Query 042065
Match_columns 179
No_of_seqs 209 out of 3142
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:29:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.1E-20 2.4E-25 167.9 14.9 150 22-178 27-198 (968)
2 PLN03150 hypothetical protein; 99.8 5.8E-20 1.2E-24 156.4 13.0 156 19-179 367-526 (623)
3 PLN00113 leucine-rich repeat r 99.5 1.2E-14 2.6E-19 129.6 8.0 108 71-179 475-582 (968)
4 KOG0617 Ras suppressor protein 99.4 2E-14 4.4E-19 102.3 -3.6 105 70-178 32-160 (264)
5 KOG0617 Ras suppressor protein 99.3 1.6E-13 3.4E-18 97.8 -2.8 105 71-179 79-184 (264)
6 PLN03150 hypothetical protein; 99.3 8.7E-12 1.9E-16 106.6 7.2 83 96-179 419-501 (623)
7 KOG0472 Leucine-rich repeat pr 99.1 3.2E-11 7E-16 95.8 2.1 103 72-179 436-539 (565)
8 KOG4194 Membrane glycoprotein 99.1 2.6E-11 5.6E-16 100.2 -0.1 106 71-178 317-426 (873)
9 KOG0618 Serine/threonine phosp 99.0 1.1E-11 2.3E-16 106.6 -2.7 103 71-178 383-486 (1081)
10 PF14580 LRR_9: Leucine-rich r 99.0 3.3E-10 7.2E-15 81.9 4.7 100 71-175 42-147 (175)
11 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-09 2.6E-14 79.0 5.9 101 71-178 19-123 (175)
12 KOG0618 Serine/threonine phosp 98.9 2E-10 4.4E-15 98.9 0.8 105 71-179 359-463 (1081)
13 PF13855 LRR_8: Leucine rich r 98.9 5.6E-10 1.2E-14 66.8 2.3 57 121-178 2-59 (61)
14 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.4E-14 65.5 3.4 61 95-156 1-61 (61)
15 KOG0444 Cytoskeletal regulator 98.9 2.1E-10 4.7E-15 95.8 0.2 104 71-177 103-206 (1255)
16 KOG0472 Leucine-rich repeat pr 98.9 8.5E-11 1.8E-15 93.4 -2.3 102 71-178 206-307 (565)
17 KOG4194 Membrane glycoprotein 98.9 1.7E-09 3.8E-14 89.6 4.8 125 52-179 46-184 (873)
18 KOG0444 Cytoskeletal regulator 98.9 3.3E-10 7.1E-15 94.8 0.3 104 71-178 78-183 (1255)
19 KOG1259 Nischarin, modulator o 98.7 2.2E-09 4.8E-14 82.8 0.4 101 71-178 284-384 (490)
20 PF08263 LRRNT_2: Leucine rich 98.7 2.1E-08 4.6E-13 55.6 4.0 41 23-66 2-43 (43)
21 PRK15370 E3 ubiquitin-protein 98.7 4.3E-07 9.4E-12 79.2 13.8 98 72-179 179-294 (754)
22 cd00116 LRR_RI Leucine-rich re 98.7 9.6E-09 2.1E-13 80.6 3.2 105 73-178 110-231 (319)
23 PRK15370 E3 ubiquitin-protein 98.7 4.7E-08 1E-12 85.1 7.7 94 73-179 222-315 (754)
24 PLN03210 Resistant to P. syrin 98.7 3.7E-08 8E-13 89.8 7.2 101 71-177 778-878 (1153)
25 cd00116 LRR_RI Leucine-rich re 98.7 1.6E-08 3.4E-13 79.4 3.7 107 71-178 137-260 (319)
26 KOG4237 Extracellular matrix p 98.7 4.9E-09 1.1E-13 83.3 0.7 122 55-178 40-174 (498)
27 PRK15387 E3 ubiquitin-protein 98.7 3.7E-08 8.1E-13 85.7 5.9 55 120-179 402-456 (788)
28 PLN03210 Resistant to P. syrin 98.7 8.3E-08 1.8E-12 87.6 8.1 104 71-178 611-714 (1153)
29 KOG4579 Leucine-rich repeat (L 98.6 1.3E-09 2.8E-14 75.0 -2.8 87 72-163 54-141 (177)
30 KOG0532 Leucine-rich repeat (L 98.6 2.2E-09 4.7E-14 88.7 -2.1 97 76-178 148-244 (722)
31 KOG0532 Leucine-rich repeat (L 98.6 1.1E-08 2.3E-13 84.7 0.6 102 71-179 121-222 (722)
32 COG4886 Leucine-rich repeat (L 98.6 4.1E-08 8.8E-13 79.7 3.0 103 71-178 116-219 (394)
33 KOG4658 Apoptotic ATPase [Sign 98.5 8.9E-08 1.9E-12 84.7 3.8 105 71-177 545-651 (889)
34 KOG1259 Nischarin, modulator o 98.4 7.5E-08 1.6E-12 74.6 0.8 101 71-178 307-409 (490)
35 PF12799 LRR_4: Leucine Rich r 98.4 6.3E-07 1.4E-11 49.9 3.7 36 121-157 2-37 (44)
36 PRK15387 E3 ubiquitin-protein 98.4 3.9E-07 8.4E-12 79.5 4.2 83 72-164 383-465 (788)
37 COG4886 Leucine-rich repeat (L 98.3 1.7E-07 3.6E-12 76.1 1.5 99 72-175 141-239 (394)
38 KOG4579 Leucine-rich repeat (L 98.3 5.6E-08 1.2E-12 67.1 -1.3 103 72-178 28-133 (177)
39 PF12799 LRR_4: Leucine Rich r 98.3 1E-06 2.2E-11 49.0 3.4 40 95-137 1-40 (44)
40 KOG4237 Extracellular matrix p 98.3 2.5E-07 5.4E-12 73.8 1.1 88 90-178 269-356 (498)
