TIGR01346 397 KFAEGVKSKFPDQLLAYNLSPSFNWSAH-MEDDEIAKFIQELGDLGYKWQFITLAGFHSLALGMFDFAYDFAQEGMKAYV 475 (527)
T ss_pred HHHHHHHHHCCCCeEEecCCCCcccccc-CCHHHHHHHHHHHHhcCceEEEEehHhhhhhHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccccccCchhHHHHHHHhcCCcchhhcCCCCchhhhh
Q 042063 500 ERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQF 551 (575)
Q Consensus 500 ~~vQ~~E~~~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~~te~qf 551 (575)
|+|||+|++.|||+++||||||++|+|.++++|+||+|||+|||+|+||+||
T Consensus 476 e~vQ~~E~~~g~~~~~HQ~~sGa~y~D~~~~~v~~G~sst~am~~~~te~QF 527 (527)
T TIGR01346 476 EKVQQREMEDGVDALKHQKWSGAGYFDQLLKTVQGGNSATAAMKGGVTEDQF 527 (527)
T ss_pred HHHHHHHhhCCCCceeccccccccHHHHHHHHhcCCccchhhccCCcCcccC
Confidence 9999999999999999999999999999999999999999999999999999
No 4
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=100.00 E-value=4.1e-148 Score=1151.20 Aligned_cols=425 Identities=47% Similarity=0.746 Sum_probs=408.2
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHhhCCccccCCch-HHHHHHHHHHHhhhhCCCceeecCCCCHHHHHHHH
Q 042063 17 RFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSN-EMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMA 95 (575)
Q Consensus 17 ~~~~~~~~i~~ww~~~R~~~i~R~Yta~~v~~~rgs~~~~y~~~-~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a 95 (575)
.++++++.+++||.+|||++|+|||||+||+++|||++++|+++ .+|.|||++|+++++ ++++.++|||||++|.||+
T Consensus 4 ~~e~~~~~~~~w~~~~rw~~I~R~YsA~dVv~lrgs~~~~~~~a~~~A~kl~~ll~e~~~-~~~~~tlGal~g~qa~Q~~ 82 (433)
T COG2224 4 RFEQEEALEQEWWEDPRWKGIKRPYSAEDVVKLRGSVPIEYTLARLGAAKLWELLHELFK-EKYVNTLGALTGGQAVQMA 82 (433)
T ss_pred hhHHHHHHHHhhccCCCcccCCCCccHHHHHHHhCCCCcCccHHHHHHHHHHHHHHHhcc-ccchhccccCCHHHHHHHH
Confidence 46778899999999999999999999999999999999999987 699999999999987 9999999999999999999
Q ss_pred c-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceee
Q 042063 96 K-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIA 174 (575)
Q Consensus 96 ~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIA 174 (575)
+ |+++||+|||+||+.+|++++++||+++||+++||++|+||+++|++|||+|+.++....++ ..+||++||||
T Consensus 83 kagl~aiYlSGWqvaa~~n~~~~~~PDqs~Yp~~sVP~~V~rI~~al~~aD~~q~~~~~~~~~~-----~~~Dy~~PIiA 157 (433)
T COG2224 83 KAGIKAIYLSGWQVAADANLAGEMYPDQSLYPANSVPDVVKRINNALRRADQIQWSEGKGPGDR-----QAVDYFLPIVA 157 (433)
T ss_pred HhhhheEEeccceeeccccccCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHhccccccc-----cccccccceee
Confidence 8 89999999999999889999999999999999999999999999999999999988643322 26899999999
Q ss_pred eCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeeccc
Q 042063 175 DGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAE 254 (575)
Q Consensus 175 D~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~ 254 (575)
|+|+||||++|+++++|+|||+||+|||||||+++.|||||++||+|||++||++||+|+|+|+|+||+|+|||||||++
T Consensus 158 DadaGfGg~~~~~~L~K~~IEaGaagiH~EDQ~a~~KkCGH~gGkVlVPt~e~i~rL~AaRla~Dvmgv~tvlvARTDa~ 237 (433)
T COG2224 158 DAEAGFGGPLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHLGGKVLVPTQEAIRRLNAARLAADVMGVPTILVARTDAE 237 (433)
T ss_pred ccccCCCchHHHHHHHHHHHHhCCceeehhhhcccccccccCCCeEeccHHHHHHHHHHHHHHHHHhCCCceEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchh
Q 042063 255 AATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHE 334 (575)
Q Consensus 255 ~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~ 334 (575)
++++|++.+|+|+.+|+.
T Consensus 238 aA~Lits~~D~~d~~fi~-------------------------------------------------------------- 255 (433)
T COG2224 238 AADLITSDVDPSDGEFIT-------------------------------------------------------------- 255 (433)
T ss_pred hcccccccCCcccCCccC--------------------------------------------------------------
Confidence 999999999976666641
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCC
Q 042063 335 KRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPD 414 (575)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~ 414 (575)
+ +||+||||+||+|+++||+|++|||||||||||||++||
T Consensus 256 -------------------------------~---------~Rt~eG~y~~k~Gie~aI~r~lA~ApyaDl~W~ET~~Pd 295 (433)
T COG2224 256 -------------------------------G---------ERTSEGFYRTKGGIEQAIARGLAYAPYADLLWCETSTPD 295 (433)
T ss_pred -------------------------------C---------CcCCCceeeecCchHHHHHHHHhcCcccceEEEecCCCC
Confidence 1 899999999999999999999999999999999999999
Q ss_pred HHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhhhHHHHHHHHHHhh
Q 042063 415 LAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRG 494 (575)
Q Consensus 415 l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~~~~~G 494 (575)
|+|||+||++||++||++||+|||||||||+++ ++|++|++||+||++|||+||||||||||++|++|++||+.|+++|
T Consensus 296 le~ak~Fae~Ih~~~P~~~LaYN~SPSFNW~~~-~~de~i~~Fq~el~~mG~~fqfITlag~H~~~~s~~elA~~y~~dg 374 (433)
T COG2224 296 LEEARQFAEAIHAKYPGKLLAYNCSPSFNWKKN-LDDETIAKFQQELGKMGYKFQFITLAGFHSLNYSMFELARAYAQEG 374 (433)
T ss_pred HHHHHHHHHHHHHhCCcceeeecCCCCcCcccc-cCHHHHHHHHHHHHhheeeEEEEechhhhhhhhhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 7799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---hcCCCccccccccCchhHHHHHHHhcCCcchhhcCCCCchhhhh
Q 042063 495 MLAYVERIQREER---NNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQF 551 (575)
Q Consensus 495 M~aYv~~vQ~~E~---~~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~~te~qf 551 (575)
|+||| .|||+|. +.||++++||+|||++|+|.++++++||.|||+|||+|+||+||
T Consensus 375 M~aYv-~vQ~~E~~~~~~g~~~~~HQ~~vGt~y~D~~~~~~~gg~ss~tA~~~s~~~~QF 433 (433)
T COG2224 375 MKAYV-EVQEREFAAAEDGYTAVKHQREVGTGYFDKVLTAIQGGTSSTTALTGSTEEEQF 433 (433)
T ss_pred hHHHH-HHHHHHHHhhhcCCcccchhhhhccchHHHHHHHhcCCccchhcccCCcccccC
Confidence 99999 6899998 99999999999999999999999999999999999999999999
No 5
>PRK15063 isocitrate lyase; Provisional
Probab=100.00 E-value=6.5e-136 Score=1079.33 Aligned_cols=418 Identities=44% Similarity=0.724 Sum_probs=403.7
Q ss_pred HHHHHHHHHHhh-ccCCCCCCCCCCCHHHHHHhhCCccccCC-chHHHHHHHHHHHhhhhCCCceeecCCCCHHHHHHHH
Q 042063 18 FEAEVAEVQAWW-NSERFRLTRRPYSARDVVALRGSLRQSYG-SNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMA 95 (575)
Q Consensus 18 ~~~~~~~i~~ww-~~~R~~~i~R~Yta~~v~~~rgs~~~~y~-~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a 95 (575)
..+++++|++|| .+|||++|+|||||+||++||||++++|| ++.+|+|||++|++ ++++++|||+||+||+|++
T Consensus 5 ~~~~~~~~~~~w~~~~r~~~i~r~y~a~~v~~lrgs~~~~~~~a~~~a~kLr~lL~~----~~~~~~~Ga~d~~~A~q~~ 80 (428)
T PRK15063 5 RTQQIEELEKDWATNPRWKGITRPYSAEDVVRLRGSVQIEHTLARRGAEKLWELLHG----EPYVNALGALTGNQAVQQV 80 (428)
T ss_pred HHHHHHHHHHHhccCCccccCcCCCCHHHHHHHcCCCCCCCchHHHHHHHHHHHHhC----CCcEEecCCCCHHHHHHHH
Confidence 578999999999 79999999999999999999999999999 67999999999974 7899999999999999998
Q ss_pred c-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceee
Q 042063 96 K-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIA 174 (575)
Q Consensus 96 ~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIA 174 (575)
+ ||++||+|||+||++++++++|+||+++||+++||+.|++|++++++|||+++.++ +.+.+||++||||
T Consensus 81 ~aGf~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~~d~~~~~~~---------~~~~~d~~~PIiA 151 (428)
T PRK15063 81 KAGLKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRRADQIQWSEG---------DKGYIDYFAPIVA 151 (428)
T ss_pred HhCCCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHHhhhHhhhhc---------ccccccCCCCeEE
Confidence 8 89999999999999878889999999999999999999999999999999998543 2357899999999
Q ss_pred eCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeeccc
Q 042063 175 DGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAE 254 (575)
Q Consensus 175 D~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~ 254 (575)
|+|+||||++||+++||+|+++||+|||||||+++||||||++||+|||++||++||+|||.++|++|+|+|||||||++
T Consensus 152 DaDtGfGg~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~ 231 (428)
T PRK15063 152 DAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAE 231 (428)
T ss_pred ECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchh
Q 042063 255 AATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHE 334 (575)
Q Consensus 255 ~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~ 334 (575)
++++|+++||+|||+|+.
T Consensus 232 aa~li~s~~d~rD~~fi~-------------------------------------------------------------- 249 (428)
T PRK15063 232 AADLLTSDVDERDRPFIT-------------------------------------------------------------- 249 (428)
T ss_pred cccccccccccccccccc--------------------------------------------------------------
Confidence 999999999999999983
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCC
Q 042063 335 KRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPD 414 (575)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~ 414 (575)
| +||+||||+|++|++.||+|+++|+||||||||||+.||
T Consensus 250 -------------------------------g---------~r~~eg~y~~~~Gld~AI~Ra~AYa~GAD~iw~Et~~~d 289 (428)
T PRK15063 250 -------------------------------G---------ERTAEGFYRVKAGIEQAIARGLAYAPYADLIWCETSTPD 289 (428)
T ss_pred -------------------------------C---------CCccccccccccCHHHHHHHHHHHhcCCCEEEeCCCCCC
Confidence 2 799999999999999999999999999999999999999
Q ss_pred HHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhhhHHHHHHHHHHhh
Q 042063 415 LAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRG 494 (575)
Q Consensus 415 l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~~~~~G 494 (575)
++|+++|+++||++||+++|+|||||||||+++ |+|++|++|+++|++|||+||||||+|||+.+++|++|++.|+++|
T Consensus 290 ~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~-~~~~~~~~f~~eL~~~Gy~~~~~~la~~ha~~~a~~~~a~~~~~~G 368 (428)
T PRK15063 290 LEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKN-LDDATIAKFQRELGAMGYKFQFITLAGFHSLNYSMFDLAHGYAREG 368 (428)
T ss_pred HHHHHHHHHhhcccCccceeecCCCCCcccccc-cCHHHHHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HhcCCCccccccccCchhHHHHHHHhcCCcchhhcCCCCchhhhhh
Q 042063 495 MLAYVERIQREE---RNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQFK 552 (575)
Q Consensus 495 M~aYv~~vQ~~E---~~~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~~te~qf~ 552 (575)
|+|||+ |||+| ++.||++++||+|||++|+|.++++|+||+|||+||++|+||+|||
T Consensus 369 m~ay~~-~Q~~e~~~~~~g~~~~~hq~~~G~~y~D~~~~~~~~g~sst~a~~~~~~~~qf~ 428 (428)
T PRK15063 369 MAAYVE-LQEAEFAAEERGYTAVKHQREVGTGYFDAVTTVIQGGQSSTTALTGSTEEEQFH 428 (428)
T ss_pred cHHHHH-HHHHHHHHHhcCcceeechhhccccHHHHHHHHHcCCchhhhhccCCcchhhcC
Confidence 999999 89999 8999999999999999999999999999999999999999999995
No 6
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=100.00 E-value=1.9e-134 Score=1055.22 Aligned_cols=487 Identities=48% Similarity=0.815 Sum_probs=458.0
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHhhCCcccc-CCchHHHHHHHHHHHhhhhCCCceeecCCCCHHHHHHH
Q 042063 16 GRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQS-YGSNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTMM 94 (575)
Q Consensus 16 ~~~~~~~~~i~~ww~~~R~~~i~R~Yta~~v~~~rgs~~~~-y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~ 94 (575)
..+.+++.+|++||.++||++|+||||+.||+.+|||.+.. ||++.+|.||+++|+++|+++.+..++||.||+|+.|+
T Consensus 2 ~~~~~~~~~iekww~ss~~~~ikr~ysasdv~~~~~s~~~~vypss~~a~kl~~llr~~~n~gtvs~t~Ga~dpvq~sq~ 81 (492)
T KOG1260|consen 2 LEYEKEVEEIEKWWCSSSFSRIKRNYTASDVAVLRGSSPASVYPSSRMARKLFRLLREHHNEGTVSDTLGAKDPVQASQM 81 (492)
T ss_pred chHHHHHHHHHHHhccCCcccccCCCchhhhhhcCCCCCcccchhhhhHHHHHHHHHHhccCCcccccccccCchhHHHH
Confidence 35789999999999999999999999999999999999865 99999999999999999999999999999999999999
Q ss_pred Hc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCcee
Q 042063 95 AK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPII 173 (575)
Q Consensus 95 a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPII 173 (575)
++ |++++|+|||+|++++++ .++||.++||++++|+.|.||+++|++|||+|.+++. +..+ ..||++|||
T Consensus 82 ~r~gl~~iyiSG~~cs~~~~~--~~~pD~adyP~dtvP~~v~rif~~q~~h~r~q~~~~~-i~~~------~~dyl~PII 152 (492)
T KOG1260|consen 82 ARAGLSAIYISGWQCSATLSG--KLGPDRADYPYDTVPESVERIFKSQLIHDRKQIEAGS-IKAE------ESDYLIPII 152 (492)
T ss_pred HHhcCCeEEeechhhhhhhcc--CCCCccccCCCcCCHHHHHHHHHHhhhcchhhhhhcc-cccc------cccccccee
Confidence 98 799999999999987554 4489999999999999999999999999999998775 4432 239999999
Q ss_pred eeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecc
Q 042063 174 ADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDA 253 (575)
Q Consensus 174 AD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA 253 (575)
||+|+||||++||+++||.||++||||||||||+.+.|||||+.|++|||++||+.||+|+|+|+|+||.|++||||||+
T Consensus 153 aDad~G~G~atnv~k~~K~fIeaGaAGIhleDq~~~~k~cgh~sGr~VVPt~ehv~Rl~a~R~~~Dim~sd~iivARTDs 232 (492)
T KOG1260|consen 153 ADADAGFGGATNVFKTVKGFIEAGAAGIHLEDQACGEKKCGHMSGRVVVPTEEHVRRLKAARLAADIMGADTIIVARTDS 232 (492)
T ss_pred ecCCCCCchHHHHHHHHHHHHHcccceeeeehhhcccccccccCCcEEecHHHHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCch
Q 042063 254 EAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEH 333 (575)
Q Consensus 254 ~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~ 333 (575)
+++.++++.||+|||+|+.|+|++++ ..+..+...+.++..+..+++.|...+.|+||+||+.+++
T Consensus 233 ~a~~l~tS~iDpRDh~~i~g~~~~~~------s~~~emk~~~~~~~~~~k~~~~w~~~~kl~~f~ea~~~e~-------- 298 (492)
T KOG1260|consen 233 RAASLLTSLIDPRDHAFIGGATLSND------SSLEEMKDFCNVGPLVAKLENMWESGAKLPTFNEAVLEEI-------- 298 (492)
T ss_pred hhhhhhhccCCchhhhhhhccccchh------hHHHHHHhhcccchhhHHHHHhhhhccccccccHHHHhhh--------
Confidence 99999999999999999999998654 2444455667888999999999999999999999998876
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCc-HHHHHHHhhhcCCcCcEEeeccCC
Q 042063 334 EKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGS-VDAAIIRGWAFAPHADLIWMETAS 412 (575)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg-~~~ai~R~~a~apyaDl~W~Et~~ 412 (575)
..++++.+++++....++|||++|||+||+|+|+|+ ++++|.|+++||||+||+||||++
T Consensus 299 -------------------~~~~~~~~~~ei~~~~i~fdw~lpr~keG~y~~~gsa~q~~I~rai~fApy~d~~w~et~~ 359 (492)
T KOG1260|consen 299 -------------------TYREVKYLASEIGVSEIFFDWELPRTKEGRYRFKGSAIQEEIGRAIAFAPYADLIWMETSY 359 (492)
T ss_pred -------------------hhhhhhhhHhhhhhhhhhcccccccccCceecCCCchHHHHHHHHHccCchhhhhhhhcCC
Confidence 135678899999888999999999999999999996 999999999999999999999999
Q ss_pred CCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhhhHHHHHHHHHH
Q 042063 413 PDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYAR 492 (575)
Q Consensus 413 P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~~~~ 492 (575)
||++||++|+++||++||+.||+|||||||||+++||+|+|+++|+++|++|||+||||||+|+|+++.++++|++.|++
T Consensus 360 pd~~eakeFsegv~~~~pd~m~ay~~sPsfn~~~a~~~~~Q~~~f~~~l~~~G~~~q~itla~~~~~~~a~~d~~~~~k~ 439 (492)
T KOG1260|consen 360 PDRQEAKEFSEGVKKQYPDSMLAYNFSPSFNWKKAGFSDEQLVAFDDDLGKMGFILQVITLAGLHANRNAFVDLSNIFKK 439 (492)
T ss_pred CCHHHHHHHHHHhhhcChhhHhhhcCCCCCCcccccCCHHHHHhhhhhHhhcCeEEEEeehhHhcccchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCccccccccCchhHHHHHHHhcCCcchhhcCCCC-chhhhh
Q 042063 493 RGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKG-VTEDQF 551 (575)
Q Consensus 493 ~GM~aYv~~vQ~~E~~~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~-~te~qf 551 (575)
+||+||++ +|+. |+.+||+|+|++|||.+.+.++||.+|+++++.+ +||.||
T Consensus 440 dGi~~y~~----~E~~---dv~~hq~~~~~eyfd~l~~lvqgg~~s~~~l~s~~~se~qf 492 (492)
T KOG1260|consen 440 DGIKGYDG----REKT---DVKKHQEPSGTEYFDGLSRLVQGGLSSWTALSSGKVSETQF 492 (492)
T ss_pred cccccccc----cchh---hhhhhhhhhhHHHHHHHHHHHhccccccccccccccccccC
Confidence 99999998 3666 9999999999999999999999999999998877 999998
No 7
>PRK06498 isocitrate lyase; Provisional
Probab=100.00 E-value=1.2e-127 Score=1018.59 Aligned_cols=459 Identities=27% Similarity=0.446 Sum_probs=392.8
Q ss_pred HHHHHHHHHHhh--ccCCCCCCCCCCCHHHHHHhh--CCccccCCch-HHHHHHHHHHHhhhh-CCCceeecCCCCHHHH
Q 042063 18 FEAEVAEVQAWW--NSERFRLTRRPYSARDVVALR--GSLRQSYGSN-EMAKKLWRTLKTHQA-NGTASRTFGALDPVQV 91 (575)
Q Consensus 18 ~~~~~~~i~~ww--~~~R~~~i~R~Yta~~v~~~r--gs~~~~y~~~-~~A~kL~~lL~~~~~-~~~~l~~~Ga~D~~sA 91 (575)
++++++.+..-- ..|||++| |+|||+++| ||++++|+.+ .+|++||++|++.-+ +.+++.++|||+|.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~w~~i----~~e~v~rlr~q~~~~~~~~iA~~~a~~~~~~m~~yd~d~~~y~~slGa~~g~~a 79 (531)
T PRK06498 4 YQSDIDAVAALKEKQGSTWNAI----NPESAARMRLQNRFKTGLDIAKYTAKIMRADMAAYDADSSKYTQSLGCWHGFIA 79 (531)
T ss_pred hHHHHHHHHHHHhhcCCCCCCC----CHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHhhcccchhhhhhhcCCcHHHH
Confidence 344444444432 28999999 999999999 9999999986 899999999987321 2479999999999999
Q ss_pred HHHHc----cC-----CeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHH----------hhhhHHHHHHHH
Q 042063 92 TMMAK----HL-----DSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFA----------QQYHDRKQREAR 152 (575)
Q Consensus 92 ~~~a~----gf-----~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~a----------q~~hDr~q~~~r 152 (575)
.|+++ || ++||+|||+||++.+. ..++||+++||.++||++|++|+++ |+|||+++..++
T Consensus 80 ~Q~~~a~k~~~~~t~~~~iYlSGW~vAa~~n~-~g~~PDqS~yp~~sVP~lv~~i~~~l~~AD~~~~~~lf~~~~~a~~~ 158 (531)
T PRK06498 80 QQKMISIKKHFGTTKRRYLYLSGWMVAALRSE-FGPLPDQSMHEKTSVPALIEELYTFLRQADARELNDLFRELDAAREA 158 (531)
T ss_pred HHHHHHHHhccCCCccceEEehhhHHHhhhhc-cCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99875 67 9999999999998665 6679999999999999999999999 555555555544
Q ss_pred hhccHhhhh---cCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHH
Q 042063 153 MSMSREERA---RTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHIN 229 (575)
Q Consensus 153 ~~~~~e~~~---~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~ 229 (575)
-..+.+++. ..+..+|++|||||+|+||||++||+++||.|+++||+|||||||+.+||||||++||+|||++||++
T Consensus 159 g~~~~~~~~~~~~d~~~~~~iPIIADaDtGfG~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~ 238 (531)
T PRK06498 159 GDKAKEAAIQAKIDNFETHVVPIIADIDAGFGNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLA 238 (531)
T ss_pred ccchhhhhhhhccccccccccceEEEcCCCCCcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHH
Confidence 322222221 11345699999999999999999999999999999999999999997799999999999999999999
Q ss_pred HHHHHHHhhhhcCC-ceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHH
Q 042063 230 RLVAARLQFDVMGV-ETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNW 308 (575)
Q Consensus 230 RL~AAR~a~d~~g~-d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W 308 (575)
||+|||.+++.||+ ||||||||||+++++++ .||++++++.+| .+ ..+|
T Consensus 239 KI~AAr~A~d~~G~~D~vIIARTDA~~A~L~~-~Id~~~~~g~~~----------------------------~~-~~~w 288 (531)
T PRK06498 239 KIRAVRYAFLELGVDDGVIVARTDSLGAGLTQ-QIAVSQEPGDLG----------------------------DQ-YNSF 288 (531)
T ss_pred HHHHHHHHHHhcCCCCEEEEEecchhhcCCcc-ccccccccchhh----------------------------HH-HHhh
Confidence 99999999999986 59999999999999996 899776655431 11 3678
Q ss_pred HhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCc
Q 042063 309 IAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGS 388 (575)
Q Consensus 309 ~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg 388 (575)
.+..++ + .+.++++ ..+++..+.+. ..|||+||||+||+|
T Consensus 289 ~~~~~i-~-----~~~~~~~----------------------~~~i~~~~~~~------------~~~Rt~eG~Y~~k~g 328 (531)
T PRK06498 289 LDCEEI-D-----AADLGNG----------------------DVVIKRDGKLL------------RPKRLPSGLFQFREG 328 (531)
T ss_pred hhhccc-C-----HHHhccc----------------------chhHhhccccc------------CCCCCcccceeecCC
Confidence 887766 2 3333222 12222222221 239999999999996
Q ss_pred HHH--HHHHhh-hcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCccccccc------------CCC----
Q 042063 389 VDA--AIIRGW-AFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDA------------SGM---- 449 (575)
Q Consensus 389 ~~~--ai~R~~-a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~------------~G~---- 449 (575)
+++ ||.|++ +|+||||||||||++||++||++|+++||++||++||||||||||||++ +||
T Consensus 329 tg~~~~I~r~i~a~apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~LaYN~SPSFNW~~~~r~q~~~~~~~~G~~~~~ 408 (531)
T PRK06498 329 TGEDRCVLDCITSLQNGADLLWIETEKPHVAQIAGMVNRIREVVPNAKLVYNNSPSFNWTLNFRQQVYDAWKAEGKDVSA 408 (531)
T ss_pred CchHHHHHHHHHhhcCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCcchhhhHHHHHHHHHHHhcccccc
Confidence 665 999999 7999999999999999999999999999999999999999999999999 566
Q ss_pred -------------------CHHHHHhhHHHHHh-cCceeeeecchhhhhhhhhHHHHHHHH-HHhhHHHHHHHHHHHHHh
Q 042063 450 -------------------TDEEMKDFIPRIAK-LGFCWQFITLAGFHADALVVDTFAKDY-ARRGMLAYVERIQREERN 508 (575)
Q Consensus 450 -------------------s~~~i~~F~~~L~~-~G~~~Q~ItLaG~H~~~~~~~~la~~~-~~~GM~aYv~~vQ~~E~~ 508 (575)
+|++|++||+||++ +||+||||||||||++|++|++|||.| +++||+|||+.|||+|++
T Consensus 409 ~~~~~lm~~~~d~~~l~~~~d~~i~~Fq~dla~~~G~~~qfITLag~Ht~als~~~LAk~y~~~~GM~aYV~~vQr~E~~ 488 (531)
T PRK06498 409 YDRAKLMSAEYDDTELAAEADEKIRTFQADAAREAGIFHHLITLPTYHTAALSTDNLAKGYFGDQGMLGYVAGVQRKEIR 488 (531)
T ss_pred cchhhhccccccccccccCCHHHHHHHHHHHHHhCCceEEEeccHhHHHhHHHHHHHHHHHhhhcCHHHHHHHHhHHHHh
Confidence 89999999999999 999999999999999999999999996 579999999999999999
Q ss_pred cCCCccccccccCchhHHHHHHHhcCCcchhhcCCCCchhhhhh
Q 042063 509 NGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQFK 552 (575)
Q Consensus 509 ~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~~te~qf~ 552 (575)
.||++++||+|||++|+|.++++| +|+|||+|||+++||+||.
T Consensus 489 ~G~~~vkHQ~~~Gs~y~D~~~~~~-~G~sa~~a~G~~~Te~QF~ 531 (531)
T PRK06498 489 QGIACVKHQNMAGSDIGDDHKEYF-AGEAALKAGGKDNTMNQFA 531 (531)
T ss_pred cCCceeechhhccccHHHHHHHHh-ccchhhhhccCCCchhccC
Confidence 999999999999999999999999 8999999999999999993
No 8
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=100.00 E-value=8.4e-51 Score=415.93 Aligned_cols=247 Identities=26% Similarity=0.447 Sum_probs=217.4
Q ss_pred HHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHH
Q 042063 68 RTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDR 146 (575)
Q Consensus 68 ~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr 146 (575)
+.|+++|++++++++||+||++||+++++ ||++||+|||++|+ .+|+||.+++|++++++.+++|.+
T Consensus 3 ~~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~-----~lG~pD~g~lt~~e~~~~~~~I~~------- 70 (285)
T TIGR02317 3 KAFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA-----SLGLPDLGITTLDEVAEDARRITR------- 70 (285)
T ss_pred HHHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH-----hCCCCCCCCCCHHHHHHHHHHHHh-------
Confidence 34667777889999999999999998777 89999999999998 489999999999999999999975
Q ss_pred HHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHH
Q 042063 147 KQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISE 226 (575)
Q Consensus 147 ~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E 226 (575)
.++ +|||||+|+|||++.||+++|++|+++||+|||||||. +||||||+.||.|+|++|
T Consensus 71 ------------------~~~--iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~-~pK~cgh~~g~~lv~~ee 129 (285)
T TIGR02317 71 ------------------VTD--LPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQV-LPKRCGHLPGKELVSREE 129 (285)
T ss_pred ------------------ccC--CCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCC-CccccCCCCCccccCHHH
Confidence 367 99999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHH
Q 042063 227 HINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIED 306 (575)
Q Consensus 227 ~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~ 306 (575)
|++||+||+.+++ ++|||||||||++...+++++|+ |+++|.+
T Consensus 130 ~~~kI~Aa~~a~~--~~d~~IiARTDa~~~~g~deAI~-Ra~ay~~---------------------------------- 172 (285)
T TIGR02317 130 MVDKIAAAVDAKR--DEDFVIIARTDARAVEGLDAAIE-RAKAYVE---------------------------------- 172 (285)
T ss_pred HHHHHHHHHHhcc--CCCEEEEEEcCcccccCHHHHHH-HHHHHHH----------------------------------
Confidence 9999999998875 68999999999999889999999 9999963
Q ss_pred HHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCcccccc
Q 042063 307 NWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFK 386 (575)
Q Consensus 307 ~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~ 386 (575)
.|
T Consensus 173 ----------------------------------------------------------AG-------------------- 174 (285)
T TIGR02317 173 ----------------------------------------------------------AG-------------------- 174 (285)
T ss_pred ----------------------------------------------------------cC--------------------
Confidence 02
Q ss_pred CcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCC--ceeeecCCcccccccCCCCHHHHHhhHHHHHhc
Q 042063 387 GSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPE--IMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKL 464 (575)
Q Consensus 387 gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~--~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~ 464 (575)
||+||+|..+ +++++++|++.|. .|= .++.|+.+|.++ ..+|.++
T Consensus 175 ----------------AD~vfi~g~~-~~e~i~~~~~~i~--~Pl~~n~~~~~~~p~~s--------------~~eL~~l 221 (285)
T TIGR02317 175 ----------------ADMIFPEALT-SLEEFRQFAKAVK--VPLLANMTEFGKTPLFT--------------ADELREA 221 (285)
T ss_pred ----------------CCEEEeCCCC-CHHHHHHHHHhcC--CCEEEEeccCCCCCCCC--------------HHHHHHc
Confidence 8889998744 7899999988885 231 133344444443 3789999
Q ss_pred CceeeeecchhhhhhhhhHHHHHHHHHHhhH
Q 042063 465 GFCWQFITLAGFHADALVVDTFAKDYARRGM 495 (575)
Q Consensus 465 G~~~Q~ItLaG~H~~~~~~~~la~~~~~~GM 495 (575)
||...+.....++....++.+.+..+++.|.
T Consensus 222 Gv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~ 252 (285)
T TIGR02317 222 GYKMVIYPVTAFRAMNKAAEAVYNEIKEHGT 252 (285)
T ss_pred CCcEEEEchHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998885
No 9
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=100.00 E-value=1.3e-50 Score=415.55 Aligned_cols=250 Identities=27% Similarity=0.410 Sum_probs=218.8
Q ss_pred HHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHH
Q 042063 69 TLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRK 147 (575)
Q Consensus 69 lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~ 147 (575)
.|+++|++++++++||+||++||+++++ ||++||+|||++|++ ..|+||.+++|++++++.+++|++
T Consensus 8 ~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~----~lG~PD~g~l~~~e~~~~~~~I~~-------- 75 (292)
T PRK11320 8 RFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAA----SLGLPDLGITTLDDVLIDVRRITD-------- 75 (292)
T ss_pred HHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhH----hcCCCCCCCCCHHHHHHHHHHHHh--------
Confidence 3566667889999999999999998877 899999999999853 589999999999999999999975
Q ss_pred HHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHH
Q 042063 148 QREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEH 227 (575)
Q Consensus 148 q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~ 227 (575)
.++ +|||||+|+|||++.||+++|++|+++||+|||||||. +||||||+.||.|+|++||
T Consensus 76 -----------------~~~--iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~-~pK~cg~~~~~~lv~~ee~ 135 (292)
T PRK11320 76 -----------------ACD--LPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQV-GAKRCGHRPNKEIVSQEEM 135 (292)
T ss_pred -----------------ccC--CCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCC-CccccCCCCCCcccCHHHH
Confidence 467 99999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHH
Q 042063 228 INRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDN 307 (575)
Q Consensus 228 v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~ 307 (575)
++||+||+.+++ ++||+||||||++...+++++|+ |+++|.+ +
T Consensus 136 ~~kI~Aa~~a~~--~~d~~IiARTDa~~~~g~deAI~-Ra~aY~e----------A------------------------ 178 (292)
T PRK11320 136 VDRIKAAVDART--DPDFVIMARTDALAVEGLDAAIE-RAQAYVE----------A------------------------ 178 (292)
T ss_pred HHHHHHHHHhcc--CCCeEEEEecCcccccCHHHHHH-HHHHHHH----------c------------------------
Confidence 999999998876 79999999999998889999999 9999973 1
Q ss_pred HHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccC
Q 042063 308 WIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKG 387 (575)
Q Consensus 308 W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~g 387 (575)
|
T Consensus 179 ----------------------------------------------------------G--------------------- 179 (292)
T PRK11320 179 ----------------------------------------------------------G--------------------- 179 (292)
T ss_pred ----------------------------------------------------------C---------------------
Confidence 2
Q ss_pred cHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCce
Q 042063 388 SVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFC 467 (575)
Q Consensus 388 g~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~ 467 (575)
||+||+|..+ +++++++|++.|. ..|..|.. ++.++-. +| ..+|+++||.
T Consensus 180 ---------------AD~ifi~~~~-~~~~i~~~~~~~~-----~Pl~~n~~-~~~~~p~-~s-------~~~L~~lGv~ 229 (292)
T PRK11320 180 ---------------ADMIFPEAMT-ELEMYRRFADAVK-----VPILANIT-EFGATPL-FT-------TEELASAGVA 229 (292)
T ss_pred ---------------CCEEEecCCC-CHHHHHHHHHhcC-----CCEEEEec-cCCCCCC-CC-------HHHHHHcCCc
Confidence 8889988754 7999999999884 23555554 2332221 22 3788999999
Q ss_pred eeeecchhhhhhhhhHHHHHHHHHHhhHH
Q 042063 468 WQFITLAGFHADALVVDTFAKDYARRGML 496 (575)
Q Consensus 468 ~Q~ItLaG~H~~~~~~~~la~~~~~~GM~ 496 (575)
..++....++....++.+.++.++++|+.
T Consensus 230 ~v~~~~~~~~aa~~a~~~~~~~l~~~g~~ 258 (292)
T PRK11320 230 MVLYPLSAFRAMNKAAENVYEAIRRDGTQ 258 (292)
T ss_pred EEEEChHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999984
No 10
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=402.83 Aligned_cols=259 Identities=29% Similarity=0.398 Sum_probs=225.6
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhh
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYH 144 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~h 144 (575)
....||++|++++++++||+|||+||+..++ ||++||+||++||+ +.|+||++..+++++...++||++
T Consensus 6 ~~~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~-----slG~pD~~~~t~~e~~~~vrrI~~----- 75 (289)
T COG2513 6 PGAAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAA-----SLGLPDLGITTLDEVLADARRITD----- 75 (289)
T ss_pred HHHHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHH-----hcCCCccccccHHHHHHHHHHHHh-----
Confidence 3445667777899999999999999997666 99999999999998 589999999999999999999985
Q ss_pred HHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCH
Q 042063 145 DRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAI 224 (575)
Q Consensus 145 Dr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~ 224 (575)
.++ +||+||+|+|||++.|++++|+.++++|++|||||||+ +||||||+.||.|+|+
T Consensus 76 --------------------a~~--lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~-~pk~cgh~~gk~l~~~ 132 (289)
T COG2513 76 --------------------AVD--LPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQV-GPKRCGHLPGKELVSI 132 (289)
T ss_pred --------------------hcC--CceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecc-cchhcCCCCCCCcCCH
Confidence 478 99999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHH
Q 042063 225 SEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAI 304 (575)
Q Consensus 225 ~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~ 304 (575)
+||++||+||+.++. ++|||||||||++..++++++|+ |+++|++ +|||+|
T Consensus 133 ~e~v~rIkAa~~a~~--~~~fvi~ARTda~~~~~ld~AI~-Ra~AY~e----------AGAD~i---------------- 183 (289)
T COG2513 133 DEMVDRIKAAVEARR--DPDFVIIARTDALLVEGLDDAIE-RAQAYVE----------AGADAI---------------- 183 (289)
T ss_pred HHHHHHHHHHHHhcc--CCCeEEEeehHHHHhccHHHHHH-HHHHHHH----------cCCcEE----------------
Confidence 999999999999875 49999999999999999999999 9999985 455444
Q ss_pred HHHHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCcccc
Q 042063 305 EDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYR 384 (575)
Q Consensus 305 ~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~ 384 (575)
T Consensus 184 -------------------------------------------------------------------------------- 183 (289)
T COG2513 184 -------------------------------------------------------------------------------- 183 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhc
Q 042063 385 FKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKL 464 (575)
Q Consensus 385 ~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~ 464 (575)
|.|--+ +.++.++|+++|+ ..|.-|......|.. +|. .+|+++
T Consensus 184 ----------------------f~~al~-~~e~i~~f~~av~-----~pl~~N~t~~g~tp~--~~~-------~~L~~~ 226 (289)
T COG2513 184 ----------------------FPEALT-DLEEIRAFAEAVP-----VPLPANITEFGKTPL--LTV-------AELAEL 226 (289)
T ss_pred ----------------------ccccCC-CHHHHHHHHHhcC-----CCeeeEeeccCCCCC--cCH-------HHHHhc
Confidence 444323 3677778877776 457777777777733 443 678999
Q ss_pred CceeeeecchhhhhhhhhHHHHHHHHHHhhHHHHH-HHHH
Q 042063 465 GFCWQFITLAGFHADALVVDTFAKDYARRGMLAYV-ERIQ 503 (575)
Q Consensus 465 G~~~Q~ItLaG~H~~~~~~~~la~~~~~~GM~aYv-~~vQ 503 (575)
||.-.+..+..|+..+..+.+.++..+++|-...+ +.+|
T Consensus 227 Gv~~V~~~~~~~raa~~a~~~~~~~i~~~gt~~~~~d~m~ 266 (289)
T COG2513 227 GVKRVSYGLTAFRAALKAAEQAAREIRREGTQANVLDKMQ 266 (289)
T ss_pred CceEEEECcHHHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 99999999999999999999999999999877766 4444
No 11
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=100.00 E-value=8.9e-48 Score=394.94 Aligned_cols=250 Identities=23% Similarity=0.368 Sum_probs=214.3
Q ss_pred HHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHH
Q 042063 68 RTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDR 146 (575)
Q Consensus 68 ~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr 146 (575)
+.||++|++++++++||+||++||+.+++ ||++||+||++++++ .+|+||.+++++++++..+++|.+
T Consensus 6 ~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as----~lG~pD~g~l~~~e~~~~~~~I~~------- 74 (294)
T TIGR02319 6 RTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSAS----MLGLPDLGFTSVSEQAINAKNIVL------- 74 (294)
T ss_pred HHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHH----HcCCCCcCCCCHHHHHHHHHHHHh-------
Confidence 45666777889999999999999998776 899999999999874 589999999999999999999975
Q ss_pred HHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHH
Q 042063 147 KQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISE 226 (575)
Q Consensus 147 ~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E 226 (575)
.++ +|||||+|+|||++.|++++|++|+++||+|||||||. +||||||++||.|+|++|
T Consensus 75 ------------------~~~--lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~-~pK~cg~~~~k~lv~~ee 133 (294)
T TIGR02319 75 ------------------AVD--VPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQV-NPKRCGHLEGKRLISTEE 133 (294)
T ss_pred ------------------ccC--CCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCC-CccccCCCCCccccCHHH
Confidence 467 99999999999999999999999999999999999998 699999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHH
Q 042063 227 HINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIED 306 (575)
Q Consensus 227 ~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~ 306 (575)
|++||+||+.+++ ++|||||||||++...+++++|+ |+++|.+ +|
T Consensus 134 ~~~kI~Aa~~A~~--~~d~~I~ARTDa~~~~g~deaI~-Ra~aY~e----------AG---------------------- 178 (294)
T TIGR02319 134 MTGKIEAAVEARE--DEDFTIIARTDARESFGLDEAIR-RSREYVA----------AG---------------------- 178 (294)
T ss_pred HHHHHHHHHHhcc--CCCeEEEEEecccccCCHHHHHH-HHHHHHH----------hC----------------------
Confidence 9999999998876 48999999999998889999999 9999973 22
Q ss_pred HHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCcccccc
Q 042063 307 NWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFK 386 (575)
Q Consensus 307 ~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~ 386 (575)
T Consensus 179 -------------------------------------------------------------------------------- 178 (294)
T TIGR02319 179 -------------------------------------------------------------------------------- 178 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCc
Q 042063 387 GSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGF 466 (575)
Q Consensus 387 gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~ 466 (575)
||+||+|. ..+.+++++|++.|..-.+--++..+.+|.++ ..+|.++||
T Consensus 179 ----------------AD~ifi~~-~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s--------------~~eL~~lG~ 227 (294)
T TIGR02319 179 ----------------ADCIFLEA-MLDVEEMKRVRDEIDAPLLANMVEGGKTPWLT--------------TKELESIGY 227 (294)
T ss_pred ----------------CCEEEecC-CCCHHHHHHHHHhcCCCeeEEEEecCCCCCCC--------------HHHHHHcCC
Confidence 67777765 45777788887777421110123333344433 388999999
Q ss_pred eeeeecchhhhhhhhhHHHHHHHHHHhhH
Q 042063 467 CWQFITLAGFHADALVVDTFAKDYARRGM 495 (575)
Q Consensus 467 ~~Q~ItLaG~H~~~~~~~~la~~~~~~GM 495 (575)
.........++....++.+.++.++++|.