41 KOG1644 U2-associated snRNP A' 98.3 1.6E-06 3.5E-11 63.5 4.9 101 72-177 43-149 (233)
42 KOG1859 Leucine-rich repeat pr 98.2 6.1E-08 1.3E-12 82.5 -4.5 100 72-178 165-264 (1096)
43 KOG4658 Apoptotic ATPase [Sign 98.0 6.1E-06 1.3E-10 73.3 4.7 104 71-178 523-628 (889)
44 KOG0531 Protein phosphatase 1, 97.8 1E-05 2.2E-10 66.3 1.6 101 71-178 95-196 (414)
45 KOG1859 Leucine-rich repeat pr 97.7 6.5E-07 1.4E-11 76.4 -5.7 102 71-178 187-289 (1096)
46 KOG0531 Protein phosphatase 1, 97.7 1.1E-05 2.5E-10 66.1 0.6 101 72-179 73-173 (414)
47 KOG3207 Beta-tubulin folding c 97.7 5.3E-06 1.1E-10 67.0 -1.5 105 71-179 197-312 (505)
48 KOG3207 Beta-tubulin folding c 97.6 6.6E-06 1.4E-10 66.5 -1.9 34 143-177 245-280 (505)
49 KOG3665 ZYG-1-like serine/thre 97.0 0.00029 6.2E-09 61.4 1.9 104 71-178 148-260 (699)
50 KOG3665 ZYG-1-like serine/thre 97.0 0.00065 1.4E-08 59.2 3.9 105 71-177 122-229 (699)
51 KOG2739 Leucine-rich acidic nu 97.0 0.00028 6E-09 53.6 1.3 100 71-175 43-150 (260)
52 PRK15386 type III secretion pr 97.0 0.0023 5E-08 52.3 6.3 59 72-138 53-112 (426)
53 PRK15386 type III secretion pr 96.8 0.0033 7.2E-08 51.4 5.6 34 70-105 71-104 (426)
54 KOG1644 U2-associated snRNP A' 96.7 0.0019 4.1E-08 47.7 3.7 79 95-178 42-123 (233)
55 KOG1909 Ran GTPase-activating 96.7 0.00039 8.5E-09 55.0 0.0 108 71-179 185-309 (382)
56 KOG2739 Leucine-rich acidic nu 96.6 0.0014 3E-08 49.9 2.3 39 119-157 64-104 (260)
57 KOG1909 Ran GTPase-activating 96.5 0.0018 3.9E-08 51.3 2.2 60 119-178 184-251 (382)
58 KOG2123 Uncharacterized conser 96.4 0.00029 6.3E-09 54.4 -2.4 98 71-174 19-123 (388)
59 PF00560 LRR_1: Leucine Rich R 96.4 0.0017 3.7E-08 30.3 1.0 11 123-133 3-13 (22)
60 PF00560 LRR_1: Leucine Rich R 96.3 0.0019 4E-08 30.1 0.9 22 145-167 1-22 (22)
61 KOG2982 Uncharacterized conser 96.2 0.00073 1.6E-08 52.7 -1.2 14 94-107 96-109 (418)
62 KOG2120 SCF ubiquitin ligase, 95.9 0.0013 2.9E-08 51.4 -1.0 11 143-153 312-322 (419)
63 KOG0473 Leucine-rich repeat pr 95.8 0.0003 6.5E-09 53.1 -4.9 84 70-157 41-124 (326)
64 KOG0473 Leucine-rich repeat pr 95.6 0.00036 7.9E-09 52.6 -4.9 85 90-178 37-121 (326)
65 KOG2123 Uncharacterized conser 95.2 0.0017 3.7E-08 50.3 -2.6 79 94-178 18-98 (388)
66 PF13306 LRR_5: Leucine rich r 95.2 0.086 1.9E-06 35.4 6.1 98 72-176 13-111 (129)
67 PF13504 LRR_7: Leucine rich r 95.1 0.013 2.9E-07 25.4 1.2 13 96-108 2-14 (17)
68 smart00369 LRR_TYP Leucine-ric 94.7 0.032 6.9E-07 26.8 2.1 20 95-115 2-21 (26)
69 smart00370 LRR Leucine-rich re 94.7 0.032 6.9E-07 26.8 2.1 20 95-115 2-21 (26)
70 KOG2120 SCF ubiquitin ligase, 94.5 0.002 4.4E-08 50.4 -3.7 58 71-129 185-243 (419)
71 KOG2982 Uncharacterized conser 94.5 0.039 8.4E-07 43.4 3.1 76 57-132 83-158 (418)
72 COG5238 RNA1 Ran GTPase-activa 94.3 0.034 7.3E-07 43.2 2.3 106 71-179 30-168 (388)
73 COG5238 RNA1 Ran GTPase-activa 94.2 0.16 3.4E-06 39.6 5.7 13 166-178 212-224 (388)
74 smart00370 LRR Leucine-rich re 93.3 0.083 1.8E-06 25.3 2.0 19 144-163 2-20 (26)
75 smart00369 LRR_TYP Leucine-ric 93.3 0.083 1.8E-06 25.3 2.0 19 144-163 2-20 (26)
76 PF13306 LRR_5: Leucine rich r 92.5 0.29 6.2E-06 32.8 4.5 93 72-170 36-128 (129)
77 KOG3864 Uncharacterized conser 90.5 0.041 8.8E-07 40.7 -1.5 82 72-153 102-185 (221)
78 PF13516 LRR_6: Leucine Rich r 88.8 0.11 2.4E-06 24.3 -0.2 13 96-108 3-15 (24)
79 smart00364 LRR_BAC Leucine-ric 83.9 0.69 1.5E-05 22.4 1.1 16 96-112 3-18 (26)
80 smart00368 LRR_RI Leucine rich 78.8 1.8 3.9E-05 21.1 1.6 14 95-108 2-15 (28)
81 smart00365 LRR_SD22 Leucine-ri 76.2 2.5 5.5E-05 20.4 1.7 13 121-133 3-15 (26)
82 KOG1947 Leucine rich repeat pr 75.5 1.8 3.9E-05 35.6 1.8 38 94-131 242-280 (482)
83 KOG1947 Leucine rich repeat pr 72.8 3.1 6.7E-05 34.2 2.5 88 91-178 210-305 (482)