T Consensus 228 ~~v~~~~~~~~aa~~a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 228 NLAIYPLSGWMAAASVLRKLFTELREAGT 256 (294)
T ss_pred cEEEEcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999998885
No 12
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=100.00 E-value=5.1e-46 Score=381.64 Aligned_cols=202 Identities=24% Similarity=0.302 Sum_probs=180.0
Q ss_pred HHHHHHHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHh
Q 042063 63 AKKLWRTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQ 141 (575)
Q Consensus 63 A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq 141 (575)
+++||++| ++++++++|||||++||+.+++ ||++||+||+++|+ ++|+||.+++|+++++..+++|.+
T Consensus 4 ~~~lr~~l----~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~-----slG~pD~g~l~~~e~~~~~~~I~~-- 72 (290)
T TIGR02321 4 NQALRAAL----DSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSA-----SYAVPDANILSMSTHLEMMRAIAS-- 72 (290)
T ss_pred HHHHHHHH----hCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHH-----HCCCCCcccCCHHHHHHHHHHHHh--
Confidence 34555555 5689999999999999998776 99999999999997 379999999999999999999975
Q ss_pred hhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCC-CC-C
Q 042063 142 QYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHM-AG-K 219 (575)
Q Consensus 142 ~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~-~G-k 219 (575)
.++ +||+||+|+|||++.||+++|++|+++||+|||||||. .||+|||+ .| +
T Consensus 73 -----------------------~~~--lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~-~pk~cg~~~~g~~ 126 (290)
T TIGR02321 73 -----------------------TVS--IPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKT-FPKDTSLRTDGRQ 126 (290)
T ss_pred -----------------------ccC--CCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCC-CCcccccccCCCc
Confidence 467 99999999999999999999999999999999999998 69999998 56 7
Q ss_pred cccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccc-cCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCH
Q 042063 220 VLVAISEHINRLVAARLQFDVMGVETVLVARTDAEA-ATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTG 298 (575)
Q Consensus 220 ~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~-a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~ 298 (575)
.|+|++||++||+||+.++ .++|||||||||++. ..+++++|+ |+++|.+ +|||++++ ++...+.
T Consensus 127 ~l~~~ee~~~kI~Aa~~a~--~~~d~~I~ARTDa~~~~~g~deAI~-Ra~aY~e----------AGAD~ifv-~~~~~~~ 192 (290)
T TIGR02321 127 ELVRIEEFQGKIAAATAAR--ADRDFVVIARVEALIAGLGQQEAVR-RGQAYEE----------AGADAILI-HSRQKTP 192 (290)
T ss_pred cccCHHHHHHHHHHHHHhC--CCCCEEEEEEeccccccCCHHHHHH-HHHHHHH----------cCCCEEEe-cCCCCCH
Confidence 8999999999999999875 479999999999994 567899999 9999996 78888886 3333899
Q ss_pred HHHHHHHHHHHhcCCcc
Q 042063 299 AELQAIEDNWIAMAGLK 315 (575)
Q Consensus 299 ~ei~~~~~~W~~~~~l~ 315 (575)
+||.+++++|....||+
T Consensus 193 ~ei~~~~~~~~~p~pv~ 209 (290)
T TIGR02321 193 DEILAFVKSWPGKVPLV 209 (290)
T ss_pred HHHHHHHHhcCCCCCeE
Confidence 99999999998877885
No 13
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=100.00 E-value=1.5e-44 Score=362.23 Aligned_cols=239 Identities=33% Similarity=0.436 Sum_probs=214.9
Q ss_pred HHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHH
Q 042063 70 LKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQ 148 (575)
Q Consensus 70 L~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q 148 (575)
|+++|++++++++||+||++||+++++ ||++||+|||+++++ .|+||.+.+|+++++..+++|++
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s-----~G~pD~~~~~~~e~~~~~~~I~~--------- 66 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAAS-----LGLPDGGLLTLDEVLAAVRRIAR--------- 66 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHh-----cCCCCCCcCCHHHHHHHHHHHHh---------
Confidence 466777899999999999999998877 899999999999984 69999999999999999999985
Q ss_pred HHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHH
Q 042063 149 REARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHI 228 (575)
Q Consensus 149 ~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v 228 (575)
.++ +||++|+|+|||++.++.+++++++++||+|||||||. .+|||||++++.++|++|++
T Consensus 67 ----------------~~~--~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~-~~k~~g~~~~~~~~~~ee~~ 127 (243)
T cd00377 67 ----------------AVD--LPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQV-GPKKCGHHGGKVLVPIEEFV 127 (243)
T ss_pred ----------------hcc--CCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCC-CCccccCCCCCeecCHHHHH
Confidence 245 99999999999999999999999999999999999999 69999999999999999999
Q ss_pred HHHHHHHHhhhhcCCceEEEEeeccccc--CchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHH
Q 042063 229 NRLVAARLQFDVMGVETVLVARTDAEAA--TLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIED 306 (575)
Q Consensus 229 ~RL~AAR~a~d~~g~d~vIiARTDA~~a--~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~ 306 (575)
+||+|++.+++.+ +|++||||||++.. .+++++|+ |+++|.+
T Consensus 128 ~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~-Ra~ay~~---------------------------------- 171 (243)
T cd00377 128 AKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIE-RAKAYAE---------------------------------- 171 (243)
T ss_pred HHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHH-HHHHHHH----------------------------------
Confidence 9999999999866 89999999999987 58888888 8888862
Q ss_pred HHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCcccccc
Q 042063 307 NWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFK 386 (575)
Q Consensus 307 ~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~ 386 (575)
.|
T Consensus 172 ----------------------------------------------------------AG-------------------- 173 (243)
T cd00377 172 ----------------------------------------------------------AG-------------------- 173 (243)
T ss_pred ----------------------------------------------------------cC--------------------
Confidence 12
Q ss_pred CcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCc
Q 042063 387 GSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGF 466 (575)
Q Consensus 387 gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~ 466 (575)
||+||+++.. +.++.++|++. ++..+.+|++|.++ .-..++|+++||
T Consensus 174 ----------------AD~v~v~~~~-~~~~~~~~~~~-----~~~Pl~~~~~~~~~-----------~~~~~~l~~lG~ 220 (243)
T cd00377 174 ----------------ADGIFVEGLK-DPEEIRAFAEA-----PDVPLNVNMTPGGN-----------LLTVAELAELGV 220 (243)
T ss_pred ----------------CCEEEeCCCC-CHHHHHHHHhc-----CCCCEEEEecCCCC-----------CCCHHHHHHCCC
Confidence 8999999877 88999999887 56789999999887 223478899999
Q ss_pred eeeeecchhhhhhhhhHHHHHH
Q 042063 467 CWQFITLAGFHADALVVDTFAK 488 (575)
Q Consensus 467 ~~Q~ItLaG~H~~~~~~~~la~ 488 (575)
.+++++...+|....++.++++
T Consensus 221 ~~v~~~~~~~~~a~~a~~~~~~ 242 (243)
T cd00377 221 RRVSYGLALLRAAAKAMREAAR 242 (243)
T ss_pred eEEEEChHHHHHHHHHHHHHHh
Confidence 9999999999999999988875
No 14
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=100.00 E-value=1.2e-44 Score=362.39 Aligned_cols=202 Identities=24% Similarity=0.336 Sum_probs=167.0
Q ss_pred HHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHH
Q 042063 70 LKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQ 148 (575)
Q Consensus 70 L~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q 148 (575)
||++|++++++++||+||++||+.+++ ||++||+||+++|++ .|+||.+++|++++...+++|++
T Consensus 1 fr~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s-----~G~pD~~~lt~~e~~~~~~~I~~--------- 66 (238)
T PF13714_consen 1 FRQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAAS-----LGYPDGGLLTLTEMLAAVRRIAR--------- 66 (238)
T ss_dssp HHHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHH-----TTS-SSS-S-HHHHHHHHHHHHH---------
T ss_pred ChhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHH-----cCCCCCCCCCHHHHHHHHHHHHh---------
Confidence 566777889999999999999998776 899999999999984 69999999999999999999985
Q ss_pred HHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCC-chHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHH
Q 042063 149 REARMSMSREERARTPCVDYLKPIIADGDTGFGG-TTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEH 227 (575)
Q Consensus 149 ~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg-~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~ 227 (575)
.++ +||+||+|+|||+ +.||+++|++|+++||+||||||| |||| +++.|+|++||
T Consensus 67 ----------------~~~--iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq-----~~~~-~~~~l~~~ee~ 122 (238)
T PF13714_consen 67 ----------------AVS--IPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ-----RCGH-GGKQLVSPEEM 122 (238)
T ss_dssp ----------------HSS--SEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB-----STTT-STT-B--HHHH
T ss_pred ----------------hhc--CcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc-----ccCC-CCCceeCHHHH
Confidence 356 9999999999999 999999999999999999999999 8999 89999999999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeecccc--cCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCC-CCHHHHHHH
Q 042063 228 INRLVAARLQFDVMGVETVLVARTDAEA--ATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAG-KTGAELQAI 304 (575)
Q Consensus 228 v~RL~AAR~a~d~~g~d~vIiARTDA~~--a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g-~s~~ei~~~ 304 (575)
++||+||+.+++ +++||||||||++. ..+++++|+ |+++|.+ +|||++++ .| .+.+||.++
T Consensus 123 ~~kI~Aa~~a~~--~~~~~I~ARTDa~~~~~~~~deaI~-R~~aY~e----------AGAD~ifi---~~~~~~~~i~~~ 186 (238)
T PF13714_consen 123 VAKIRAAVDARR--DPDFVIIARTDAFLRAEEGLDEAIE-RAKAYAE----------AGADMIFI---PGLQSEEEIERI 186 (238)
T ss_dssp HHHHHHHHHHHS--STTSEEEEEECHHCHHHHHHHHHHH-HHHHHHH----------TT-SEEEE---TTSSSHHHHHHH
T ss_pred HHHHHHHHHhcc--CCeEEEEEeccccccCCCCHHHHHH-HHHHHHH----------cCCCEEEe---CCCCCHHHHHHH
Confidence 999999999886 56799999999986 679999999 9999995 67777765 34 688999999
Q ss_pred HHHHHhcCCccc---ccHHHHHHHhc
Q 042063 305 EDNWIAMAGLKT---FSECVIDAVNN 327 (575)
Q Consensus 305 ~~~W~~~~~l~t---f~ea~~~~l~~ 327 (575)
+++|. .||.. ......++|.+
T Consensus 187 ~~~~~--~Pl~v~~~~~~~~~~eL~~ 210 (238)
T PF13714_consen 187 VKAVD--GPLNVNPGPGTLSAEELAE 210 (238)
T ss_dssp HHHHS--SEEEEETTSSSS-HHHHHH
T ss_pred HHhcC--CCEEEEcCCCCCCHHHHHH
Confidence 99994 66652 22344455544
No 15
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=100.00 E-value=2.2e-42 Score=354.15 Aligned_cols=251 Identities=20% Similarity=0.248 Sum_probs=211.9
Q ss_pred HhhhhCCCceeecCCCCHHHHHHHH-c---------cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHH
Q 042063 71 KTHQANGTASRTFGALDPVQVTMMA-K---------HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFA 140 (575)
Q Consensus 71 ~~~~~~~~~l~~~Ga~D~~sA~~~a-~---------gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~a 140 (575)
|+++++++++++||+||++||++++ . ||++||+||+++|+ ..|+||.+++|+++++..+++|++
T Consensus 2 r~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~-----s~G~pD~~~~~~~e~~~~~~~I~~- 75 (285)
T TIGR02320 2 RQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDST-----SRGVPDIEEASWTQRLDVVEFMFD- 75 (285)
T ss_pred hHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHH-----HCCCCCcCcCCHHHHHHHHHHHHh-
Confidence 4455678899999999999999765 4 79999999999997 489999999999999999999975
Q ss_pred hhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCC-
Q 042063 141 QQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGK- 219 (575)
Q Consensus 141 q~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk- 219 (575)
.++ +|||+|+|+| |++.++.++|++++++||+|||||||. +||||||++++
T Consensus 76 ------------------------a~~--~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~-~pk~cg~~~~~~ 127 (285)
T TIGR02320 76 ------------------------VTT--KPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKL-GLKKNSLFGNDV 127 (285)
T ss_pred ------------------------hcC--CCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccC-CCccccccCCCC
Confidence 366 9999999999 999999999999999999999999998 79999999987
Q ss_pred --cccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccc-cCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCC
Q 042063 220 --VLVAISEHINRLVAARLQFDVMGVETVLVARTDAEA-ATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGK 296 (575)
Q Consensus 220 --~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~-a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~ 296 (575)
.++|.+|+++||+|++.++. ++|++||||||++. ..+++++|+ |+++|.+
T Consensus 128 ~~~l~s~ee~~~kI~Aa~~a~~--~~~~~IiARTDa~~~~~~~~eAi~-Ra~ay~e------------------------ 180 (285)
T TIGR02320 128 AQPQASVEEFCGKIRAGKDAQT--TEDFMIIARVESLILGKGMEDALK-RAEAYAE------------------------ 180 (285)
T ss_pred cccccCHHHHHHHHHHHHHhcc--CCCeEEEEecccccccCCHHHHHH-HHHHHHH------------------------
Confidence 79999999999999998754 78999999999985 457999999 9999963
Q ss_pred CHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCC
Q 042063 297 TGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLP 376 (575)
Q Consensus 297 s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~ 376 (575)
.|
T Consensus 181 --------------------------------------------------------------------AG---------- 182 (285)
T TIGR02320 181 --------------------------------------------------------------------AG---------- 182 (285)
T ss_pred --------------------------------------------------------------------cC----------
Confidence 12
Q ss_pred CCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHh
Q 042063 377 RTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKD 456 (575)
Q Consensus 377 Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~ 456 (575)
||+||++...++.++.++|.+.|+..||+..|..|.+ .+.. +|
T Consensus 183 --------------------------AD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~-~~~~----~~------ 225 (285)
T TIGR02320 183 --------------------------ADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPT-SYYT----TP------ 225 (285)
T ss_pred --------------------------CCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecC-CCCC----CC------
Confidence 8899998767889999999999999999987765432 1111 22
Q ss_pred hHHHHHhcCceeeeecchhhhhhhhhHHHHHHHHHHhhHHHH
Q 042063 457 FIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYARRGMLAY 498 (575)
Q Consensus 457 F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~~~~~GM~aY 498 (575)
..+|.++||..-......+...-..+.+.++.++++|-...
T Consensus 226 -~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~~~~g~~~~ 266 (285)
T TIGR02320 226 -TDEFRDAGISVVIYANHLLRAAYAAMQQVAERILEHGRLVE 266 (285)
T ss_pred -HHHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 28899999998666666666667777777777777775443
No 16
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=100.00 E-value=4.5e-32 Score=272.17 Aligned_cols=226 Identities=28% Similarity=0.284 Sum_probs=181.4
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhh
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYH 144 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~h 144 (575)
||+++ +..++++++++||+||+.||+++++ ||++||+||+++++ .+|+||.+.+|+++++..+++|+++
T Consensus 1 ~~~~~-~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~-----~~G~pD~~~vtl~em~~~~~~I~r~---- 70 (240)
T cd06556 1 LWLLQ-KYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMT-----VAGYDDTLPYPVNDVPYHVRAVRRG---- 70 (240)
T ss_pred CHhHH-HHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHH-----hcCCCCCCCcCHHHHHHHHHHHHhh----
Confidence 57744 4447789999999999999998887 89999999999876 5899999999999999999999863
Q ss_pred HHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCc-hHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccC
Q 042063 145 DRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGT-TATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVA 223 (575)
Q Consensus 145 Dr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~-~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp 223 (575)
... +|||||+|+|||+. .++.+++++|+++||+|||||||.
T Consensus 71 --------------------~~~--~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~---------------- 112 (240)
T cd06556 71 --------------------APL--ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE---------------- 112 (240)
T ss_pred --------------------CCC--CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH----------------
Confidence 123 79999999999975 899999999999999999999983
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHH
Q 042063 224 ISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQA 303 (575)
Q Consensus 224 ~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~ 303 (575)
|+++||++++.+. ++||||||+.....++..
T Consensus 113 --~~~~~i~ai~~a~------i~ViaRtd~~pq~~~~~g----------------------------------------- 143 (240)
T cd06556 113 --WHIETLQMLTAAA------VPVIAHTGLTPQSVNTSG----------------------------------------- 143 (240)
T ss_pred --HHHHHHHHHHHcC------CeEEEEeCCchhhhhccC-----------------------------------------
Confidence 7888999998653 899999998542111100
Q ss_pred HHHHHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccc
Q 042063 304 IEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFY 383 (575)
Q Consensus 304 ~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y 383 (575)
|. ++++
T Consensus 144 --------------------------------------------------------------g~------------~~~~ 149 (240)
T cd06556 144 --------------------------------------------------------------GD------------EGQY 149 (240)
T ss_pred --------------------------------------------------------------Cc------------eeec
Confidence 00 2334
Q ss_pred cccCcHHHHHHHhhhcCCc-CcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHH
Q 042063 384 RFKGSVDAAIIRGWAFAPH-ADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIA 462 (575)
Q Consensus 384 ~~~gg~~~ai~R~~a~apy-aDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~ 462 (575)
+-..+++.+|+|+.+|.+. ||+||+|.. +.+++++|++.+ +..+.+|++|+
T Consensus 150 ~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~i~~~~-----~~P~~~~gag~--------------------- 201 (240)
T cd06556 150 RGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQITEAL-----AIPLAGIGAGS--------------------- 201 (240)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHhC-----CCCEEEEecCc---------------------
Confidence 4456778899999999777 999999965 899999998874 45699999998
Q ss_pred hcCceeeeecchhhhhhhh-hHHHHHHHHHH
Q 042063 463 KLGFCWQFITLAGFHADAL-VVDTFAKDYAR 492 (575)
Q Consensus 463 ~~G~~~Q~ItLaG~H~~~~-~~~~la~~~~~ 492 (575)
|+-+|++++..+=..+. ..-.|+|.|..
T Consensus 202 --~~dgq~lv~~d~lg~~~~~~p~f~~~~~~ 230 (240)
T cd06556 202 --GTDGQFLVLADAFGITGGHIPKFAKNFHA 230 (240)
T ss_pred --CCCceEEeHHhhhcccCCCCCchHHHHhh
Confidence 78889999888744421 24566776654
No 17
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=99.83 E-value=1.9e-20 Score=189.78 Aligned_cols=177 Identities=15% Similarity=0.054 Sum_probs=128.7
Q ss_pred HHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHH
Q 042063 69 TLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRK 147 (575)
Q Consensus 69 lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~ 147 (575)
.|+++|++++++++|+|||+.||+++.+ ||++|++ |.+++++ .+|+||.+.++++++...+++|.+
T Consensus 3 ~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~v-Gds~~~~----~lG~pDt~~vtl~em~~~~~~V~r-------- 69 (254)
T cd06557 3 DLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILV-GDSLGMV----VLGYDSTLPVTLDEMIYHTRAVRR-------- 69 (254)
T ss_pred hHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEE-CHHHHHH----HcCCCCCCCcCHHHHHHHHHHHHh--------
Confidence 3677777899999999999999998777 8999995 5444432 589999999999999999999975
Q ss_pred HHHHHhhccHhhhhcCCCCCCCCc-eeeeCC-CCCCC-chH-HHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccC
Q 042063 148 QREARMSMSREERARTPCVDYLKP-IIADGD-TGFGG-TTA-TVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVA 223 (575)
Q Consensus 148 q~~~r~~~~~e~~~~~~~vd~~lP-IIAD~D-tGfGg-~~n-v~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp 223 (575)
.++ +| |++|.+ .||++ +.+ +..+++.+.++||+||||||+
T Consensus 70 -----------------~~~--~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~----------------- 113 (254)
T cd06557 70 -----------------GAP--RALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG----------------- 113 (254)
T ss_pred -----------------cCC--CCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------
Confidence 355 78 887775 44554 445 445566666699999999997
Q ss_pred HHHHHHHHHHHHHhhh-hc------------CCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHH
Q 042063 224 ISEHINRLVAARLQFD-VM------------GVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAE 290 (575)
Q Consensus 224 ~~E~v~RL~AAR~a~d-~~------------g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~ 290 (575)
+|+++||++++.+.- ++ -.++.+.+|||+. .++.|+ |+++|.+ +|+|+++.
T Consensus 114 -~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~----a~~~i~-ra~a~~~----------AGA~~i~l 177 (254)
T cd06557 114 -AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEE----AERLLE-DALALEE----------AGAFALVL 177 (254)
T ss_pred -HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHH----HHHHHH-HHHHHHH----------CCCCEEEE
Confidence 399999999996531 01 1234555555543 467777 9999985 66666654
Q ss_pred HHHCCCCHHHHHHHHHHHHhcCCcc
Q 042063 291 AMAAGKTGAELQAIEDNWIAMAGLK 315 (575)
Q Consensus 291 ~~s~g~s~~ei~~~~~~W~~~~~l~ 315 (575)
.+.+.+++.++.++- +.|++
T Consensus 178 ---E~v~~~~~~~i~~~v--~iP~i 197 (254)
T cd06557 178 ---ECVPAELAKEITEAL--SIPTI 197 (254)
T ss_pred ---cCCCHHHHHHHHHhC--CCCEE
Confidence 455555666666654 35665
No 18
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=99.80 E-value=4e-19 Score=181.08 Aligned_cols=178 Identities=13% Similarity=0.046 Sum_probs=128.2
Q ss_pred HHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHH
Q 042063 69 TLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRK 147 (575)
Q Consensus 69 lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~ 147 (575)
.|++++++++++++|+|||+.||+++.+ ||++|+++. +++.. .+|+||.+.++++++...++.|.+
T Consensus 6 ~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGd-s~~~~----~lG~~Dt~~vtl~em~~h~~~V~r-------- 72 (264)
T PRK00311 6 DLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGD-SLGMV----VLGYDSTLPVTLDDMIYHTKAVAR-------- 72 (264)
T ss_pred HHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECH-HHHHH----HcCCCCCCCcCHHHHHHHHHHHHh--------
Confidence 3666777889999999999999997776 899999754 44432 589999999999999999999975
Q ss_pred HHHHHhhccHhhhhcCCCCCCCCceeeeCC-CCCC-CchHH-HHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCH
Q 042063 148 QREARMSMSREERARTPCVDYLKPIIADGD-TGFG-GTTAT-VKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAI 224 (575)
Q Consensus 148 q~~~r~~~~~e~~~~~~~vd~~lPIIAD~D-tGfG-g~~nv-~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~ 224 (575)
.++ ..||++|.. .||+ ++.++ ..+++.+.++||+||+|||+
T Consensus 73 -----------------~~~-~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg------------------ 116 (264)
T PRK00311 73 -----------------GAP-RALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG------------------ 116 (264)
T ss_pred -----------------cCC-CCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc------------------
Confidence 244 135888886 5563 45664 44556666699999999997
Q ss_pred HHHHHHHHHHHHhh-hhc------------CCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHH
Q 042063 225 SEHINRLVAARLQF-DVM------------GVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEA 291 (575)
Q Consensus 225 ~E~v~RL~AAR~a~-d~~------------g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~ 291 (575)
+++++||++++.+. .+| ..++.|.+|||+. .++.|+ |+++|.+ +|+|+++.
T Consensus 117 ~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~----a~~~i~-ra~a~~e----------AGA~~i~l- 180 (264)
T PRK00311 117 EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEA----AEKLLE-DAKALEE----------AGAFALVL- 180 (264)
T ss_pred HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHH----HHHHHH-HHHHHHH----------CCCCEEEE-
Confidence 38999999998542 111 1245666666654 467777 9999985 66666654
Q ss_pred HHCCCCHHHHHHHHHHHHhcCCcc
Q 042063 292 MAAGKTGAELQAIEDNWIAMAGLK 315 (575)
Q Consensus 292 ~s~g~s~~ei~~~~~~W~~~~~l~ 315 (575)
.+.+.+.+.++.++- +.|++
T Consensus 181 --E~v~~~~~~~i~~~l--~iP~i 200 (264)
T PRK00311 181 --ECVPAELAKEITEAL--SIPTI 200 (264)
T ss_pred --cCCCHHHHHHHHHhC--CCCEE
Confidence 455555566665554 35554
No 19
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=99.49 E-value=2.6e-13 Score=138.41 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=123.9
Q ss_pred HHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHH
Q 042063 70 LKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQ 148 (575)
Q Consensus 70 L~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q 148 (575)
|++++++++++.+++|||..+|+++.+ ||++|+++.+.... .+|+||...++++++...++.|.++.
T Consensus 7 ~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~-----~lG~~~t~~vtldem~~h~~aV~rg~------- 74 (263)
T TIGR00222 7 LLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMV-----VLGHDSTLPVTVADMIYHTAAVKRGA------- 74 (263)
T ss_pred HHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHH-----hcCCCCCCCcCHHHHHHHHHHHHhhC-------
Confidence 556777899999999999999998765 89999988766554 69999999999999999999997631
Q ss_pred HHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHH-cCceEEEeccCCCcccccCCCCCCcccCHHHH
Q 042063 149 REARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVE-RGAAGVHIEDQSSVTKKCGHMAGKVLVAISEH 227 (575)
Q Consensus 149 ~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ie-AGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~ 227 (575)
. ...-.+| +|+. ||+++..+.+++.++++ +||+||+|||. .++
T Consensus 75 -------~----~~~vv~D--mPf~-----sy~~~e~a~~na~rl~~eaGa~aVkiEgg------------------~~~ 118 (263)
T TIGR00222 75 -------P----NCLIVTD--LPFM-----SYATPEQALKNAARVMQETGANAVKLEGG------------------EWL 118 (263)
T ss_pred -------C----CceEEeC--CCcC-----CCCCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HhH
Confidence 0 0000134 5554 88888888888888777 99999999994 356
Q ss_pred HHHHHHHHHhhhhcCCceE-------EEEeecc-cccC-----chHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHC
Q 042063 228 INRLVAARLQFDVMGVETV-------LVARTDA-EAAT-----LIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAA 294 (575)
Q Consensus 228 v~RL~AAR~a~d~~g~d~v-------IiARTDA-~~a~-----~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~ 294 (575)
+.+|++... .|.+++ +.+|+|. +... ...+.|+ |+++|.+ +|+++++. .
T Consensus 119 ~~~i~~l~~----~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~-~A~a~e~----------AGA~~ivl---E 180 (263)
T TIGR00222 119 VETVQMLTE----RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLE-DALALEE----------AGAQLLVL---E 180 (263)
T ss_pred HHHHHHHHH----CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHH-HHHHHHH----------cCCCEEEE---c
Confidence 677765543 367777 7788875 3211 2456777 9999984 56666543 4
Q ss_pred CCCHHHHHHHHHH
Q 042063 295 GKTGAELQAIEDN 307 (575)
Q Consensus 295 g~s~~ei~~~~~~ 307 (575)
+...+...++.++
T Consensus 181 ~vp~~~a~~It~~ 193 (263)
T TIGR00222 181 CVPVELAAKITEA 193 (263)
T ss_pred CCcHHHHHHHHHh
Confidence 4454444444444
No 20
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=99.25 E-value=8e-11 Score=123.28 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=120.6
Q ss_pred HHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHH
Q 042063 69 TLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRK 147 (575)
Q Consensus 69 lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~ 147 (575)
.|++++++++++.++.|||..+|+.+.+ |+++|-++.+.... .+|+||...++++++...++.+.++
T Consensus 26 ~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv-----~lG~~~T~~Vtld~mi~H~~aV~Rg------- 93 (332)
T PLN02424 26 TLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMV-----VHGHDTTLPITLDEMLVHCRAVARG------- 93 (332)
T ss_pred HHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHH-----hcCCCCCCCcCHHHHHHHHHHHhcc-------
Confidence 3677888899999999999999997776 89999999977665 5999999999999999999998752
Q ss_pred HHHHHhhccHhhhhcCCCCCCCCceee-eCCCC-CC-CchHHHHHHHHHH-HcCceEEEeccCCCcccccCCCCCCcccC
Q 042063 148 QREARMSMSREERARTPCVDYLKPIIA-DGDTG-FG-GTTATVKLCKLFV-ERGAAGVHIEDQSSVTKKCGHMAGKVLVA 223 (575)
Q Consensus 148 q~~~r~~~~~e~~~~~~~vd~~lPIIA-D~DtG-fG-g~~nv~~lvk~~i-eAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp 223 (575)
+. .|+++ |..-| |+ ++..+.+++.+++ ++||.||+|||..
T Consensus 94 ------------------a~--~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~---------------- 137 (332)
T PLN02424 94 ------------------AN--RPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS---------------- 137 (332)
T ss_pred ------------------CC--CCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc----------------
Confidence 34 67766 99999 97 7888889888885 7999999999974
Q ss_pred HHHHHHHHHHHHHhhhhcCCceE----EEEeecccccC---------chHHHHHHHHHhhh-hcc
Q 042063 224 ISEHINRLVAARLQFDVMGVETV----LVARTDAEAAT---------LIQTNVDTRDHQFI-LGV 274 (575)
Q Consensus 224 ~~E~v~RL~AAR~a~d~~g~d~v----IiARTDA~~a~---------~l~~aId~R~~aYi-~Ga 274 (575)
.+.+..|++.. ..|.+++ |+.|++....+ .....|+ |+++|. +||
T Consensus 138 -~~~~~~I~~l~----~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~-dA~ale~AGA 196 (332)
T PLN02424 138 -PSRVTAAKAIV----EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVE-TALALQEAGC 196 (332)
T ss_pred -HHHHHHHHHHH----HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHH-HHHHHHHcCC
Confidence 23444444443 2489999 99999997532 1345556 999997 444
No 21
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=95.90 E-value=0.042 Score=56.91 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=70.0
Q ss_pred HHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHH
Q 042063 70 LKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQ 148 (575)
Q Consensus 70 L~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q 148 (575)
|++..++++++...-|||..+|+.+.+ |.+.|-+.= .++.. .+|+++---.+++++...++.+.+.
T Consensus 8 l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGD-Slgmv----~~G~~sT~~vtld~mi~h~~aV~Rg-------- 74 (261)
T PF02548_consen 8 LRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGD-SLGMV----VLGYDSTLPVTLDEMIYHTKAVRRG-------- 74 (261)
T ss_dssp HHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-T-THHHH----TT--SSSTT--HHHHHHHHHHHHHH--------
T ss_pred HHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCC-cHHHh----eeCCCCCcCcCHHHHHHHHHHHHhc--------
Confidence 455556789999999999999997665 799998865 33332 6899998888999888888877542
Q ss_pred HHHHhhccHhhhhcCCCCCCCCceeeeCCCC-C-CCchHHHHHHHHHHH-cCceEEEecc
Q 042063 149 REARMSMSREERARTPCVDYLKPIIADGDTG-F-GGTTATVKLCKLFVE-RGAAGVHIED 205 (575)
Q Consensus 149 ~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtG-f-Gg~~nv~~lvk~~ie-AGaAGIhIED 205 (575)
..+ ..||+|.--| | .++....+++.+|++ +||.+|.||=
T Consensus 75 ----------------a~~--~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEG 116 (261)
T PF02548_consen 75 ----------------APN--AFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEG 116 (261)
T ss_dssp -----------------TS--SEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEB
T ss_pred ----------------CCC--ceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEecc
Confidence 123 6799998866 3 367788888888887 9999999993
No 22
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=94.30 E-value=0.54 Score=48.84 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=76.0
Q ss_pred HHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHH
Q 042063 70 LKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQ 148 (575)
Q Consensus 70 L~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q 148 (575)
|.+.-+++.++..+-+||..+|+.+.+ |++.|.+.-.. .. +.+|+++--..+++++.-..+...++
T Consensus 7 ~~~~k~~~~ki~~lTAYD~~~A~~~d~agvd~lLVGDSl-gm----vv~G~~sTl~Vsl~~mi~ht~aV~Rg-------- 73 (268)
T COG0413 7 LIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSL-GM----VVLGYDSTLPVTLEDMIYHTKAVRRG-------- 73 (268)
T ss_pred HHHHHhcCCceEEEeccccHHHhhhhhcCCcEEEEeccH-HH----HHcCCCCcceecHHHHHHHHHHHHhc--------
Confidence 344445789999999999999997766 79999987632 22 25788776666666666555555431
Q ss_pred HHHHhhccHhhhhcCCCCCCCCceeeeCCCC-CC-CchHHHHHHHHHHH-cCceEEEeccC
Q 042063 149 REARMSMSREERARTPCVDYLKPIIADGDTG-FG-GTTATVKLCKLFVE-RGAAGVHIEDQ 206 (575)
Q Consensus 149 ~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtG-fG-g~~nv~~lvk~~ie-AGaAGIhIEDQ 206 (575)
.-+ .=|++|.-=| |. ++....+.+-++.+ +||.+|-+|=.
T Consensus 74 ----------------a~~--~~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG 116 (268)
T COG0413 74 ----------------APN--AFVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGG 116 (268)
T ss_pred ----------------CCC--eeEEeCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 122 4488888877 76 67777777766666 99999999975
No 23
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.76 E-value=0.19 Score=51.26 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred ccCcHHHHHHHhhhc-CCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHh
Q 042063 385 FKGSVDAAIIRGWAF-APHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAK 463 (575)
Q Consensus 385 ~~gg~~~ai~R~~a~-apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~ 463 (575)
-.+|++-+|+|+.+| .-.||+|+++.. .+.++.++|++.|. .| |..+..|.- +|. .+|.+
T Consensus 150 ~~~~~deaI~R~~aY~eAGAD~ifi~~~-~~~~~i~~~~~~~~--~P---l~v~~~~~~------~~~-------~eL~~ 210 (238)
T PF13714_consen 150 AEEGLDEAIERAKAYAEAGADMIFIPGL-QSEEEIERIVKAVD--GP---LNVNPGPGT------LSA-------EELAE 210 (238)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEETTS-SSHHHHHHHHHHHS--SE---EEEETTSSS------S-H-------HHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCC-CCHHHHHHHHHhcC--CC---EEEEcCCCC------CCH-------HHHHH
Confidence 467899999999997 668999999997 57788999999993 44 655554421 332 77899
Q ss_pred cCceeeeecchhhhhhhhhHHHHHHHH
Q 042063 464 LGFCWQFITLAGFHADALVVDTFAKDY 490 (575)
Q Consensus 464 ~G~~~Q~ItLaG~H~~~~~~~~la~~~ 490 (575)
+||..-.+....+.....++.+.++.+
T Consensus 211 lGv~~v~~~~~~~~aa~~a~~~~~~~i 237 (238)
T PF13714_consen 211 LGVKRVSYGNSLLRAAMKAMRDAAEAI 237 (238)
T ss_dssp TTESEEEETSHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHhc
Confidence 999999888888888777777766653
No 24
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=91.73 E-value=1.5 Score=45.77 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhCCCceeecCCCCHHHHHHHHc-c--CCeEeechHHHhhccCCCCCCCCC-CCCCCcCcHHHHHHHHH
Q 042063 65 KLWRTLKTHQANGTASRTFGALDPVQVTMMAK-H--LDSIYVSGWQCSSTHTSTNEPGPD-LADYPYDTVPNKVEHLF 138 (575)
Q Consensus 65 kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-g--f~AIy~SG~~vAa~~~~~~~g~PD-~~~~p~~tv~~~v~rI~ 138 (575)
.+.+.|++..++++|++-.|+..+++|+..++ | |=.+|-||--=.+ |.+- .+++||..-=+.|..+.
T Consensus 2 eil~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~-------G~~SlagllpygnaN~iv~em~ 72 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMA-------GRGSLAGLLPYGNANEIVMEMA 72 (268)
T ss_dssp HHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHT-------T--GGGGGBTEEEHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhC-------CCcchhhhhcccCHhHHHHHHH
Confidence 34556777778899999999999999997776 4 5577878754333 1111 25578876655555553
No 25
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.56 E-value=2.1 Score=44.56 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=95.0
Q ss_pred HHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeeccccc-CchHHHHHHH
Q 042063 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAA-TLIQTNVDTR 266 (575)
Q Consensus 188 ~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a-~~l~~aId~R 266 (575)
-.++.+.++|+.+|-.-|.+ +.-..||.+ ...++.+|++..+++++.+. +.+ +|++=..=-.. ...+++++ +
T Consensus 26 ~sArl~e~aG~d~i~vGds~-~~~~lG~~D-t~~vtl~em~~h~~~V~r~~---~~p-~vvaD~pfg~y~~~~~~av~-~ 98 (264)
T PRK00311 26 PFAKLFDEAGVDVILVGDSL-GMVVLGYDS-TLPVTLDDMIYHTKAVARGA---PRA-LVVADMPFGSYQASPEQALR-N 98 (264)
T ss_pred HHHHHHHHcCCCEEEECHHH-HHHHcCCCC-CCCcCHHHHHHHHHHHHhcC---CCC-cEEEeCCCCCccCCHHHHHH-H
Confidence 45788999999999999887 344567654 46899999999999987654 233 44443321111 23455666 5
Q ss_pred HH-hhh-hccCCCCCCcchHHHHHHHHHHCCCCHHHHHH-HHHHHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHH
Q 042063 267 DH-QFI-LGVTNPNLRGKALASILAEAMAAGKTGAELQA-IEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWM 343 (575)
Q Consensus 267 ~~-aYi-~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~-~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~ 343 (575)
.. -|. .|+...+++ . | ++..+ +..--....|++-
T Consensus 99 a~r~~~~aGa~aVkiE--d-----------g---~~~~~~I~al~~agIpV~g--------------------------- 135 (264)
T PRK00311 99 AGRLMKEAGAHAVKLE--G-----------G---EEVAETIKRLVERGIPVMG--------------------------- 135 (264)
T ss_pred HHHHHHHhCCeEEEEc--C-----------c---HHHHHHHHHHHHCCCCEee---------------------------
Confidence 44 444 455443332 1 1 11111 1111111233320
Q ss_pred hhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCC--CccccccCcHH----HHHHHhhhc-CCcCcEEeeccCCCCHH
Q 042063 344 NLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTR--EGFYRFKGSVD----AAIIRGWAF-APHADLIWMETASPDLA 416 (575)
Q Consensus 344 ~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~--eG~y~~~gg~~----~ai~R~~a~-apyaDl~W~Et~~P~l~ 416 (575)
| +|.. |||- .|=|+++|-++ .+|+|+.+| .--||+|-+|-- |. +
T Consensus 136 ----H----------------iGL~-------pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v-~~-~ 186 (264)
T PRK00311 136 ----H----------------LGLT-------PQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV-PA-E 186 (264)
T ss_pred ----e----------------eccc-------ceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC-CH-H
Confidence 0 1111 4442 45677777654 579999997 678999999987 55 7
Q ss_pred HHHhHHhhhh
Q 042063 417 ECTKFAGGIK 426 (575)
Q Consensus 417 ~a~~Fa~~i~ 426 (575)
.++++.+.|.