84 KOG3763 mRNA export factor TAP 72.4 3.2 7E-05 35.4 2.5 13 71-83 218-230 (585)
85 KOG3864 Uncharacterized conser 68.2 1 2.2E-05 33.5 -1.1 80 96-176 102-184 (221)
86 smart00367 LRR_CC Leucine-rich 40.7 22 0.00048 16.6 1.4 11 168-178 2-12 (26)
87 TIGR00864 PCC polycystin catio 40.0 22 0.00048 36.4 2.4 33 77-109 1-33 (2740)
88 KOG3763 mRNA export factor TAP 36.6 20 0.00043 30.8 1.3 64 93-159 216-285 (585)
89 TIGR00864 PCC polycystin catio 27.0 38 0.00083 34.9 1.7 31 101-132 1-31 (2740)
90 KOG4308 LRR-containing protein 23.4 3.5 7.6E-05 34.8 -5.2 107 71-178 172-300 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=1.1e-20 Score=167.91 Aligned_cols=150 Identities=34% Similarity=0.619 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcccceeeecCCCCCcEEEEEecCCCceeeCCccCcCCCCCcEEE
Q 042065 22 TKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLD 101 (179)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~ 101 (179)
.++|+.||++|++++.+|...+. +|+. ..++|.|.|++|.. .++|+.|+++++++.+.++..+..+++|+.|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~-~w~~----~~~~c~w~gv~c~~--~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLS-NWNS----SADVCLWQGITCNN--SSRVVSIDLSGKNISGKISSAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCC-CCCC----CCCCCcCcceecCC--CCcEEEEEecCCCccccCChHHhCCCCCCEEE
Confidence 55899999999999987766676 8973 34789999999975 46899999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHhcccCccEEEcccCcCCcc----------------------cchhccCCccCCEeecccccCccc
Q 042065 102 LSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS----------------------IPTNLANCSYLNSLKLDHNRFSGQ 159 (179)
Q Consensus 102 L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~----------------------~p~~~~~l~~L~~L~l~~n~l~g~ 159 (179)
+++|.++|.+|..++..+++|++|++++|.+++. +|..++.+++|++|++++|.+.+.
T Consensus 100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 9999999899988773267777777776666554 444455555555666655555555
Q ss_pred CchhhcCCCCCCeEeccCC
Q 042065 160 IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 160 ~p~~~~~l~~L~~L~l~~N 178 (179)
+|..++++++|++|++++|
T Consensus 180 ~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred CChhhhhCcCCCeeeccCC
Confidence 5555555566666665554
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.83 E-value=5.8e-20 Score=156.37 Aligned_cols=156 Identities=29% Similarity=0.487 Sum_probs=131.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcccceeeecCCC---CCcEEEEEecCCCceeeCCccCcCCC
Q 042065 19 RYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPD---ENKVLNLRLTDMGLKGQFPRGIRNCS 95 (179)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~---~~~l~~L~l~~~~l~~~~p~~l~~l~ 95 (179)
.....+|..||..+|+.+..+.. . +|..+.+ .+..|.|.|+.|.... ...++.|+|+++.+.|.+|..+..++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~-~W~g~~C-~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--F-GWNGDPC-VPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--C-CCCCCCC-CCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 34566899999999999876532 2 8975322 1223489999996311 12599999999999999999999999
Q ss_pred CCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCC-CCCCeEe
Q 042065 96 SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQL-GRLKSFS 174 (179)
Q Consensus 96 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l-~~L~~L~ 174 (179)
+|+.|+|++|.+.|.+|..+.. +++|+.|+|++|+++|.+|..++.+++|+.|++++|+++|.+|..++.+ .++..++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 9999999999999999999998 9999999999999999999999999999999999999999999998764 4567788
Q ss_pred ccCCC
Q 042065 175 VANNL 179 (179)
Q Consensus 175 l~~N~ 179 (179)
+.+|.