T Consensus 187 ~~~~i~~~l~ 196 (264)
T PRK00311 187 LAKEITEALS 196 (264)
T ss_pred HHHHHHHhCC
Confidence 8888877773
No 26
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.16 E-value=1.6 Score=45.45 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=86.8
Q ss_pred hCCCceeecCCCCHHHHHHHHccCCeEeechHHHhhc-----cCCCCCCCCCC---CC-CCcCcHHHHHHHHHHHh----
Q 042063 75 ANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST-----HTSTNEPGPDL---AD-YPYDTVPNKVEHLFFAQ---- 141 (575)
Q Consensus 75 ~~~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~-----~~~~~~g~PD~---~~-~p~~tv~~~v~rI~~aq---- 141 (575)
++-+.-++-.++|+-++..+++..+.+.+.+..+-.. ++ ..+.|=. +. .+++++.+.++.|...-
T Consensus 88 ~~~Gl~~~te~~d~~~~~~l~~~vd~~kIga~~~~n~~LL~~~a--~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i 165 (266)
T PRK13398 88 DKYNLPVVTEVMDTRDVEEVADYADMLQIGSRNMQNFELLKEVG--KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENV 165 (266)
T ss_pred HHcCCCEEEeeCChhhHHHHHHhCCEEEECcccccCHHHHHHHh--cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeE
Confidence 3345666668888888765555566777666655431 11 2333321 22 25666666666664210
Q ss_pred -hhh---------HHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCccc
Q 042063 142 -QYH---------DRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTK 211 (575)
Q Consensus 142 -~~h---------Dr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~K 211 (575)
+.| .+-.-+.+. +. ..+ ... .+||++|.+.+-|....|..+++.-+.+||.|+-||=-. .|.
T Consensus 166 ~L~~rG~~t~~~Y~~~~vdl~~-i~-~lk---~~~--~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~-~pd 237 (266)
T PRK13398 166 VLCERGIRTFETYTRNTLDLAA-VA-VIK---ELS--HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP-EPE 237 (266)
T ss_pred EEEECCCCCCCCCCHHHHHHHH-HH-HHH---hcc--CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC-Ccc
Confidence 000 000000000 00 000 112 399999999999887888999999999999999999543 233
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHH
Q 042063 212 KCGHMAGKVLVAISEHINRLVAARL 236 (575)
Q Consensus 212 kCGH~~Gk~Lvp~~E~v~RL~AAR~ 236 (575)
|-. .+++.-++++|+-.-++.+|.
T Consensus 238 ~a~-~D~~~sl~p~~l~~l~~~i~~ 261 (266)
T PRK13398 238 KAL-SDARQTLNFEEMKELVDELKP 261 (266)
T ss_pred ccC-CchhhcCCHHHHHHHHHHHHH
Confidence 332 366677777777666666654
No 27
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=90.29 E-value=3.5 Score=42.74 Aligned_cols=83 Identities=20% Similarity=0.123 Sum_probs=55.5
Q ss_pred HHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeeccc-c--cCchHHHHH
Q 042063 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAE-A--ATLIQTNVD 264 (575)
Q Consensus 188 ~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~-~--a~~l~~aId 264 (575)
-.++.++++|+.+|-.-|.+ +.-..||.++ ..++.+|++..+++++... +.++ |++ |.. . ....+++++
T Consensus 23 ~sA~l~e~aG~d~i~vGds~-~~~~lG~pDt-~~vtl~em~~~~~~V~r~~---~~p~-via--D~~fg~y~~~~~~av~ 94 (254)
T cd06557 23 PTAKLADEAGVDVILVGDSL-GMVVLGYDST-LPVTLDEMIYHTRAVRRGA---PRAL-VVA--DMPFGSYQTSPEQALR 94 (254)
T ss_pred HHHHHHHHcCCCEEEECHHH-HHHHcCCCCC-CCcCHHHHHHHHHHHHhcC---CCCe-EEE--eCCCCcccCCHHHHHH
Confidence 34688899999999998886 3445676544 5899999999999988655 2444 444 443 2 234777777
Q ss_pred HHH-Hhhh-hccCCCCC
Q 042063 265 TRD-HQFI-LGVTNPNL 279 (575)
Q Consensus 265 ~R~-~aYi-~Gat~~~~ 279 (575)
|. +.|. .|+...++
T Consensus 95 -~a~r~~~~aGa~aVki 110 (254)
T cd06557 95 -NAARLMKEAGADAVKL 110 (254)
T ss_pred -HHHHHHHHhCCeEEEE
Confidence 54 4555 55544333
No 28
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=89.54 E-value=1.6 Score=46.05 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=115.7
Q ss_pred HHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHHHHHH
Q 042063 189 LCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRDH 268 (575)
Q Consensus 189 lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId~R~~ 268 (575)
.++.++++|..+|-+-=-... -.+|..++ .+++.+|++.+++.+..+. +.+ |++=-|.--.+.+ .+.+--+
T Consensus 27 SAri~e~aGf~ai~~ss~~va-~slG~pD~-g~l~~~e~~~~~~~I~~~~---~lP--v~aD~d~GyG~~~--~v~~tV~ 97 (290)
T TIGR02321 27 VAKLAEQAGFGGIWGSGFELS-ASYAVPDA-NILSMSTHLEMMRAIASTV---SIP--LIADIDTGFGNAV--NVHYVVP 97 (290)
T ss_pred HHHHHHHcCCCEEEECHHHHH-HHCCCCCc-ccCCHHHHHHHHHHHHhcc---CCC--EEEECCCCCCCcH--HHHHHHH
Confidence 467888899999887543211 12564443 5899999999998887554 233 5555554333333 3543466
Q ss_pred hhh-hccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcc
Q 042063 269 QFI-LGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSS 347 (575)
Q Consensus 269 aYi-~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~ 347 (575)
.|+ .|+...+++ | + .|.+++.+..-. ...+ .+ ...+..+
T Consensus 98 ~~~~aGvagi~IE-----D--------q-----------~~pk~cg~~~~g---~~~l--------~~---~ee~~~k-- 137 (290)
T TIGR02321 98 QYEAAGASAIVME-----D--------K-----------TFPKDTSLRTDG---RQEL--------VR---IEEFQGK-- 137 (290)
T ss_pred HHHHcCCeEEEEe-----C--------C-----------CCCcccccccCC---Cccc--------cC---HHHHHHH--
Confidence 777 444332221 0 0 022222211000 0000 00 0111111
Q ss_pred cCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhc-CCcCcEEeeccCCCCHHHHHhHHhhhh
Q 042063 348 YDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAF-APHADLIWMETASPDLAECTKFAGGIK 426 (575)
Q Consensus 348 ~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~-apyaDl~W~Et~~P~l~~a~~Fa~~i~ 426 (575)
|+++++. -.+.+++++ .||-- |....|++-||+|+.+| .--||+|++|....+.++.++|.+.|.
T Consensus 138 ------I~Aa~~a---~~~~d~~I~---ARTDa--~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 138 ------IAAATAA---RADRDFVVI---ARVEA--LIAGLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_pred ------HHHHHHh---CCCCCEEEE---EEecc--ccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC
Confidence 1122211 112333333 33321 11234679999999998 568999999986678899999999885
Q ss_pred hcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcC-ceeeeecchhhhhhhhhHHHHHHHHHHhh
Q 042063 427 SKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLG-FCWQFITLAGFHADALVVDTFAKDYARRG 494 (575)
Q Consensus 427 ~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G-~~~Q~ItLaG~H~~~~~~~~la~~~~~~G 494 (575)
..-| +. +-|. .-..++.+ +|.++| |.........+-....++.+.++.++++|
T Consensus 204 ~p~p---v~--~~~~---~~p~~~~~-------~l~~lg~~~~v~~g~~~~~aa~~a~~~~~~~i~~~g 257 (290)
T TIGR02321 204 GKVP---LV--LVPT---AYPQLTEA-------DIAALSKVGIVIYGNHAIRAAVGAVREVFARIRRDG 257 (290)
T ss_pred CCCC---eE--EecC---CCCCCCHH-------HHHHhcCCcEEEEChHHHHHHHHHHHHHHHHHHHcC
Confidence 4223 21 2221 01124443 455665 65533333334444445555555555444
No 29
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=88.41 E-value=1.7 Score=46.77 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=100.6
Q ss_pred HHHhhhhCCCceeecCCCCHHHHHHHHccCCeEeechHHHhhc-----cCCCCCCCCCC---CCC-CcCcHHHHHHHHHH
Q 042063 69 TLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST-----HTSTNEPGPDL---ADY-PYDTVPNKVEHLFF 139 (575)
Q Consensus 69 lL~~~~~~~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~-----~~~~~~g~PD~---~~~-p~~tv~~~v~rI~~ 139 (575)
+|++..+.-+.-++-.++|+-++-.+++..+.+.+.+..+-.. ++ ..+.|=. ++. +++++...++.|..
T Consensus 148 ~L~~~~~~~Gl~v~tev~d~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va--~~~kPViLk~G~~~ti~E~l~A~e~i~~ 225 (335)
T PRK08673 148 LLAEAREETGLPIVTEVMDPRDVELVAEYVDILQIGARNMQNFDLLKEVG--KTNKPVLLKRGMSATIEEWLMAAEYILA 225 (335)
T ss_pred HHHHHHHHcCCcEEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHH--cCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3444333446677779999999877666678888888765431 11 2333322 322 67788888888752
Q ss_pred H-----hhhhH--HHH---HHHHhhcc--HhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 140 A-----QQYHD--RKQ---REARMSMS--REERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 140 a-----q~~hD--r~q---~~~r~~~~--~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
. -+.|= +.- ....+.+. ...+ ... .+|||+|.+++-|...-|.-+.+.-+.+||.|+.||=-.
T Consensus 226 ~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk---~~~--~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 226 EGNPNVILCERGIRTFETATRNTLDLSAVPVIK---KLT--HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHP 300 (335)
T ss_pred cCCCeEEEEECCCCCCCCcChhhhhHHHHHHHH---Hhc--CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecC
Confidence 1 01110 000 00000000 0000 112 399999999998877778888999999999999999664
Q ss_pred CcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcC
Q 042063 208 SVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMG 242 (575)
Q Consensus 208 ~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g 242 (575)
.|.|-. .+|+.-++.+|+-.-++.+|.....+|
T Consensus 301 -~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 301 -DPEKAL-SDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred -CcccCC-CcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 344443 467777888888777777776555555
No 30
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.14 E-value=2.7 Score=44.24 Aligned_cols=113 Identities=7% Similarity=0.005 Sum_probs=74.7
Q ss_pred CCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCc
Q 042063 179 GFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATL 258 (575)
Q Consensus 179 GfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~ 258 (575)
|==+.....++++.+++.|+.||-+ ||+.|--..++.+|..+=+++++.+.+ ..+-||+=+= +..
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v---------~GstGE~~~Lt~eEr~~v~~~~~~~~~---grvpvi~Gv~---~~~ 88 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILT---------MGTFGECATLTWEEKQAFVATVVETVA---GRVPVFVGAT---TLN 88 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE---------CcccccchhCCHHHHHHHHHHHHHHhC---CCCCEEEEec---cCC
Confidence 4336778899999999999999986 344455577899999988888887653 3444444332 235
Q ss_pred hHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHC---CCCHHHHHHHHHHHHhc---CCccccc
Q 042063 259 IQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAA---GKTGAELQAIEDNWIAM---AGLKTFS 318 (575)
Q Consensus 259 l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~---g~s~~ei~~~~~~W~~~---~~l~tf~ 318 (575)
..++|+ +++.+.. .|+|+++. ..+ ..+.++|.++-++-.+. .||+.|+
T Consensus 89 t~~ai~-~a~~A~~----------~Gad~vlv-~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 89 TRDTIA-RTRALLD----------LGADGTML-GRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred HHHHHH-HHHHHHH----------hCCCEEEE-CCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEc
Confidence 678888 7777652 33443333 111 23567777776666653 5888775
No 31
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=85.27 E-value=4.3 Score=43.95 Aligned_cols=86 Identities=23% Similarity=0.279 Sum_probs=53.5
Q ss_pred CCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 042063 77 GTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSM 155 (575)
Q Consensus 77 ~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~ 155 (575)
+.|+++=|+.++--|....+ |.++|.+|+.+ .- ..|.+..+++ .+..|.++
T Consensus 221 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhG-Gr--------~ld~~~~~~~----~l~~i~~a--------------- 272 (351)
T cd04737 221 GLPVIVKGIQSPEDADVAINAGADGIWVSNHG-GR--------QLDGGPASFD----SLPEIAEA--------------- 272 (351)
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCC-Cc--------cCCCCchHHH----HHHHHHHH---------------
Confidence 57999999999888876555 89999998743 11 1132222222 33333221
Q ss_pred cHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccC
Q 042063 156 SREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQ 206 (575)
Q Consensus 156 ~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ 206 (575)
+...+|||+|+ |..+-...+|.+. .||.||.|---
T Consensus 273 ----------~~~~i~vi~dG-----GIr~g~Di~kaLa-lGA~~V~iGr~ 307 (351)
T cd04737 273 ----------VNHRVPIIFDS-----GVRRGEHVFKALA-SGADAVAVGRP 307 (351)
T ss_pred ----------hCCCCeEEEEC-----CCCCHHHHHHHHH-cCCCEEEECHH
Confidence 11128999995 4444455556665 99999988653
No 32
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=85.22 E-value=3.5 Score=43.09 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHhhhhC-CCceeecCCCCHHHHHHHHc-cCCeEeech
Q 042063 67 WRTLKTHQAN-GTASRTFGALDPVQVTMMAK-HLDSIYVSG 105 (575)
Q Consensus 67 ~~lL~~~~~~-~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG 105 (575)
|+.++++.+. +.|+++-++.++-.|+.+.+ |.++|.+++
T Consensus 161 ~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~ 201 (299)
T cd02809 161 WDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcC
Confidence 3444444433 57888888988888876665 899999987
No 33
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=85.07 E-value=3.9 Score=44.55 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=59.8
Q ss_pred HHHHHhhhh-CCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhh
Q 042063 67 WRTLKTHQA-NGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYH 144 (575)
Q Consensus 67 ~~lL~~~~~-~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~h 144 (575)
|+.|+.+.+ -+.|+++=|+.++-.|....+ |.++|.+|+.+-- ..|.+.-+++.+++.++.+
T Consensus 217 w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGr---------q~~~~~a~~~~L~ei~~av------- 280 (367)
T TIGR02708 217 PRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGR---------QLDGGPAAFDSLQEVAEAV------- 280 (367)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCcc---------CCCCCCcHHHHHHHHHHHh-------
Confidence 444444322 257999999999888876665 8999999996621 1122222333333332211
Q ss_pred HHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccC
Q 042063 145 DRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQ 206 (575)
Q Consensus 145 Dr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ 206 (575)
..+ +|||+|+ |.-+-...+|.+. .||.+|-|---
T Consensus 281 --------------------~~~--i~vi~dG-----GIr~g~Dv~KaLa-lGAd~V~igR~ 314 (367)
T TIGR02708 281 --------------------DKR--VPIVFDS-----GVRRGQHVFKALA-SGADLVALGRP 314 (367)
T ss_pred --------------------CCC--CcEEeeC-----CcCCHHHHHHHHH-cCCCEEEEcHH
Confidence 123 8999995 4444456667777 99999988654
No 34
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=84.43 E-value=3.6 Score=42.49 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCceeec-CCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhh
Q 042063 77 GTASRTF-GALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMS 154 (575)
Q Consensus 77 ~~~l~~~-Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~ 154 (575)
.++.++| ---|++-|+++++ |..+|.-=|.-|.+ +.|+-+ +..++.|..
T Consensus 122 eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS-----g~Gi~n---------~~~l~~i~~--------------- 172 (247)
T PF05690_consen 122 EGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS-----GRGIQN---------PYNLRIIIE--------------- 172 (247)
T ss_dssp TT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT--------SST---------HHHHHHHHH---------------
T ss_pred CCCEEeecCCCCHHHHHHHHHCCCCEEEeccccccc-----CcCCCC---------HHHHHHHHH---------------
Confidence 4566666 5568888988887 89999988877765 455532 455666642
Q ss_pred ccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 155 MSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 155 ~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
..+ +|||+|+ |-|.+.++.. ..|.|+.||-+.=-+
T Consensus 173 ----------~~~--vPvIvDA--GiG~pSdaa~----AMElG~daVLvNTAi 207 (247)
T PF05690_consen 173 ----------RAD--VPVIVDA--GIGTPSDAAQ----AMELGADAVLVNTAI 207 (247)
T ss_dssp ----------HGS--SSBEEES-----SHHHHHH----HHHTT-SEEEESHHH
T ss_pred ----------hcC--CcEEEeC--CCCCHHHHHH----HHHcCCceeehhhHH
Confidence 135 9999987 8888876654 457999999887654
No 35
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=83.56 E-value=7.4 Score=44.08 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhC--CCceeecCCCCHHHHHHHHc-cCCeEeech---HHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHH
Q 042063 65 KLWRTLKTHQAN--GTASRTFGALDPVQVTMMAK-HLDSIYVSG---WQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLF 138 (575)
Q Consensus 65 kL~~lL~~~~~~--~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG---~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~ 138 (575)
..|+.++...+. +.+++.-|+-++-.|+.+.+ |+++|-+|. ..|..- -.+..|.|- .+-...+.++.
T Consensus 275 ~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~-~~~~~g~~~------~~~i~~~~~~~ 347 (505)
T PLN02274 275 YQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQ-EVCAVGRGQ------ATAVYKVASIA 347 (505)
T ss_pred HHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCc-cccccCCCc------ccHHHHHHHHH
Confidence 334555544432 34555668999999987665 899998853 222110 001223332 22233344443
Q ss_pred HHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcc
Q 042063 139 FAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVT 210 (575)
Q Consensus 139 ~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~ 210 (575)
+ ..+ +|||||+--. ++ ...+| ...+||.+|.+---..++
T Consensus 348 ~-------------------------~~~--vpVIadGGI~--~~---~di~k-Ala~GA~~V~vGs~~~~t 386 (505)
T PLN02274 348 A-------------------------QHG--VPVIADGGIS--NS---GHIVK-ALTLGASTVMMGSFLAGT 386 (505)
T ss_pred H-------------------------hcC--CeEEEeCCCC--CH---HHHHH-HHHcCCCEEEEchhhccc
Confidence 2 234 9999996333 33 33344 445899999986654333
No 36
>PRK00208 thiG thiazole synthase; Reviewed
Probab=83.36 E-value=16 Score=38.06 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=66.3
Q ss_pred CCceee-cCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhh
Q 042063 77 GTASRT-FGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMS 154 (575)
Q Consensus 77 ~~~l~~-~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~ 154 (575)
.++.++ ..+-|+..|+.+++ |.++|-.=|.-+.+ +.| ... ++.++.|..
T Consensus 122 ~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGs-----g~g--------i~~-~~~i~~i~e--------------- 172 (250)
T PRK00208 122 EGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGS-----GLG--------LLN-PYNLRIIIE--------------- 172 (250)
T ss_pred CCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCC-----CCC--------CCC-HHHHHHHHH---------------
Confidence 456666 68888888887776 77777443323322 222 222 556666642
Q ss_pred ccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHH
Q 042063 155 MSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAA 234 (575)
Q Consensus 155 ~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AA 234 (575)
..+ +|||+|+ |.|.+..+. ...+.|+.||-+-=-.. .+..+..=+.-|+.-++|-
T Consensus 173 ----------~~~--vpVIvea--GI~tpeda~----~AmelGAdgVlV~SAIt-------ka~dP~~ma~af~~Av~aG 227 (250)
T PRK00208 173 ----------QAD--VPVIVDA--GIGTPSDAA----QAMELGADAVLLNTAIA-------VAGDPVAMARAFKLAVEAG 227 (250)
T ss_pred ----------hcC--CeEEEeC--CCCCHHHHH----HHHHcCCCEEEEChHhh-------CCCCHHHHHHHHHHHHHHH
Confidence 134 8999995 888776554 45569999998765442 1233444455666666666
Q ss_pred HHhh
Q 042063 235 RLQF 238 (575)
Q Consensus 235 R~a~ 238 (575)
|.+.
T Consensus 228 r~a~ 231 (250)
T PRK00208 228 RLAY 231 (250)
T ss_pred HHHH
Confidence 6654
No 37
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=81.22 E-value=5.2 Score=41.47 Aligned_cols=110 Identities=12% Similarity=0.164 Sum_probs=73.5
Q ss_pred CchHHHHHHHHHHHc-CceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchH
Q 042063 182 GTTATVKLCKLFVER-GAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQ 260 (575)
Q Consensus 182 g~~nv~~lvk~~ieA-GaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~ 260 (575)
+.....++++.+++. |+.||-+ ||+.|--...+.+|-.+=+++++.+.+ ..+-||+=+- ...+.
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~---------~GstGE~~~Lt~~Er~~~~~~~~~~~~---~~~~viagv~---~~~~~ 83 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYV---------NGSTGEGFLLSVEERKQIAEIVAEAAK---GKVTLIAHVG---SLNLK 83 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE---------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCeEEeccC---CCCHH
Confidence 567789999999999 9999976 455555577888998888888876543 3555665432 23567
Q ss_pred HHHHHHHHhhh-hccCCCCCCcchHHHHHHHHHHC---CCCHHHHHHHHHHHHhc---CCcccccH
Q 042063 261 TNVDTRDHQFI-LGVTNPNLRGKALASILAEAMAA---GKTGAELQAIEDNWIAM---AGLKTFSE 319 (575)
Q Consensus 261 ~aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s~---g~s~~ei~~~~~~W~~~---~~l~tf~e 319 (575)
++|+ .++... .|+ |+++. ..+ ..+.++|.++-++-.+. .||+.|+.
T Consensus 84 ~ai~-~a~~a~~~Ga-----------d~v~~-~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 84 ESQE-LAKHAEELGY-----------DAISA-ITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HHHH-HHHHHHHcCC-----------CEEEE-eCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 7888 666655 444 33332 111 24667888877777664 48887764
No 38
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=81.11 E-value=22 Score=37.00 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=67.9
Q ss_pred HHhhhhCCCceee-cCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHH
Q 042063 70 LKTHQANGTASRT-FGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRK 147 (575)
Q Consensus 70 L~~~~~~~~~l~~-~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~ 147 (575)
-+++.+ .++.++ ..+-|+..|+.+++ |..+|-.=|.-+.+ +.| ... ++.++.|..
T Consensus 116 a~~L~~-~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGs-----g~G--------i~~-~~~I~~I~e-------- 172 (248)
T cd04728 116 AEILVK-EGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS-----GQG--------LLN-PYNLRIIIE-------- 172 (248)
T ss_pred HHHHHH-CCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCC-----CCC--------CCC-HHHHHHHHH--------
Confidence 344433 456666 67888888887776 77777443323322 222 222 677776642
Q ss_pred HHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHH
Q 042063 148 QREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEH 227 (575)
Q Consensus 148 q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~ 227 (575)
..+ +|||+| .|.|.+..+ +...+.||.||-+-=-.. .+..+..=+.-|
T Consensus 173 -----------------~~~--vpVI~e--gGI~tpeda----~~AmelGAdgVlV~SAIt-------~a~dP~~ma~af 220 (248)
T cd04728 173 -----------------RAD--VPVIVD--AGIGTPSDA----AQAMELGADAVLLNTAIA-------KAKDPVAMARAF 220 (248)
T ss_pred -----------------hCC--CcEEEe--CCCCCHHHH----HHHHHcCCCEEEEChHhc-------CCCCHHHHHHHH
Confidence 134 899998 577777554 455669999998765441 223344445556
Q ss_pred HHHHHHHHHhh
Q 042063 228 INRLVAARLQF 238 (575)
Q Consensus 228 v~RL~AAR~a~ 238 (575)
..-+.|-|.+.
T Consensus 221 ~~Av~aGr~a~ 231 (248)
T cd04728 221 KLAVEAGRLAY 231 (248)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 39
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=80.06 E-value=6.4 Score=40.73 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=72.6
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....+++..+++.|+.||-+ ||+.|--...+.+|-.+=++.++...+ ...-|++=+ .+..+.+
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~---------~GstGE~~~Ls~~Er~~~~~~~~~~~~---~~~~vi~gv---~~~s~~~ 81 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVV---------VGTTGESPTLSHEEHKKVIEFVVDLVN---GRVPVIAGT---GSNATEE 81 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE---------CccCcccccCCHHHHHHHHHHHHHHhC---CCCeEEEeC---CCccHHH
Confidence 5677899999999999999986 455555578899999888887776543 234344433 2345778
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHH--CCCCHHHHHHHHHHHHh--cCCcccccH
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMA--AGKTGAELQAIEDNWIA--MAGLKTFSE 319 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s--~g~s~~ei~~~~~~W~~--~~~l~tf~e 319 (575)
+|+ +++.+. .|+ |+++...- -..+.++|.++-++-.+ ..||+.|+-
T Consensus 82 ~i~-~a~~a~~~Ga-----------d~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 82 AIS-LTKFAEDVGA-----------DGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred HHH-HHHHHHHcCC-----------CEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 888 776665 443 33332110 12366777777666655 368887764
No 40
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=79.86 E-value=6.3 Score=41.39 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=49.0
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHH
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAAR 235 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR 235 (575)
+|||+|.-.+-|--.-|--+++.-+.+||.||.||=-- .|. |-..++++-+.+++|-+-+...+
T Consensus 215 LPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp-~P~-~AlsD~~Qql~~~~f~~l~~~~~ 278 (286)
T COG2876 215 LPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHP-DPE-KALSDAKQQLTPEEFEELVKELR 278 (286)
T ss_pred CCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecC-Ccc-cccCcccccCCHHHHHHHHHHHH
Confidence 99999999999987778889999999999999999654 232 22336777777777665555554
No 41
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=79.35 E-value=7.4 Score=40.72 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=90.3
Q ss_pred CCceeecCCCCHHHHHHHHccCCeEeechHHHhhc-----cCCCCCCC--CCCCCCCcCcHHHHHHHHHHHhhhhHHHHH
Q 042063 77 GTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST-----HTSTNEPG--PDLADYPYDTVPNKVEHLFFAQQYHDRKQR 149 (575)
Q Consensus 77 ~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~-----~~~~~~g~--PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~ 149 (575)
-+.-++-.++|+-++..+++..+.+++...-|=.+ ++-+..+. --....+.+++...++.|...= +
T Consensus 80 ~GlpvvTeV~~~~~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~G---n---- 152 (264)
T PRK05198 80 FGVPVLTDVHEPEQAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAG---N---- 152 (264)
T ss_pred HCCceEEEeCCHHHHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcC---C----
Confidence 35666679999999887777888888887443110 11111111 1122356678888888885310 0
Q ss_pred HHHhhccHhhhhcC-----CCCC---------CCCceeeeCCCC-----------CCCchHHHHHHHHHHHcCceEEEec
Q 042063 150 EARMSMSREERART-----PCVD---------YLKPIIADGDTG-----------FGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 150 ~~r~~~~~e~~~~~-----~~vd---------~~lPIIAD~DtG-----------fGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
.++-+. +|+.+ ..+| ..+|||+|.=++ =|...-|.-+++.-+.+||.|+.||
T Consensus 153 -~~vilc--ERG~tf~y~r~~~D~~~vp~~k~~~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iE 229 (264)
T PRK05198 153 -DKIILC--ERGTSFGYNNLVVDMRGLPIMRETGAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIE 229 (264)
T ss_pred -CeEEEE--eCCCCcCCCCeeechhhhHHHhhCCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 000000 11111 0001 128999999986 4667778889999999999999999
Q ss_pred cCCCcccccCCCCCCcccCHHHHHHHHHHHHH
Q 042063 205 DQSSVTKKCGHMAGKVLVAISEHINRLVAARL 236 (575)
Q Consensus 205 DQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~ 236 (575)
=-- .|.+ .-.+|..-++.+++-.-|+..+.
T Consensus 230 vHp-dP~~-AlsDg~q~l~~~~~~~ll~~l~~ 259 (264)
T PRK05198 230 THP-DPDN-ALSDGPNMLPLDKLEPLLEQLKA 259 (264)
T ss_pred eCC-Cccc-cCCCccccCCHHHHHHHHHHHHH
Confidence 553 3332 22367788888877766665553
No 42
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=78.60 E-value=8.5 Score=40.19 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=86.0
Q ss_pred CceeecCCCCHHHHHHHHccCCeEeechHHHhh-----ccCCCCCCC--CCCCCCCcCcHHHHHHHHHHHhhhhHHHHHH
Q 042063 78 TASRTFGALDPVQVTMMAKHLDSIYVSGWQCSS-----THTSTNEPG--PDLADYPYDTVPNKVEHLFFAQQYHDRKQRE 150 (575)
Q Consensus 78 ~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa-----~~~~~~~g~--PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~ 150 (575)
+.-++-.++|+-++-.+++..+.+++...-|=. .++.+..+. --....+.+++...++.|...= +
T Consensus 73 glpvvTeV~~~~~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~G---n----- 144 (258)
T TIGR01362 73 GVPILTDVHESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTG---N----- 144 (258)
T ss_pred CCceEEEeCCHHHHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcC---C-----
Confidence 455566888888887777778888887743321 011111111 1122356667888888775420 0
Q ss_pred HHhhccHhhhhcC-----CCCC---------CCCceeeeCCCC-----------CCCchHHHHHHHHHHHcCceEEEecc
Q 042063 151 ARMSMSREERART-----PCVD---------YLKPIIADGDTG-----------FGGTTATVKLCKLFVERGAAGVHIED 205 (575)
Q Consensus 151 ~r~~~~~e~~~~~-----~~vd---------~~lPIIAD~DtG-----------fGg~~nv~~lvk~~ieAGaAGIhIED 205 (575)
.++-+. +|+.+ ..+| ..+|||+|.=++ =|...-|.-+++.-+.+||.|+.||=
T Consensus 145 ~~viLc--ERG~tf~y~r~~~D~~~ip~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 145 KNILLC--ERGTSFGYNNLVVDMRSLPIMRELGCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred CcEEEE--eCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 000000 11111 0001 038999999986 46667788999999999999999996
Q ss_pred CCCcccccCCCCCCcccCHHHHHHHHHHHH
Q 042063 206 QSSVTKKCGHMAGKVLVAISEHINRLVAAR 235 (575)
Q Consensus 206 Q~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR 235 (575)
-. .|.+ ...+|...++.+++-.-|+..+
T Consensus 223 Hp-dP~~-AlsDg~q~l~~~~~~~ll~~l~ 250 (258)
T TIGR01362 223 HP-DPKN-AKSDGPNMLPLSELEGLLEKLL 250 (258)
T ss_pred CC-Cccc-cCCCccccCCHHHHHHHHHHHH
Confidence 53 3332 2236777787777655555444
No 43
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=78.37 E-value=7 Score=40.67 Aligned_cols=109 Identities=13% Similarity=0.013 Sum_probs=70.9
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+- |+.+--...+.+|..+-++.++.+.+ ..+-||+=+- . ...+
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~---------GstGE~~~Ls~eEr~~l~~~~~~~~~---~~~pvi~gv~---~-~t~~ 82 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAA---------GGTGEFFSLTPDEYAQVVRAAVEETA---GRVPVLAGAG---Y-GTAT 82 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC---------cCCcCcccCCHHHHHHHHHHHHHHhC---CCCCEEEecC---C-CHHH
Confidence 56778999999999999999864 44455577889998888887776543 3443444442 2 4677
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHH--CCCCHHHHHHHHHHHHh--cCCccccc
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMA--AGKTGAELQAIEDNWIA--MAGLKTFS 318 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s--~g~s~~ei~~~~~~W~~--~~~l~tf~ 318 (575)
+++ ..+.+. .|+ |+++...- ...+.++|.++-++-.+ ..||+.|+
T Consensus 83 ~i~-~a~~a~~~Ga-----------d~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 83 AIA-YAQAAEKAGA-----------DGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred HHH-HHHHHHHhCC-----------CEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 787 666665 444 33322110 12356777776666655 46888887
No 44
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=78.23 E-value=7.3 Score=40.61 Aligned_cols=108 Identities=8% Similarity=-0.017 Sum_probs=72.4
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+ ||+.+--..++.+|..+=++.++.+.+ ..+-||+=+- . .+.+
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v---------~GstGE~~~Lt~eEr~~v~~~~~~~~~---g~~pvi~gv~---~-~t~~ 87 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFA---------AGGTGEFFSLTPAEYEQVVEIAVSTAK---GKVPVYTGVG---G-NTSD 87 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE---------CCCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---c-cHHH
Confidence 5677899999999999999986 344555578899999888888876542 3455555552 2 3788
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHHC---CCCHHHHHHHHHHHHh--cCCccccc
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMAA---GKTGAELQAIEDNWIA--MAGLKTFS 318 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s~---g~s~~ei~~~~~~W~~--~~~l~tf~ 318 (575)
+|+ +++.+. .|+ |+++. ..+ ..+.++|.++-++-.+ ..|++.|+
T Consensus 88 ai~-~a~~a~~~Ga-----------dav~~-~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 88 AIE-IARLAEKAGA-----------DGYLL-LPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HHH-HHHHHHHhCC-----------CEEEE-CCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 888 777665 443 33322 111 2356677776666555 35888887
No 45
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.05 E-value=7 Score=42.46 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=107.1
Q ss_pred cCCCCCCCCCCCHHHHHHhhCCccccCCchHHHHHHHHHHHhhhhCCCceeecCCCCHHHHHHHHccCCeEeechHHHhh
Q 042063 31 SERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSS 110 (575)
Q Consensus 31 ~~R~~~i~R~Yta~~v~~~rgs~~~~y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa 110 (575)
...|+.=++||+- +| .+ .+=.+.|++..+.-+..++-.++|+-++-.+++..+.+++.+..+-.
T Consensus 134 ~g~~kpRtsp~sf------~G---------~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d~lqIga~~~~n 197 (352)
T PRK13396 134 GGAYKPRTSPYAF------QG---------HG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVADVIQVGARNMQN 197 (352)
T ss_pred eeeecCCCCCccc------CC---------ch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCCeEEECcccccC
Confidence 5666666666654 33 12 22233344433344666777888888876666667777777765533
Q ss_pred c-----cCCCCCCCCC---CCCC-CcCcHHHHHHHHHHHhhhhHHHHHHHH-----h-hccH---------hhhhcCCCC
Q 042063 111 T-----HTSTNEPGPD---LADY-PYDTVPNKVEHLFFAQQYHDRKQREAR-----M-SMSR---------EERARTPCV 166 (575)
Q Consensus 111 ~-----~~~~~~g~PD---~~~~-p~~tv~~~v~rI~~aq~~hDr~q~~~r-----~-~~~~---------e~~~~~~~v 166 (575)
. ++ ..+.|= -++. +++++...++.|...= -++ .---+| . ..+. .-+ ...
T Consensus 198 ~~LL~~va--~t~kPVllk~G~~~t~ee~~~A~e~i~~~G-n~~-viL~erG~rtf~s~y~~~~~dl~ai~~lk---~~~ 270 (352)
T PRK13396 198 FSLLKKVG--AQDKPVLLKRGMAATIDEWLMAAEYILAAG-NPN-VILCERGIRTFDRQYTRNTLDLSVIPVLR---SLT 270 (352)
T ss_pred HHHHHHHH--ccCCeEEEeCCCCCCHHHHHHHHHHHHHcC-CCe-EEEEecCCccCcCCCCCCCcCHHHHHHHH---Hhh
Confidence 1 11 223332 1333 6777777777774210 000 000000 0 0000 000 012
Q ss_pred CCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcC
Q 042063 167 DYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMG 242 (575)
Q Consensus 167 d~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g 242 (575)
.+|||+|.=.+=|-...+.-+.+.-+.+||.|+.||=-. .|.+-. .+++.-++.+++-+-++.+|.....+|
T Consensus 271 --~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~-~pd~Al-sD~~qsl~p~~~~~l~~~i~~i~~~~g 342 (352)
T PRK13396 271 --HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP-NPAKAL-SDGPQSLTPDRFDRLMQELAVIGKTVG 342 (352)
T ss_pred --CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC-CcccCC-ChhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 399999999987766677789999999999999999654 343332 267777888888777777776555555
No 46
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=77.96 E-value=14 Score=39.44 Aligned_cols=27 Identities=7% Similarity=-0.011 Sum_probs=20.7
Q ss_pred CceeecCCCCHHHHHHHHc-cCCeEeec
Q 042063 78 TASRTFGALDPVQVTMMAK-HLDSIYVS 104 (575)
Q Consensus 78 ~~l~~~Ga~D~~sA~~~a~-gf~AIy~S 104 (575)
-++++.++-++-.|+.+.+ |.++|-++
T Consensus 136 v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 136 VDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred ceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 4566678888888887665 89998874
No 47
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=77.02 E-value=9.9 Score=40.16 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=85.7
Q ss_pred CCCceeecCCCCHHHHHHHHccCCeEeechHHHhhc-----cCCCCCCC--CCCCCCCcCcHHHHHHHHHHHhhhhHHHH
Q 042063 76 NGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST-----HTSTNEPG--PDLADYPYDTVPNKVEHLFFAQQYHDRKQ 148 (575)
Q Consensus 76 ~~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~-----~~~~~~g~--PD~~~~p~~tv~~~v~rI~~aq~~hDr~q 148 (575)
.-+.-++-.++|+-++-.+++..+.+++...-|=.+ ++.+..+. --...+..+++...++.|...= .
T Consensus 85 ~~GlpvvTeV~~~~~~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~G----n-- 158 (281)
T PRK12457 85 RFGVPVITDVHEVEQAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAG----N-- 158 (281)
T ss_pred HHCCceEEEeCCHHHHHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcC----C--
Confidence 335666668899988877777788888877433110 11111111 1112234467888888875420 0
Q ss_pred HHHHhhccHhhhhcC-----------------C-CCCCCCceeeeCCCC-----------CCCchHHHHHHHHHHHcCce
Q 042063 149 REARMSMSREERART-----------------P-CVDYLKPIIADGDTG-----------FGGTTATVKLCKLFVERGAA 199 (575)
Q Consensus 149 ~~~r~~~~~e~~~~~-----------------~-~vd~~lPIIAD~DtG-----------fGg~~nv~~lvk~~ieAGaA 199 (575)
.++-+. +|+.. . .+. +|||+|.=++ =|...-|.-+++.-+.+||.