T Consensus 522 ~~~N~ 526 (623)
T PLN03150 522 FTDNA 526 (623)
T ss_pred ecCCc
Confidence 87763
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=1.2e-14 Score=129.60 Aligned_cols=108 Identities=36% Similarity=0.617 Sum_probs=99.1
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+.. +++|+.|++++|.++|.+|..+..+++|+.|+
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS-CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC-ccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 46888999999998888888889999999999999999899999888 89999999999999999999999999999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|+++|.+|..+..+++|+++++++|+
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCc
Confidence 99999999999999999999999999885
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=2e-14 Score=102.26 Aligned_cols=105 Identities=27% Similarity=0.445 Sum_probs=81.8
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.+.++.|.+++|.++ .+|+.+..+.+|+.|++.+|++. .+|.++.. ++.|+.|+++.|++. .+|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhh
Confidence 356888888888887 67777888888899999999887 88888888 888888888888888 788888888888888
Q ss_pred ecccccCcc------------------------cCchhhcCCCCCCeEeccCC
Q 042065 150 KLDHNRFSG------------------------QIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 150 ~l~~n~l~g------------------------~~p~~~~~l~~L~~L~l~~N 178 (179)
++..|++.. .+|+.++++++|+.|.+..|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 877776541 34555566666666666554
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=1.6e-13 Score=97.78 Aligned_cols=105 Identities=29% Similarity=0.468 Sum_probs=88.7
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC-CCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY-GSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~-g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.+++.|++.-|.+. ..|..|+.++.|++||+.+|++. ..+|..++. +..|+-|+|++|.+. .+|..++.+++|+.|
T Consensus 79 ~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 79 PKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQIL 155 (264)
T ss_pred hhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEE
Confidence 45666677666665 57788888888888888888876 347888887 778888888899888 899999999999999
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
.+..|.+- ++|.+++.+.+|+.|++.+|+
T Consensus 156 ~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 156 SLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred eeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 99999998 899999999999999999885
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.27 E-value=8.7e-12 Score=106.59 Aligned_cols=83 Identities=39% Similarity=0.651 Sum_probs=79.7
Q ss_pred CCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEec
Q 042065 96 SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSV 175 (179)
Q Consensus 96 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l 175 (179)
.++.|+|++|.+.|.+|..+.. +++|+.|+|++|.+.|.+|..++.+++|+.|++++|+++|.+|..++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 042065 176 ANNL 179 (179)
Q Consensus 176 ~~N~ 179 (179)
++|+
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 9984
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.10 E-value=3.2e-11 Score=95.78 Aligned_cols=103 Identities=29% Similarity=0.443 Sum_probs=63.6
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch-hccCCccCCEee
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSLK 150 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~ 150 (179)
+++.|++++|-+. .+|.+++.+-.||.|+++.|+|. .+|..+-. +..++.+-.++|++. .++. .+.+|.+|.+|+
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTLETLLASNNQIG-SVDPSGLKNMRNLTTLD 511 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh-HHHHHHHHhcccccc-ccChHHhhhhhhcceec
Confidence 3444444444333 34444444444444444444444 44443333 333333333334444 3443 378899999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+.+|.+. .+|+.+++|.+|++|++.+|.
T Consensus 512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 512 LQNNDLQ-QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cCCCchh-hCChhhccccceeEEEecCCc
Confidence 9999999 899999999999999999984
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.05 E-value=2.6e-11 Score=100.19 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=76.8
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch---hccCCccCC
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT---NLANCSYLN 147 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~---~~~~l~~L~ 147 (179)
.++..|+|++|.++..-+.+|..+..|++|.|++|+++ .+-+..+..+++|+.|||.+|.+++.+-+ .+.+|++|+
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 35666666666666555556666666666666666665 44444443477888888888888876554 366789999
Q ss_pred EeecccccCcccCc-hhhcCCCCCCeEeccCC
Q 042065 148 SLKLDHNRFSGQIP-PQLGQLGRLKSFSVANN 178 (179)
Q Consensus 148 ~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N 178 (179)
.|.+.+|++. .+| ..|..+..|++|||++|
T Consensus 396 kL~l~gNqlk-~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 396 KLRLTGNQLK-SIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred heeecCceee-ecchhhhccCcccceecCCCC
Confidence 9999999998 666 56888999999999988
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.05 E-value=1.1e-11 Score=106.59 Aligned_cols=103 Identities=31% Similarity=0.417 Sum_probs=53.6
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|+|++|.+.......+.+++.|++|+|++|.++ .+|..+.. ++.|+.|...+|++. .+| .+..++.|+.+|
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~-~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN-LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-hhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 34555555555554222233445555555555555555 55555555 555555555555555 455 455556666666
Q ss_pred cccccCccc-CchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQ-IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~-~p~~~~~l~~L~~L~l~~N 178 (179)
++.|+++.. +|.... .++|++||+++|
T Consensus 459 lS~N~L~~~~l~~~~p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALP-SPNLKYLDLSGN 486 (1081)
T ss_pred cccchhhhhhhhhhCC-CcccceeeccCC
Confidence 666655422 222221 155666666665
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.3e-10 Score=81.88 Aligned_cols=100 Identities=25% Similarity=0.338 Sum_probs=43.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc--hhccCCccCCE
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~~ 148 (179)
.+++.|++++|.++ .++ .+..++.|+.|++++|.++ .+.+.+...+++|++|++++|++.. +- ..+..+++|+.
T Consensus 42 ~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD-LNELEPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S-CCCCGGGGG-TT--E
T ss_pred cCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC-hHHhHHHHcCCCcce
Confidence 46788888888877 343 3667788888888888887 5654443227788888888888763 22 34567788888
Q ss_pred eecccccCcccCch----hhcCCCCCCeEec
Q 042065 149 LKLDHNRFSGQIPP----QLGQLGRLKSFSV 175 (179)
Q Consensus 149 L~l~~n~l~g~~p~----~~~~l~~L~~L~l 175 (179)
|++.+|+++ ..+. .+..+|+|+.||-
T Consensus 118 L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred eeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 888888887 3332 2556778887764
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=1.2e-09 Score=78.98 Aligned_cols=101 Identities=30% Similarity=0.406 Sum_probs=39.7
Q ss_pred CcEEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhc-cCCccCCE
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~ 148 (179)
.++++|+|++|.+.. +. .++ .+.+|+.|++++|.++ .++ .+.. +++|+.|++++|+++ .+++.+ ..+++|+.