T Consensus 159 --~~vilc--ERG~~fgy~~~~~D~~~ip~mk~~~t~--lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaD 232 (281)
T PRK12457 159 --DRVILC--ERGSSFGYDNLVVDMLGFRQMKRTTGD--LPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLA 232 (281)
T ss_pred --CeEEEE--eCCCCCCCCCcccchHHHHHHHhhCCC--CCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 000000 11100 0 123 8999999986 45566788899999999999
Q ss_pred EEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHH
Q 042063 200 GVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAAR 235 (575)
Q Consensus 200 GIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR 235 (575)
|+.||=-. .|.+ .-.+|...+|.+++-.-++..+
T Consensus 233 Gl~iEvHp-dP~~-AlsDg~q~l~~~~~~~l~~~l~ 266 (281)
T PRK12457 233 GLFLEAHP-DPDR-ARCDGPSALPLDQLEPFLSQVK 266 (281)
T ss_pred EEEEEecC-Cccc-cCCCcccccCHHHHHHHHHHHH
Confidence 99999553 3332 2236777788776655444443
No 48
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=76.75 E-value=7.8 Score=40.29 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=73.1
Q ss_pred CchHHHHHHHHHHH-cCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchH
Q 042063 182 GTTATVKLCKLFVE-RGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQ 260 (575)
Q Consensus 182 g~~nv~~lvk~~ie-AGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~ 260 (575)
+.....++++.+++ .|+.||-+ ||+.+--..++.+|..+=++.++...+ ..+-||+=+ .+..+.
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v---------~GstGE~~~Ls~eEr~~~~~~~~~~~~---~~~~viagv---g~~~t~ 86 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYV---------GGSTGEAFLLSTEEKKQVLEIVAEEAK---GKVKLIAQV---GSVNTA 86 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE---------CCCccccccCCHHHHHHHHHHHHHHhC---CCCCEEecC---CCCCHH
Confidence 56788999999999 99999986 355555577888999988888886553 345455544 234578
Q ss_pred HHHHHHHHhhh-hccCCCCCCcchHHHHHHHHHHC---CCCHHHHHHHHHHHHh--cCCcccccH
Q 042063 261 TNVDTRDHQFI-LGVTNPNLRGKALASILAEAMAA---GKTGAELQAIEDNWIA--MAGLKTFSE 319 (575)
Q Consensus 261 ~aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s~---g~s~~ei~~~~~~W~~--~~~l~tf~e 319 (575)
++|+ .++.+. .|+ |+++. ..+ ..+.+++.++-++-.+ +.||+.|+-
T Consensus 87 ~ai~-~a~~a~~~Ga-----------d~v~v-~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~ 138 (293)
T PRK04147 87 EAQE-LAKYATELGY-----------DAISA-VTPFYYPFSFEEICDYYREIIDSADNPMIVYNI 138 (293)
T ss_pred HHHH-HHHHHHHcCC-----------CEEEE-eCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 8888 666664 444 33322 111 2355677776666655 478888763
No 49
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=76.33 E-value=12 Score=41.00 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=30.8
Q ss_pred HHHHHhhhhC-CCceeecCCCCHHHHHHHHc-cCCeEeechHH
Q 042063 67 WRTLKTHQAN-GTASRTFGALDPVQVTMMAK-HLDSIYVSGWQ 107 (575)
Q Consensus 67 ~~lL~~~~~~-~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~ 107 (575)
|+.|+.+.+. +.|+++-|+.++-.|....+ |.++|.+|+.+
T Consensus 242 W~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhG 284 (383)
T cd03332 242 WEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHG 284 (383)
T ss_pred HHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCC
Confidence 4555544433 57999999999999887665 89999999743
No 50
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=75.35 E-value=22 Score=37.29 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCceeec-CCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhh
Q 042063 77 GTASRTF-GALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMS 154 (575)
Q Consensus 77 ~~~l~~~-Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~ 154 (575)
.++.++| ---||+-|+++++ |..+|.-=|.-|.+ +.|+.+ +..++.|..
T Consensus 136 eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS-----g~Gl~n---------~~~l~~i~e--------------- 186 (267)
T CHL00162 136 KGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS-----GQGLQN---------LLNLQIIIE--------------- 186 (267)
T ss_pred CCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC-----CCCCCC---------HHHHHHHHH---------------
Confidence 4566666 5568888988887 89999988877765 566633 445666642
Q ss_pred ccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 155 MSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 155 ~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
..+ +|||+| .|-|.+.++. ...|.|+.||-+-=-.
T Consensus 187 ----------~~~--vpVivd--AGIgt~sDa~----~AmElGaDgVL~nSaI 221 (267)
T CHL00162 187 ----------NAK--IPVIID--AGIGTPSEAS----QAMELGASGVLLNTAV 221 (267)
T ss_pred ----------cCC--CcEEEe--CCcCCHHHHH----HHHHcCCCEEeeccee
Confidence 245 999999 7888776654 5678999999876655
No 51
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=75.35 E-value=8.4 Score=39.76 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=74.6
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+=-. .+--..++.+|-.+=++.++..+ +..+-|++-+-+ ....+
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~Gs---------tGE~~~Lt~~Er~~l~~~~~~~~---~~~~~vi~gv~~---~st~~ 84 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGS---------TGEFYSLTDEERKELLEIVVEAA---AGRVPVIAGVGA---NSTEE 84 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESST---------TTTGGGS-HHHHHHHHHHHHHHH---TTSSEEEEEEES---SSHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC---------CcccccCCHHHHHHHHHHHHHHc---cCceEEEecCcc---hhHHH
Confidence 5567899999999999999987443 34446778898888888777654 456666665543 35788
Q ss_pred HHHHHHHhhhhccCCCCCCcchHHHHHHHHHHC---CCCHHHHHHHHHHHHhc--CCcccccHH
Q 042063 262 NVDTRDHQFILGVTNPNLRGKALASILAEAMAA---GKTGAELQAIEDNWIAM--AGLKTFSEC 320 (575)
Q Consensus 262 aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~---g~s~~ei~~~~~~W~~~--~~l~tf~ea 320 (575)
+|+ +++.+.. .|+|+++. ..+ ..|.++|.++-++-.+. .|++.|+.-
T Consensus 85 ~i~-~a~~a~~----------~Gad~v~v-~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 85 AIE-LARHAQD----------AGADAVLV-IPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HHH-HHHHHHH----------TT-SEEEE-EESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred HHH-HHHHHhh----------cCceEEEE-eccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 888 8777752 23333322 111 25778888877777774 588877753
No 52
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=74.56 E-value=11 Score=39.12 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=76.6
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEE
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVA 249 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiA 249 (575)
.|++-=.+.|-=+.....++++.+++.|+.||-+ ||+.|--...+.+|..+=++.++... +. + |+
T Consensus 6 ~a~~TPf~~g~iD~~~~~~li~~l~~~Gv~Gl~~---------~GstGE~~~Lt~eEr~~l~~~~~~~~---~~--v-i~ 70 (279)
T cd00953 6 TPVITPFTGNKIDKEKFKKHCENLISKGIDYVFV---------AGTTGLGPSLSFQEKLELLKAYSDIT---DK--V-IF 70 (279)
T ss_pred cceecCcCCCCcCHHHHHHHHHHHHHcCCcEEEE---------cccCCCcccCCHHHHHHHHHHHHHHc---CC--E-EE
Confidence 4444444443226778999999999999999987 45555567889999998888887654 22 3 33
Q ss_pred eecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCcccccH
Q 042063 250 RTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMA---AGKTGAELQAIEDNWIAMAGLKTFSE 319 (575)
Q Consensus 250 RTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s---~g~s~~ei~~~~~~W~~~~~l~tf~e 319 (575)
=+= +..+.++|+ +++.... .|+|+++...- +..+.++|.++-++-.+..|++.|+-
T Consensus 71 gvg---~~~~~~ai~-~a~~a~~----------~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~iYn~ 129 (279)
T cd00953 71 QVG---SLNLEESIE-LARAAKS----------FGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNY 129 (279)
T ss_pred EeC---cCCHHHHHH-HHHHHHH----------cCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEEEeC
Confidence 332 345788888 8877752 33343332110 11245667665555555788888763
No 53
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=74.49 E-value=11 Score=38.81 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=70.9
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+= |+.+--...+.+|..+=++.++... +.++.|++=+= .....+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~---------GstGE~~~lt~~Er~~l~~~~~~~~---~~~~~vi~gv~---~~~~~~ 83 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVC---------GTTGESPTLSDEEHEAVIEAVVEAV---NGRVPVIAGTG---SNNTAE 83 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC---------CCCcchhhCCHHHHHHHHHHHHHHh---CCCCcEEeccC---CccHHH
Confidence 56778999999999999999874 3334446788899888888887654 23444443322 124667
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHH--CCCCHHHHHHHHHHHHh--cCCcccccH
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMA--AGKTGAELQAIEDNWIA--MAGLKTFSE 319 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s--~g~s~~ei~~~~~~W~~--~~~l~tf~e 319 (575)
+++ +++... .|+. +++...- -..+.+++.++-++-.+ ..||+.|+-
T Consensus 84 ~~~-~a~~a~~~G~d-----------~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 84 AIE-LTKRAEKAGAD-----------AALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HHH-HHHHHHHcCCC-----------EEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 777 666554 4543 3332110 12466778777777666 578887764
No 54
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=73.53 E-value=11 Score=41.52 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=26.8
Q ss_pred CCCceeecCCCCHHHHHHHHc-cCCeEeechH
Q 042063 76 NGTASRTFGALDPVQVTMMAK-HLDSIYVSGW 106 (575)
Q Consensus 76 ~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~ 106 (575)
-+.|+++-|+.++-.|..+.+ |.++|.+|+.
T Consensus 244 ~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~h 275 (381)
T PRK11197 244 WDGPMVIKGILDPEDARDAVRFGADGIVVSNH 275 (381)
T ss_pred CCCCEEEEecCCHHHHHHHHhCCCCEEEECCC
Confidence 367999999999999987666 8999999983
No 55
>PLN02417 dihydrodipicolinate synthase
Probab=73.18 E-value=14 Score=38.26 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=70.9
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+- |+.|--...+.+|..+=++.++.+.+ ..+-|++=+- +....+
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~---------GstGE~~~ls~~Er~~~~~~~~~~~~---~~~pvi~gv~---~~~t~~ 84 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVG---------GTTGEGQLMSWDEHIMLIGHTVNCFG---GKIKVIGNTG---SNSTRE 84 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC---------ccCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEEECC---CccHHH
Confidence 56778999999999999999864 44444567889999888887776543 3344454442 234677
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCcccccH
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMAA---GKTGAELQAIEDNWIAMAGLKTFSE 319 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s~---g~s~~ei~~~~~~W~~~~~l~tf~e 319 (575)
+|+ +++.+. .|+ |+++. ..+ ..+.++|.++-++-.+..|++.|+-
T Consensus 85 ~i~-~a~~a~~~Ga-----------dav~~-~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~ 133 (280)
T PLN02417 85 AIH-ATEQGFAVGM-----------HAALH-INPYYGKTSQEGLIKHFETVLDMGPTIIYNV 133 (280)
T ss_pred HHH-HHHHHHHcCC-----------CEEEE-cCCccCCCCHHHHHHHHHHHHhhCCEEEEEC
Confidence 888 666654 444 33332 111 2356777776655554448887764
No 56
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=72.44 E-value=61 Score=33.28 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=29.5
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEecc
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIED 205 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIED 205 (575)
+||++-.-.++ +...+.++++.++++||.+|++-.
T Consensus 163 ~pv~vKl~~~~-~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 163 IPLLVKLSPYF-DLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEEc
Confidence 99999988765 344688999999999999999854
No 57
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=72.41 E-value=12 Score=38.88 Aligned_cols=162 Identities=17% Similarity=0.132 Sum_probs=94.8
Q ss_pred HHhhhhCCCceeecCCCCHHHHHHHHccCCeEeechHHHhhc---cCCCCCCCCCC---CCC-CcCcHHHHHHHHHHHhh
Q 042063 70 LKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST---HTSTNEPGPDL---ADY-PYDTVPNKVEHLFFAQQ 142 (575)
Q Consensus 70 L~~~~~~~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~---~~~~~~g~PD~---~~~-p~~tv~~~v~rI~~aq~ 142 (575)
|++..+.-+..++--++|+-++-.+.+..+.+++.+..+... -..+..|.|=. +.. +++++.+.|+.|...-
T Consensus 81 l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~G- 159 (260)
T TIGR01361 81 LRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSG- 159 (260)
T ss_pred HHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC-
Confidence 333333446777788999999876666678888888776441 00012344422 333 6778888888875310
Q ss_pred hhHHHHHHHH-h-hc-cH--h---hhhcC-CCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCccccc
Q 042063 143 YHDRKQREAR-M-SM-SR--E---ERART-PCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKC 213 (575)
Q Consensus 143 ~hDr~q~~~r-~-~~-~~--e---~~~~~-~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkC 213 (575)
-+ +.---+| . .. +. + .+... -...|.+||+.|.|..-|...-+..+.+.-+..||.|+.||=-. .|.|-
T Consensus 160 n~-~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~-t~d~a 237 (260)
T TIGR01361 160 NG-NVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP-DPEKA 237 (260)
T ss_pred CC-cEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC-Ccccc
Confidence 00 0000001 0 00 00 0 00000 00012499999999987766777788899999999999999654 23322
Q ss_pred CCCCCCcccCHHHHHHHHHHHH
Q 042063 214 GHMAGKVLVAISEHINRLVAAR 235 (575)
Q Consensus 214 GH~~Gk~Lvp~~E~v~RL~AAR 235 (575)
- .+++.-++++|+-.-++.+|
T Consensus 238 ~-~D~~~sl~p~~l~~lv~~i~ 258 (260)
T TIGR01361 238 L-SDSKQQLTPEEFKRLVKELR 258 (260)
T ss_pred C-CcchhcCCHHHHHHHHHHHh
Confidence 1 35677788888877776655
No 58
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=72.01 E-value=17 Score=37.24 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=70.7
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+=- +.+--...+.+|-.+-++.++.... ...-|++=+ ......+
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~G---------stGE~~~ls~~Er~~l~~~~~~~~~---~~~~vi~gv---~~~~~~~ 80 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLG---------TTGEAPTLTDEERKEVIEAVVEAVA---GRVPVIAGV---GANSTRE 80 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC---------CCcccccCCHHHHHHHHHHHHHHhC---CCCeEEEec---CCccHHH
Confidence 567889999999999999997644 4444567888999988888887653 344444443 2234567
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHHC---CCCHHHHHHHHHHHHh--cCCcccccH
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMAA---GKTGAELQAIEDNWIA--MAGLKTFSE 319 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s~---g~s~~ei~~~~~~W~~--~~~l~tf~e 319 (575)
+++ .++... .|+ |+++. ..+ ..+.+++.++-++-.+ ..|++.|+-
T Consensus 81 ~i~-~a~~a~~~Ga-----------d~v~v-~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 81 AIE-LARHAEEAGA-----------DGVLV-VPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred HHH-HHHHHHHcCC-----------CEEEE-CCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 777 666554 444 33332 111 1356777776666655 567787653
No 59
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=71.48 E-value=41 Score=36.64 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=54.7
Q ss_pred HHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeec---hHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhh
Q 042063 68 RTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVS---GWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQY 143 (575)
Q Consensus 68 ~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~S---G~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~ 143 (575)
+.+++.+ ++.+++.-|+.++-.|+.+.. |.++|.+| |.-|.. -.-|.--+| -+..+..+.++
T Consensus 142 k~ir~~~-p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSictt-------R~~~Gvg~p---qltAv~~~a~a--- 207 (343)
T TIGR01305 142 KLVREAF-PEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTT-------RTKTGVGYP---QLSAVIECADA--- 207 (343)
T ss_pred HHHHhhC-CCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccC-------ceeCCCCcC---HHHHHHHHHHH---
Confidence 3455443 334455555999999987665 89999988 222221 112222223 12233333321
Q ss_pred hHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEecc
Q 042063 144 HDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIED 205 (575)
Q Consensus 144 hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIED 205 (575)
.-.+.+|||+|+---+| -..+|.+. +||.+|-|--
T Consensus 208 ---------------------a~~~~v~VIaDGGIr~~-----gDI~KALA-~GAd~VMlG~ 242 (343)
T TIGR01305 208 ---------------------AHGLKGHIISDGGCTCP-----GDVAKAFG-AGADFVMLGG 242 (343)
T ss_pred ---------------------hccCCCeEEEcCCcCch-----hHHHHHHH-cCCCEEEECH
Confidence 11234999999654444 34456665 9999998863
No 60
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=71.33 E-value=13 Score=38.92 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=69.9
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+= |+.|--...+.+|-.+-++.++.+.+ ..+-||+=+- . .+.+
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~---------GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~---~-~t~~ 89 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAA---------GGTGEFFSLTPDEYSQVVRAAVETTA---GRVPVIAGAG---G-GTAQ 89 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC---------cCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---C-CHHH
Confidence 56778999999999999999863 44444567888999888888876543 3444555442 2 4677
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHH--CCCCHHHHHHHHHHHHh--cCCccccc
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMA--AGKTGAELQAIEDNWIA--MAGLKTFS 318 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s--~g~s~~ei~~~~~~W~~--~~~l~tf~ 318 (575)
+|+ ..+... .|+. +++...- ...+.++|..+-++-.+ ..||+.|+
T Consensus 90 ~i~-~~~~a~~~Gad-----------av~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 90 AIE-YAQAAERAGAD-----------GILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred HHH-HHHHHHHhCCC-----------EEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 888 666665 4543 2221000 11355666666555555 46778876
No 61
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.23 E-value=71 Score=33.02 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=26.9
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEecc
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIED 205 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIED 205 (575)
++ +||++-.-. +..++.++++.++++||.||.+-+
T Consensus 153 ~~--~Pv~vKl~~---~~~~~~~~a~~~~~~G~d~i~~~n 187 (296)
T cd04740 153 TD--VPVIVKLTP---NVTDIVEIARAAEEAGADGLTLIN 187 (296)
T ss_pred cC--CCEEEEeCC---CchhHHHHHHHHHHcCCCEEEEEC
Confidence 45 899987632 234678889999999999998854
No 62
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=70.14 E-value=17 Score=39.54 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=89.6
Q ss_pred CCCceeecCCCCHHHHHHHHccCCeEeechHHHhhc---cCCCCCCCCCC---CC-CCcCcHHHHHHHHHHH-----hhh
Q 042063 76 NGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST---HTSTNEPGPDL---AD-YPYDTVPNKVEHLFFA-----QQY 143 (575)
Q Consensus 76 ~~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~---~~~~~~g~PD~---~~-~p~~tv~~~v~rI~~a-----q~~ 143 (575)
+-+..++--++|+-++..+.+..+.+++.|..+-.. -.....|.|=. +. .+++++...|+.|... -++
T Consensus 180 ~~Gl~~~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 180 EYGLAVISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred HcCCCEEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Confidence 345666668888888876666678888888765431 00012344422 43 4677888888877531 011
Q ss_pred h-H--------HHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccC
Q 042063 144 H-D--------RKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCG 214 (575)
Q Consensus 144 h-D--------r~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCG 214 (575)
| = +...+.+. +. .-+ . .|.+||++|.|+--|....+.-+.+.-+.+||.|+.||=-- .|.+-|
T Consensus 260 erg~s~yp~~~~~~ldl~~-i~-~lk---~--~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~-dp~~a~ 331 (360)
T PRK12595 260 ERGIRTYEKATRNTLDISA-VP-ILK---Q--ETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP-DPAVAL 331 (360)
T ss_pred CCccCCCCCCCCCCcCHHH-HH-HHH---H--HhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC-CCCCCC
Confidence 1 0 00000000 00 000 0 13489999999886766667778899999999999999543 333332
Q ss_pred CCCCCcccCHHHHHHHHHHHHH
Q 042063 215 HMAGKVLVAISEHINRLVAARL 236 (575)
Q Consensus 215 H~~Gk~Lvp~~E~v~RL~AAR~ 236 (575)
.+++.-++++|+-.-++.+|.
T Consensus 332 -~D~~~sl~p~el~~l~~~i~~ 352 (360)
T PRK12595 332 -SDSAQQMDIPEFDRFLDELKP 352 (360)
T ss_pred -CchhhhCCHHHHHHHHHHHHH
Confidence 356677787777766666654
No 63
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.14 E-value=30 Score=38.37 Aligned_cols=27 Identities=7% Similarity=-0.089 Sum_probs=21.8
Q ss_pred CCceeecCCCCHHHHHHHHc-cCCeEee
Q 042063 77 GTASRTFGALDPVQVTMMAK-HLDSIYV 103 (575)
Q Consensus 77 ~~~l~~~Ga~D~~sA~~~a~-gf~AIy~ 103 (575)
+-++++.|+-++-.|+.+.+ |+++|-+
T Consensus 194 ~~~vi~g~V~T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 194 NLDLIAGNIVTKEAALDLISVGADCLKV 221 (404)
T ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEE
Confidence 34577889999999987776 8999875
No 64
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=70.09 E-value=57 Score=34.36 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=30.1
Q ss_pred CCCCCCceeeeCCCCCCC-chHHHHHHHHHHHcCceEEEec
Q 042063 165 CVDYLKPIIADGDTGFGG-TTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 165 ~vd~~lPIIAD~DtGfGg-~~nv~~lvk~~ieAGaAGIhIE 204 (575)
.++ +||++-.-.|+-. .....++++.+.++|+.+|++-
T Consensus 129 ~~~--~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 129 AVD--IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred hcC--CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEE
Confidence 355 8999988777643 3356789999999999999984
No 65
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=69.80 E-value=27 Score=39.38 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=59.9
Q ss_pred HHHHHHHhhhhC--CCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHh
Q 042063 65 KLWRTLKTHQAN--GTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQ 141 (575)
Q Consensus 65 kL~~lL~~~~~~--~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq 141 (575)
.+.++++..++. +-+++.=|+-+.-.+..+.+ |.++|=+++..=+.. +..++-+.+.-+.+.+.+.++...
T Consensus 252 ~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~---ttr~~~~~g~~~~~a~~~~~~~~~--- 325 (475)
T TIGR01303 252 KMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMC---TTRMMTGVGRPQFSAVLECAAEAR--- 325 (475)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccc---cCccccCCCCchHHHHHHHHHHHH---
Confidence 333444444433 45666656999999988776 899988766432221 123343434323333333333221
Q ss_pred hhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 142 QYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 142 ~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
..+ +|||||+ |..+-...+|.+. +||.+|-+---.
T Consensus 326 -----------------------~~~--~~viadG-----gi~~~~di~kala-~GA~~vm~g~~~ 360 (475)
T TIGR01303 326 -----------------------KLG--GHVWADG-----GVRHPRDVALALA-AGASNVMVGSWF 360 (475)
T ss_pred -----------------------HcC--CcEEEeC-----CCCCHHHHHHHHH-cCCCEEeechhh
Confidence 123 9999994 3334455566665 999999876544
No 66
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=69.77 E-value=19 Score=37.60 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=72.5
Q ss_pred CchHHHHHHHHHHHcC-ceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchH
Q 042063 182 GTTATVKLCKLFVERG-AAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQ 260 (575)
Q Consensus 182 g~~nv~~lvk~~ieAG-aAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~ 260 (575)
+.....++++.+++.| +.||-+= |+.|--...+.+|..+=+++++...+ ..+-|++=+= .....
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~---------GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~---~~~t~ 83 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVG---------GSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVG---SVNLK 83 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEEC---------CcccccccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---CCCHH
Confidence 5677899999999999 9999774 44444466789998888887776543 2333333321 23467
Q ss_pred HHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHC---CCCHHHHHHHHHHHHh---cCCcccccH
Q 042063 261 TNVDTRDHQFILGVTNPNLRGKALASILAEAMAA---GKTGAELQAIEDNWIA---MAGLKTFSE 319 (575)
Q Consensus 261 ~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~---g~s~~ei~~~~~~W~~---~~~l~tf~e 319 (575)
++|+ +++.+.. .|+|+++. ..+ ..+.++|..+-++-.+ +.||+.|+-
T Consensus 84 ~~i~-la~~a~~----------~Gad~v~v-~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~ 136 (290)
T TIGR00683 84 EAVE-LGKYATE----------LGYDCLSA-VTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSI 136 (290)
T ss_pred HHHH-HHHHHHH----------hCCCEEEE-eCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeC
Confidence 7888 7777652 34444433 222 3467888887777744 468887764
No 67
>PLN02535 glycolate oxidase
Probab=68.20 E-value=18 Score=39.57 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=30.5
Q ss_pred HHHHHhhhh-CCCceeecCCCCHHHHHHHHc-cCCeEeechHH
Q 042063 67 WRTLKTHQA-NGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQ 107 (575)
Q Consensus 67 ~~lL~~~~~-~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~ 107 (575)
|+.++.+.. -+.|+++-|+.++-.|....+ |.++|.+|+.+
T Consensus 212 W~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~G 254 (364)
T PLN02535 212 WKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHG 254 (364)
T ss_pred HHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCC
Confidence 444443322 357999999999999987665 89999999854
No 68
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=67.73 E-value=56 Score=33.54 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=29.5
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEec
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
+||++=.-.|+. ..+..++++.++++||.+|||+
T Consensus 135 ~PVsvKiR~~~~-~~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 135 KPIFVKIRGNCI-PLDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred CcEEEEeCCCCC-cchHHHHHHHHHHcCCCEEEEe
Confidence 899999998863 3467899999999999999994
No 69
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=67.09 E-value=19 Score=37.31 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=70.3
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+= |+.+--..++.+|-.+=++.++.+.+ .++-|++=+= +..+.+
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~---------Gs~GE~~~ls~~Er~~~~~~~~~~~~---~~~~vi~gv~---~~~~~~ 84 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVV---------GTTGESPTLTHEEHEELIRAVVEAVN---GRVPVIAGTG---SNSTAE 84 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC---------CcCCccccCCHHHHHHHHHHHHHHhC---CCCcEEeecC---CchHHH
Confidence 56778999999999999999863 34444567889998888888876543 3443443322 234678
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHH--CCCCHHHHHHHHHHHHh--cCCccccc
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMA--AGKTGAELQAIEDNWIA--MAGLKTFS 318 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s--~g~s~~ei~~~~~~W~~--~~~l~tf~ 318 (575)
+++ +++.+. .|+. +++...- -..+.++|.++-++-.+ +.||+.|+
T Consensus 85 ~i~-~a~~a~~~G~d-----------~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 85 AIE-LTKFAEKAGAD-----------GALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred HHH-HHHHHHHcCCC-----------EEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 888 666554 4543 3322110 12356777777666665 36778775
No 70
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=67.01 E-value=39 Score=36.35 Aligned_cols=88 Identities=22% Similarity=0.114 Sum_probs=50.8
Q ss_pred ceeecCCCCHHHHHHHHc-cCCeEeec---hHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhh
Q 042063 79 ASRTFGALDPVQVTMMAK-HLDSIYVS---GWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMS 154 (575)
Q Consensus 79 ~l~~~Ga~D~~sA~~~a~-gf~AIy~S---G~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~ 154 (575)
.++..|+-++-.|+.+.+ |.++|-+| |..|-.-. .+..|.|+-+ +..+..+.+
T Consensus 139 ~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~-~~g~g~~~~~-------l~ai~ev~~--------------- 195 (321)
T TIGR01306 139 FVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKI-KTGFGTGGWQ-------LAALRWCAK--------------- 195 (321)
T ss_pred EEEEecCCCHHHHHHHHHcCcCEEEECCCCCcccccee-eeccCCCchH-------HHHHHHHHH---------------
Confidence 366666999999887665 89999988 33221110 0122333211 122333321
Q ss_pred ccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 155 MSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 155 ~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
..+ +|||+|+---+| ...+|.+. +||.+|-+---.
T Consensus 196 ----------a~~--~pVIadGGIr~~-----~Di~KALa-~GAd~Vmig~~~ 230 (321)
T TIGR01306 196 ----------AAR--KPIIADGGIRTH-----GDIAKSIR-FGASMVMIGSLF 230 (321)
T ss_pred ----------hcC--CeEEEECCcCcH-----HHHHHHHH-cCCCEEeechhh
Confidence 234 899999654444 44555554 699999886544
No 71
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=66.94 E-value=41 Score=33.30 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=51.2
Q ss_pred HHHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhH
Q 042063 67 WRTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHD 145 (575)
Q Consensus 67 ~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hD 145 (575)
.++++...+.++..+++++.++-.+....+ |++.|-++..+.. +....+...-.+.+++|.+
T Consensus 112 ~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t-----------~~~~~~~~~~~~~l~~i~~------ 174 (219)
T cd04729 112 AELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYT-----------EETAKTEDPDFELLKELRK------ 174 (219)
T ss_pred HHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCcccc-----------ccccCCCCCCHHHHHHHHH------
Confidence 333433333345677789999887765554 7887643221110 0000111112345555532
Q ss_pred HHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEec
Q 042063 146 RKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 146 r~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
.++ +||++.+ |..++ +.++.+.+.||.||-+=
T Consensus 175 -------------------~~~--ipvia~G--GI~~~----~~~~~~l~~GadgV~vG 206 (219)
T cd04729 175 -------------------ALG--IPVIAEG--RINSP----EQAAKALELGADAVVVG 206 (219)
T ss_pred -------------------hcC--CCEEEeC--CCCCH----HHHHHHHHCCCCEEEEc
Confidence 245 9999854 44334 55677778899998764
No 72
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=66.68 E-value=21 Score=37.83 Aligned_cols=148 Identities=16% Similarity=0.110 Sum_probs=90.7
Q ss_pred CCceeecCCCCHHHHHHHHccCCeEeechHHHhhc-----cCCCCCC--CCCCCCCCcCcHHHHHHHHHHHhhhhHHHHH
Q 042063 77 GTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST-----HTSTNEP--GPDLADYPYDTVPNKVEHLFFAQQYHDRKQR 149 (575)
Q Consensus 77 ~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~-----~~~~~~g--~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~ 149 (575)
-+.-++-.++|+-++..+++..+.+++...-|-.+ ++-+..+ +--....+.+++...++.|...= .+
T Consensus 86 ~glpvvTeV~~~~q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~G--N~---- 159 (290)
T PLN03033 86 YDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAG--NP---- 159 (290)
T ss_pred HCCceEEeeCCHHHHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcC--CC----
Confidence 36677788999999887777788888888766321 1111211 11223356778888888885320 00
Q ss_pred HHHhhccHhhhhcC-C----CCC---------CCCceeeeCCCC----------------CCCchHHHHHHHHHHHcCce
Q 042063 150 EARMSMSREERART-P----CVD---------YLKPIIADGDTG----------------FGGTTATVKLCKLFVERGAA 199 (575)
Q Consensus 150 ~~r~~~~~e~~~~~-~----~vd---------~~lPIIAD~DtG----------------fGg~~nv~~lvk~~ieAGaA 199 (575)
++-+. +|+.+ . .+| ..+|||+|.=++ =|...-|.-+++.-+.+||.
T Consensus 160 --~viLc--ERG~tFgy~~lv~D~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaD 235 (290)
T PLN03033 160 --NVMVC--ERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVD 235 (290)
T ss_pred --cEEEE--eCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 00000 12111 0 001 138999999985 24567788899999999999
Q ss_pred EEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHH
Q 042063 200 GVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARL 236 (575)
Q Consensus 200 GIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~ 236 (575)
|+.||=-- .|.+- -.+|...+|.+++-.-|+..+.
T Consensus 236 GlfiEvHp-dP~~A-lsDg~q~l~~~~l~~ll~~l~~ 270 (290)
T PLN03033 236 GIFMEVHD-DPLSA-PVDGPTQWPLRHLEELLEELIA 270 (290)
T ss_pred EEEEEecC-Ccccc-CCCcccCcCHHHHHHHHHHHHH
Confidence 99999553 33322 2367788888777665555554
No 73
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=66.66 E-value=21 Score=39.03 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=27.3
Q ss_pred CCCceeecCCCCHHHHHHHHc-cCCeEeechHH
Q 042063 76 NGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQ 107 (575)
Q Consensus 76 ~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~ 107 (575)
-+.|+++=|+.++-.|....+ |.++|.+|+.+
T Consensus 223 ~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhG 255 (367)
T PLN02493 223 TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHG 255 (367)
T ss_pred cCCCEEeecCCCHHHHHHHHHcCCCEEEECCCC
Confidence 357999999999999887665 89999999965
No 74
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=65.74 E-value=15 Score=39.67 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=44.3
Q ss_pred HhHHhhhhhcCCCceeeecCCcc--cccccCCCCHHH-HHhhHHHHHhcCceeeeecchh
Q 042063 419 TKFAGGIKSKHPEIMLAYNLSPS--FNWDASGMTDEE-MKDFIPRIAKLGFCWQFITLAG 475 (575)
Q Consensus 419 ~~Fa~~i~~~~P~~~laYN~SPS--FnW~~~G~s~~~-i~~F~~~L~~~G~~~Q~ItLaG 475 (575)
.+-.++||+..|+..+.|.+||. ||+...|++.++ ...+...|.+.|+ .+|.+.+
T Consensus 213 ~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~gi--D~i~vs~ 270 (362)
T PRK10605 213 LEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGI--AYLHMSE 270 (362)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCC--CEEEecc
Confidence 47778899988776799999994 688778899888 6999999999995 5555443
No 75
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=65.31 E-value=30 Score=36.22 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=45.9
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCc-----------------ccccCCCCCCcccCH-HHHHHHH
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSV-----------------TKKCGHMAGKVLVAI-SEHINRL 231 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~-----------------~KkCGH~~Gk~Lvp~-~E~v~RL 231 (575)
+||++=.--+ ..++.++++.+.++||.||.+=+...+ ....|-+.|+.+-|. =+.+.+|
T Consensus 169 ~Pv~vKl~~~---~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~ 245 (299)
T cd02940 169 IPVIAKLTPN---ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQI 245 (299)
T ss_pred CCeEEECCCC---chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHH
Confidence 8999887543 346789999999999999985332211 112344467777665 2444444
Q ss_pred HHHHHhhhhcCCceEEEEeecc
Q 042063 232 VAARLQFDVMGVETVLVARTDA 253 (575)
Q Consensus 232 ~AAR~a~d~~g~d~vIiARTDA 253 (575)
+.+ . +.++-||+=.+-
T Consensus 246 ~~~---~---~~~ipIig~GGI 261 (299)
T cd02940 246 ARA---P---EPGLPISGIGGI 261 (299)
T ss_pred HHh---c---CCCCcEEEECCC
Confidence 433 2 346777774443
No 76
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=64.92 E-value=11 Score=30.15 Aligned_cols=58 Identities=16% Similarity=0.361 Sum_probs=47.2
Q ss_pred EeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCC--CCHHHHHhhHHH-HHhcC
Q 042063 406 IWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASG--MTDEEMKDFIPR-IAKLG 465 (575)
Q Consensus 406 ~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G--~s~~~i~~F~~~-L~~~G 465 (575)
||++.+... +...+|++.+ +..|+..-+|..|..+|.-..- =|-+++..|+.+ |.++.
T Consensus 1 V~V~~~~~~-~~~~~~~~~l-~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~~l~~~~ 61 (74)
T PF01037_consen 1 VLVKVEPGH-DAYDEFAEAL-AEIPEVVECYSVTGEYDLILKVRARDMEELEEFIREKLRSIP 61 (74)
T ss_dssp EEEEESTTG-THHHHHHHHH-HTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTHHTST
T ss_pred CEEEEcCCC-chHHHHHHHH-HcCCCEEEEEEEeCCCCEEEEEEECCHHHHHHHHHHHhhcCC
Confidence 567777666 6788888888 7799999999999999985532 267899999999 88883
No 77
>PRK06801 hypothetical protein; Provisional
Probab=64.63 E-value=1.1e+02 Score=32.36 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=78.3
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-----cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHH
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-----HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFA 140 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-----gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~a 140 (575)
+.++|....+++-.+-.+|++|.-+++.+.+ .-+.|--.+-... .+ .+++.+...+..+.+
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~--------~~-----~~~~~~~~~~~~~a~- 71 (286)
T PRK06801 6 LANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHF--------KY-----ISLESLVEAVKFEAA- 71 (286)
T ss_pred HHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchh--------hc-----CCHHHHHHHHHHHHH-
Confidence 5677777777888899999999999765443 4566553321111 11 233444455554431
Q ss_pred hhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCc
Q 042063 141 QQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKV 220 (575)
Q Consensus 141 q~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~ 220 (575)
..+ +||.+=.|+|. . .+.+++.+++|+..|.|....
T Consensus 72 ------------------------~~~--vpV~lHlDH~~--~---~e~i~~Ai~~GftSVm~D~S~------------- 107 (286)
T PRK06801 72 ------------------------RHD--IPVVLNLDHGL--H---FEAVVRALRLGFSSVMFDGST------------- 107 (286)
T ss_pred ------------------------HCC--CCEEEECCCCC--C---HHHHHHHHHhCCcEEEEcCCC-------------
Confidence 123 99999999985 2 467888899999999993322
Q ss_pred ccCHHHHHHHHHHHHHhhhhcCC
Q 042063 221 LVAISEHINRLVAARLQFDVMGV 243 (575)
Q Consensus 221 Lvp~~E~v~RL~AAR~a~d~~g~ 243 (575)
.|.+|-+++-+.++.-+...|.
T Consensus 108 -l~~eeNi~~t~~v~~~a~~~gv 129 (286)
T PRK06801 108 -LEYEENVRQTREVVKMCHAVGV 129 (286)
T ss_pred -CCHHHHHHHHHHHHHHHHHcCC
Confidence 3778888887777765554554
No 78
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=64.58 E-value=18 Score=39.21 Aligned_cols=85 Identities=27% Similarity=0.292 Sum_probs=50.6
Q ss_pred CCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhh
Q 042063 76 NGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMS 154 (575)
Q Consensus 76 ~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~ 154 (575)
-+.|+++=|+.++-.|+...+ |.++|++|+.+== + -|.+.-|.+.+++.++.+
T Consensus 224 ~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr------~---~d~~~~~~~~L~~i~~~~----------------- 277 (356)
T PF01070_consen 224 WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGR------Q---LDWGPPTIDALPEIRAAV----------------- 277 (356)
T ss_dssp CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGT------S---STTS-BHHHHHHHHHHHH-----------------
T ss_pred cCCceEEEecccHHHHHHHHhcCCCEEEecCCCcc------c---CccccccccccHHHHhhh-----------------
Confidence 368999999999999987666 8999999985411 1 344444444444444322
Q ss_pred ccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEec
Q 042063 155 MSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 155 ~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
.-+ +|||+|+ |.-+=...+| .+..||.+|-|-
T Consensus 278 ----------~~~--~~i~~dg-----Gir~g~Dv~k-alaLGA~~v~ig 309 (356)
T PF01070_consen 278 ----------GDD--IPIIADG-----GIRRGLDVAK-ALALGADAVGIG 309 (356)
T ss_dssp ----------TTS--SEEEEES-----S--SHHHHHH-HHHTT-SEEEES
T ss_pred ----------cCC--eeEEEeC-----CCCCHHHHHH-HHHcCCCeEEEc
Confidence 123 8999994 3322233333 456888888764
No 79
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=63.46 E-value=39 Score=33.17 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.2
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccC
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQ 206 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ 206 (575)
+||.++.-.|+.....+.++++.+.++|+..|++-+-
T Consensus 124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 124 IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCC
Confidence 7999999888754447889999999999999999654
No 80
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=62.88 E-value=52 Score=36.69 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=22.3
Q ss_pred CCceeecCCCCHHHHHHHHc-cCCeEeec
Q 042063 77 GTASRTFGALDPVQVTMMAK-HLDSIYVS 104 (575)
Q Consensus 77 ~~~l~~~Ga~D~~sA~~~a~-gf~AIy~S 104 (575)
+-++++-++.++-.|+.+.+ |+++|-++
T Consensus 265 ~~~vi~G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 265 DLDIIAGNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred CCCEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 46777779999999987665 89999764
No 81
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=62.83 E-value=11 Score=34.64 Aligned_cols=59 Identities=31% Similarity=0.539 Sum_probs=45.8
Q ss_pred EeeccCCCCHHHHHhHHhhhh-hcCCCceeeecCCcc--cccccCCCCHHHHHhhHHHHHhcC
Q 042063 406 IWMETASPDLAECTKFAGGIK-SKHPEIMLAYNLSPS--FNWDASGMTDEEMKDFIPRIAKLG 465 (575)
Q Consensus 406 ~W~Et~~P~l~~a~~Fa~~i~-~~~P~~~laYN~SPS--FnW~~~G~s~~~i~~F~~~L~~~G 465 (575)
|.+|+..|+..++ .|...+- -+-|+.+..|.++|- ++--..|++.++|..|..+.++-+
T Consensus 10 I~v~~~~~~~~~~-~~L~~fae~~s~~~~~~yrlT~~Sl~~A~~~G~~~e~i~~~L~~~S~~~ 71 (129)
T PF13625_consen 10 ILVEPGHPSPADA-WFLARFAELKSPDTMHVYRLTPASLWRAASAGLTAEEIIEFLERYSKNP 71 (129)
T ss_pred EEEeCCCCCHHHH-HHHHHHhcccccCceEEEEECHHHHHHHHHcCCCHHHHHHHHHHHcCCC
Confidence 6789999988887 4444332 367899999999993 444568999999999988888665
No 82
>PRK15063 isocitrate lyase; Provisional
Probab=62.80 E-value=2.6 Score=46.72 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=44.8
Q ss_pred CCceEEEEeeccc---ccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC--ccc
Q 042063 242 GVETVLVARTDAE---AATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAG--LKT 316 (575)
Q Consensus 242 g~d~vIiARTDA~---~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~--l~t 316 (575)
+-+|+.--||.-- ..++++++|+ |+++|.. |||.|+. ++.-.+.+|+.+|++.+....| ++.