T Consensus 19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~-L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPG-LPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccC-hhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 357899999999873 33 355 5789999999999998 665 4555 899999999999999 676555 46899999
Q ss_pred eecccccCcccCc--hhhcCCCCCCeEeccCC
Q 042065 149 LKLDHNRFSGQIP--PQLGQLGRLKSFSVANN 178 (179)
Q Consensus 149 L~l~~n~l~g~~p--~~~~~l~~L~~L~l~~N 178 (179)
|++++|++. .+- ..+..+++|+.|++.+|
T Consensus 93 L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 93 LYLSNNKIS-DLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred EECcCCcCC-ChHHhHHHHcCCCcceeeccCC
Confidence 999999997 332 44678899999999987
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.93 E-value=2e-10 Score=98.88 Aligned_cols=105 Identities=28% Similarity=0.380 Sum_probs=97.4
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..++.|.+.+|.++...-+.+.++++|++|+|++|++. .+|....+.+..|++|+|++|.++ .+|..+..+..|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 46888999999999887778899999999999999997 899888777999999999999999 8999999999999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
..+|++. .+| ++..+++|+.+|++.|+
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccch
Confidence 9999999 889 89999999999999985
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=5.6e-10 Score=66.84 Aligned_cols=57 Identities=32% Similarity=0.542 Sum_probs=27.6
Q ss_pred CccEEEcccCcCCcccc-hhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 121 FLTGLDLSSNNFSGSIP-TNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 121 ~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+|+.|++++|+++ .+| ..+.++++|++|++++|+++..-|..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3445555555555 233 34444555555555555554332334455555555555554
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.1e-09 Score=65.53 Aligned_cols=61 Identities=36% Similarity=0.490 Sum_probs=53.1
Q ss_pred CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccC
Q 042065 95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRF 156 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l 156 (179)
++|++|++++|.++ .+|...++.+++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999998 77765555599999999999999966566899999999999999975
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.91 E-value=2.1e-10 Score=95.84 Aligned_cols=104 Identities=25% Similarity=0.344 Sum_probs=53.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..++.|+|+.|.+. .+|..+...+++-+|+|++|++. +||..++..+.-|..|||++|++. .+|+.+..+..|++|.
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 34555555555555 45555555555555555555554 555544433555555555555555 5555555555555555
Q ss_pred cccccCcccCchhhcCCCCCCeEeccC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVAN 177 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~ 177 (179)
|++|.+.-.--..+..|++|+.|++++
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhccc
Confidence 555554311122333444555555544
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.91 E-value=8.5e-11 Score=93.43 Aligned_cols=102 Identities=27% Similarity=0.435 Sum_probs=84.6
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++..|++..|++. .+| +|.+++.|.+|+++.|++. .+|.+...-++++..||+.+|++. .+|..+.-+++|+.|+
T Consensus 206 ~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 206 ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD 281 (565)
T ss_pred hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence 35556677777776 556 6788888888888888887 888888744889999999999999 8999998899999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|.++ .+|.+++++ .|+.|.+.+|
T Consensus 282 lSNN~is-~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 282 LSNNDIS-SLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ccCCccc-cCCcccccc-eeeehhhcCC
Confidence 9999999 789999988 7888888777
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-09 Score=89.63 Aligned_cols=125 Identities=24% Similarity=0.298 Sum_probs=91.0
Q ss_pred CCCCCCcccceeeecCCC-------------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhc
Q 042065 52 DTEGFICKFTGVECWHPD-------------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKL 118 (179)
Q Consensus 52 ~~~~~~c~w~gv~c~~~~-------------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~ 118 (179)
+...++|.-.-..|.... .+.++.|++++|.+...-+..|.++++|+++.+..|.++ .+|.....
T Consensus 46 cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~- 123 (873)
T KOG4194|consen 46 CPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE- 123 (873)
T ss_pred CCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-
Confidence 334566766666675422 245678999999998766777888999999999999988 88876655
Q ss_pred ccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCc-hhhcCCCCCCeEeccCCC
Q 042065 119 VGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 119 l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N~ 179 (179)
..+|+.|+|.+|.++..-.+.+..++.|+.|+|+.|.++ .+| +.|..-.++++|+|++|+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNR 184 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccc
Confidence 677888888888887544556777788888888888887 554 334455667777777763
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.88 E-value=3.3e-10 Score=94.77 Aligned_cols=104 Identities=32% Similarity=0.474 Sum_probs=81.0
Q ss_pred CcEEEEEecCCCcee-eCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchh-ccCCccCCE
Q 042065 71 NKVLNLRLTDMGLKG-QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~-~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~ 148 (179)
++++++.++.|++.. .+|+.+-.+..|+.|||++|++. .+|..+.. .+++..|+|++|++. +||.. +.+++.|-.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 456777777777652 36777778888888888888887 88888877 777888888888888 67764 457778888
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
|+|+.|.+. .+|+.+.++..|+.|+|++|
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCC
Confidence 888888887 78888888888888888877
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=2.2e-09 Score=82.84 Aligned_cols=101 Identities=21% Similarity=0.304 Sum_probs=63.1
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..+++++|++|.++ ++..++.-++.++.|+++.|.+. .+- ++.. +++|+.|||++|.++ .+-.+...+-+.+.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~-L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAE-LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhh-cccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 44677888888877 67777777788888888888886 443 3555 788888888888776 4444444444555555
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|.+. .+ ..++.+-+|..||+++|
T Consensus 359 La~N~iE-~L-SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 359 LAQNKIE-TL-SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhhhhHh-hh-hhhHhhhhheecccccc
Confidence 5555443 11 22333344444444444
No 20
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.72 E-value=2.1e-08 Score=55.63 Aligned_cols=41 Identities=34% Similarity=0.636 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCC-CCCCCCCCCCCCCCCCCCCcccceeeec
Q 042065 23 KEDIACLKSIKDSLED-PFNYLNSSWNFNNDTEGFICKFTGVECW 66 (179)
Q Consensus 23 ~~~~~~l~~~~~~~~~-~~~~~~~~W~~~~~~~~~~c~w~gv~c~ 66 (179)
++|.+||++||+++.. +...+. +|+... ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~-~W~~~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLS-SWNPSS--DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCT-T--TT----S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccc-cCCCcC--CCCCeeeccEEeC
Confidence 5799999999999985 556676 999653 3589999999994
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.71 E-value=4.3e-07 Score=79.17 Aligned_cols=98 Identities=36% Similarity=0.519 Sum_probs=51.5
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHh------------------cccCccEEEcccCcCC
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISK------------------LVGFLTGLDLSSNNFS 133 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~------------------~l~~L~~L~L~~n~l~ 133 (179)
+.+.|++++++++ .+|..+. +.|+.|++++|.++ .+|..+.. +.+.|+.|++++|.+.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT 254 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC
Confidence 3456666666665 3454332 34555555555555 45543321 0123444455555444
Q ss_pred cccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 134 GSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 134 g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
.+|..+. .+|+.|+++.|+++ .+|..+. ++|+.|++++|+
T Consensus 255 -~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 255 -ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred -cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCc
Confidence 4444332 35666666666666 4565443 367777777663
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=9.6e-09 Score=80.59 Aligned_cols=105 Identities=22% Similarity=0.403 Sum_probs=56.1
Q ss_pred EEEEEecCCCcee----eCCccCcCC-CCCcEEEcccCCCCCCCh----hHHHhcccCccEEEcccCcCCc----ccchh
Q 042065 73 VLNLRLTDMGLKG----QFPRGIRNC-SSMTGLDLSSNKLYGSLP----DDISKLVGFLTGLDLSSNNFSG----SIPTN 139 (179)
Q Consensus 73 l~~L~l~~~~l~~----~~p~~l~~l-~~L~~L~L~~n~l~g~~p----~~~~~~l~~L~~L~L~~n~l~g----~~p~~ 139 (179)
+++|++++|.+.. .+...+..+ ++|+.|++++|.+++..+ ..+.. +..|+.|++++|.+++ .++..
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHH
Confidence 5566666555541 112223344 566666666666653222 22222 4456666666666653 22333
Q ss_pred ccCCccCCEeecccccCccc----CchhhcCCCCCCeEeccCC
Q 042065 140 LANCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 140 ~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N 178 (179)
+..+++|+.|++++|.+++. ++..+..+++|++|++++|
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 44455677777777766522 2334455667777777766
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.70 E-value=4.7e-08 Score=85.07 Aligned_cols=94 Identities=26% Similarity=0.430 Sum_probs=65.1
Q ss_pred EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065 73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152 (179)
Q Consensus 73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~ 152 (179)
++.|++++|.++ .+|..+ .+.|+.|++++|.+. .+|..+. ..|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 222 L~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 222 IKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 444444444443 233322 235666777777766 6666553 47999999999999 7887664 589999999
Q ss_pred cccCcccCchhhcCCCCCCeEeccCCC
Q 042065 153 HNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|+++ .+|..+. ++|+.|++++|+
T Consensus 292 ~N~Lt-~LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 292 DNSIR-TLPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred CCccc-cCcccch--hhHHHHHhcCCc
Confidence 99999 6776553 478888888874
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.70 E-value=3.7e-08 Score=89.84 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=60.7
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ . +++|+.|++++|.....+|.. .++|+.|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~ 852 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-LESLESLDLSGCSRLRTFPDI---STNISDLN 852 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCEEECCCCCcccccccc---ccccCEeE
Confidence 467888888887777788888888888888888775444677554 3 555666666555433233321 23444555
Q ss_pred cccccCcccCchhhcCCCCCCeEeccC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVAN 177 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~ 177 (179)
+++|.++ .+|..+..+++|+.|++++
T Consensus 853 Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 853 LSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 5555554 4454444455555554444
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=1.6e-08 Score=79.40 Aligned_cols=107 Identities=22% Similarity=0.308 Sum_probs=56.1
Q ss_pred CcEEEEEecCCCceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcc----cch
Q 042065 71 NKVLNLRLTDMGLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGS----IPT 138 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~----~p~ 138 (179)
.+++.|++++|.+++. ++..+..++.|+.|++++|.+++. ++..+.. +++|++|++++|.+.+. ++.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHH
Confidence 3566666666666532 222344455666666666666532 2222333 34666666666666522 233
Q ss_pred hccCCccCCEeecccccCcccCchhhc-----CCCCCCeEeccCC
Q 042065 139 NLANCSYLNSLKLDHNRFSGQIPPQLG-----QLGRLKSFSVANN 178 (179)
Q Consensus 139 ~~~~l~~L~~L~l~~n~l~g~~p~~~~-----~l~~L~~L~l~~N 178 (179)
.+..+++|++|++++|.+++.-...+. ..+.|+.|++++|
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 345556666666666666532122211 1256666666665
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.67 E-value=4.9e-09 Score=83.29 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=88.5
Q ss_pred CCCccc---ceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCcc
Q 042065 55 GFICKF---TGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLT 123 (179)
Q Consensus 55 ~~~c~w---~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~ 123 (179)
++.|+= .-|.|.... +...++|+|..|.++...+..|..+++|++|||++|.++-.-|..+.. +.++.
T Consensus 40 pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-L~~l~ 118 (498)
T KOG4237|consen 40 PCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG-LASLL 118 (498)
T ss_pred CcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh-hHhhh
Confidence 344544 346776422 356789999999999766778999999999999999999555666655 77777
Q ss_pred EEEccc-CcCCcccch-hccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 124 GLDLSS-NNFSGSIPT-NLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 124 ~L~L~~-n~l~g~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
.|-+-+ |+++ .+|. .|+++.+|+.|.+.-|++.-.....|..+++|..|.+-.|
T Consensus 119 ~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 119 SLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred HHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence 766655 8888 5664 5778888888888777777444556667777766666554
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.66 E-value=3.7e-08 Score=85.69 Aligned_cols=55 Identities=27% Similarity=0.320 Sum_probs=39.6
Q ss_pred cCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 120 GFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 120 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|+
T Consensus 402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 34555666666655 45542 235677888888887 788889999999999999985
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.65 E-value=8.3e-08 Score=87.58 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=66.7
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++.++.+. .++..+..+++|+.|+|+++.....+|. +.. +++|+.|++.+|.....+|..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc-CCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 45666666666655 4555566677777777776654445653 444 66777777777655456777777777777777
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++++.....+|..+ ++++|+.|++++|
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 77654444666654 5666666666654
No 29
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.65 E-value=1.3e-09 Score=75.03 Aligned_cols=87 Identities=24% Similarity=0.432 Sum_probs=50.7
Q ss_pred cEEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 72 KVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++.++|++|.+. .+|+.|. .++.++.|++++|.++ .+|.++.. ++.|+.|++++|.+. ..|.-+..+.++..|+
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 4555666666665 3343333 3445666666666665 66666555 666666666666666 5555555566666666
Q ss_pred cccccCcccCchh
Q 042065 151 LDHNRFSGQIPPQ 163 (179)
Q Consensus 151 l~~n~l~g~~p~~ 163 (179)
...|... ++|..