T Consensus 244 D~~fi~g~r~~eg~y~~~~Gld~AI~-Ra~AYa~-----------GAD~iw~-Et~~~d~ee~~~fa~~v~~~~P~~~la 310 (428)
T PRK15063 244 DRPFITGERTAEGFYRVKAGIEQAIA-RGLAYAP-----------YADLIWC-ETSTPDLEEARRFAEAIHAKFPGKLLA 310 (428)
T ss_pred ccccccCCCccccccccccCHHHHHH-HHHHHhc-----------CCCEEEe-CCCCCCHHHHHHHHHhhcccCccceee
Confidence 3556666666542 1357999999 9999984 5566654 3333688999999999987656 555
Q ss_pred cc
Q 042063 317 FS 318 (575)
Q Consensus 317 f~ 318 (575)
|+
T Consensus 311 yn 312 (428)
T PRK15063 311 YN 312 (428)
T ss_pred cC
Confidence 53
No 83
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=62.70 E-value=72 Score=34.44 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=38.6
Q ss_pred CHHHHHHhhCC--------ccccCCchHHHHHHHHHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeech
Q 042063 42 SARDVVALRGS--------LRQSYGSNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSG 105 (575)
Q Consensus 42 ta~~v~~~rgs--------~~~~y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG 105 (575)
..+.+.++-.. +.+.++-+.....+-+.+++.. ++.+++.-++-++-.|..+.+ |+++|-+++
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~-p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~ 169 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHL-PETFVIAGNVGTPEAVRELENAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhC-CCCeEEEEecCCHHHHHHHHHcCcCEEEECC
Confidence 34555555432 3455555555555555566543 234555556999999887766 899987773
No 84
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=62.08 E-value=72 Score=34.66 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeeccccc-CchHHHHHH
Q 042063 187 VKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAA-TLIQTNVDT 265 (575)
Q Consensus 187 ~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a-~~l~~aId~ 265 (575)
+-+++.+.++|+..|-+-|.+ +.---||-++ .-|+.++|+...++++... +.-+||+=---..- ...+++++
T Consensus 45 ~~sA~i~d~aGvD~ILVGDSl-gmv~lG~~~T-~~Vtld~mi~H~~aV~Rga----~~a~vVaDmPfgSY~~s~e~av~- 117 (332)
T PLN02424 45 YPSAVHVDSAGIDVCLVGDSA-AMVVHGHDTT-LPITLDEMLVHCRAVARGA----NRPLLVGDLPFGSYESSTDQAVE- 117 (332)
T ss_pred HHHHHHHHHcCCCEEEECCcH-HHHhcCCCCC-CCcCHHHHHHHHHHHhccC----CCCEEEeCCCCCCCCCCHHHHHH-
Confidence 345788999999999999998 4555666554 4589999999999998765 34466654433322 34666766
Q ss_pred HHHhh
Q 042063 266 RDHQF 270 (575)
Q Consensus 266 R~~aY 270 (575)
-+...
T Consensus 118 nA~rl 122 (332)
T PLN02424 118 SAVRM 122 (332)
T ss_pred HHHHH
Confidence 44444
No 85
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=61.73 E-value=45 Score=34.70 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.9
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEecc
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIED 205 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIED 205 (575)
++ +||++-.-. +..++.++++.++++||.||++-.
T Consensus 156 ~~--~pv~vKl~~---~~~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 156 VK--VPVIVKLTP---NVTDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred cC--CCEEEEcCC---CchhHHHHHHHHHHcCCCEEEEEc
Confidence 46 899998753 335778899999999999998744
No 86
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.51 E-value=31 Score=38.99 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhhC--CCceeecCCCCHHHHHHHHc-cCCeEee---chHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHH
Q 042063 64 KKLWRTLKTHQAN--GTASRTFGALDPVQVTMMAK-HLDSIYV---SGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHL 137 (575)
Q Consensus 64 ~kL~~lL~~~~~~--~~~l~~~Ga~D~~sA~~~a~-gf~AIy~---SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI 137 (575)
..+.+++++..+. +-+++.-|+-++-.|+.+.+ |+++|-+ +|..|.. -..+..|.||+ ..|..+
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt-~~~~~~~~p~~---------~av~~~ 322 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTT-RMMTGVGRPQF---------SAVLEC 322 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCccccc-ccccCCchhHH---------HHHHHH
Confidence 3444444443332 34555559999999887766 8888763 3333322 12234455542 233333
Q ss_pred HHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 138 FFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 138 ~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
.++ ...+.+|||||+ |..+-...+|.+. +||.++-+---.
T Consensus 323 ~~~------------------------~~~~~~~via~g-----gi~~~~~~~~al~-~ga~~v~~g~~~ 362 (479)
T PRK07807 323 AAA------------------------ARELGAHVWADG-----GVRHPRDVALALA-AGASNVMIGSWF 362 (479)
T ss_pred HHH------------------------HHhcCCcEEecC-----CCCCHHHHHHHHH-cCCCeeeccHhh
Confidence 321 011239999984 3333345555554 899999876543
No 87
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=60.34 E-value=39 Score=38.00 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeec
Q 042063 65 KLWRTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVS 104 (575)
Q Consensus 65 kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~S 104 (575)
.+.+.|++.+ .+-++++-++.++-+|+.+.+ |+++|-++
T Consensus 258 ~~i~~i~~~~-p~~~vi~g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 258 DRVREIKAKY-PDVQIIAGNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHhhC-CCCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence 3334444432 246788899999999987666 89998653
No 88
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=60.26 E-value=4.6 Score=41.21 Aligned_cols=66 Identities=29% Similarity=0.284 Sum_probs=51.0
Q ss_pred ceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 042063 171 PIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVAR 250 (575)
Q Consensus 171 PIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiAR 250 (575)
+=+||+-.||||.+ +++.-.|=+.=+=|+-|-||+. +=.-+||+|.|.+.+...-..+=+-|
T Consensus 62 vefaDIGCGyGGLl--v~Lsp~fPdtLiLGmEIR~KVs----------------dYVk~RI~ALR~~~a~~~~~ni~vlr 123 (249)
T KOG3115|consen 62 VEFADIGCGYGGLL--MKLAPKFPDTLILGMEIRDKVS----------------DYVKERIQALRRTSAEGQYPNISVLR 123 (249)
T ss_pred ceEEeeccCccchh--hhccccCccceeeeehhhHHHH----------------HHHHHHHHHHhccccccccccceeee
Confidence 45899999999985 7888889888899999999983 33445999999765533345566778
Q ss_pred eccc
Q 042063 251 TDAE 254 (575)
Q Consensus 251 TDA~ 254 (575)
|-+.
T Consensus 124 ~nam 127 (249)
T KOG3115|consen 124 TNAM 127 (249)
T ss_pred ccch
Confidence 8775
No 89
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=59.82 E-value=1.5e+02 Score=31.18 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=39.3
Q ss_pred HHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhh
Q 042063 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQF 238 (575)
Q Consensus 188 ~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~ 238 (575)
-.++.+.++|+.+|-.-|.+ +.---||-++ .-|+.+||+...++++.+.
T Consensus 26 ~sA~i~~~aG~d~ilvGdSl-gm~~lG~~~t-~~vtldem~~h~~aV~rg~ 74 (263)
T TIGR00222 26 SFAKLFADAGVDVILVGDSL-GMVVLGHDST-LPVTVADMIYHTAAVKRGA 74 (263)
T ss_pred HHHHHHHHcCCCEEEECccH-hHHhcCCCCC-CCcCHHHHHHHHHHHHhhC
Confidence 45788899999999999998 4555566554 4589999999999998764
No 90
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=59.65 E-value=39 Score=35.39 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=69.4
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+...+.++++.+++.|+.||-+= |..|--...+.+|..+=++.++.+.+ | .+-|++=+= +....+
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~---------GstGE~~~Ls~~Er~~l~~~~~~~~~--g-~~pvi~gv~---~~~t~~ 83 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVG---------GTSGEPGSLTLEERKQAIENAIDQIA--G-RIPFAPGTG---ALNHDE 83 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC---------ccCcccccCCHHHHHHHHHHHHHHhC--C-CCcEEEECC---cchHHH
Confidence 56788999999999999999863 44445577899999988888876543 2 343444332 234677
Q ss_pred HHHHHHHhhh-hccCCCCCCcchHHHHHHHHHH--CCCCHHHHHHHHHHHHh---cCCcccccH
Q 042063 262 NVDTRDHQFI-LGVTNPNLRGKALASILAEAMA--AGKTGAELQAIEDNWIA---MAGLKTFSE 319 (575)
Q Consensus 262 aId~R~~aYi-~Gat~~~~~~~a~ad~i~~~~s--~g~s~~ei~~~~~~W~~---~~~l~tf~e 319 (575)
+|+ ..+... .|+ |+++...- -..+.+++.++-+.-.+ ..||+.|+-
T Consensus 84 ai~-~a~~A~~~Ga-----------d~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 84 TLE-LTKFAEEAGA-----------DAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred HHH-HHHHHHHcCC-----------CEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 787 666554 454 33222110 11345666665555544 477887763
No 91
>PLN02979 glycolate oxidase
Probab=59.12 E-value=36 Score=37.33 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=27.4
Q ss_pred CCCceeecCCCCHHHHHHHHc-cCCeEeechHH
Q 042063 76 NGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQ 107 (575)
Q Consensus 76 ~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~ 107 (575)
-+-|+++=|+.++-.|....+ |.++|.+|+.+
T Consensus 222 ~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhG 254 (366)
T PLN02979 222 TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHG 254 (366)
T ss_pred cCCCEEeecCCCHHHHHHHHhcCCCEEEECCCC
Confidence 367999999999999887665 89999999965
No 92
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=57.86 E-value=46 Score=37.69 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=52.3
Q ss_pred CCceeecCCCCHHHHHHHHc-cCCeEeec---hHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHH
Q 042063 77 GTASRTFGALDPVQVTMMAK-HLDSIYVS---GWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREAR 152 (575)
Q Consensus 77 ~~~l~~~Ga~D~~sA~~~a~-gf~AIy~S---G~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r 152 (575)
+-++.+-++.++-.|+.+.+ |.++|.++ |.-|.. --.++.|.|+. +.+.+. .++.+
T Consensus 282 ~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t-~~~~~~g~p~~-----~ai~~~-~~~~~------------- 341 (495)
T PTZ00314 282 HVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICIT-QEVCAVGRPQA-----SAVYHV-ARYAR------------- 341 (495)
T ss_pred CceEEECCcCCHHHHHHHHHcCCCEEEECCcCCccccc-chhccCCCChH-----HHHHHH-HHHHh-------------
Confidence 45667778998888887665 89999874 212211 00123455542 112222 22211
Q ss_pred hhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCc
Q 042063 153 MSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSV 209 (575)
Q Consensus 153 ~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~ 209 (575)
..+ +|||+|+ |..+-...+|.+ .+||.+|-+---..+
T Consensus 342 ------------~~~--v~vIadG-----Gi~~~~di~kAl-a~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 342 ------------ERG--VPCIADG-----GIKNSGDICKAL-ALGADCVMLGSLLAG 378 (495)
T ss_pred ------------hcC--CeEEecC-----CCCCHHHHHHHH-HcCCCEEEECchhcc
Confidence 133 9999985 333334555555 499999998765433
No 93
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=57.08 E-value=30 Score=36.02 Aligned_cols=148 Identities=12% Similarity=-0.014 Sum_probs=89.9
Q ss_pred CCceeecCCCCHHHHHHHHccCCeEeechHHHhhc-----cCCCCCCCCCC---C-CCCcCcHHHHHHHHHHH-----hh
Q 042063 77 GTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST-----HTSTNEPGPDL---A-DYPYDTVPNKVEHLFFA-----QQ 142 (575)
Q Consensus 77 ~~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~-----~~~~~~g~PD~---~-~~p~~tv~~~v~rI~~a-----q~ 142 (575)
-+..++-.++|+-++..++++.+.+.+.+..+-.. ++ ..+.|=. + ..+++++...++.|... -+
T Consensus 78 ~Gl~~~Tev~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va--~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L 155 (250)
T PRK13397 78 FGLLSVSEIMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLS--HIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIIL 155 (250)
T ss_pred cCCCEEEeeCCHHHHHHHHhcCCEEEECcccccCHHHHHHHH--ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 35556668888888877767788888888665331 11 2233321 3 56677888888877531 11
Q ss_pred hh-------HHH--HHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCccccc
Q 042063 143 YH-------DRK--QREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKC 213 (575)
Q Consensus 143 ~h-------Dr~--q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkC 213 (575)
+| ..- ..+.+ .++ ..+ .. +.+|||+|.-+.-|...-|..+.+.-+.+||.|+.||=.. .|.+-
T Consensus 156 ~eRg~~~Y~~~~~n~~dl~-ai~-~lk---~~--~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~-~P~~A 227 (250)
T PRK13397 156 CERGVRGYDVETRNMLDIM-AVP-IIQ---QK--TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP-DPDHA 227 (250)
T ss_pred EccccCCCCCccccccCHH-HHH-HHH---HH--hCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC-Ccccc
Confidence 11 000 00000 000 000 01 2389999998765666777888999999999999999664 34443
Q ss_pred CCCCCCcccCHHHHHHHHHHHH
Q 042063 214 GHMAGKVLVAISEHINRLVAAR 235 (575)
Q Consensus 214 GH~~Gk~Lvp~~E~v~RL~AAR 235 (575)
-.+|..-++.+++-+-|+..|
T Consensus 228 -~sD~~q~l~~~~l~~l~~~~~ 248 (250)
T PRK13397 228 -LSDAAQQIDYKQLEQLGQELW 248 (250)
T ss_pred -cCchhhhCCHHHHHHHHHHhc
Confidence 236777788887776665543
No 94
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=56.68 E-value=57 Score=38.73 Aligned_cols=54 Identities=15% Similarity=0.317 Sum_probs=44.5
Q ss_pred HHhHHhhhhhcCC-CceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecch
Q 042063 418 CTKFAGGIKSKHP-EIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLA 474 (575)
Q Consensus 418 a~~Fa~~i~~~~P-~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLa 474 (575)
..+-.++|++..| +..+.+.+|| ..|...|++.++...|.+.|.+.|. .+|++.
T Consensus 604 ~~eiv~~ir~~~~~~~~v~~ri~~-~~~~~~g~~~~~~~~~~~~l~~~g~--d~i~vs 658 (765)
T PRK08255 604 PLEVFRAVRAVWPAEKPMSVRISA-HDWVEGGNTPDDAVEIARAFKAAGA--DLIDVS 658 (765)
T ss_pred HHHHHHHHHHhcCCCCeeEEEEcc-ccccCCCCCHHHHHHHHHHHHhcCC--cEEEeC
Confidence 3467788999885 5689999998 6788889999999999999999995 666654
No 95
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=55.99 E-value=62 Score=33.56 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=27.5
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEecc
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIED 205 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIED 205 (575)
+||++-.-. +..++.++++.++++|+.+|++-.
T Consensus 158 ~pv~vKi~~---~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 158 VPVFAKLSP---NVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred CCEEEECCC---ChhhHHHHHHHHHHcCCCEEEEEc
Confidence 899999853 345678999999999999999853
No 96
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=55.94 E-value=68 Score=32.29 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=71.8
Q ss_pred HHHHHHHHhhccCCCCCCCCCCC---------HHHHHH--hhCC-c-cccCCchHHHHHHHHHHHhhhhCCCceeecCCC
Q 042063 20 AEVAEVQAWWNSERFRLTRRPYS---------ARDVVA--LRGS-L-RQSYGSNEMAKKLWRTLKTHQANGTASRTFGAL 86 (575)
Q Consensus 20 ~~~~~i~~ww~~~R~~~i~R~Yt---------a~~v~~--~rgs-~-~~~y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~ 86 (575)
++|++|++==+-|=---+||.|. .++|.. .-|. + -++-+....-..|.+++++.++.. .+++.-+.
T Consensus 22 ~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~-~l~MADis 100 (192)
T PF04131_consen 22 EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY-QLVMADIS 100 (192)
T ss_dssp HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT-SEEEEE-S
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC-cEEeeecC
Confidence 45566666555555555666653 233332 2232 1 122222111177888888887777 77888888
Q ss_pred CHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCC
Q 042063 87 DPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPC 165 (575)
Q Consensus 87 D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~ 165 (575)
+--.++..++ ||+.|.++=.+.-. .+.. ..|| .+.++++.+
T Consensus 101 t~ee~~~A~~~G~D~I~TTLsGYT~--~t~~-~~pD---------~~lv~~l~~-------------------------- 142 (192)
T PF04131_consen 101 TLEEAINAAELGFDIIGTTLSGYTP--YTKG-DGPD---------FELVRELVQ-------------------------- 142 (192)
T ss_dssp SHHHHHHHHHTT-SEEE-TTTTSST--TSTT-SSHH---------HHHHHHHHH--------------------------
T ss_pred CHHHHHHHHHcCCCEEEcccccCCC--CCCC-CCCC---------HHHHHHHHh--------------------------
Confidence 8888887666 89999876322211 1111 2333 345666642
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEe
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHI 203 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhI 203 (575)
.+ +|||+.+ +|-.| +.+++..++||-+|.+
T Consensus 143 ~~--~pvIaEG--ri~tp----e~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 143 AD--VPVIAEG--RIHTP----EQAAKALELGAHAVVV 172 (192)
T ss_dssp TT--SEEEEES--S--SH----HHHHHHHHTT-SEEEE
T ss_pred CC--CcEeecC--CCCCH----HHHHHHHhcCCeEEEE
Confidence 24 8999863 44444 6678889999999876
No 97
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=55.37 E-value=2.4e+02 Score=29.90 Aligned_cols=120 Identities=19% Similarity=0.081 Sum_probs=77.7
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-----cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHH
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-----HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFA 140 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-----gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~a 140 (575)
+.++|+...+++-.+-.+|+++..+++.+.+ +-+.|-..+-... ...+++.+...++.+.+
T Consensus 6 ~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~-------------~~~g~~~~~~~~~~~A~- 71 (283)
T PRK07998 6 GRILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNA-------------QLSGYDYIYEIVKRHAD- 71 (283)
T ss_pred HHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHH-------------hhCCHHHHHHHHHHHHH-
Confidence 5677777777888899999999998765433 3455543221111 11233334444444431
Q ss_pred hhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCc
Q 042063 141 QQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKV 220 (575)
Q Consensus 141 q~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~ 220 (575)
..+ +||.+=.|.|. ..+.+++.+++|...|-| |-. |
T Consensus 72 ------------------------~~~--vPV~lHLDH~~-----~~e~i~~Ai~~GftSVM~-DgS-------~----- 107 (283)
T PRK07998 72 ------------------------KMD--VPVSLHLDHGK-----TFEDVKQAVRAGFTSVMI-DGA-------A----- 107 (283)
T ss_pred ------------------------HCC--CCEEEECcCCC-----CHHHHHHHHHcCCCEEEE-eCC-------C-----
Confidence 124 89999999884 246677788999999999 543 1
Q ss_pred ccCHHHHHHHHHHHHHhhhhcCCc
Q 042063 221 LVAISEHINRLVAARLQFDVMGVE 244 (575)
Q Consensus 221 Lvp~~E~v~RL~AAR~a~d~~g~d 244 (575)
.|.+|=+++-+.+..-+...|..
T Consensus 108 -l~~eeNi~~T~~vve~Ah~~gv~ 130 (283)
T PRK07998 108 -LPFEENIAFTKEAVDFAKSYGVP 130 (283)
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCE
Confidence 48899998888877655555643
No 98
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=54.18 E-value=2.6e+02 Score=29.68 Aligned_cols=122 Identities=12% Similarity=0.133 Sum_probs=78.6
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-----cCCeEeech-HHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHH
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-----HLDSIYVSG-WQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFF 139 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-----gf~AIy~SG-~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~ 139 (575)
++++|....+++-.+-.+|++|.-+++.+.+ .-+.|--.+ +.+.. .+ +++.+...++.+.+
T Consensus 6 ~~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~------~~-------~~~~~~~~~~~~a~ 72 (293)
T PRK07315 6 AEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKY------MG-------GYKVCKNLIENLVE 72 (293)
T ss_pred HHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhh------cC-------cHHHHHHHHHHHHH
Confidence 5677777777788899999999998765433 456665322 11110 01 12233444444321
Q ss_pred HhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCC
Q 042063 140 AQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGK 219 (575)
Q Consensus 140 aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk 219 (575)
+ -.++ +||.+=.|+| + .+.+++.+++|+.-|.|....
T Consensus 73 ------------~-----------~~~~--vPV~lHLDH~--~----~~~i~~ai~~GftSVm~d~S~------------ 109 (293)
T PRK07315 73 ------------S-----------MGIT--VPVAIHLDHG--H----YEDALECIEVGYTSIMFDGSH------------ 109 (293)
T ss_pred ------------H-----------cCCC--CcEEEECCCC--C----HHHHHHHHHcCCCEEEEcCCC------------
Confidence 0 0124 8999999988 4 457788899999999997664
Q ss_pred cccCHHHHHHHHHHHHHhhhhcCCce
Q 042063 220 VLVAISEHINRLVAARLQFDVMGVET 245 (575)
Q Consensus 220 ~Lvp~~E~v~RL~AAR~a~d~~g~d~ 245 (575)
.|.+|-++.-+.++.-+...|..+
T Consensus 110 --l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 110 --LPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred --CCHHHHHHHHHHHHHHHHHcCCEE
Confidence 367888888877776555556544
No 99
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=53.90 E-value=47 Score=35.06 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHH
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQT 261 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~ 261 (575)
+.....++++.+++.|+.||-+ ||..|--...+.+|..+=++.++.+.+ | -.=|||=|= +....+
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~---------~GttGE~~~Ls~eEr~~v~~~~v~~~~--g-rvpviaG~g---~~~t~e 87 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVV---------LGTTGESPTLTLEERKEVLEAVVEAVG--G-RVPVIAGVG---SNSTAE 87 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE---------CCCCccchhcCHHHHHHHHHHHHHHHC--C-CCcEEEecC---CCcHHH
Confidence 6778999999999999999976 555555677889999988888887664 2 222555443 345778
Q ss_pred HHHHHHHhhh-hcc
Q 042063 262 NVDTRDHQFI-LGV 274 (575)
Q Consensus 262 aId~R~~aYi-~Ga 274 (575)
+|+ .++.+. .|+
T Consensus 88 ai~-lak~a~~~Ga 100 (299)
T COG0329 88 AIE-LAKHAEKLGA 100 (299)
T ss_pred HHH-HHHHHHhcCC
Confidence 888 666554 554
No 100
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=53.20 E-value=75 Score=33.17 Aligned_cols=84 Identities=20% Similarity=0.189 Sum_probs=53.1
Q ss_pred CCceeecC-CCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhh
Q 042063 77 GTASRTFG-ALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMS 154 (575)
Q Consensus 77 ~~~l~~~G-a~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~ 154 (575)
.++.++|= --||+-|+.+.+ |..+|.==|.-|.+ +.|. ..+..++-|..
T Consensus 129 eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGS-----g~G~---------~n~~~l~iiie--------------- 179 (262)
T COG2022 129 EGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGS-----GLGL---------QNPYNLEIIIE--------------- 179 (262)
T ss_pred CCCEEeeccCCCHHHHHHHHhcCceEeccccccccC-----CcCc---------CCHHHHHHHHH---------------
Confidence 45677764 457888888776 78887755544443 3333 12334444431
Q ss_pred ccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 155 MSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 155 ~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
..+ +|||+|+ |-|.+.++.. -.|.|+.||-+.--+
T Consensus 180 ----------~a~--VPviVDA--GiG~pSdAa~----aMElG~DaVL~NTAi 214 (262)
T COG2022 180 ----------EAD--VPVIVDA--GIGTPSDAAQ----AMELGADAVLLNTAI 214 (262)
T ss_pred ----------hCC--CCEEEeC--CCCChhHHHH----HHhcccceeehhhHh
Confidence 135 9999986 7777765543 457899999886655
No 101
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=52.79 E-value=3.2e+02 Score=29.93 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=84.0
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-----cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHH
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-----HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFA 140 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-----gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~a 140 (575)
++++|....+++-.+-++|++|.-+++.+.+ ..+.|-..+-.... + .++..+...++.+.+
T Consensus 6 ~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~--------~-----~g~~~~~~~v~~~ae- 71 (347)
T PRK13399 6 LRQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARK--------Y-----AGDAMLRHMVLAAAE- 71 (347)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhh--------h-----CCHHHHHHHHHHHHH-
Confidence 5677877777888899999999999765433 46666533311110 1 223334444443321
Q ss_pred hhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCC-CCC
Q 042063 141 QQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHM-AGK 219 (575)
Q Consensus 141 q~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~-~Gk 219 (575)
...+ +||..=.|+|.- ++.+++.+++|-..|-|.=. |+ .||
T Consensus 72 -----------------------~~~~--VPVaLHLDHg~~-----~e~i~~Ai~~GFtSVMiDgS--------~l~~~~ 113 (347)
T PRK13399 72 -----------------------MYPD--IPICLHQDHGNS-----PATCQSAIRSGFTSVMMDGS--------LLADGK 113 (347)
T ss_pred -----------------------hcCC--CcEEEECCCCCC-----HHHHHHHHhcCCCEEEEeCC--------CCCCCC
Confidence 1223 899999999963 56789999999999998633 34 377
Q ss_pred cccCHHHHHHHHHHHHHhhhhcCC
Q 042063 220 VLVAISEHINRLVAARLQFDVMGV 243 (575)
Q Consensus 220 ~Lvp~~E~v~RL~AAR~a~d~~g~ 243 (575)
+-.|.+|=+++-+.+..-+...|.
T Consensus 114 ~~~~~eeNI~~Trevve~Ah~~Gv 137 (347)
T PRK13399 114 TPASYDYNVDVTRRVTEMAHAVGV 137 (347)
T ss_pred CccCHHHHHHHHHHHHHHHHHcCC
Confidence 788999999888877765555554
No 102
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=52.73 E-value=87 Score=34.33 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
++ +||++=.=- +..++..+++.++++||.||.+-+..
T Consensus 167 ~~--~Pv~vKl~p---~~~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (420)
T PRK08318 167 SR--LPVIVKLTP---NITDIREPARAAKRGGADAVSLINTI 203 (420)
T ss_pred cC--CcEEEEcCC---CcccHHHHHHHHHHCCCCEEEEeccc
Confidence 55 999998853 34567889999999999999964443
No 103
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=52.48 E-value=3e+02 Score=29.04 Aligned_cols=120 Identities=14% Similarity=0.087 Sum_probs=77.4
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-----cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHH
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-----HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFA 140 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-----gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~a 140 (575)
+.++|+...+++-.+-.+|++|.-+++.+.+ +-+.|--.+ -. ...+ .+++.+...+....+
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~----~~----~~~~-----~~~~~~~~~~~~~a~- 71 (281)
T PRK06806 6 MKELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIA----EV----RLNH-----SPLHLIGPLMVAAAK- 71 (281)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcC----cc----hhcc-----CChHHHHHHHHHHHH-
Confidence 5677877777888999999999998765433 355554222 10 0011 222222233332211
Q ss_pred hhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCc
Q 042063 141 QQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKV 220 (575)
Q Consensus 141 q~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~ 220 (575)
..+ +||.+=.|+|. + .+.++..+++|+.-|.|.++.
T Consensus 72 ------------------------~~~--vpv~lHlDH~~-~----~e~i~~Al~~G~tsVm~d~s~------------- 107 (281)
T PRK06806 72 ------------------------QAK--VPVAVHFDHGM-T----FEKIKEALEIGFTSVMFDGSH------------- 107 (281)
T ss_pred ------------------------HCC--CCEEEECCCCC-C----HHHHHHHHHcCCCEEEEcCCC-------------
Confidence 123 89999999984 2 468888999999999998875
Q ss_pred ccCHHHHHHHHHHHHHhhhhcCCc
Q 042063 221 LVAISEHINRLVAARLQFDVMGVE 244 (575)
Q Consensus 221 Lvp~~E~v~RL~AAR~a~d~~g~d 244 (575)
.|.+|.++.-+..+.-+...|..
T Consensus 108 -~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 108 -LPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCe
Confidence 26688887777777655555654
No 104
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=52.20 E-value=17 Score=38.30 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=45.8
Q ss_pred Hhhhc-CCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCC--CCHHHHHhhHHHHHhc
Q 042063 395 RGWAF-APHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASG--MTDEEMKDFIPRIAKL 464 (575)
Q Consensus 395 R~~a~-apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G--~s~~~i~~F~~~L~~~ 464 (575)
++.++ .+.+|++++|| -|++.+++.-.+.+++..|++.+...++ .+..| .+.+.++.++..|.+.
T Consensus 145 q~~~l~~~gvD~i~~ET-~~~~~E~~~~~~~~~~~~~~~pv~is~~----~~~~g~l~~G~~~~~~~~~l~~~ 212 (304)
T PRK09485 145 RIEALAEAGADLLACET-IPNLDEAEALVELLKEEFPGVPAWLSFT----LRDGTHISDGTPLAEAAALLAAS 212 (304)
T ss_pred HHHHHhhCCCCEEEEec-cCCHHHHHHHHHHHHHhcCCCcEEEEEE----eCCCCcCCCCCCHHHHHHHHhcC
Confidence 34444 67799999999 8999999999999998888765544332 33433 3345577777777544
No 105
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=52.19 E-value=2.7e+02 Score=29.31 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=79.2
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-----cCCeEeechHHHhhccCCCCCCCCCCCCCC-cCcHHHHHHHHHH
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-----HLDSIYVSGWQCSSTHTSTNEPGPDLADYP-YDTVPNKVEHLFF 139 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-----gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p-~~tv~~~v~rI~~ 139 (575)
+.++|+...+++-.+-.+|++|--+++.+.+ ..+.|-.-+-... .+ ++ +..+...+..+.+
T Consensus 4 ~~~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~--------~~-----~~~~~~~~~~~~~~a~ 70 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAI--------KY-----MGGYKMAVAMVKTLIE 70 (282)
T ss_pred HHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchh--------hc-----cCcHHHHHHHHHHHHH
Confidence 5677777777788899999999988665432 4677763221110 01 11 3344555555432
Q ss_pred HhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCC
Q 042063 140 AQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGK 219 (575)
Q Consensus 140 aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk 219 (575)
..+. +||..-.|.|. . .+.++..+++|+.-|+|....
T Consensus 71 -------------------------~~~~-vpv~lhlDH~~-~----~e~i~~ai~~Gf~sVmid~s~------------ 107 (282)
T TIGR01859 71 -------------------------RMSI-VPVALHLDHGS-S----YESCIKAIKAGFSSVMIDGSH------------ 107 (282)
T ss_pred -------------------------HCCC-CeEEEECCCCC-C----HHHHHHHHHcCCCEEEECCCC------------
Confidence 1111 89999999984 2 467888899999999997764
Q ss_pred cccCHHHHHHHHHHHHHhhhhcCC
Q 042063 220 VLVAISEHINRLVAARLQFDVMGV 243 (575)
Q Consensus 220 ~Lvp~~E~v~RL~AAR~a~d~~g~ 243 (575)
.|.+|-+++-+..+.-+...|.
T Consensus 108 --l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 108 --LPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred --CCHHHHHHHHHHHHHHHHHcCC
Confidence 2778888888777765555564
No 106
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=51.86 E-value=9 Score=40.03 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=69.4
Q ss_pred CceeecCCCCHHHHHHHHccCCeEeechHHHhhc-----cCCCCCCCC----CCCCCCcCcHHHHHHHHHHHhhhhHHHH
Q 042063 78 TASRTFGALDPVQVTMMAKHLDSIYVSGWQCSST-----HTSTNEPGP----DLADYPYDTVPNKVEHLFFAQQYHDRKQ 148 (575)
Q Consensus 78 ~~l~~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~-----~~~~~~g~P----D~~~~p~~tv~~~v~rI~~aq~~hDr~q 148 (575)
+.-++-.++|+.++..+++..+.+++.+..+-+. ++ ..+.| -......+++...++.+...- . ..+
T Consensus 88 glpv~tEv~~~~~~~~~~d~vd~lqIgAr~~~n~~ll~~as--~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G-~--n~~ 162 (270)
T PF00793_consen 88 GLPVATEVLDPEQAEYVADLVDWLQIGARLMENQDLLEAAS--GTGKPVGFKNGTFAAIDEWLAAAEKHLFLG-I--NSG 162 (270)
T ss_dssp T-EEEEEESSGGGHHHHHTTESEEEE-GGGTTCHHHHHHHH--CTSSEEEEEE-TTSHGGGHHHHHHHHHHTT-E--CSS
T ss_pred CCeeeEEecCcccHHHHHhcCcEEEECcchhcCHHHHHHhc--cCCCeEEeccCCccCHHHHHHHHhhhhhhc-C--CCC
Confidence 4445558889988876666778888877665331 11 12222 112245667777777664210 0 000
Q ss_pred HH--HH------------hhcc--HhhhhcCCCCCCCCceeeeCCCCCCCch-----HHHHHHHHHHHcCceEEEeccCC
Q 042063 149 RE--AR------------MSMS--REERARTPCVDYLKPIIADGDTGFGGTT-----ATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 149 ~~--~r------------~~~~--~e~~~~~~~vd~~lPIIAD~DtGfGg~~-----nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
.. +| ..+. ...+. ... +|||+|.=.+-|... -|..+++.-+.+|+.|+-||=-.
T Consensus 163 ~~l~erglr~g~~~n~~~~di~~~~~~~~---~~~--lpVivD~SH~~~~~~~~~q~~V~~~a~aaia~GidGlmiEsH~ 237 (270)
T PF00793_consen 163 NILCERGLRGGYGPNYNVLDIAAVPIMKK---KTH--LPVIVDPSHANSRKDGGRQELVPPLARAAIAAGIDGLMIESHP 237 (270)
T ss_dssp EEEEEEEEEESSSSSSEEHHTTHHHHHHH---HTS--SEEEEEHHHHTTTCGGGGHCGHHHHHHHHHHHTESEEEEEEES
T ss_pred CeeeeeeeeccccccccchhHHHHHHHHH---hcC--CCEEECchhhhccccCCchhhHHHHHHHHHhhcCCEEEEeecC
Confidence 00 00 0000 00000 122 799999988877776 89999999999999999999654
No 107
>PRK08185 hypothetical protein; Provisional
Probab=51.79 E-value=2.4e+02 Score=29.86 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=79.4
Q ss_pred HHHHHhhhhCCCceeecCCCCHHHHHHHHc-----cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHh
Q 042063 67 WRTLKTHQANGTASRTFGALDPVQVTMMAK-----HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQ 141 (575)
Q Consensus 67 ~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-----gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq 141 (575)
.++|....+++-.+-.+|++|--+++.+.+ +-+.|-..+-.... + .+. ++...++.+.+
T Consensus 2 ~~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~--------~-----~~~-~~~~~~~~~a~-- 65 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELD--------F-----LGD-NFFAYVRERAK-- 65 (283)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhh--------h-----ccH-HHHHHHHHHHH--
Confidence 467777777888899999999999765433 46666533322111 1 111 14444444431
Q ss_pred hhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcc
Q 042063 142 QYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVL 221 (575)
Q Consensus 142 ~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~L 221 (575)
..+ +||.+=.|+|.- .+.++..+++|...|.|....
T Consensus 66 -----------------------~~~--vPV~lHLDHg~~-----~e~i~~ai~~Gf~SVM~D~S~-------------- 101 (283)
T PRK08185 66 -----------------------RSP--VPFVIHLDHGAT-----IEDVMRAIRCGFTSVMIDGSL-------------- 101 (283)
T ss_pred -----------------------HCC--CCEEEECCCCCC-----HHHHHHHHHcCCCEEEEeCCC--------------
Confidence 123 999999999952 566788899999998887654
Q ss_pred cCHHHHHHHHHHHHHhhhhcCCce
Q 042063 222 VAISEHINRLVAARLQFDVMGVET 245 (575)
Q Consensus 222 vp~~E~v~RL~AAR~a~d~~g~d~ 245 (575)
.|.+|-+++-+.++.-+...|..+
T Consensus 102 l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 102 LPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeE
Confidence 378999988888876666566654
No 108
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=51.13 E-value=1.1e+02 Score=33.35 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=24.7
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
+|||+| +|-|.+.++ +...|.|+.||-+-=-.
T Consensus 250 vpVivd--AGIg~~sda----~~AmelGadgVL~nSaI 281 (326)
T PRK11840 250 VPVLVD--AGVGTASDA----AVAMELGCDGVLMNTAI 281 (326)
T ss_pred CcEEEe--CCCCCHHHH----HHHHHcCCCEEEEccee
Confidence 999998 577777654 45678999999876554
No 109
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=50.55 E-value=1.2e+02 Score=32.54 Aligned_cols=207 Identities=13% Similarity=0.088 Sum_probs=107.5
Q ss_pred HHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHHH
Q 042063 186 TVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDT 265 (575)
Q Consensus 186 v~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId~ 265 (575)
....-+...+-|+.-|..|.-...++--++ .+..-+..++++..++..-.+...-| ..|++--=.. +....
T Consensus 39 ~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~-~~~~~~~~d~~i~~~r~l~d~vh~~G--~~i~~QL~H~--G~~~~---- 109 (337)
T PRK13523 39 HLIHYGTRAAGQVGLVIVEATAVLPEGRIS-DKDLGIWDDEHIEGLHKLVTFIHDHG--AKAAIQLAHA--GRKAE---- 109 (337)
T ss_pred HHHHHHHHHcCCCeEEEECCeEECccccCC-CCceecCCHHHHHHHHHHHHHHHhcC--CEEEEEccCC--CCCCC----
Confidence 444456677788888888876543331111 22333445778877777655544334 3333321110 10000
Q ss_pred HHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhHH---HHHHH
Q 042063 266 RDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRR---RLNEW 342 (575)
Q Consensus 266 R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~---~~~~~ 342 (575)
+.... .+.+..... ... -..+..|.+||.++.+.|. ++.....+.|++.+.+.-. .+.+|
T Consensus 110 ~~~~~-~~ps~~~~~--~~~-----~~p~~mt~eeI~~ii~~f~---------~aA~~a~~aGfDgVeih~ahGyLl~qF 172 (337)
T PRK13523 110 LEGDI-VAPSAIPFD--EKS-----KTPVEMTKEQIKETVLAFK---------QAAVRAKEAGFDVIEIHGAHGYLINEF 172 (337)
T ss_pred CCCCc-cCCCCCCCC--CCC-----CCCCcCCHHHHHHHHHHHH---------HHHHHHHHcCCCEEEEccccchHHHHh
Confidence 00000 011110000 000 0123578899999988865 5555555556644444322 34445
Q ss_pred HhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHH
Q 042063 343 MNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFA 422 (575)
Q Consensus 343 ~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa 422 (575)
++-+. -.||-| | -|.++- |. .-+.+-.
T Consensus 173 lSp~~---------------------------N~RtD~--y--GGslen---R~-------------------Rf~~eii 199 (337)
T PRK13523 173 LSPLS---------------------------NKRTDE--Y--GGSPEN---RY-------------------RFLREII 199 (337)
T ss_pred cCCcc---------------------------CCcCCC--C--CCCHHH---HH-------------------HHHHHHH
Confidence 44221 034443 2 233331 11 1223555
Q ss_pred hhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchh
Q 042063 423 GGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAG 475 (575)
Q Consensus 423 ~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG 475 (575)
++||+.. +..+.+.+||. .+...|++.++...+...|.+.|+ .+|++.+
T Consensus 200 ~~ir~~~-~~~v~vRis~~-d~~~~G~~~~e~~~i~~~l~~~gv--D~i~vs~ 248 (337)
T PRK13523 200 DAVKEVW-DGPLFVRISAS-DYHPGGLTVQDYVQYAKWMKEQGV--DLIDVSS 248 (337)
T ss_pred HHHHHhc-CCCeEEEeccc-ccCCCCCCHHHHHHHHHHHHHcCC--CEEEeCC
Confidence 6677665 34678888883 456679999999999999999995 5665544
No 110
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=50.36 E-value=1.3e+02 Score=33.02 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhH---HHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCcc
Q 042063 294 AGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKR---RRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLF 370 (575)
Q Consensus 294 ~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~ 370 (575)
+-.|.+||.++.++ |-+|..++.++|++.+.+.- =++++|++-..
T Consensus 137 r~mt~~eI~~ii~~---------f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~t----------------------- 184 (363)
T COG1902 137 RELTEEEIEEVIED---------FARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLT----------------------- 184 (363)
T ss_pred ccCCHHHHHHHHHH---------HHHHHHHHHHcCCCEEEEeeccchHHHHhcCCcc-----------------------
Confidence 34788999999888 44778888877875544432 23455555221
Q ss_pred ccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCce-eeecCCccccc-ccCC
Q 042063 371 WDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIM-LAYNLSPSFNW-DASG 448 (575)
Q Consensus 371 ~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~-laYN~SPSFnW-~~~G 448 (575)
--||- .|-|.+| +|+ .-+.+-.++|+++.+.-. +.|.+||. .| ...|
T Consensus 185 ----N~RtD----~YGGSlE---NR~-------------------Rf~~EVv~aVr~~vg~~~~vg~Rls~~-d~~~~~g 233 (363)
T COG1902 185 ----NKRTD----EYGGSLE---NRA-------------------RFLLEVVDAVREAVGADFPVGVRLSPD-DFFDGGG 233 (363)
T ss_pred ----CCCCC----ccCCcHH---HHH-------------------HHHHHHHHHHHHHhCCCceEEEEECcc-ccCCCCC
Confidence 13333 2444444 222 123466678888887765 99999993 33 3348
Q ss_pred CCHHHHHhhHHHHHhcCc-eeeeecchhhh
Q 042063 449 MTDEEMKDFIPRIAKLGF-CWQFITLAGFH 477 (575)
Q Consensus 449 ~s~~~i~~F~~~L~~~G~-~~Q~ItLaG~H 477 (575)
.+.++...+.+.|.+.|. -+-=++-.+.+
T Consensus 234 ~~~~e~~~la~~L~~~G~~d~i~vs~~~~~ 263 (363)
T COG1902 234 LTIEEAVELAKALEEAGLVDYIHVSEGGYE 263 (363)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEeeccccc
Confidence 999999999999999995 44444444444
No 111
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=50.18 E-value=84 Score=33.61 Aligned_cols=33 Identities=24% Similarity=0.646 Sum_probs=27.0
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEec
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
++ +||++= ..|+|. ..+.++.+.++||.+|++-
T Consensus 178 ~~--vPVivK-~~g~g~---~~~~a~~L~~aGvd~I~Vs 210 (333)
T TIGR02151 178 LS--VPVIVK-EVGFGI---SKEVAKLLADAGVSAIDVA 210 (333)
T ss_pred cC--CCEEEE-ecCCCC---CHHHHHHHHHcCCCEEEEC
Confidence 45 999987 467773 3688999999999999993
No 112
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=50.04 E-value=99 Score=33.81 Aligned_cols=100 Identities=17% Similarity=0.093 Sum_probs=57.2
Q ss_pred HHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEee---chHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhh
Q 042063 68 RTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYV---SGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQY 143 (575)
Q Consensus 68 ~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~---SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~ 143 (575)
+.+++.+ ++.+++.-|+-++-.+..+.. |.++|=+ +|..|..- -.+.-|+|- +..|....++
T Consensus 143 k~ik~~~-P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr-~vtGvG~PQ---------ltAV~~~a~~--- 208 (346)
T PRK05096 143 AKAREAW-PDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTR-VKTGVGYPQ---------LSAVIECADA--- 208 (346)
T ss_pred HHHHHhC-CCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCc-cccccChhH---------HHHHHHHHHH---
Confidence 3455443 456789999999999887665 7887643 33333221 112445551 2223333221
Q ss_pred hHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCC
Q 042063 144 HDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSS 208 (575)
Q Consensus 144 hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~ 208 (575)
...+.+|||||+--- +--..+|.|. +||..|-|---..
T Consensus 209 ---------------------a~~~gvpiIADGGi~-----~sGDI~KAla-aGAd~VMlGsllA 246 (346)
T PRK05096 209 ---------------------AHGLGGQIVSDGGCT-----VPGDVAKAFG-GGADFVMLGGMLA 246 (346)
T ss_pred ---------------------HHHcCCCEEecCCcc-----cccHHHHHHH-cCCCEEEeChhhc
Confidence 012238999995333 3345566664 9999998866543
No 113
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=49.21 E-value=54 Score=33.22 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=48.8
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEE
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVA 249 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiA 249 (575)
+++|.|-..++..... .+.+...++.|+..|+|=|+..+. ... .+.+.+|+.... .-+..|+|+-
T Consensus 8 lylvt~~~~~~~~~~~-~~~ve~al~~Gv~~vQlR~K~~~~--------~~~---~~~a~~~~~lc~---~~~v~liINd 72 (211)
T COG0352 8 LYLVTDRPLIYDGVDL-LEWVEAALKGGVTAVQLREKDLSD--------EEY---LALAEKLRALCQ---KYGVPLIIND 72 (211)
T ss_pred eEEEcCCccccccchh-HHHHHHHHhCCCeEEEEecCCCCh--------HHH---HHHHHHHHHHHH---HhCCeEEecC
Confidence 6777777766654332 788999999999999999997311 010 344455555543 3479999999
Q ss_pred eeccc
Q 042063 250 RTDAE 254 (575)
Q Consensus 250 RTDA~ 254 (575)
|.|--
T Consensus 73 ~~dlA 77 (211)
T COG0352 73 RVDLA 77 (211)
T ss_pred cHHHH
Confidence 99864
No 114
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=47.35 E-value=1.3e+02 Score=32.58 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=30.1
Q ss_pred HHHHHhhhh-CCCceeecCCCCHHHHHHHHc-cCCeEeechHH
Q 042063 67 WRTLKTHQA-NGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQ 107 (575)
Q Consensus 67 ~~lL~~~~~-~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~ 107 (575)
|+.++.+.+ -+.|+++-|+.++-.|....+ |.++|.+|+.+
T Consensus 202 ~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhg 244 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHG 244 (344)
T ss_pred HHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCC
Confidence 455554433 246899999999888876665 89999999843
No 115
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.59 E-value=21 Score=33.49 Aligned_cols=33 Identities=24% Similarity=0.140 Sum_probs=29.0
Q ss_pred eeeeCCCCCCCchHHHHHHHHHHHcCceEEEec
Q 042063 172 IIADGDTGFGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 172 IIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
++++.|+|+.+..++.++++.+++.|+.||.+-
T Consensus 1 ~~~~~~~~~~d~~~~~~~~~~~~~~gv~gi~~~ 33 (201)
T cd00945 1 IDLTLLHPDATLEDIAKLCDEAIEYGFAAVCVN 33 (201)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHhCCcEEEEC
Confidence 456789999999999999999999999998764
No 116
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=46.42 E-value=1.7e+02 Score=32.18 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=26.4
Q ss_pred CCceeecCCCCHHHHHHHHc-cCCeEeechHH
Q 042063 77 GTASRTFGALDPVQVTMMAK-HLDSIYVSGWQ 107 (575)
Q Consensus 77 ~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~ 107 (575)
+.|+++-|+.++-.|++..+ |.++|.+|+.+
T Consensus 236 ~~pviiKgV~~~eda~~a~~~G~d~I~VSnhG 267 (361)
T cd04736 236 PHKLLVKGIVTAEDAKRCIELGADGVILSNHG 267 (361)
T ss_pred CCCEEEecCCCHHHHHHHHHCCcCEEEECCCC
Confidence 57999999999999987666 89999998743
No 117
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=46.33 E-value=76 Score=33.08 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=45.7
Q ss_pred HHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHH
Q 042063 68 RTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFF 139 (575)
Q Consensus 68 ~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~ 139 (575)
..||+.|..++|+.+.-+||..+|+...+ |.+..-+.- ..+- +.+|+.----++++++.-.++.+.+
T Consensus 28 ~~lRqk~~~g~p~t~~TAYD~~~a~~~~~ag~dv~LVGD-Sl~M----t~~GhdtTlpiSl~e~~yH~~sV~R 95 (306)
T KOG2949|consen 28 TTLRQKHRAGEPITMVTAYDYPSAVHFDTAGIDVCLVGD-SLAM----TVHGHDTTLPISLEEMLYHCRSVAR 95 (306)
T ss_pred HHHHHHHhcCCceEEEEecccchhhhhhhcCCcEEEecc-chhh----eeeccccceeeeHHHHHHHHHHHHc
Confidence 35677778899999999999999998776 788877654 2222 2455533333556666666666643
No 118
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=45.08 E-value=1.3e+02 Score=29.67 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=48.1
Q ss_pred ceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccH
Q 042063 79 ASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSR 157 (575)
Q Consensus 79 ~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~ 157 (575)
..+.+.+.+...+..+.+ |.+.|++.+.... . ..+..+ ....+.++++.+
T Consensus 103 i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~----G-~~~~~~------~~~~~~i~~i~~------------------ 153 (236)
T cd04730 103 IKVIPTVTSVEEARKAEAAGADALVAQGAEAG----G-HRGTFD------IGTFALVPEVRD------------------ 153 (236)
T ss_pred CEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCC----C-CCCccc------cCHHHHHHHHHH------------------
Confidence 445667777766665544 7888887664111 0 111111 123445555532
Q ss_pred hhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 158 EERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 158 e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
.++ +||++.+ |...+ +.++++++.|+.||.+--..
T Consensus 154 -------~~~--~Pvi~~G--GI~~~----~~v~~~l~~GadgV~vgS~l 188 (236)
T cd04730 154 -------AVD--IPVIAAG--GIADG----RGIAAALALGADGVQMGTRF 188 (236)
T ss_pred -------HhC--CCEEEEC--CCCCH----HHHHHHHHcCCcEEEEchhh
Confidence 235 8999964 33333 44555567999999997665
No 119
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.95 E-value=91 Score=35.53 Aligned_cols=108 Identities=10% Similarity=0.005 Sum_probs=55.1
Q ss_pred HHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHH
Q 042063 69 TLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRK 147 (575)
Q Consensus 69 lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~ 147 (575)
.+++.+..+-++..-|+.++-.|..+.+ |.++|.++= +-.+... .....+.+.-+++.+++.++...+. .
T Consensus 276 ~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~-g~Gs~c~--tr~~~~~g~~~~~ai~~~~~a~~~~------~ 346 (502)
T PRK07107 276 WIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGI-GGGSICI--TREQKGIGRGQATALIEVAKARDEY------F 346 (502)
T ss_pred HHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECC-CCCcCcc--cccccCCCccHHHHHHHHHHHHHHH------H
Confidence 3444432223466667999888887665 899998831 1111100 1112233322233333333221100 0
Q ss_pred HHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 148 QREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 148 q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
......+|||+|+---+| -..+|.+. +||.+|-|---.
T Consensus 347 ----------------~~~g~~~~viadgGir~~-----gdi~KAla-~GA~~vm~G~~~ 384 (502)
T PRK07107 347 ----------------EETGVYIPICSDGGIVYD-----YHMTLALA-MGADFIMLGRYF 384 (502)
T ss_pred ----------------hhcCCcceEEEcCCCCch-----hHHHHHHH-cCCCeeeeChhh
Confidence 001112899999644443 45566665 999999886654
No 120
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=44.48 E-value=61 Score=34.80 Aligned_cols=91 Identities=19% Similarity=0.251 Sum_probs=62.1
Q ss_pred CcEEeeccCCCCHHHHHhHHhhhhhcCC--CceeeecCCccccccc---CC-----------------------CCHHHH
Q 042063 403 ADLIWMETASPDLAECTKFAGGIKSKHP--EIMLAYNLSPSFNWDA---SG-----------------------MTDEEM 454 (575)
Q Consensus 403 aDl~W~Et~~P~l~~a~~Fa~~i~~~~P--~~~laYN~SPSFnW~~---~G-----------------------~s~~~i 454 (575)
+|++|+||- -|+.++|.=..+++++|- +..|.+=+|-++.=+- .| +-++.|
T Consensus 157 ~D~iLiET~-~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m 235 (311)
T COG0646 157 ADLILIETI-FDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCALGPDEM 235 (311)
T ss_pred CcEEEEehh-ccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhccCCcEEeeccccCHHHH
Confidence 999999995 599999999999999986 3467777777776421 11 236667
Q ss_pred HhhHHHHHhc-Cceeeeecchh----------hhhhhhhHHHHHHHHHHhh
Q 042063 455 KDFIPRIAKL-GFCWQFITLAG----------FHADALVVDTFAKDYARRG 494 (575)
Q Consensus 455 ~~F~~~L~~~-G~~~Q~ItLaG----------~H~~~~~~~~la~~~~~~G 494 (575)
+..+.+|++. ....-..+-|| ++.+..-|.+-.+.|.++|
T Consensus 236 ~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g 286 (311)
T COG0646 236 RPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEG 286 (311)
T ss_pred HHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhC
Confidence 7777777766 55555555555 4555555556666666665
No 121
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=44.06 E-value=2.7e+02 Score=25.96 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=51.2
Q ss_pred CceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 042063 78 TASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMS 156 (575)
Q Consensus 78 ~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~ 156 (575)
+..+-..++++..+....+ |.+.|.++..--+. ..|... .|. -++.++++..
T Consensus 95 ~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~-------~~~~~~-~~~--~~~~~~~~~~----------------- 147 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEELGADYVGFGPVFPTP-------TKPGAG-PPL--GLELLREIAE----------------- 147 (196)
T ss_pred CCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCC-------CCCCCC-CCC--CHHHHHHHHH-----------------
Confidence 4455666788877665444 79999876431111 011110 111 2445555531
Q ss_pred HhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 157 REERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 157 ~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
..+ +||+|+ ||.. .++++.+.++|+.||.+--..
T Consensus 148 --------~~~--~pv~a~-----GGi~--~~~i~~~~~~Ga~~i~~g~~i 181 (196)
T cd00564 148 --------LVE--IPVVAI-----GGIT--PENAAEVLAAGADGVAVISAI 181 (196)
T ss_pred --------hCC--CCEEEE-----CCCC--HHHHHHHHHcCCCEEEEehHh
Confidence 134 899999 4443 367889999999999887655
No 122
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=43.88 E-value=79 Score=30.22 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=48.8
Q ss_pred CCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhhhHHHHHHHHHH
Q 042063 413 PDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDYAR 492 (575)
Q Consensus 413 P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~~~~ 492 (575)
.++++++.+.+..++.-+...+.-.+.|-..+.+.|++.+++..+...+.+.++ +.+.|+|+---+... ...+-.
T Consensus 88 ds~~~l~~l~~~~~~~~~~~~v~lrv~~g~~~~R~G~~~~e~~~~~~~i~~~~~----l~l~Gl~~H~~~~~~-~~~~~~ 162 (211)
T cd06808 88 DSLEELEKLEEAALKAGPPARVLLRIDTGDENGKFGVRPEELKALLERAKELPH----LRLVGLHTHFGSADE-DYSPFV 162 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhCCC----CcEEEEEEecCCCCC-CHHHHH
Confidence 445666666544433223333333333433588999999999999999888763 566677665443332 111223
Q ss_pred hhHHHHHHHHHH
Q 042063 493 RGMLAYVERIQR 504 (575)
Q Consensus 493 ~GM~aYv~~vQ~ 504 (575)
+-+..+.+.+.+
T Consensus 163 ~~~~~~~~~~~~ 174 (211)
T cd06808 163 EALSRFVAALDQ 174 (211)
T ss_pred HHHHHHHHHHHH
Confidence 335555555444
No 123
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=43.56 E-value=2.1e+02 Score=31.43 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=33.8
Q ss_pred HHHHHHhhCCcc----ccC---CchHHHHHHHHHHHhhhhCC--CceeecCCC--CHHHHHHHH-cc-CCeEeechHH
Q 042063 43 ARDVVALRGSLR----QSY---GSNEMAKKLWRTLKTHQANG--TASRTFGAL--DPVQVTMMA-KH-LDSIYVSGWQ 107 (575)
Q Consensus 43 a~~v~~~rgs~~----~~y---~~~~~A~kL~~lL~~~~~~~--~~l~~~Ga~--D~~sA~~~a-~g-f~AIy~SG~~ 107 (575)
-++|+..|+.-+ +.. +.-.....|.+.++.+.+.. .|+.+-.+. ++..+...+ .+ .++|-+||..
T Consensus 171 ~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~ 248 (392)
T cd02808 171 TEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAE 248 (392)
T ss_pred CHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 357888887522 121 11122233444444443332 466544443 566554444 34 9999999964
No 124
>PLN02489 homocysteine S-methyltransferase
Probab=43.33 E-value=29 Score=37.26 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.6
Q ss_pred CCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCce
Q 042063 400 APHADLIWMETASPDLAECTKFAGGIKSKHPEIM 433 (575)
Q Consensus 400 apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~ 433 (575)
.+.+|+|++|| -|++.+++...+.+++..+++.
T Consensus 178 ~~gvD~i~~ET-~~~l~E~~a~~~~~~~~~~~~p 210 (335)
T PLN02489 178 EAGPDLIAFET-IPNKLEAQAYVELLEEENIKIP 210 (335)
T ss_pred hCCCCEEEEec-cCChHHHHHHHHHHHHcCCCCe
Confidence 56799999999 8999999999999988766653
No 125
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=43.24 E-value=2.3e+02 Score=28.03 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=48.8
Q ss_pred CceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 042063 78 TASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMS 156 (575)
Q Consensus 78 ~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~ 156 (575)
+..+.+++.+.-.+..+.+ |++.|.++..+.-. .+. .+.....+.+++|.+
T Consensus 119 ~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~--------~~~---~~~~~~~~~i~~i~~----------------- 170 (221)
T PRK01130 119 GQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTE--------ETK---KPEEPDFALLKELLK----------------- 170 (221)
T ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeec--------CCC---CCCCcCHHHHHHHHH-----------------
Confidence 4556678888877765544 88888654322111 010 011112455566532
Q ss_pred HhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 157 REERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 157 ~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
.++ +||++.+ |..++ +.++.+.+.||.||-+=-..
T Consensus 171 --------~~~--iPvia~G--GI~t~----~~~~~~l~~GadgV~iGsai 205 (221)
T PRK01130 171 --------AVG--CPVIAEG--RINTP----EQAKKALELGAHAVVVGGAI 205 (221)
T ss_pred --------hCC--CCEEEEC--CCCCH----HHHHHHHHCCCCEEEEchHh
Confidence 245 9999843 44334 45566778999999876443
No 126
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=43.04 E-value=95 Score=32.90 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=62.9
Q ss_pred CceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 042063 78 TASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMS 156 (575)
Q Consensus 78 ~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~ 156 (575)
+..+++-+.+.--|....+ |.++|.+.|..... ..+ + .+ -...+.++.+
T Consensus 109 g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagG-----h~g--~---~~---~~~ll~~v~~----------------- 158 (307)
T TIGR03151 109 GVKVIPVVASVALAKRMEKAGADAVIAEGMESGG-----HIG--E---LT---TMALVPQVVD----------------- 158 (307)
T ss_pred CCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCC-----CCC--C---Cc---HHHHHHHHHH-----------------
Confidence 4555667777766765554 89999998873221 111 1 11 2344555532
Q ss_pred HhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHH
Q 042063 157 REERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARL 236 (575)
Q Consensus 157 ~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~ 236 (575)
.++ +|||+.+.-+- . +.+..+...||.||.+--......-|+ -.+.+-++|..+.
T Consensus 159 --------~~~--iPviaaGGI~~--~----~~~~~al~~GA~gV~iGt~f~~t~Es~--------~~~~~k~~l~~~~- 213 (307)
T TIGR03151 159 --------AVS--IPVIAAGGIAD--G----RGMAAAFALGAEAVQMGTRFLCAKECN--------VHPNYKEKVLKAK- 213 (307)
T ss_pred --------HhC--CCEEEECCCCC--H----HHHHHHHHcCCCEeecchHHhcccccC--------CCHHHHHHHHhCC-
Confidence 245 99999875543 3 223444458999999866543223231 1134555554432
Q ss_pred hhhhcCCceEEEEe
Q 042063 237 QFDVMGVETVLVAR 250 (575)
Q Consensus 237 a~d~~g~d~vIiAR 250 (575)
..|+++.-+
T Consensus 214 -----~~dt~~t~~ 222 (307)
T TIGR03151 214 -----DRDTVVTGA 222 (307)
T ss_pred -----CCCEEEEec
Confidence 467776644
No 127
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.87 E-value=1.5e+02 Score=31.91 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=29.8
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
+||++=.--++ ...++.++++.+.++||.||.+-.-.
T Consensus 212 ~PV~vKlsp~~-~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 212 VPLLVKIAPDL-SDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CceEEEeCCCC-CHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 89998887543 23468899999999999999998754
No 128
>PF09762 KOG2701: Coiled-coil domain-containing protein (DUF2037); InterPro: IPR019159 This entry represents a family of coiled-coil-containing proteins conserved from plants to vertebrates. It includes Drosophila fidipidine, whose function is unknown.
Probab=42.83 E-value=14 Score=36.67 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=48.4
Q ss_pred cccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCc
Q 042063 384 RFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSP 440 (575)
Q Consensus 384 ~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SP 440 (575)
++-||+--||.+. .+.+-+|++.-|.. ++.+=..-.+.|-+..|...=-|+++|
T Consensus 27 kivGGi~W~i~~~-~~~v~~dllf~E~~--~i~~Ki~~~ekIv~~L~~m~CP~~l~p 80 (182)
T PF09762_consen 27 KIVGGITWCITRC-NVDVDVDLLFQENS--TIGQKIALCEKIVEALPKMKCPHRLEP 80 (182)
T ss_pred HHHhHHHHHHHhc-CCCCCccchhcccc--cHHHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 4559999999999 89999999999988 788888999999999998888888888
No 129
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=42.53 E-value=81 Score=32.23 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=49.0
Q ss_pred CceeeeCCCCC--CC-ch--HHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCc
Q 042063 170 KPIIADGDTGF--GG-TT--ATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVE 244 (575)
Q Consensus 170 lPIIAD~DtGf--Gg-~~--nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d 244 (575)
+||++-.++|| |. +. .....++..++.||.+|.+.+... . .+..++++.+++++..++..|.+
T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g-~-----------~~~~~~~~~~~~i~~~~~~~g~~ 138 (258)
T TIGR01949 71 VGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVG-S-----------DTEWEQIRDLGMIAEICDDWGVP 138 (258)
T ss_pred CcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecC-C-----------chHHHHHHHHHHHHHHHHHcCCC
Confidence 66777665554 32 21 244669999999999999999862 1 12357778888888777667888
Q ss_pred eEEEEeec
Q 042063 245 TVLVARTD 252 (575)
Q Consensus 245 ~vIiARTD 252 (575)
++|+.=.|
T Consensus 139 liv~~~~~ 146 (258)
T TIGR01949 139 LLAMMYPR 146 (258)
T ss_pred EEEEEecc
Confidence 87754444
No 130
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=42.33 E-value=31 Score=34.02 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=31.4
Q ss_pred CceeeeCCC---CCCC---chHHHHHHHHHHHcCceEEEeccCC
Q 042063 170 KPIIADGDT---GFGG---TTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 170 lPIIAD~Dt---GfGg---~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
+||||+..- +.|. ..+..++++.|+++||.+||+-|..
T Consensus 11 ~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~ 54 (217)
T cd00331 11 LGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEP 54 (217)
T ss_pred ceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCc
Confidence 899999876 4342 3468899999999999999999876
No 131
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=41.35 E-value=1.6e+02 Score=31.41 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=32.5
Q ss_pred CCCCCCceeeeCCCCCCC-chHHHHHHHHHHHcCceEEEeccCC
Q 042063 165 CVDYLKPIIADGDTGFGG-TTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 165 ~vd~~lPIIAD~DtGfGg-~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
.++ +||.+=.-.|+-. ..+..++++.++++|+.+|++..-.
T Consensus 131 a~d--~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt 172 (321)
T PRK10415 131 AVD--VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT 172 (321)
T ss_pred hcC--CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCc
Confidence 356 8999888777754 3468899999999999999987543
No 132
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=41.01 E-value=1.2e+02 Score=32.04 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=29.3
Q ss_pred CceeeeCCCCC--CCchHHHHHHHHHHHcCceEEEec
Q 042063 170 KPIIADGDTGF--GGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 170 lPIIAD~DtGf--Gg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
+||||=-|+-. .+...+.+-++.|.+|||.+|-++
T Consensus 153 ~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 153 FMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred eEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 89999888642 146677888999999999999998
No 133
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=40.92 E-value=63 Score=35.27 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=57.2
Q ss_pred HHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeec---hHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhh
Q 042063 68 RTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVS---GWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQY 143 (575)
Q Consensus 68 ~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~S---G~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~ 143 (575)
+.|++.+- +-+++.-|+-++-.|..+.+ |.++|=+. |..|..- ..+.-|+|- ...|....++
T Consensus 141 k~ik~~~~-~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr-~v~GvG~PQ---------~tAv~~~a~~--- 206 (352)
T PF00478_consen 141 KKIKKKFP-DVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTR-EVTGVGVPQ---------LTAVYECAEA--- 206 (352)
T ss_dssp HHHHHHST-TSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHH-HHHSBSCTH---------HHHHHHHHHH---
T ss_pred HHHHHhCC-CceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccc-cccccCCcH---------HHHHHHHHHH---
Confidence 34555543 57899999999999987765 77777664 5555431 112345552 1223333221
Q ss_pred hHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCC
Q 042063 144 HDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSS 208 (575)
Q Consensus 144 hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~ 208 (575)
..+|.+|||||+.--+. -..+|. +.+||..|-+---..
T Consensus 207 ---------------------a~~~~v~iIADGGi~~s-----GDi~KA-la~GAd~VMlG~llA 244 (352)
T PF00478_consen 207 ---------------------ARDYGVPIIADGGIRTS-----GDIVKA-LAAGADAVMLGSLLA 244 (352)
T ss_dssp ---------------------HHCTTSEEEEESS-SSH-----HHHHHH-HHTT-SEEEESTTTT
T ss_pred ---------------------hhhccCceeecCCcCcc-----cceeee-eeecccceeechhhc
Confidence 12345999999755544 333444 568999999876554
No 134
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=40.53 E-value=3.2e+02 Score=29.15 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=29.9
Q ss_pred CCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCC
Q 042063 165 CVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 165 ~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
.++ +||++=.=- +..++.++++.+.++||.||.+-...
T Consensus 161 ~~~--iPv~vKl~p---~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 161 AVT--IPVAVKLSP---FFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred ccC--CCEEEEcCC---CccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 355 899998642 33468899999999999999997764
No 135
>PLN02591 tryptophan synthase
Probab=39.81 E-value=1.1e+02 Score=31.73 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=25.5
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccC
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQ 206 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ 206 (575)
++ +||++ |||=. -.+.++++.+.||.|+-+--.
T Consensus 188 ~~--~Pv~v----GFGI~--~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 188 TD--KPVAV----GFGIS--KPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred CC--CceEE----eCCCC--CHHHHHHHHhcCCCEEEECHH
Confidence 56 99997 99932 246778899999999987554
No 136
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=39.75 E-value=1.1e+02 Score=32.18 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=44.0
Q ss_pred CceeeeCCC------CCC-----CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHH
Q 042063 170 KPIIADGDT------GFG-----GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAA 234 (575)
Q Consensus 170 lPIIAD~Dt------GfG-----g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AA 234 (575)
.|||.|+-+ |.| ...-|..|+|.-+..|++|+-||--- .|+.- -.+|.-.+|.+++-.-|...
T Consensus 191 ~PViFDaTHSvQ~pgg~g~~SGG~refv~~LaRAa~AvGvaGlF~EtHp-dP~~A-~sDgp~mlpL~~le~ll~~l 264 (279)
T COG2877 191 APVIFDATHSVQQPGGQGGSSGGRREFVPTLARAAVAVGVAGLFIETHP-DPDNA-KSDGPNMLPLDKLEALLEQL 264 (279)
T ss_pred CCeEEecccceeCCCCCCCCCCCcchhHHHHHHHHHHhccceEEEeccC-CcccC-CCCCccccCHHHHHHHHHHH
Confidence 899999743 444 24678899999999999999999764 33321 12677778876665544443
No 137
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=39.65 E-value=2.6e+02 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=25.0
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEe
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHI 203 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhI 203 (575)
+||++=. .|+|.. .+.++.+.++||.+|.+
T Consensus 187 vPVivK~-~g~g~s---~~~a~~l~~~Gvd~I~V 216 (352)
T PRK05437 187 VPVIVKE-VGFGIS---KETAKRLADAGVKAIDV 216 (352)
T ss_pred CCEEEEe-CCCCCc---HHHHHHHHHcCCCEEEE
Confidence 9999864 466633 68899999999999999
No 138
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=39.18 E-value=46 Score=34.22 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=56.2
Q ss_pred HHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHHHHH
Q 042063 188 KLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVDTRD 267 (575)
Q Consensus 188 ~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId~R~ 267 (575)
-.++.++++|+.+|-+-|.. ..-.+|+.+ -.+++.+|++..+++++.+. +...||+=-|.-..+..+++++ -.
T Consensus 23 ~sA~i~e~aG~dai~v~~s~-~a~~~G~pD-~~~vtl~em~~~~~~I~r~~----~~~pviaD~~~G~g~~~~~~~~-~~ 95 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQ-GMTVAGYDD-TLPYPVNDVPYHVRAVRRGA----PLALIVADLPFGAYGAPTAAFE-LA 95 (240)
T ss_pred HHHHHHHHcCCCEEEEChHH-HHHhcCCCC-CCCcCHHHHHHHHHHHHhhC----CCCCEEEeCCCCCCcCHHHHHH-HH
Confidence 34688899999999999987 345566554 36789999999999998654 2357787777665554455655 66
Q ss_pred Hhhh
Q 042063 268 HQFI 271 (575)
Q Consensus 268 ~aYi 271 (575)
+.|+
T Consensus 96 ~~l~ 99 (240)
T cd06556 96 KTFM 99 (240)
T ss_pred HHHH
Confidence 6776
No 139
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=38.88 E-value=2.2e+02 Score=31.08 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhH----HHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCc
Q 042063 294 AGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKR----RRLNEWMNLSSYDKCLSSEQCREIAERLGLKNL 369 (575)
Q Consensus 294 ~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~ 369 (575)
+..|.+||.++.++|. +|.+...+.|++.+.+.- -.+.+|++-..
T Consensus 138 ~~mt~~eI~~ii~~f~---------~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~---------------------- 186 (382)
T cd02931 138 RELTTEEVETFVGKFG---------ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLF---------------------- 186 (382)
T ss_pred CcCCHHHHHHHHHHHH---------HHHHHHHHcCCCEEEEeccccChHHHHhcCCcc----------------------
Confidence 4478999999988855 666666666775554432 24556655321
Q ss_pred cccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCC-CceeeecCCcc-------
Q 042063 370 FWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHP-EIMLAYNLSPS------- 441 (575)
Q Consensus 370 ~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P-~~~laYN~SPS------- 441 (575)
-.||.| | -|.++- |. .-..+..++||+..| +..+.+.+||.
T Consensus 187 -----N~RtDe--y--GGslen---R~-------------------rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~ 235 (382)
T cd02931 187 -----NKRTDK--Y--GGSLEN---RL-------------------RFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLR 235 (382)
T ss_pred -----CCCCCc--C--CCCHHH---Hh-------------------HHHHHHHHHHHHhcCCCceEEEEEechhhccccc
Confidence 156666 3 233332 21 123466778888876 45788888862
Q ss_pred ------cccccCCCCHHHHHhhHHHHHhcCceeeeecch
Q 042063 442 ------FNWDASGMTDEEMKDFIPRIAKLGFCWQFITLA 474 (575)
Q Consensus 442 ------FnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLa 474 (575)
-.+...|++.++...|.+.|.+.|+ .+|.+.
T Consensus 236 ~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gv--D~l~vs 272 (382)
T cd02931 236 QGALPGEEFQEKGRDLEEGLKAAKILEEAGY--DALDVD 272 (382)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHhCC--CEEEeC
Confidence 1234568999999999999999995 566553
No 140
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=38.06 E-value=1.2e+02 Score=28.50 Aligned_cols=24 Identities=8% Similarity=0.254 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHcCceEEEeccCC
Q 042063 184 TATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 184 ~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
.+..+.++.+.++|+.+|||.+..
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~ 35 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKD 35 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCC
Confidence 456788999999999999999865
No 141
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.63 E-value=2.3e+02 Score=26.97 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=62.5
Q ss_pred CcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCccccccc-CCCCHHHH---------------HhhHHHHHhcCc
Q 042063 403 ADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDA-SGMTDEEM---------------KDFIPRIAKLGF 466 (575)
Q Consensus 403 aDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~-~G~s~~~i---------------~~F~~~L~~~G~ 466 (575)
..+.+++.+.-|.+..+++.+.+.+.+++.-.++|+....+... ..++++++ +.|...+.+.|
T Consensus 56 ~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~- 134 (249)
T PRK12825 56 RRAQAVQADVTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR- 134 (249)
T ss_pred CceEEEECCcCCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-
Confidence 34667888888888999998888888888888898877544322 12454443 23444444555
Q ss_pred eeeeecchhhhhh----hhhHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcc
Q 042063 467 CWQFITLAGFHAD----ALVVDTFAKDYARRGMLAYVERIQREERNNGVDTL 514 (575)
Q Consensus 467 ~~Q~ItLaG~H~~----~~~~~~la~~~~~~GM~aYv~~vQ~~E~~~g~d~~ 514 (575)
+-+||.+...+.. ....+-.+ +..+.++++...+..+..|+.+.
T Consensus 135 ~~~~i~~SS~~~~~~~~~~~~y~~s----K~~~~~~~~~~~~~~~~~~i~~~ 182 (249)
T PRK12825 135 GGRIVNISSVAGLPGWPGRSNYAAA----KAGLVGLTKALARELAEYGITVN 182 (249)
T ss_pred CCEEEEECccccCCCCCCchHHHHH----HHHHHHHHHHHHHHHhhcCeEEE
Confidence 3455555544332 22223333 34466666666554444565543
No 142
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.62 E-value=1.7e+02 Score=30.73 Aligned_cols=36 Identities=6% Similarity=-0.106 Sum_probs=28.8
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHc--CceEEEec
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVER--GAAGVHIE 204 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieA--GaAGIhIE 204 (575)
++ +||++=.=-++ +..++.++++.+.++ ||+||.+=
T Consensus 156 ~~--iPv~vKl~p~~-~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 156 YS--IPVGVKTPPYT-DPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred cC--CCEEEEeCCCC-CHHHHHHHHHHHhccccCCcEEEEE
Confidence 45 99999886655 556788999999999 99999853
No 143
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=36.51 E-value=5.3e+02 Score=28.43 Aligned_cols=88 Identities=27% Similarity=0.314 Sum_probs=52.8
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcc---cCHHHHHHHHHHHHH-hhhhcC-Cc
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVL---VAISEHINRLVAARL-QFDVMG-VE 244 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~L---vp~~E~v~RL~AAR~-a~d~~g-~d 244 (575)
+|||+ |+..+ .+.++.+.++||.||.+=- ..+|....++ +|..+.+..+.++|. -.+..+ ..
T Consensus 189 IPVI~------G~V~t-~e~A~~~~~aGaDgV~~G~------gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~ 255 (369)
T TIGR01304 189 VPVIA------GGVND-YTTALHLMRTGAAGVIVGP------GGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRY 255 (369)
T ss_pred CCEEE------eCCCC-HHHHHHHHHcCCCEEEECC------CCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99997 33322 4667777789999998211 1123333344 788888888887764 234444 23
Q ss_pred eEEEEeecccccCchHHHHHHHHHhhhhccCCC
Q 042063 245 TVLVARTDAEAATLIQTNVDTRDHQFILGVTNP 277 (575)
Q Consensus 245 ~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~ 277 (575)
.-||| .++|...-| =.++...||..+
T Consensus 256 vpVIA------dGGI~tg~d-i~kAlAlGAdaV 281 (369)
T TIGR01304 256 VHVIA------DGGIETSGD-LVKAIACGADAV 281 (369)
T ss_pred ceEEE------eCCCCCHHH-HHHHHHcCCCEe
Confidence 44553 456655555 566666776543
No 144
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=36.50 E-value=76 Score=34.22 Aligned_cols=151 Identities=20% Similarity=0.175 Sum_probs=74.1
Q ss_pred CceeeeCCC----CCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCce
Q 042063 170 KPIIADGDT----GFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVET 245 (575)
Q Consensus 170 lPIIAD~Dt----GfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~ 245 (575)
+=+|+|.-. |.-.......+.++|...|=.-+.++|.- ++++..+=|..|+.. .+.+.