T Consensus 130 s~~na~~-eid~d 141 (177)
T KOG4579|consen 130 SPENARA-EIDVD 141 (177)
T ss_pred CCCCccc-cCcHH
Confidence 6666655 45443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=2.2e-09 Score=88.66 Aligned_cols=97 Identities=25% Similarity=0.440 Sum_probs=54.9
Q ss_pred EEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccccc
Q 042065 76 LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNR 155 (179)
Q Consensus 76 L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~ 155 (179)
|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..+.. +.+|+.|.+..|++. .+|+.+. .-.|..|+++.|+
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence 334444443 34444444455555555555554 55555555 555555555555555 5555555 2335666777777
Q ss_pred CcccCchhhcCCCCCCeEeccCC
Q 042065 156 FSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 156 l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++ .+|..|.+|..|++|-|.+|
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccC
Confidence 76 66777777777777766665
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=1.1e-08 Score=84.67 Aligned_cols=102 Identities=29% Similarity=0.456 Sum_probs=84.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..+++|+|+.|.+. .+|..+..|+ |+.|-+++|.++ .+|..++. ++.|..||.+.|++. .+|..++.+.+|+.|.
T Consensus 121 ~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~-~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 121 EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL-LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc-chhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 45677888888877 6777777777 888888888887 88888884 888888888888888 7888888888888888
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+.+|++. .+|+++..++ |..||+++|+
T Consensus 196 vrRn~l~-~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred Hhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence 8888888 7888888655 7888888885
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=4.1e-08 Score=79.68 Aligned_cols=103 Identities=35% Similarity=0.545 Sum_probs=83.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCC-CCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCS-SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~-~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..++.|++.++.+. .+++....+. +|+.|++++|.+. .+|..+.. ++.|+.|++++|++. .+|...+..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhc-cccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 35788888888887 5666666664 8999999999987 78777777 888999999999988 777776678889999
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++++|++. .+|........|+.+.+++|
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 99999998 78887766667888888877
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=8.9e-08 Score=84.67 Aligned_cols=105 Identities=29% Similarity=0.299 Sum_probs=87.5
Q ss_pred CcEEEEEecCCC--ceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 71 NKVLNLRLTDMG--LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~--l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
+++++|-+.+|. +.-.....|..++.|++|||++|.--+.+|..++. +-+|++|+++...+. .+|..++++++|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 468888888886 44233445778999999999998877799999999 899999999999999 89999999999999
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVAN 177 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~ 177 (179)
|++..+.....+|.....+.+|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 99998876546667677799999998753
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=7.5e-08 Score=74.55 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=77.6
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
++++.|++++|++. .+. .+..+++|+.|||++|.++ .+..--.. +.++..|.|+.|.+. .+ ..++.+-+|..|+
T Consensus 307 Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K-LGNIKtL~La~N~iE-~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 307 PKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLK-LGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLD 380 (490)
T ss_pred cceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhh-hcCEeeeehhhhhHh-hh-hhhHhhhhheecc
Confidence 68999999999997 343 3888999999999999987 55443344 778888888888877 43 3466777888888
Q ss_pred cccccCcccCc--hhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIP--PQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p--~~~~~l~~L~~L~l~~N 178 (179)
+.+|++. .+- ..+++++.|+++.+.+|
T Consensus 381 l~~N~Ie-~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 381 LSSNQIE-ELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred ccccchh-hHHHhcccccccHHHHHhhcCC
Confidence 8888886 332 34778888888888776
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=6.3e-07 Score=49.88 Aligned_cols=36 Identities=39% Similarity=0.594 Sum_probs=20.3
Q ss_pred CccEEEcccCcCCcccchhccCCccCCEeecccccCc
Q 042065 121 FLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFS 157 (179)
Q Consensus 121 ~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~ 157 (179)
+|++|++++|+++ .+|..+.+|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666666 45555566666666666666655
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.36 E-value=3.9e-07 Score=79.47 Aligned_cols=83 Identities=25% Similarity=0.281 Sum_probs=63.1
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
+++.|++++|.+. .+|.. .++|+.|++++|.++ .+|.. +.+|+.|++++|+++ .+|..+..+++|+.+++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 3555555555555 24432 256778888888887 57753 345788999999999 89999999999999999
Q ss_pred ccccCcccCchhh
Q 042065 152 DHNRFSGQIPPQL 164 (179)
Q Consensus 152 ~~n~l~g~~p~~~ 164 (179)
++|++++..|..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 9999998877766
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=1.7e-07 Score=76.12 Aligned_cols=99 Identities=31% Similarity=0.493 Sum_probs=71.7
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
+++.|++++|.+. .+|..+..++.|+.|+++.|.+. .+|..... ++.|+.|++++|++. .+|.....+..|+.+.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 7899999999987 56667788999999999999998 88877655 778889999999888 77776555566777777
Q ss_pred ccccCcccCchhhcCCCCCCeEec
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSV 175 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l 175 (179)
++|... ..+..+..+.++..+.+
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred cCCcce-ecchhhhhccccccccc
Confidence 777432 23333344444443333
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=5.6e-08 Score=67.07 Aligned_cols=103 Identities=24% Similarity=0.338 Sum_probs=84.4
Q ss_pred cEEEEEecCCCceeeCCccC---cCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 72 KVLNLRLTDMGLKGQFPRGI---RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l---~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