T Consensus 175 Li~i~D~N~~q~dg~~~~~~~~~~~~k~~a~Gw~v~~v~dGh---------------d~~~i~~A~~~a~~~---~~kP~ 236 (332)
T PF00456_consen 175 LIVIYDSNGIQIDGPTDIVFSEDIAKKFEAFGWNVIEVCDGH---------------DVEAIYAAIEEAKAS---KGKPT 236 (332)
T ss_dssp EEEEEEEESEETTEEGGGTHHSHHHHHHHHTT-EEEEEEETT---------------BHHHHHHHHHHHHHS---TSS-E
T ss_pred EEEEEecCCcccCCCcccccchHHHHHHHHhhhhhcccccCc---------------HHHHHHHHHHHHHhc---CCCCc
Confidence 446666421 22222334566889999999888885543 234444444444422 26789
Q ss_pred EEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHH
Q 042063 246 VLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAV 325 (575)
Q Consensus 246 vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l 325 (575)
+||+||=- . +.-++.+|... .|....+.+|+.++.+++.-...-..+++-|.+.+
T Consensus 237 ~Ii~~Tvk--G---------~G~~~~e~~~~--------------~Hg~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f 291 (332)
T PF00456_consen 237 VIIARTVK--G---------KGVPFMEGTAK--------------WHGSPLTEEEVEQAKKELGWDQEPFEVPEEVYDHF 291 (332)
T ss_dssp EEEEEE-T--T---------TTSTTTTTSGG--------------GTSS--HHHHHHHHHHHTTSSTSTTCGCHHHHHHH
T ss_pred eeecceEE--e---------cCchhhcccch--------------hhccCCcHHHHHHHHHHcCCCCCCcccCHHHHHHH
Confidence 99999931 1 22223332110 13223456777777776655444444555555555
Q ss_pred hccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCC
Q 042063 326 NNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGL 366 (575)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~ 366 (575)
++. .......+++|.+.+......-..+++++-+.+.|
T Consensus 292 ~~~---~~~g~~~~~~W~~~~~~y~~~~P~~a~el~~~l~g 329 (332)
T PF00456_consen 292 RER---IAEGAKAEAEWKELFAAYKKKYPEEAQELERRLNG 329 (332)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred HHh---hhhHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcC
Confidence 431 11234444555555432111123455555554443
No 145
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=36.42 E-value=2.7e+02 Score=32.99 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=62.4
Q ss_pred eeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEee
Q 042063 172 IIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVART 251 (575)
Q Consensus 172 IIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiART 251 (575)
|..|+++--.-.. .+.++|+..|=--|+.+|-. +.++.-.-|..|+..- +.+++|++||
T Consensus 189 IsiDG~~~~~f~e---d~~~RfeAyGW~vi~~~DG~---------------D~e~I~~Ai~~Ak~~~---dkPtlI~~kT 247 (663)
T COG0021 189 ISIDGDTSLSFTE---DVAKRFEAYGWNVIRVIDGH---------------DLEAIDKAIEEAKAST---DKPTLIIVKT 247 (663)
T ss_pred ceeccCcccccch---hHHHHHHhcCCeEEEecCCC---------------CHHHHHHHHHHHHhcC---CCCeEEEEEe
Confidence 5567777655444 45689999999888888853 2344444556666432 4789999999
Q ss_pred cccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHh
Q 042063 252 DAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVN 326 (575)
Q Consensus 252 DA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~ 326 (575)
=- = | |+.+..-. .. .|-.-...+||.++.++|.-..+-+..++.|.+..+
T Consensus 248 iI----------G-----~--Gsp~kegt--~~------~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~ 297 (663)
T COG0021 248 II----------G-----K--GSPNKEGT--HK------VHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFR 297 (663)
T ss_pred ee----------e-----c--CCCCcCCC--cc------ccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHH
Confidence 31 1 1 22110000 00 021123456677777776665433666776666654
No 146
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=36.33 E-value=59 Score=34.39 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=39.3
Q ss_pred CHHHHHhHHhhhhhcCCC--ceeeecCC---------cccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhh
Q 042063 414 DLAECTKFAGGIKSKHPE--IMLAYNLS---------PSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHA 478 (575)
Q Consensus 414 ~l~~a~~Fa~~i~~~~P~--~~laYN~S---------PSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~ 478 (575)
++++++.+.+..++.-|. ..|-.|.. ++-.|++.|++.+++..+...+.++| +.|.|+|+
T Consensus 99 s~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~~~~~~~~~~~-----l~l~Gl~~ 169 (368)
T cd06810 99 SLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERAKELD-----LRLVGLHF 169 (368)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHHHHHHHHHhCC-----CcEEEEEE
Confidence 456776665554443333 34444432 33567899999999999988888877 45557764
No 147
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=36.00 E-value=2.8e+02 Score=29.52 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCHHHHHhHHhhhhhcCCCceeee----cCC-------------cc-ccccc--CCCCHHHHHhhHHHHHhcCceeeeec
Q 042063 413 PDLAECTKFAGGIKSKHPEIMLAY----NLS-------------PS-FNWDA--SGMTDEEMKDFIPRIAKLGFCWQFIT 472 (575)
Q Consensus 413 P~l~~a~~Fa~~i~~~~P~~~laY----N~S-------------PS-FnW~~--~G~s~~~i~~F~~~L~~~G~~~Q~It 472 (575)
+++..--+-|..|++++.+..+-| |+. .| .+... .-+|.|+|..-+..+.++|..--+|+
T Consensus 14 ~~~~~L~~~A~~ir~~~~g~~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~ 93 (343)
T TIGR03551 14 GNLFELFRLADELRRDIVGDTVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQ 93 (343)
T ss_pred ChHHHHHHHHHHHHHHhcCCeEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 788888999999999988876655 211 21 11111 12799999999999999996654444
Q ss_pred chhhhhh--hhhHHHHHHHHHHhh--HH--HH----------------HHHHHHHHHhcCCCccccccccCchhH-HHHH
Q 042063 473 LAGFHAD--ALVVDTFAKDYARRG--ML--AY----------------VERIQREERNNGVDTLAHQKWSGANYY-DKYL 529 (575)
Q Consensus 473 LaG~H~~--~~~~~~la~~~~~~G--M~--aY----------------v~~vQ~~E~~~g~d~~~HQkwsGa~y~-D~~~ 529 (575)
.|.+.. --...++.+..++.+ +. +| -|.+++ =++-|++.+. -+|.+++ |++.
T Consensus 94 -gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~-LkeAGl~~i~---~~~~E~~~~~v~ 168 (343)
T TIGR03551 94 -GGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKR-LKEAGLDSMP---GTAAEILDDEVR 168 (343)
T ss_pred -eCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHH-HHHhCccccc---CcchhhcCHHHH
Confidence 565542 223467777777763 21 11 111111 3567888663 3455666 4566
Q ss_pred HHhcCC
Q 042063 530 KTVQGG 535 (575)
Q Consensus 530 ~~v~~g 535 (575)
+.+..|
T Consensus 169 ~~i~~~ 174 (343)
T TIGR03551 169 KVICPD 174 (343)
T ss_pred HhcCCC
Confidence 555543
No 148
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=35.84 E-value=1e+02 Score=28.95 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=31.0
Q ss_pred HHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcC
Q 042063 266 RDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMA 312 (575)
Q Consensus 266 R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~ 312 (575)
.+..|+ .++.|...|...-+.-.++||.+.+||++..+.-....
T Consensus 8 ~A~~FL---~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 8 QAVKFL---QDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHH---CTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHh---CCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 667798 48888766788877777899999999999877755433
No 149
>PRK09234 fbiC FO synthase; Reviewed
Probab=35.82 E-value=1.2e+02 Score=36.81 Aligned_cols=181 Identities=17% Similarity=0.197 Sum_probs=101.2
Q ss_pred ccccCCCCCCCCc----cccccCcHHHHHHHh-hh--cCCcCcEEee-ccCCCCHHHHHhHHhhhhhcCCCceeeecCCc
Q 042063 369 LFWDWDLPRTREG----FYRFKGSVDAAIIRG-WA--FAPHADLIWM-ETASPDLAECTKFAGGIKSKHPEIMLAYNLSP 440 (575)
Q Consensus 369 ~~~dwd~~Rt~eG----~y~~~gg~~~ai~R~-~a--~apyaDl~W~-Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SP 440 (575)
+|=||+.-|.... --++...+..+|.+. ++ ---..|.+.+ +...+++.+.-+.|..|++++.+..+-|+..-
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~g~~ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~~G~~Vt~vvn~ 528 (843)
T PRK09234 449 AYGDWESIREQVHEGRAPERIDTDVLAALRAAERDPAGLTDDEALALFTADGPALEAVCRLADDLRRDVVGDDVTYVVNR 528 (843)
T ss_pred cccchhhhccccccccCcccccHHHHHHHHHHHhcCCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence 4457876543332 223334444444432 11 1123344433 45678999999999999999988776663332
Q ss_pred cccccc--------------------CCCCHHHHHhhHHHHHhcCceeeeecchhhhh--hhhhHHHHHHHHHHhhH---
Q 042063 441 SFNWDA--------------------SGMTDEEMKDFIPRIAKLGFCWQFITLAGFHA--DALVVDTFAKDYARRGM--- 495 (575)
Q Consensus 441 SFnW~~--------------------~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~--~~~~~~~la~~~~~~GM--- 495 (575)
-.|.+- .-||.++|..=..+..+.|..=-.|. .|.|- .-....++.+..+++.-
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~-gG~~p~~~~~~y~~lir~IK~~~p~i~ 607 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQ-GGIHPELPGTGYADLVRAVKARVPSMH 607 (843)
T ss_pred ceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEe-cCCCCCcCHHHHHHHHHHHHHhCCCee
Confidence 222211 12889999999899999997633333 79986 33344466777776531
Q ss_pred -HHH----------------HHHHHHHHHhcCCCcccc----------------ccccCchhHHHHHHHhcCCcchhhc-
Q 042063 496 -LAY----------------VERIQREERNNGVDTLAH----------------QKWSGANYYDKYLKTVQGGISSTAA- 541 (575)
Q Consensus 496 -~aY----------------v~~vQ~~E~~~g~d~~~H----------------QkwsGa~y~D~~~~~v~~g~sst~a- 541 (575)
.|| -|.+++ =++-|++.+-| -|-+...|++.+..+-.-|-.+++.
T Consensus 608 i~afsp~Ei~~~a~~~Gl~~~e~l~~-LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stm 686 (843)
T PRK09234 608 VHAFSPMEIVNGAARLGLSIREWLTA-LREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTM 686 (843)
T ss_pred EEecChHHHHHHHHHcCCCHHHHHHH-HHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccce
Confidence 111 232222 46778877743 1333334444444444455555544
Q ss_pred -CCCCchhhhh
Q 042063 542 -MGKGVTEDQF 551 (575)
Q Consensus 542 -~g~~~te~qf 551 (575)
.|.+-|.+++
T Consensus 687 m~G~~Et~edr 697 (843)
T PRK09234 687 MYGHVDTPRHW 697 (843)
T ss_pred EEcCCCCHHHH
Confidence 3555566666
No 150
>PRK07534 methionine synthase I; Validated
Probab=35.43 E-value=77 Score=34.13 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=25.4
Q ss_pred CCcCcEEeeccCCCCHHHHHhHHhhhhhc
Q 042063 400 APHADLIWMETASPDLAECTKFAGGIKSK 428 (575)
Q Consensus 400 apyaDl~W~Et~~P~l~~a~~Fa~~i~~~ 428 (575)
.+.+|++++|| -|++.+++..++.+++.
T Consensus 142 ~~gvD~l~~ET-~p~l~E~~a~~~~~~~~ 169 (336)
T PRK07534 142 AGGADVLWVET-ISAPEEIRAAAEAAKLA 169 (336)
T ss_pred hCCCCEEEEec-cCCHHHHHHHHHHHHHc
Confidence 66799999999 89999999999999864
No 151
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=34.88 E-value=3.9e+02 Score=25.57 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=23.4
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccC
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQ 206 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ 206 (575)
+||++|+ |.. .++++.+.++||.++-+-=-
T Consensus 159 ~~i~~~G-----GI~--~~~i~~~~~~Gad~vvvGsa 188 (202)
T cd04726 159 VKVAVAG-----GIT--PDTLPEFKKAGADIVIVGRA 188 (202)
T ss_pred CCEEEEC-----CcC--HHHHHHHHhcCCCEEEEeeh
Confidence 8999995 332 46788999999999987643
No 152
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=34.69 E-value=1.1e+02 Score=32.12 Aligned_cols=54 Identities=6% Similarity=0.039 Sum_probs=40.1
Q ss_pred CceeeeCCCCCC-----CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHH
Q 042063 170 KPIIADGDTGFG-----GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARL 236 (575)
Q Consensus 170 lPIIAD~DtGfG-----g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~ 236 (575)
+.|.+.+++ || ++..+.++++.+.++|+.-|.|-|... +..+.+..+.+++.|.
T Consensus 129 ~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G------------~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 129 IEVNIYLED-WSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLG------------ILSPFETYTYISDMVK 187 (280)
T ss_pred CEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCC------------CCCHHHHHHHHHHHHh
Confidence 557777776 66 577899999999999999999999982 2233455556666654
No 153
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.00 E-value=2.3e+02 Score=29.58 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=24.3
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEecc
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIED 205 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIED 205 (575)
++ +||.+ |||= +-.+.++.+.++||.||.+--
T Consensus 201 t~--~Pi~v----GFGI--~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 201 TN--KPIIL----GFGI--STSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred cC--CCEEE----ECCc--CCHHHHHHHHhcCCCEEEECH
Confidence 56 99998 7882 224778889999999998643
No 154
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=32.92 E-value=2e+02 Score=30.64 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=24.9
Q ss_pred HHHHhhhhC-CCceeecCC---CCHHHHHHHHc-cCCeEeechH
Q 042063 68 RTLKTHQAN-GTASRTFGA---LDPVQVTMMAK-HLDSIYVSGW 106 (575)
Q Consensus 68 ~lL~~~~~~-~~~l~~~Ga---~D~~sA~~~a~-gf~AIy~SG~ 106 (575)
+.|+.+.+. +-|+++=++ .++-.|+.+.+ |.++|-+||.
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~ 211 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA 211 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC
Confidence 455555444 567777444 44445655554 8999999985
No 155
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=32.14 E-value=1.2e+02 Score=31.38 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=43.7
Q ss_pred CceeeeCCCCCCC-chHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHh
Q 042063 170 KPIIADGDTGFGG-TTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQ 237 (575)
Q Consensus 170 lPIIAD~DtGfGg-~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a 237 (575)
+.|.+..++.|+. +..+.++++.+.++|+..|+|-|-.. +..+.+.-+.+++.|..
T Consensus 126 ~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G------------~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 126 IEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVG------------IATPRQVYELVRTLRGV 182 (262)
T ss_pred CeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCC------------CCCHHHHHHHHHHHHHh
Confidence 7799999999996 57899999999999999999999982 23344555556666543
No 156
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=32.00 E-value=4.7e+02 Score=25.14 Aligned_cols=137 Identities=20% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHhhCCccccCCchHHHHHHHHHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeechHHHhhccCCCCCCCCCCC
Q 042063 45 DVVALRGSLRQSYGSNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVSGWQCSSTHTSTNEPGPDLA 123 (575)
Q Consensus 45 ~v~~~rgs~~~~y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~SG~~vAa~~~~~~~g~PD~~ 123 (575)
+++..-|-=-++.+.........+.++.. +..+-..++++..+....+ |.+.|-++. ........
T Consensus 75 ~~a~~~gad~vh~~~~~~~~~~~~~~~~~----~~~~g~~~~t~~e~~~a~~~gaD~v~~~~----------~~~~~~~~ 140 (212)
T PRK00043 75 DLALAVGADGVHLGQDDLPVADARALLGP----DAIIGLSTHTLEEAAAALAAGADYVGVGP----------IFPTPTKK 140 (212)
T ss_pred HHHHHcCCCEEecCcccCCHHHHHHHcCC----CCEEEEeCCCHHHHHHHhHcCCCEEEECC----------ccCCCCCC
Q ss_pred CCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEe
Q 042063 124 DYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHI 203 (575)
Q Consensus 124 ~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhI 203 (575)
.++...-++.++.+.+ ..-+ +||+|+ ||... ++++.+.++||.||.+
T Consensus 141 ~~~~~~g~~~~~~~~~------------------------~~~~--~~v~a~-----GGI~~--~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 141 DAKAPQGLEGLREIRA------------------------AVGD--IPIVAI-----GGITP--ENAPEVLEAGADGVAV 187 (212)
T ss_pred CCCCCCCHHHHHHHHH------------------------hcCC--CCEEEE-----CCcCH--HHHHHHHHcCCCEEEE
Q ss_pred ccCCCcccccCCCCCCcccCHHHHHHHHHHHH
Q 042063 204 EDQSSVTKKCGHMAGKVLVAISEHINRLVAAR 235 (575)
Q Consensus 204 EDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR 235 (575)
-.-.. ....+.--+.++.+.++.+|
T Consensus 188 gs~i~-------~~~d~~~~~~~l~~~~~~~~ 212 (212)
T PRK00043 188 VSAIT-------GAEDPEAAARALLAAFRAAR 212 (212)
T ss_pred eHHhh-------cCCCHHHHHHHHHHHHhhcC
No 157
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=31.43 E-value=2.2e+02 Score=29.58 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=45.8
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEE
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVA 249 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiA 249 (575)
+|||+=. |. +...+.+++|...++||.|+-+ .. |- .. + .+.++.++-.++...+ .+.+++|=-
T Consensus 70 ~pvi~gv--~~-~t~~~i~~a~~a~~~Gad~v~~--~p--P~----y~-~--~~~~~i~~~f~~v~~~---~~~pi~lYn 132 (289)
T cd00951 70 VPVLAGA--GY-GTATAIAYAQAAEKAGADGILL--LP--PY----LT-E--APQEGLYAHVEAVCKS---TDLGVIVYN 132 (289)
T ss_pred CCEEEec--CC-CHHHHHHHHHHHHHhCCCEEEE--CC--CC----CC-C--CCHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 8999855 54 7788999999999999999988 22 21 11 1 2456666666666543 356777766
Q ss_pred eecc
Q 042063 250 RTDA 253 (575)
Q Consensus 250 RTDA 253 (575)
||..
T Consensus 133 ~~g~ 136 (289)
T cd00951 133 RANA 136 (289)
T ss_pred CCCC
Confidence 6643
No 158
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=31.42 E-value=1.2e+02 Score=33.27 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=31.3
Q ss_pred CceeeeCCCCCCC-----chHHHHHHHHHHHcCce---EEEeccCC
Q 042063 170 KPIIADGDTGFGG-----TTATVKLCKLFVERGAA---GVHIEDQS 207 (575)
Q Consensus 170 lPIIAD~DtGfGg-----~~nv~~lvk~~ieAGaA---GIhIEDQ~ 207 (575)
.|||+|+=.|=|+ ...|.+.+..-+.+|+- ||-||=-+
T Consensus 261 ~~v~VD~SH~ns~k~~~~Q~~V~~~v~~qi~~G~~~I~GvMiES~l 306 (349)
T PRK09261 261 PRIMIDCSHANSGKDHKRQPEVARDVAAQIAAGNKAIIGVMIESHL 306 (349)
T ss_pred CCEEEECCCcccCcchhhhHHHHHHHHHHHHcCCccceEEEEEEec
Confidence 8999999988776 55677778888889987 99998655
No 159
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=31.06 E-value=72 Score=34.01 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=44.0
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCC-CCCCchHHHHHHHHHHHcCc
Q 042063 120 PDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDT-GFGGTTATVKLCKLFVERGA 198 (575)
Q Consensus 120 PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~Dt-GfGg~~nv~~lvk~~ieAGa 198 (575)
|...+++.+++.+.++.+..+ + +..+ .=|+|=.|. +-|+...+.+=.+.|+||||
T Consensus 125 ~gk~l~~~~e~v~rIkAa~~a-------------------~---~~~~--fvi~ARTda~~~~~ld~AI~Ra~AY~eAGA 180 (289)
T COG2513 125 PGKELVSIDEMVDRIKAAVEA-------------------R---RDPD--FVIIARTDALLVEGLDDAIERAQAYVEAGA 180 (289)
T ss_pred CCCCcCCHHHHHHHHHHHHHh-------------------c---cCCC--eEEEeehHHHHhccHHHHHHHHHHHHHcCC
Confidence 667788888776666666532 1 1123 446776665 55677778888999999999
Q ss_pred eEEEeccC
Q 042063 199 AGVHIEDQ 206 (575)
Q Consensus 199 AGIhIEDQ 206 (575)
.+|..|=-
T Consensus 181 D~if~~al 188 (289)
T COG2513 181 DAIFPEAL 188 (289)
T ss_pred cEEccccC
Confidence 99988743
No 160
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=31.00 E-value=1.2e+02 Score=34.10 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=45.4
Q ss_pred eeeeCCC--CCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEE
Q 042063 172 IIADGDT--GFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVA 249 (575)
Q Consensus 172 IIAD~Dt--GfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiA 249 (575)
+|.|-+. +++. ...+.+++.+++|+..|+|-|+.. +.+++.+.++..+......|..++|+.
T Consensus 295 ~it~~~~~~~~~~--~~~~~l~~~l~~Gv~~vqlR~k~~--------------~~~~~~~~a~~l~~~~~~~~~~liind 358 (502)
T PLN02898 295 AVTDSGMNKKWGR--STVDAVRAAIEGGATIVQLREKEA--------------ETREFIEEAKACLAICRSYGVPLLIND 358 (502)
T ss_pred EEECccccccccc--hHHHHHHHHHHcCCCEEEEccCCC--------------CHHHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 4556544 3443 356779999999999999998752 345555555555544444578899998
Q ss_pred eeccc
Q 042063 250 RTDAE 254 (575)
Q Consensus 250 RTDA~ 254 (575)
|.|--
T Consensus 359 ~~~lA 363 (502)
T PLN02898 359 RVDVA 363 (502)
T ss_pred hHHHH
Confidence 87743
No 161
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.00 E-value=2.6e+02 Score=30.73 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=24.8
Q ss_pred HHHHHHHhhhhCCCceeecCCCCHHHHHHHHc-cCCeEeec
Q 042063 65 KLWRTLKTHQANGTASRTFGALDPVQVTMMAK-HLDSIYVS 104 (575)
Q Consensus 65 kL~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-gf~AIy~S 104 (575)
.+.+.+++ .+-|++.-++.++-.|+.+.+ |.++|-++
T Consensus 178 ~i~~~ik~---~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 178 NLKEFIYE---LDVPVIVGGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred HHHHHHHH---CCCCEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 34444443 255666668888888876655 89999764
No 162
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=30.65 E-value=2.7e+02 Score=30.11 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=25.3
Q ss_pred HHHHHhhhhC-CCceeecCC---CCHHHHHHHHc-cCCeEeechHH
Q 042063 67 WRTLKTHQAN-GTASRTFGA---LDPVQVTMMAK-HLDSIYVSGWQ 107 (575)
Q Consensus 67 ~~lL~~~~~~-~~~l~~~Ga---~D~~sA~~~a~-gf~AIy~SG~~ 107 (575)
.+.+++..+. +-|+++=++ .++-.|..+.+ |.++|-+||.+
T Consensus 175 le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~G 220 (352)
T PRK05437 175 LDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAG 220 (352)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCC
Confidence 3445554443 568887444 44444555544 89999999964
No 163
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.33 E-value=1.5e+02 Score=30.72 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=40.1
Q ss_pred CCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEE
Q 042063 169 LKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVL 247 (575)
Q Consensus 169 ~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vI 247 (575)
.+||||= .|-.+...+.++++...++||.||-+== |- . .+ .+.++.++-.++...+.. +.+++|
T Consensus 70 ~~~viag--v~~~~~~~ai~~a~~a~~~Gad~v~~~~----P~----y-~~--~~~~~i~~~~~~v~~a~~--~lpi~i 133 (288)
T cd00954 70 KVTLIAH--VGSLNLKESQELAKHAEELGYDAISAIT----PF----Y-YK--FSFEEIKDYYREIIAAAA--SLPMII 133 (288)
T ss_pred CCeEEec--cCCCCHHHHHHHHHHHHHcCCCEEEEeC----CC----C-CC--CCHHHHHHHHHHHHHhcC--CCCEEE
Confidence 3899983 3334677899999999999999998531 21 0 11 234666666666654330 345554
No 164
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=30.13 E-value=6.8e+02 Score=26.71 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=26.0
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEe
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHI 203 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhI 203 (575)
++ +||++=. .|+|.. .+.++.+.++||.+|.+
T Consensus 177 ~~--vPVivK~-~g~g~s---~~~a~~l~~~Gvd~I~v 208 (326)
T cd02811 177 LS--VPVIVKE-VGFGIS---RETAKRLADAGVKAIDV 208 (326)
T ss_pred cC--CCEEEEe-cCCCCC---HHHHHHHHHcCCCEEEE
Confidence 56 9999864 666633 58889999999999998
No 165
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=30.12 E-value=3.1e+02 Score=28.34 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=21.4
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEec
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
+||++ ||| .+..+.++.+.++||.|+.+-
T Consensus 199 ~pi~v----gfG--I~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 199 KPVLV----GFG--ISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred CCEEE----eCC--CCCHHHHHHHHHcCCCEEEEC
Confidence 79887 555 122467888999999999764
No 166
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.94 E-value=74 Score=35.02 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=41.6
Q ss_pred CHHHHHhHHhhhhhcC-----CCc--eeeecCCcccccccCCCCHHHHHhhHHHHHhcCce
Q 042063 414 DLAECTKFAGGIKSKH-----PEI--MLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFC 467 (575)
Q Consensus 414 ~l~~a~~Fa~~i~~~~-----P~~--~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~ 467 (575)
..++|++.++-++..- |=+ ++.||-.|...|... +++++..|+.-|.+.|+.
T Consensus 285 s~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~p--s~~~i~~F~~~L~~~gi~ 343 (371)
T PRK14461 285 HPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRS--ERERVTTFQRILTDYGIP 343 (371)
T ss_pred CHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCC--CHHHHHHHHHHHHHCCce
Confidence 4688888888887541 111 778999888888876 899999999999999985
No 167
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=29.54 E-value=4e+02 Score=28.75 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=53.7
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCC-cc------------cccCCCCCCcccCHHHHHHHHHHHHH
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSS-VT------------KKCGHMAGKVLVAISEHINRLVAARL 236 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~-~~------------KkCGH~~Gk~Lvp~~E~v~RL~AAR~ 236 (575)
+||.+=.== +..++...++.++++|+.||.+-..+. .+ ..-|-++|++|-|+.-.+ |+..+
T Consensus 162 ~Pv~vKl~P---~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~--v~~l~- 235 (310)
T COG0167 162 VPVFVKLAP---NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRV--VAELY- 235 (310)
T ss_pred CceEEEeCC---CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHH--HHHHH-
Confidence 999988755 778999999999999999998776432 11 123444688888875322 22222
Q ss_pred hhhhcCCceEEEEeecccccCchHHHHH
Q 042063 237 QFDVMGVETVLVARTDAEAATLIQTNVD 264 (575)
Q Consensus 237 a~d~~g~d~vIiARTDA~~a~~l~~aId 264 (575)
...+.++-||+ .++|.+.-|
T Consensus 236 --~~~~~~ipIIG------vGGI~s~~D 255 (310)
T COG0167 236 --KRLGGDIPIIG------VGGIETGED 255 (310)
T ss_pred --HhcCCCCcEEE------ecCcCcHHH
Confidence 22356677764 567766655
No 168
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=29.24 E-value=84 Score=34.39 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=41.7
Q ss_pred HHHHHhHHhhhhhcCCCc--eeeecCCcccccccCCCCHHHHHhhHHHHHhcCcee
Q 042063 415 LAECTKFAGGIKSKHPEI--MLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCW 468 (575)
Q Consensus 415 l~~a~~Fa~~i~~~~P~~--~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~ 468 (575)
+++|++.++-++ .+|.+ +.-||.-|..+|... +.++|..|...|.+-|+.-
T Consensus 270 ~e~A~~L~~ll~-~~~~~VNLIP~Np~~~~~y~r~--~~~~i~~F~~~L~~~gv~~ 322 (349)
T COG0820 270 LEHAKELAKLLK-GIPCKVNLIPYNPVPGSDYERS--SKERIRKFLKILKKAGVLV 322 (349)
T ss_pred HHHHHHHHHHhc-CCCceEEEeecCCCCCCCccCC--cHHHHHHHHHHHHhCCeeE
Confidence 678888877664 44533 778999999999887 8999999999999989854
No 169
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=29.04 E-value=80 Score=33.38 Aligned_cols=40 Identities=13% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCCCCceeeeCCCCCC-CchHHHHHHHHHHHcCceEEEeccCC
Q 042063 166 VDYLKPIIADGDTGFG-GTTATVKLCKLFVERGAAGVHIEDQS 207 (575)
Q Consensus 166 vd~~lPIIAD~DtGfG-g~~nv~~lvk~~ieAGaAGIhIEDQ~ 207 (575)
++ +||.+-+-.|+. +..++.++++.+.++|+.+|.|-=-.
T Consensus 121 ~~--~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt 161 (309)
T PF01207_consen 121 VP--IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRT 161 (309)
T ss_dssp -S--SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-
T ss_pred cc--cceEEecccccccchhHHHHHHHHhhhcccceEEEecCc
Confidence 55 999999999998 57789999999999999999886544
No 170
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=28.85 E-value=1.7e+02 Score=30.38 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=40.2
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEE
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLV 248 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIi 248 (575)
+|||+=. |..+..++.+++|...++||.||-+-= |- .- + .+-++.++-.++.-.+. +.+++|-
T Consensus 74 ~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~----P~----y~-~--~~~~~l~~~f~~va~a~---~lPv~iY 136 (293)
T PRK04147 74 VKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT----PF----YY-P--FSFEEICDYYREIIDSA---DNPMIVY 136 (293)
T ss_pred CCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC----Cc----CC-C--CCHHHHHHHHHHHHHhC---CCCEEEE
Confidence 8999832 334578899999999999999998742 21 10 0 13466666666665433 3455443
No 171
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=28.84 E-value=42 Score=33.81 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=41.5
Q ss_pred HHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCc----eeeeecch
Q 042063 421 FAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGF----CWQFITLA 474 (575)
Q Consensus 421 Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~----~~Q~ItLa 474 (575)
+.+-|.+.+|+....+| +|.-||..- |.|.+|++-+.+.|. +||.+.|.
T Consensus 58 LCkl~N~l~p~~~~~~~-~s~~~f~qm----EnIs~Fi~a~~~ygv~~~d~FqtvDLf 110 (193)
T KOG2046|consen 58 LCKLINKLYPGVVKKIN-ESKMAFVQM----ENISNFIKAAKKYGVPEVDLFQTVDLF 110 (193)
T ss_pred HHHHHHHhCcCcccccc-cccccHHHH----HHHHHHHHHHHhcCCChhhcccccccc
Confidence 77788899997777777 999999887 999999999999898 47777774
No 172
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=28.67 E-value=1.4e+02 Score=32.11 Aligned_cols=211 Identities=12% Similarity=0.103 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchHHHHH
Q 042063 185 ATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQTNVD 264 (575)
Q Consensus 185 nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~~aId 264 (575)
.....-+...+-|+.-|..|.-...+.--+. .+...+-.++++..++..-.+....|. .|++--=- ++.....
T Consensus 34 ~~~~~y~~rA~gG~glii~~~~~v~~~~~~~-~~~~~~~~~~~i~~~~~l~~~vh~~g~--~~~~QL~h--~G~~~~~-- 106 (353)
T cd02930 34 RLAAFYAERARGGVGLIVTGGFAPNEAGKLG-PGGPVLNSPRQAAGHRLITDAVHAEGG--KIALQILH--AGRYAYH-- 106 (353)
T ss_pred HHHHHHHHHhcCCceEEEEeeEEeCCcccCC-CCCcccCCHHHHHHHHHHHHHHHHcCC--EEEeeccC--CCCCCCC--
Confidence 3444445566678888888876533331121 233445667888888887665544333 33333211 1110000
Q ss_pred HHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhH---HHHHH
Q 042063 265 TRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKR---RRLNE 341 (575)
Q Consensus 265 ~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~---~~~~~ 341 (575)
....+.+..... ... ..-+..|.+||.++.+.+. +|.+...+.|++.+.+.- -.+.+
T Consensus 107 ----~~~~~ps~~~~~---~~~----~~p~~mt~~eI~~i~~~f~---------~aA~~a~~aGfDgVeih~ahGyLl~q 166 (353)
T cd02930 107 ----PLCVAPSAIRAP---INP----FTPRELSEEEIEQTIEDFA---------RCAALAREAGYDGVEIMGSEGYLINQ 166 (353)
T ss_pred ----CCCcCCCCCCCC---CCC----CCCCCCCHHHHHHHHHHHH---------HHHHHHHHcCCCEEEEecccchHHHH
Confidence 001111110000 000 0113478889998888755 556555555654443311 13333
Q ss_pred HHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhH
Q 042063 342 WMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKF 421 (575)
Q Consensus 342 ~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~F 421 (575)
|++-.. ..||-| | -|.++ +|. ....+-
T Consensus 167 Flsp~~---------------------------N~RtD~--y--GGsle---nR~-------------------r~~~ei 193 (353)
T cd02930 167 FLAPRT---------------------------NKRTDE--W--GGSFE---NRM-------------------RFPVEI 193 (353)
T ss_pred hcCCcc---------------------------CCCcCc--c--CCCHH---HHh-------------------HHHHHH
Confidence 333110 145555 2 23333 222 233477
Q ss_pred HhhhhhcCC-CceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecc-hhhhh
Q 042063 422 AGGIKSKHP-EIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITL-AGFHA 478 (575)
Q Consensus 422 a~~i~~~~P-~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItL-aG~H~ 478 (575)
.++||+..| +..+.+.+|+ ..+...|++.++...|.+.|.+.|. .+|++ .|+|.
T Consensus 194 v~aIR~~vG~d~~v~iRi~~-~D~~~~g~~~~e~~~i~~~Le~~G~--d~i~vs~g~~e 249 (353)
T cd02930 194 VRAVRAAVGEDFIIIYRLSM-LDLVEGGSTWEEVVALAKALEAAGA--DILNTGIGWHE 249 (353)
T ss_pred HHHHHHHcCCCceEEEEecc-cccCCCCCCHHHHHHHHHHHHHcCC--CEEEeCCCcCC
Confidence 788998885 5688999987 3555667899999999999999995 66665 35664
No 173
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=28.17 E-value=3.7e+02 Score=28.56 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHc-cCCeEeec---hHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcC
Q 042063 88 PVQVTMMAK-HLDSIYVS---GWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERART 163 (575)
Q Consensus 88 ~~sA~~~a~-gf~AIy~S---G~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~ 163 (575)
.-.|+...+ ||++|-+- |+.++.-++......-|.---++..-+..+..|.+ .-|.
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~------------------aIR~-- 216 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVD------------------AVRA-- 216 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHH------------------HHHH--
Q ss_pred CCC--CCCCceeee------CCCCCCCchHHHHHHHHHHHcCceEEEe
Q 042063 164 PCV--DYLKPIIAD------GDTGFGGTTATVKLCKLFVERGAAGVHI 203 (575)
Q Consensus 164 ~~v--d~~lPIIAD------~DtGfGg~~nv~~lvk~~ieAGaAGIhI 203 (575)
.+ + .||.+| .+.|+ +...+.++++.+++.|+.-|++
T Consensus 217 -~vG~d--~~v~vri~~~~~~~~g~-~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 217 -VWPED--KPLFVRISATDWVEGGW-DLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred -HcCCC--ceEEEEEcccccCCCCC-CHHHHHHHHHHHHHcCCCEEEE
No 174
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.74 E-value=4.1e+02 Score=26.98 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=47.4
Q ss_pred CCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccC-----------HHHHHHHHHHHHHhhhhcCCceE
Q 042063 178 TGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVA-----------ISEHINRLVAARLQFDVMGVETV 246 (575)
Q Consensus 178 tGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp-----------~~E~v~RL~AAR~a~d~~g~d~v 246 (575)
.||-+..+..+.++.++++||..|||. .|+ .-..++|..+.- ++...+-|+..|... ..+++
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~--iPf--sdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~---~~pv~ 80 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELG--IPF--SDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN---TIPIV 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC--CCC--CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC---CCCEE
Confidence 588888889999999999999999998 111 111235544332 224444555555332 35666
Q ss_pred EEEeecccccCchHHHHH
Q 042063 247 LVARTDAEAATLIQTNVD 264 (575)
Q Consensus 247 IiARTDA~~a~~l~~aId 264 (575)
++.-..-....+++.-++
T Consensus 81 lm~y~n~~~~~G~~~fi~ 98 (242)
T cd04724 81 LMGYYNPILQYGLERFLR 98 (242)
T ss_pred EEEecCHHHHhCHHHHHH
Confidence 665544333444555555
No 175
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=26.00 E-value=78 Score=35.38 Aligned_cols=53 Identities=34% Similarity=0.399 Sum_probs=39.7
Q ss_pred CCCHHHHHhhHHHHHhc-Cceeeeecchhhhhhh----hhHHHHHHHHHHhhHHHHHH
Q 042063 448 GMTDEEMKDFIPRIAKL-GFCWQFITLAGFHADA----LVVDTFAKDYARRGMLAYVE 500 (575)
Q Consensus 448 G~s~~~i~~F~~~L~~~-G~~~Q~ItLaG~H~~~----~~~~~la~~~~~~GM~aYv~ 500 (575)
||++.+.++|++++++. ||=..-|-|.|=|..- .-..+=|-..+++=+.+||+
T Consensus 57 GmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~ 114 (420)
T TIGR02810 57 GMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVE 114 (420)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999988 9999888899988765 22222344445555777775
No 176
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=25.71 E-value=5.3e+02 Score=27.75 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=37.0
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCc------cc---ccCCCCCCcccCH
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSV------TK---KCGHMAGKVLVAI 224 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~------~K---kCGH~~Gk~Lvp~ 224 (575)
+||++=.---+. ...+..+++.++++||.||.+-+.... ++ ..|-+.|..+-|+
T Consensus 211 ~Pv~vKLsP~~~-~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~ 273 (335)
T TIGR01036 211 VPVLVKIAPDLT-ESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDK 273 (335)
T ss_pred CceEEEeCCCCC-HHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHH
Confidence 899987754443 236888999999999999998775421 11 2344567766665
No 177
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.54 E-value=1.7e+02 Score=31.86 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHh
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQ 237 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a 237 (575)
++..+.++++.++++||.-|+|-|.+. +..+.+..+.+++.+..
T Consensus 195 ~~~~l~~~~~~~~~~Gad~I~l~DT~G------------~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 195 PPSKVAYVAKELYDMGCYEISLGDTIG------------VGTPGTVVPMLEAVMAV 238 (347)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcC------------CcCHHHHHHHHHHHHHh
Confidence 566799999999999999999999982 22345666666666644
No 178
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=25.41 E-value=2.9e+02 Score=31.06 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=36.1
Q ss_pred CCCcee-eeCCCCCC-Cc-h----HHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhh
Q 042063 168 YLKPII-ADGDTGFG-GT-T----ATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDV 240 (575)
Q Consensus 168 ~~lPII-AD~DtGfG-g~-~----nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~ 240 (575)
|.+||| +..++||+ +. . ......+....-|+.+++++.... .+..+-++.|...+..
T Consensus 250 ~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~----------------~av~~a~~~A~~~Ar~ 313 (433)
T PLN02374 250 WKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV----------------LKVREVAKEAIERARR 313 (433)
T ss_pred hCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCH----------------HHHHHHHHHHHHHHHH
Confidence 347766 45577665 21 1 112344555556888888765431 1222222222221122
Q ss_pred cCCceEEEEeeccc
Q 042063 241 MGVETVLVARTDAE 254 (575)
Q Consensus 241 ~g~d~vIiARTDA~ 254 (575)
.+-+.||.+.|=-.
T Consensus 314 g~gP~LIe~~tyR~ 327 (433)
T PLN02374 314 GEGPTLVECETYRF 327 (433)
T ss_pred cCCCEEEEEEEEec
Confidence 35689999988554
No 179
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.77 E-value=2.8e+02 Score=28.73 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=44.3
Q ss_pred CceeeeCCCCCC-CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhh
Q 042063 170 KPIIADGDTGFG-GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQF 238 (575)
Q Consensus 170 lPIIAD~DtGfG-g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~ 238 (575)
+-|.+...+-++ ++..+.++++.+.++|+..|.|-|... +..+++..+.+++.|...
T Consensus 123 ~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G------------~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 123 YEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFG------------SMYPEDIKRIISLLRSNL 180 (266)
T ss_pred CeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCC------------CCCHHHHHHHHHHHHHhc
Confidence 457777777777 467899999999999999999999982 345567777777777543
No 180
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.13 E-value=1.3e+02 Score=32.89 Aligned_cols=51 Identities=10% Similarity=0.214 Sum_probs=39.6
Q ss_pred CHHHHHhHHhhhhhcCCCc--eeeecCCcccccccCCCCHHHHHhhHHHHHhcCce
Q 042063 414 DLAECTKFAGGIKSKHPEI--MLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFC 467 (575)
Q Consensus 414 ~l~~a~~Fa~~i~~~~P~~--~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~ 467 (575)
+.++|+++++-++.. |.+ .+.||--|..+|.. -|++.++.|...|.+.|+.
T Consensus 264 ~~e~a~~L~~ll~~~-~~~VNLIp~Np~~~~~~~~--~s~~~~~~F~~~L~~~gi~ 316 (345)
T PRK14466 264 SLKHAKELVKLLRGI-DCRVNLIRFHAIPGVDLEG--SDMARMEAFRDYLTSHGVF 316 (345)
T ss_pred CHHHHHHHHHHHcCC-CceEEEEecCCCCCCCCcC--CCHHHHHHHHHHHHHCCCc
Confidence 457888888888643 443 78899777666665 4999999999999999973
No 181
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=24.07 E-value=3e+02 Score=29.27 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCC------CceeeeCCCCCCCchHHHHH
Q 042063 116 NEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYL------KPIIADGDTGFGGTTATVKL 189 (575)
Q Consensus 116 ~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~------lPIIAD~DtGfGg~~nv~~l 189 (575)
|.+.|-..-....+.++.+.+|.++ ..... +||++=.- -+-...++.++
T Consensus 167 N~scP~~~g~~~~~~~~~~~~iv~a------------------------v~~~~~~~~~~~Pv~vKl~-~~~~~~~~~~i 221 (327)
T cd04738 167 NVSSPNTPGLRDLQGKEALRELLTA------------------------VKEERNKLGKKVPLLVKIA-PDLSDEELEDI 221 (327)
T ss_pred ECCCCCCCccccccCHHHHHHHHHH------------------------HHHHHhhcccCCCeEEEeC-CCCCHHHHHHH
Q ss_pred HHHHHHcCceEEEeccCCCcccc---------cCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEeecccccCchH
Q 042063 190 CKLFVERGAAGVHIEDQSSVTKK---------CGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQ 260 (575)
Q Consensus 190 vk~~ieAGaAGIhIEDQ~~~~Kk---------CGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiARTDA~~a~~l~ 260 (575)
++.++++||.||.+-.-...... .|=+.|+.+.| .-++.++..+...+.++-||+=-+-.......
T Consensus 222 a~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~-----~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~ 296 (327)
T cd04738 222 ADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKE-----RSTEVLRELYKLTGGKIPIIGVGGISSGEDAY 296 (327)
T ss_pred HHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhH-----HHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Q ss_pred HHHHHHHHhhhhccCCCCCCcchHHHHHHHH
Q 042063 261 TNVDTRDHQFILGVTNPNLRGKALASILAEA 291 (575)
Q Consensus 261 ~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~ 291 (575)
+.+. +|||++.++
T Consensus 297 e~l~------------------aGAd~V~vg 309 (327)
T cd04738 297 EKIR------------------AGASLVQLY 309 (327)
T ss_pred HHHH------------------cCCCHHhcc
No 182
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=24.05 E-value=3.4e+02 Score=28.55 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=23.5
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccC
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQ 206 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ 206 (575)
+||++=+=+|-. .+.+++.+++|+++||+-=.
T Consensus 201 iPlv~hGgSGi~-----~e~i~~~i~~Gi~kiNv~T~ 232 (282)
T TIGR01859 201 IPLVLHGASGIP-----EEQIKKAIKLGIAKINIDTD 232 (282)
T ss_pred CCEEEECCCCCC-----HHHHHHHHHcCCCEEEECcH
Confidence 999875444422 46678889999999998544
No 183
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=24.04 E-value=18 Score=30.47 Aligned_cols=16 Identities=44% Similarity=0.891 Sum_probs=12.9
Q ss_pred ccCCCCCCCCcccccc
Q 042063 371 WDWDLPRTREGFYRFK 386 (575)
Q Consensus 371 ~dwd~~Rt~eG~y~~~ 386 (575)
=||+..||.+|-||+-
T Consensus 5 ~dW~Vsrt~dGdYrL~ 20 (71)
T PF11619_consen 5 ADWEVSRTLDGDYRLV 20 (71)
T ss_dssp -S-EEEEETTTCEEEE
T ss_pred ccceeeeccCCceEEE
Confidence 3899999999999964
No 184
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=23.47 E-value=3.4e+02 Score=28.83 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=23.3
Q ss_pred ccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhh
Q 042063 443 NWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHA 478 (575)
Q Consensus 443 nW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~ 478 (575)
.+++.|++.+++..+...+.+.. -+.+.|+|.
T Consensus 145 ~~sKfG~~~~~~~~~~~~~~~~~----~l~l~Glh~ 176 (382)
T cd06839 145 GPSQFGIDVEELPAVLARIAALP----NLRFVGLHI 176 (382)
T ss_pred CCCCcCCCHHHHHHHHHHHHhCC----CCcEEEEEE
Confidence 46888999999999988887742 144566665
No 185
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=23.47 E-value=1.1e+02 Score=34.44 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=37.6
Q ss_pred CCCHHHHHhhHHHHHhc-CceeeeecchhhhhhhhhH----HHHHHHHHHhhHHHHHH
Q 042063 448 GMTDEEMKDFIPRIAKL-GFCWQFITLAGFHADALVV----DTFAKDYARRGMLAYVE 500 (575)
Q Consensus 448 G~s~~~i~~F~~~L~~~-G~~~Q~ItLaG~H~~~~~~----~~la~~~~~~GM~aYv~ 500 (575)
||++.+.++|++++++. ||=..-|-|.|=|..-..- .+=|-..+++=+.+||+
T Consensus 61 GmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~ 118 (426)
T PRK15458 61 GMTPADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVA 118 (426)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999988 9998888889988755111 11122234444667764
No 186
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.13 E-value=2.7e+02 Score=29.45 Aligned_cols=64 Identities=9% Similarity=0.122 Sum_probs=39.9
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEE
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLV 248 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIi 248 (575)
+|||+=. |--+...+.++++...++||.||-+-=--. . + .+.++.++-.++...+.+ +.+++|=
T Consensus 78 vpvi~Gv--~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y-~--------~--~~~~~l~~yf~~va~a~~--~lPv~iY 141 (309)
T cd00952 78 VPVFVGA--TTLNTRDTIARTRALLDLGADGTMLGRPMW-L--------P--LDVDTAVQFYRDVAEAVP--EMAIAIY 141 (309)
T ss_pred CCEEEEe--ccCCHHHHHHHHHHHHHhCCCEEEECCCcC-C--------C--CCHHHHHHHHHHHHHhCC--CCcEEEE
Confidence 8999532 222567899999999999999998753210 0 0 134666666666654331 2455554
No 187
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=22.81 E-value=2.2e+02 Score=25.45 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHhhh-cCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecC-Cccccc
Q 042063 389 VDAAIIRGWA-FAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNL-SPSFNW 444 (575)
Q Consensus 389 ~~~ai~R~~a-~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~-SPSFnW 444 (575)
.+..+++..+ ..| |+|=+-+-+++...++++++.|++.+|+..++... .|+++.
T Consensus 27 ~~~~~~~~~~~~~p--div~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p 82 (127)
T cd02068 27 ADDIVEDIKELLKP--DVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFP 82 (127)
T ss_pred HHHHHHHHHHhcCC--CEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCH
Confidence 4556666555 554 99999999999999999999999999988766654 566654
No 188
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=22.81 E-value=1.7e+02 Score=34.08 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCcCcEEeeccCCCCHHHHHhHHhhhhhcCC-CceeeecC
Q 042063 400 APHADLIWMETASPDLAECTKFAGGIKSKHP-EIMLAYNL 438 (575)
Q Consensus 400 apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P-~~~laYN~ 438 (575)
.+-+|++++|| -|++.+|+..++.+++..+ -.|+.+.+
T Consensus 136 ~~gvD~l~~ET-~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~ 174 (612)
T PRK08645 136 EEGVDGLLLET-FYDLEELLLALEAAREKTDLPIIAQVAF 174 (612)
T ss_pred hcCCCEEEEEc-cCCHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 55699999999 8999999999999986642 22444444
No 189
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=22.64 E-value=2.9e+02 Score=28.89 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=59.4
Q ss_pred HccCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceee
Q 042063 95 AKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIA 174 (575)
Q Consensus 95 a~gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIA 174 (575)
..|.++|++.|.. .+ ...++.+|-...++...++ ++-.+||++
T Consensus 32 ~~Gv~gi~v~Gst--------GE----~~~Ls~~Er~~l~~~~~~~-------------------------~~g~~pvi~ 74 (294)
T TIGR02313 32 EGGSHAISVGGTS--------GE----PGSLTLEERKQAIENAIDQ-------------------------IAGRIPFAP 74 (294)
T ss_pred HcCCCEEEECccC--------cc----cccCCHHHHHHHHHHHHHH-------------------------hCCCCcEEE
Confidence 3489999988821 22 2235666666666655421 122389984
Q ss_pred eCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEE
Q 042063 175 DGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLV 248 (575)
Q Consensus 175 D~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIi 248 (575)
-.|.-+...+.+++|...++||.||-+-=-. -+ + .+-++.++-.++...+.+ +.+++|=
T Consensus 75 --gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~----y~-----~--~~~~~l~~~f~~ia~a~~--~lpv~iY 133 (294)
T TIGR02313 75 --GTGALNHDETLELTKFAEEAGADAAMVIVPY----YN-----K--PNQEALYDHFAEVADAVP--DFPIIIY 133 (294)
T ss_pred --ECCcchHHHHHHHHHHHHHcCCCEEEEcCcc----CC-----C--CCHHHHHHHHHHHHHhcc--CCCEEEE
Confidence 2232245678899999999999999875322 11 0 133566666666654431 3455443
No 190
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=22.62 E-value=5.1e+02 Score=29.45 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhh
Q 042063 182 GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQF 238 (575)
Q Consensus 182 g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~ 238 (575)
++..+.++++.++++||..|+|-|-.. +..+.+.-+.+++.|...
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~G------------~l~P~~v~~Lv~~lk~~~ 195 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMAG------------LLTPKRAYELVKALKKKF 195 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccC------------CcCHHHHHHHHHHHHHhc
Confidence 356788999999999999999999982 334556666667776543
No 191
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=22.13 E-value=6.7e+02 Score=26.48 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=51.4
Q ss_pred CCHHHHHhHHhhhhhcC-CCceeeecCCcccc--------------cccCC------CCHHHHHhhHHHHHhcCceeeee
Q 042063 413 PDLAECTKFAGGIKSKH-PEIMLAYNLSPSFN--------------WDASG------MTDEEMKDFIPRIAKLGFCWQFI 471 (575)
Q Consensus 413 P~l~~a~~Fa~~i~~~~-P~~~laYN~SPSFn--------------W~~~G------~s~~~i~~F~~~L~~~G~~~Q~I 471 (575)
.++.+--..|..||+++ |+..+-|+..-.+| +...| +|.+++..-..++.+.|+.--+|
T Consensus 15 ~~~~~l~~~A~~vr~~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l 94 (340)
T TIGR03699 15 ADLLALGALADEVRRRRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILL 94 (340)
T ss_pred CcHHHHHHHHHHHHHHhcCCCeEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 57888889999999887 67765432111111 21111 78999999999999999754444
Q ss_pred cchhhhhh--hhhHHHHHHHHHHhh
Q 042063 472 TLAGFHAD--ALVVDTFAKDYARRG 494 (575)
Q Consensus 472 tLaG~H~~--~~~~~~la~~~~~~G 494 (575)
+ .|.|.. .-...++.+..++++
T Consensus 95 ~-gG~~p~~~~~~~~~li~~Ik~~~ 118 (340)
T TIGR03699 95 Q-GGVNPDLGLDYYEDLFRAIKARF 118 (340)
T ss_pred e-cCCCCCCCHHHHHHHHHHHHHHC
Confidence 3 555542 112346777787765
No 192
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.12 E-value=89 Score=37.37 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=48.3
Q ss_pred EEeeccCCCCHHHHHhHHhhhh--hcCCCceeeecCCccccccc--CCCCHHHHHhhHHHHHhc
Q 042063 405 LIWMETASPDLAECTKFAGGIK--SKHPEIMLAYNLSPSFNWDA--SGMTDEEMKDFIPRIAKL 464 (575)
Q Consensus 405 l~W~Et~~P~l~~a~~Fa~~i~--~~~P~~~laYN~SPSFnW~~--~G~s~~~i~~F~~~L~~~ 464 (575)
.|-+||-.|..++|+.|.-.|- ..-|.-+=-|.++|-==|.+ .|++.++|-.+...++|-
T Consensus 24 ~i~lE~~~p~~~~a~~fl~~~aEp~~rp~~iHeY~lT~~sl~~A~s~g~~~~~ii~~L~~~sk~ 87 (732)
T TIGR00603 24 HIFLESFSPLYKQAQDFLVAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETEDIIEVLGRLSKT 87 (732)
T ss_pred eEEEEeCCccHHHHHHHHHHhcccccChhheEEEeccHHHHHHHHHcCCCHHHHHHHHHHHhCC
Confidence 5789999999999999988886 46788899999999555655 688877777766666653
No 193
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.08 E-value=4.1e+02 Score=27.72 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=43.0
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEE
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVA 249 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiA 249 (575)
+|||+=. |. +...+.++++...++||.||-+---- .. + .+-++.++-.++...+. +.+++|--
T Consensus 75 ~pvi~gv--~~-~t~~ai~~a~~a~~~Gadav~~~pP~-y~--------~--~s~~~i~~~f~~v~~a~---~~pvilYn 137 (296)
T TIGR03249 75 VPVYTGV--GG-NTSDAIEIARLAEKAGADGYLLLPPY-LI--------N--GEQEGLYAHVEAVCEST---DLGVIVYQ 137 (296)
T ss_pred CcEEEec--Cc-cHHHHHHHHHHHHHhCCCEEEECCCC-CC--------C--CCHHHHHHHHHHHHhcc---CCCEEEEe
Confidence 8999875 53 57789999999999999999883322 10 0 12355555555554333 45776665
Q ss_pred eec
Q 042063 250 RTD 252 (575)
Q Consensus 250 RTD 252 (575)
||-
T Consensus 138 ~~g 140 (296)
T TIGR03249 138 RDN 140 (296)
T ss_pred CCC
Confidence 653
No 194
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=21.99 E-value=5.6e+02 Score=27.05 Aligned_cols=79 Identities=20% Similarity=0.191 Sum_probs=50.1
Q ss_pred CceeeeCCCCCC--CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEE
Q 042063 170 KPIIADGDTGFG--GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVL 247 (575)
Q Consensus 170 lPIIAD~DtGfG--g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vI 247 (575)
+|+.+ =.|++ .+..+.+.++++.++|..+|-| |+||..... --+++-+++|+++|.+. |+|+.|
T Consensus 127 v~~~~--~~~~~~~~~~~~~~~a~~~~~~Gf~~~Ki--------k~g~~~~~~-~~~~~d~~~v~~ir~~~---g~~~~l 192 (357)
T cd03316 127 VRVYA--SGGGYDDSPEELAEEAKRAVAEGFTAVKL--------KVGGPDSGG-EDLREDLARVRAVREAV---GPDVDL 192 (357)
T ss_pred eeeEE--ecCCCCCCHHHHHHHHHHHHHcCCCEEEE--------cCCCCCcch-HHHHHHHHHHHHHHHhh---CCCCEE
Confidence 55543 23444 3677888899999999999877 233311000 11566788889988554 778755
Q ss_pred EEeecccccCchHHHHH
Q 042063 248 VARTDAEAATLIQTNVD 264 (575)
Q Consensus 248 iARTDA~~a~~l~~aId 264 (575)
. .|+..+-.++++++
T Consensus 193 ~--vDaN~~~~~~~a~~ 207 (357)
T cd03316 193 M--VDANGRWDLAEAIR 207 (357)
T ss_pred E--EECCCCCCHHHHHH
Confidence 3 38776555676665
No 195
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=21.62 E-value=1.7e+02 Score=29.89 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=80.0
Q ss_pred CCchHHHHHHHHHHHhhhhCCCceee---cCCCCHHHHHHHH----c-cCCeEeechHHHhhccCCCCCCCCCCCCCCcC
Q 042063 57 YGSNEMAKKLWRTLKTHQANGTASRT---FGALDPVQVTMMA----K-HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYD 128 (575)
Q Consensus 57 y~~~~~A~kL~~lL~~~~~~~~~l~~---~Ga~D~~sA~~~a----~-gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~ 128 (575)
++.+.+....+...+.. ..|++. .|-.|+..+...+ + |..+|.+=.-....-.+ .. .-..++|.+
T Consensus 52 ~~~~e~~~~~~~I~~~~---~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g--~~--~~~~~~~~e 124 (243)
T cd00377 52 LTLDEVLAAVRRIARAV---DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCG--HH--GGKVLVPIE 124 (243)
T ss_pred CCHHHHHHHHHHHHhhc---cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCcccc--CC--CCCeecCHH
Confidence 34455666666655543 345554 3444765543333 2 67777774321110000 11 123456777
Q ss_pred cHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCC-CCCCCceeeeCCCCC---CCchHHHHHHHHHHHcCceEEEec
Q 042063 129 TVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPC-VDYLKPIIADGDTGF---GGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 129 tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~-vd~~lPIIAD~DtGf---Gg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
+....++.+..+ + .. .+ ++|+|=.|+=. .+...+.+-.+.|.++||.+|-++
T Consensus 125 e~~~ki~aa~~a-------------------~---~~~~~--~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~ 180 (243)
T cd00377 125 EFVAKIKAARDA-------------------R---DDLPD--FVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE 180 (243)
T ss_pred HHHHHHHHHHHH-------------------H---hccCC--eEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 666666655432 0 11 35 89999877632 246778888999999999999996
Q ss_pred cCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 042063 205 DQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVAR 250 (575)
Q Consensus 205 DQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiAR 250 (575)
+++ ..+++.+|..+ .+.+++++..
T Consensus 181 ----~~~------------~~~~~~~~~~~------~~~Pl~~~~~ 204 (243)
T cd00377 181 ----GLK------------DPEEIRAFAEA------PDVPLNVNMT 204 (243)
T ss_pred ----CCC------------CHHHHHHHHhc------CCCCEEEEec
Confidence 121 24677676554 2457777743
No 196
>PLN02321 2-isopropylmalate synthase
Probab=21.27 E-value=3.2e+02 Score=32.25 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=42.1
Q ss_pred eeeeCCCCCC-CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHh
Q 042063 172 IIADGDTGFG-GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQ 237 (575)
Q Consensus 172 IIAD~DtGfG-g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a 237 (575)
+..++++++- ++.-+.++++.++++||.-|+|-|.+. ...+.++.+.|+..+..
T Consensus 227 v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG------------~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 227 VEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVG------------YTLPSEFGQLIADIKAN 281 (632)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHcCCCEEEeccccc------------CCCHHHHHHHHHHHHHh
Confidence 7788877755 578899999999999999999999983 22345677777777643
No 197
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.23 E-value=3.6e+02 Score=27.64 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.0
Q ss_pred cccccCCCCHHHHHhhHHHHHhcCceeeeecchhh
Q 042063 442 FNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGF 476 (575)
Q Consensus 442 FnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~ 476 (575)
|+|+..-|.+ .+.|+.+|-++|+..-++.-+.+
T Consensus 58 ~~~d~~~Fpd--p~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 58 FDWDAGKFPN--PKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred eecChhhCCC--HHHHHHHHHHCCCEEEEEeChhH
Confidence 4898876876 88999999999999999998887
No 198
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=21.21 E-value=2.4e+02 Score=31.05 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=31.0
Q ss_pred CceeeeCCCCCCCc-----hHHHHHHHHHHHcCc---eEEEeccCC
Q 042063 170 KPIIADGDTGFGGT-----TATVKLCKLFVERGA---AGVHIEDQS 207 (575)
Q Consensus 170 lPIIAD~DtGfGg~-----~nv~~lvk~~ieAGa---AGIhIEDQ~ 207 (575)
.|||+|+=.|=++- ..|.+.+..-+.+|. .||-||=-+
T Consensus 262 ~~vmVD~SH~Ns~K~~~~Q~~V~~~v~~qi~~G~~~I~GvMiES~l 307 (353)
T PRK12755 262 PRLMIDCSHANSGKDYRRQPAVAEDVVAQIAAGNRSIIGVMIESHL 307 (353)
T ss_pred CcEEecCCccccccchhhhHHHHHHHHHHHHcCCCceEEEEEEEec
Confidence 89999998887754 457788888888998 999888654
No 199
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.18 E-value=4.5e+02 Score=26.79 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=59.9
Q ss_pred ccCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeee
Q 042063 96 KHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIAD 175 (575)
Q Consensus 96 ~gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD 175 (575)
.|.++|++.|. + .++. .++.+|-...++...++ +...+||++=
T Consensus 30 ~Gv~gi~~~Gs---t-----GE~~----~ls~~Er~~l~~~~~~~-------------------------~~~~~~vi~g 72 (281)
T cd00408 30 AGVDGLVVLGT---T-----GEAP----TLTDEERKEVIEAVVEA-------------------------VAGRVPVIAG 72 (281)
T ss_pred cCCCEEEECCC---C-----cccc----cCCHHHHHHHHHHHHHH-------------------------hCCCCeEEEe
Confidence 38999998871 1 2222 34556666666555431 1123899964
Q ss_pred CCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEE
Q 042063 176 GDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVL 247 (575)
Q Consensus 176 ~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vI 247 (575)
. |..+...+.++++...++||.||-+-=-. . .+ .+.++.++-.++...+. +.+++|
T Consensus 73 v--~~~~~~~~i~~a~~a~~~Gad~v~v~pP~--------y-~~--~~~~~~~~~~~~ia~~~---~~pi~i 128 (281)
T cd00408 73 V--GANSTREAIELARHAEEAGADGVLVVPPY--------Y-NK--PSQEGIVAHFKAVADAS---DLPVIL 128 (281)
T ss_pred c--CCccHHHHHHHHHHHHHcCCCEEEECCCc--------C-CC--CCHHHHHHHHHHHHhcC---CCCEEE
Confidence 3 33356679999999999999999993221 1 11 34567777777665442 345554
No 200
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=21.10 E-value=1.8e+02 Score=29.57 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=28.9
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEec
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
+||++=.-.|+- .++.++++.++++|+.+||+.
T Consensus 140 ~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~ 172 (233)
T cd02911 140 VPVSVKIRAGVD--VDDEELARLIEKAGADIIHVD 172 (233)
T ss_pred CCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEEC
Confidence 899998888874 567899999999999999994
No 201
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=21.09 E-value=2.1e+02 Score=31.92 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=47.5
Q ss_pred CCCCceeeeCCCCCC-CchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHh
Q 042063 167 DYLKPIIADGDTGFG-GTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQ 237 (575)
Q Consensus 167 d~~lPIIAD~DtGfG-g~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a 237 (575)
++.+++..++++.+. ++..+.++++.+++.||.-|+|=|.+. ...+.++-+.+++.+..
T Consensus 128 ~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG------------~~~P~~~~~~i~~l~~~ 187 (409)
T COG0119 128 DHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVG------------VATPNEVADIIEALKAN 187 (409)
T ss_pred HcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcC------------ccCHHHHHHHHHHHHHh
Confidence 445899999999998 578899999999999999999999983 12345777777777643
No 202
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.06 E-value=2.7e+02 Score=29.58 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=40.9
Q ss_pred HHhHHhhhhhcCC-CceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeec
Q 042063 418 CTKFAGGIKSKHP-EIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFIT 472 (575)
Q Consensus 418 a~~Fa~~i~~~~P-~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~It 472 (575)
..+-.++||+..+ +..+.+-+|| -.+...|++.++...|.+.|.+.|+-|--|+
T Consensus 202 ~~EiI~aIR~avG~d~~v~vris~-~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 202 LLEIYDAIRAAVGPGFPVGIKLNS-ADFQRGGFTEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEcH-HHcCCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 3466778888885 5688888887 3455668999999999999999996443333
No 203
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.83 E-value=1.7e+02 Score=31.97 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=40.9
Q ss_pred CHHHHHhHHhhhhhcCCCc--eeeecCCcccccccCCCCHHHHHhhHHHHHhcCcee
Q 042063 414 DLAECTKFAGGIKSKHPEI--MLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCW 468 (575)
Q Consensus 414 ~l~~a~~Fa~~i~~~~P~~--~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~ 468 (575)
+.++|+++++-++. +|-+ .|.||--|..+|.. .|+++++.|..-|.+.|+.-
T Consensus 277 s~e~a~~La~llk~-l~~~VnLIPyn~~~~~~~~~--ps~e~i~~f~~~l~~~gi~v 330 (356)
T PRK14462 277 DLKSAKKLVKLLNG-IKAKVNLILFNPHEGSKFER--PSLEDMIKFQDYLNSKGLLC 330 (356)
T ss_pred CHHHHHHHHHHHhh-cCcEEEEEeCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCcE
Confidence 46888888887764 3544 88999888888865 59999999999999888643
No 204
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=20.79 E-value=1e+03 Score=25.29 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=76.8
Q ss_pred HHHHHHhhhhCCCceeecCCCCHHHHHHHHc-----cCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHH
Q 042063 66 LWRTLKTHQANGTASRTFGALDPVQVTMMAK-----HLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFA 140 (575)
Q Consensus 66 L~~lL~~~~~~~~~l~~~Ga~D~~sA~~~a~-----gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~a 140 (575)
+.++|+...+++-.+-.+|++|.-+++.+.+ +-+.|--.+-.. . ...+++.+...+..+.+
T Consensus 6 ~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~----------~---~~~~~~~~~~~~~~~a~- 71 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGT----------F---KHIALEEIYALCSAYST- 71 (286)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcch----------h---hhCCHHHHHHHHHHHHH-
Confidence 5667777777888899999999988765433 456665322110 0 11234444444444431
Q ss_pred hhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCc
Q 042063 141 QQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKV 220 (575)
Q Consensus 141 q~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~ 220 (575)
... +||.+=.|+|.- ++.+++.+++|-..|-|.=..
T Consensus 72 ------------------------~~~--VPValHLDHg~~-----~e~i~~ai~~GFtSVM~DgS~------------- 107 (286)
T PRK12738 72 ------------------------TYN--MPLALHLDHHES-----LDDIRRKVHAGVRSAMIDGSH------------- 107 (286)
T ss_pred ------------------------HCC--CCEEEECCCCCC-----HHHHHHHHHcCCCeEeecCCC-------------
Confidence 123 999999999963 677888999999988885221
Q ss_pred ccCHHHHHHHHHHHHHhhhhcCC
Q 042063 221 LVAISEHINRLVAARLQFDVMGV 243 (575)
Q Consensus 221 Lvp~~E~v~RL~AAR~a~d~~g~ 243 (575)
.|.+|=+++-+.+..-+...|.
T Consensus 108 -lp~eeNi~~T~evv~~Ah~~gv 129 (286)
T PRK12738 108 -FPFAENVKLVKSVVDFCHSQDC 129 (286)
T ss_pred -CCHHHHHHHHHHHHHHHHHcCC
Confidence 4778888777766654444443
No 205
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=20.78 E-value=2.3e+02 Score=27.67 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=53.1
Q ss_pred CCccccccCcHHHHHHHhhhcCCcCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhH
Q 042063 379 REGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFI 458 (575)
Q Consensus 379 ~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~ 458 (575)
++-+..+=||+..|+++...+.|..--|=+|+.+ ++|+.+.++ .-++..+.=| ||+++++..+
T Consensus 56 ~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~--~ee~~ea~~----~g~d~I~lD~-----------~~~~~~~~~v 118 (169)
T PF01729_consen 56 KDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVEN--LEEAEEALE----AGADIIMLDN-----------MSPEDLKEAV 118 (169)
T ss_dssp -HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESS--HHHHHHHHH----TT-SEEEEES------------CHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCC--HHHHHHHHH----hCCCEEEecC-----------cCHHHHHHHH
Confidence 4445555688888888888888887767777775 677776544 1244333333 4667888888
Q ss_pred HHHHhcCceeeeecchhhhhhh
Q 042063 459 PRIAKLGFCWQFITLAGFHADA 480 (575)
Q Consensus 459 ~~L~~~G~~~Q~ItLaG~H~~~ 480 (575)
..|...+-..++.--.|+-..+
T Consensus 119 ~~l~~~~~~v~ie~SGGI~~~n 140 (169)
T PF01729_consen 119 EELRELNPRVKIEASGGITLEN 140 (169)
T ss_dssp HHHHHHTTTSEEEEESSSSTTT
T ss_pred HHHhhcCCcEEEEEECCCCHHH
Confidence 8776666655555445555444
No 206
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=20.60 E-value=21 Score=35.19 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=35.1
Q ss_pred CCCCC-CCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHc
Q 042063 118 PGPDL-ADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVER 196 (575)
Q Consensus 118 g~PD~-~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieA 196 (575)
..||. +.+|- -+|..+++|. ..++ +|||| ||.....+-|+...++
T Consensus 116 ~~PD~vEilPg-~~p~vi~~i~-------------------------~~~~--~PiIA------GGLI~~~e~v~~al~a 161 (175)
T PF04309_consen 116 SKPDAVEILPG-VMPKVIKKIR-------------------------EETN--IPIIA------GGLIRTKEDVEEALKA 161 (175)
T ss_dssp HT-SEEEEESC-CHHHHHCCCC-------------------------CCCS--S-EEE------ESS--SHHHHHHHCCT
T ss_pred cCCCEEEEchH-HHHHHHHHHH-------------------------HhcC--CCEEe------ecccCCHHHHHHHHHc
Confidence 45776 66666 6666665552 2355 99999 6777778889999999
Q ss_pred CceEEEec
Q 042063 197 GAAGVHIE 204 (575)
Q Consensus 197 GaAGIhIE 204 (575)
||.||.--
T Consensus 162 Ga~aVSTS 169 (175)
T PF04309_consen 162 GADAVSTS 169 (175)
T ss_dssp TCEEEEE-
T ss_pred CCEEEEcC
Confidence 99999643
No 207
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=20.53 E-value=7e+02 Score=25.66 Aligned_cols=124 Identities=14% Similarity=0.062 Sum_probs=70.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCC
Q 042063 288 LAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLK 367 (575)
Q Consensus 288 i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~ 367 (575)
...+...|.+.+||.+..+++.++..+.-.++-..--.+.| | +.....+...+++.
T Consensus 128 a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~v~~L~~L~~gG----------------------R--is~~~~~~g~lL~i 183 (275)
T TIGR00762 128 AAKLAEEGKSLEEILAKLEELRERTKLYFVVDTLEYLVKGG----------------------R--ISKAAALIGSLLNI 183 (275)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECcHHHHHhcC----------------------C--ccHHHHHHHHhhcc
Confidence 33344679999999999999999888775554332222223 2 22333334444444
Q ss_pred CccccCCCCCCCCcccc-------ccCcHHHHHHHhhhcCCc---CcEEeeccCCCCHHHHHhHHhhhhhcCCCc-eeee
Q 042063 368 NLFWDWDLPRTREGFYR-------FKGSVDAAIIRGWAFAPH---ADLIWMETASPDLAECTKFAGGIKSKHPEI-MLAY 436 (575)
Q Consensus 368 ~~~~dwd~~Rt~eG~y~-------~~gg~~~ai~R~~a~apy---aDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~-~laY 436 (575)
.+-..++ +|... .+.+++..++....+.+- -.+...-+. +.++|+++.+.+++.+|.+ ...+
T Consensus 184 kPIi~~~-----~G~i~~~~k~Rg~kka~~~l~~~~~~~~~~~~~~~i~i~~~~--~~e~~~~l~~~l~~~~~~~~~~~~ 256 (275)
T TIGR00762 184 KPILTVD-----DGKLVPIEKVRGRKKAIKKLVELVKEDIKDGKPKRVAIIHAD--AEEEAEELKEKLKEKFPVKEILIS 256 (275)
T ss_pred eeEEEEe-----CCEEEEeeccccHHHHHHHHHHHHHHhhccCCCcEEEEEeCC--CHHHHHHHHHHHHhHCCCCcEEEe
Confidence 3222222 34432 234444445444444321 234444444 5689999999999999975 4566
Q ss_pred cCCccc
Q 042063 437 NLSPSF 442 (575)
Q Consensus 437 N~SPSF 442 (575)
.++|.+
T Consensus 257 ~~~~~i 262 (275)
T TIGR00762 257 EIGPVI 262 (275)
T ss_pred ecCCEE
Confidence 777753
No 208
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.49 E-value=4.7e+02 Score=27.46 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=43.9
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEE
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVA 249 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiA 249 (575)
+|||+=. |. +...+.+++|...++||.||-+ .+ |- .. + .+.++.++-.++...+. +.+++|--
T Consensus 77 ~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~---~p-P~----y~-~--~~~~~i~~~f~~va~~~---~lpi~lYn 139 (303)
T PRK03620 77 VPVIAGA--GG-GTAQAIEYAQAAERAGADGILL---LP-PY----LT-E--APQEGLAAHVEAVCKST---DLGVIVYN 139 (303)
T ss_pred CcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEE---CC-CC----CC-C--CCHHHHHHHHHHHHHhC---CCCEEEEc
Confidence 8999855 43 6778999999999999999988 21 21 11 1 13456666666665433 46776665
Q ss_pred eec
Q 042063 250 RTD 252 (575)
Q Consensus 250 RTD 252 (575)
++.
T Consensus 140 ~~g 142 (303)
T PRK03620 140 RDN 142 (303)
T ss_pred CCC
Confidence 664
No 209
>PRK07328 histidinol-phosphatase; Provisional
Probab=20.42 E-value=3.2e+02 Score=28.02 Aligned_cols=132 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCCCCCccccccCcHHHHHHHh---hhcCCcCcE---------EeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCccc
Q 042063 375 LPRTREGFYRFKGSVDAAIIRG---WAFAPHADL---------IWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSF 442 (575)
Q Consensus 375 ~~Rt~eG~y~~~gg~~~ai~R~---~a~apyaDl---------~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSF 442 (575)
..++..|...+..=++.||+++ +++.-+++. -....+..++.+=.+..+.++++|++..+-..+= .
T Consensus 10 T~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE--~ 87 (269)
T PRK07328 10 TPLCGHAVGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIE--A 87 (269)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEE--e
Q ss_pred ccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhh---hhHHHHHHHHH----HhhHHHHHHHHHHHHHhcCCCccc
Q 042063 443 NWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADA---LVVDTFAKDYA----RRGMLAYVERIQREERNNGVDTLA 515 (575)
Q Consensus 443 nW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~---~~~~~la~~~~----~~GM~aYv~~vQ~~E~~~g~d~~~ 515 (575)
+|... +.+.++.|..+ +-|.+| |+++|... .-..++.+.|. ++-...|.+.+.+.-+...+|++.
T Consensus 88 ~~~~~--~~~~~~~~l~~-----~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlg 159 (269)
T PRK07328 88 DYHPG--TEEFLERLLEA-----YPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIG 159 (269)
T ss_pred cccCC--cHHHHHHHHHh-----CCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEee
Q ss_pred c
Q 042063 516 H 516 (575)
Q Consensus 516 H 516 (575)
|
T Consensus 160 H 160 (269)
T PRK07328 160 H 160 (269)
T ss_pred C
No 210
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=20.35 E-value=4.5e+02 Score=33.56 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=60.4
Q ss_pred CCcCcEEeeccCCCCHHHHHhHHhhhhhcC----CCc--eeeecCCcccccccCC-----------------------CC
Q 042063 400 APHADLIWMETASPDLAECTKFAGGIKSKH----PEI--MLAYNLSPSFNWDASG-----------------------MT 450 (575)
Q Consensus 400 apyaDl~W~Et~~P~l~~a~~Fa~~i~~~~----P~~--~laYN~SPSFnW~~~G-----------------------~s 450 (575)
.+.+|++.+|| -||+.+++.-..++++.+ ++. |+.+.+...=.-...| ..
T Consensus 175 e~GVDllliET-i~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~~~avGlNCs~G 253 (1229)
T PRK09490 175 EGGADLILIET-IFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRHAKPLSIGLNCALG 253 (1229)
T ss_pred hCCCCEEEEee-eCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCCCCEEEEcCCCc
Confidence 45699999999 899999998888887653 453 3333331100011112 24
Q ss_pred HHHHHhhHHHHHhc-Cceeeeecchhh-------hhhhhhHHHHHHHHHHhh
Q 042063 451 DEEMKDFIPRIAKL-GFCWQFITLAGF-------HADALVVDTFAKDYARRG 494 (575)
Q Consensus 451 ~~~i~~F~~~L~~~-G~~~Q~ItLaG~-------H~~~~~~~~la~~~~~~G 494 (575)
++++..++..|++. ..-.-..+-||+ +.+...+-++++.|.+.|
T Consensus 254 P~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G 305 (1229)
T PRK09490 254 ADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESG 305 (1229)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88999999999876 333344556663 455556667777777777
No 211
>PLN02826 dihydroorotate dehydrogenase
Probab=20.21 E-value=3.2e+02 Score=30.48 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=53.5
Q ss_pred CceeeeC--CCCCCCchHHHHHHHHHHHcCceEEEeccCCCc--------c--cccCCCCCCcccCHHHHHHHHHHHHHh
Q 042063 170 KPIIADG--DTGFGGTTATVKLCKLFVERGAAGVHIEDQSSV--------T--KKCGHMAGKVLVAISEHINRLVAARLQ 237 (575)
Q Consensus 170 lPIIAD~--DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~--------~--KkCGH~~Gk~Lvp~~E~v~RL~AAR~a 237 (575)
+||++=+ |.- ...+..+++..+++||.||.+-....+ + ...|-+.|++|-|.. ++-|..++.+
T Consensus 263 ~Pv~vKlaPdl~---~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~s--l~~v~~l~~~ 337 (409)
T PLN02826 263 PPLLVKIAPDLS---KEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLS--TEVLREMYRL 337 (409)
T ss_pred CceEEecCCCCC---HHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHH--HHHHHHHHHH
Confidence 8999855 321 235778889999999999988764310 1 123445788888763 2333333322
Q ss_pred hhhcCCceEEEEeecccccCchHHHHHHHHHhhhhccCCCC
Q 042063 238 FDVMGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPN 278 (575)
Q Consensus 238 ~d~~g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~ 278 (575)
.+.++-||+ .++|.+.-| -.+...+||+-+.
T Consensus 338 ---~~~~ipIIg------vGGI~sg~D-a~e~i~AGAs~VQ 368 (409)
T PLN02826 338 ---TRGKIPLVG------CGGVSSGED-AYKKIRAGASLVQ 368 (409)
T ss_pred ---hCCCCcEEE------ECCCCCHHH-HHHHHHhCCCeee
Confidence 233454543 566665555 2223336665543
No 212
>PRK06801 hypothetical protein; Provisional
Probab=20.12 E-value=4.9e+02 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEec
Q 042063 166 VDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIE 204 (575)
Q Consensus 166 vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIE 204 (575)
++ +||++=+-+|-+ .+.+++++++|+++|||-
T Consensus 202 ~~--~PLVlHGGSgi~-----~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 202 TG--LPLVLHGGSGIS-----DADFRRAIELGIHKINFY 233 (286)
T ss_pred cC--CCEEEECCCCCC-----HHHHHHHHHcCCcEEEeh
Confidence 45 899997666543 366788999999999984
No 213
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=20.09 E-value=1.1e+02 Score=33.05 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=28.6
Q ss_pred hhhcCCCceeeecCCccc------------ccccCCCCHHHHHhhHHHHHhcC
Q 042063 425 IKSKHPEIMLAYNLSPSF------------NWDASGMTDEEMKDFIPRIAKLG 465 (575)
Q Consensus 425 i~~~~P~~~laYN~SPSF------------nW~~~G~s~~~i~~F~~~L~~~G 465 (575)
|++..|+..+...+.|.+ .|++.|++.+++..+...+...|
T Consensus 117 i~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~~~~~~ 169 (368)
T cd06840 117 WPELFRGREVILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEARDLAKKAG 169 (368)
T ss_pred HHHhcccCCEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHHHHHHHhCC
Confidence 344445555555555543 48999999999999987777666
Done!