....++|+.+.+. .++... .....|+..+|++|.|. .+|..+...++.++.+++++|+++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3456777777764 455443 34456777899999998 899998886778999999999999 89999999999999
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++++.|.+. ..|..+..+.++..|+..+|
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 999999998 77888888888888887766
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=1e-06 Score=49.02 Aligned_cols=40 Identities=38% Similarity=0.576 Sum_probs=28.7
Q ss_pred CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc
Q 042065 95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP 137 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p 137 (179)
++|++|++++|.++ .+|+.+.+ +++|+.|++++|.++ .++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~-l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSN-LPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTT-CTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhC-CCCCCEEEecCCCCC-CCc
Confidence 35778888888887 77777777 788888888888777 443
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.27 E-value=2.5e-07 Score=73.79 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=69.1
Q ss_pred cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCC
Q 042065 90 GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGR 169 (179)
Q Consensus 90 ~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~ 169 (179)
.|..+++|+.|+|++|.+++.-+..+.. +..+++|.|..|++...-...|.++..|+.|+|.+|+++-.-|..|..+.+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~-~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEG-AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcc-hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 4778899999999999998444444444 888999999999888444446778888999999999998666888888888
Q ss_pred CCeEeccCC
Q 042065 170 LKSFSVANN 178 (179)
Q Consensus 170 L~~L~l~~N 178 (179)
|..|.+-.|
T Consensus 348 l~~l~l~~N 356 (498)
T KOG4237|consen 348 LSTLNLLSN 356 (498)
T ss_pred eeeeehccC
Confidence 888887665
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.26 E-value=1.6e-06 Score=63.48 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=80.8
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc--hhccCCccCCEe
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSYLNSL 149 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~~L 149 (179)
....++|++|.+. .+ ..|..++.|..|.+.+|.++ .+-+.+..+++.|..|.|.+|++. .+- ..+..+++|+.|
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 4678999999876 33 34677899999999999999 777778777899999999999987 333 246788999999
Q ss_pred ecccccCcccCch----hhcCCCCCCeEeccC
Q 042065 150 KLDHNRFSGQIPP----QLGQLGRLKSFSVAN 177 (179)
Q Consensus 150 ~l~~n~l~g~~p~----~~~~l~~L~~L~l~~ 177 (179)
.+-+|+.+ ..+. .+..+++|+.||+.+
T Consensus 119 tll~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchh-cccCceeEEEEecCcceEeehhh
Confidence 99999987 3332 256789999999864
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=6.1e-08 Score=82.46 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=52.3
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
++...+.++|.+. .+..++.-++.|+.|+|++|.++ .+- .+.. ++.|.+|||+.|.+. .+|.--..-..|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~-l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRR-LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHh-cccccccccccchhc-cccccchhhhhheeeee
Confidence 3445555555554 34555555566666666666665 222 4555 566666666666666 45542111112555555
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++|.++ .+ ..+.++.+|..||+++|
T Consensus 240 rnN~l~-tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 240 RNNALT-TL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred cccHHH-hh-hhHHhhhhhhccchhHh
Confidence 555554 22 23445555555555554
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.02 E-value=6.1e-06 Score=73.28 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=84.2
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCC--CCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK--LYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~--l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
..++.+.+.++.+. .++... ..+.|+.|-+..|. +. .++..++.-++.|++|||++|.=-+.+|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 35667777777665 344433 34579999999986 54 677665555999999999998766799999999999999
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
|++++..+. .+|..+++++.|.+|++..+
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccc
Confidence 999999999 89999999999999998764
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=1e-05 Score=66.34 Aligned_cols=101 Identities=29% Similarity=0.358 Sum_probs=63.2
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++.+|.+.. +...+..+.+|++|++++|.++ .+. .+.. ++.|+.|++.+|.++ .+. .+..++.|+.++
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~-l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLST-LTLLKELNLSGNLIS-DIS-GLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhh-ccchhhheeccCcch-hcc-CCccchhhhccc
Confidence 456777777777763 3332556777777777777776 332 2233 556777777777777 433 345577777777
Q ss_pred cccccCcccCchh-hcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~-~~~l~~L~~L~l~~N 178 (179)
+++|.+. .+... ...+.+++.+++.+|
T Consensus 169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELISLEELDLGGN 196 (414)
T ss_pred CCcchhh-hhhhhhhhhccchHHHhccCC
Confidence 7777777 33332 355566666666665
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=6.5e-07 Score=76.38 Aligned_cols=102 Identities=24% Similarity=0.239 Sum_probs=79.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..++.|+|+.|.++. +. .+..++.|++|||++|.+. .+|.--...+ .|+.|.+.+|.++ .+ ..+.++++|+.|+
T Consensus 187 ~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence 467899999999873 33 6788999999999999998 7775332213 3999999999988 44 4678999999999
Q ss_pred cccccCcccCc-hhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIP-PQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p-~~~~~l~~L~~L~l~~N 178 (179)
++.|-+.+.-- ..+..+..|+.|+|.+|
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99998874321 23456677888888887
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=1.1e-05 Score=66.06 Aligned_cols=101 Identities=27% Similarity=0.318 Sum_probs=77.4
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
.+..+.++.|.+.. +-..+..+++|..|++.+|.+. .+...+.. +++|++|++++|.++ .+. .+..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~-~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSS-LVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhh-hhcchheeccccccc-ccc-chhhccchhhhee
Confidence 34555566666653 3344677899999999999998 55544666 889999999999999 443 4667788999999
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
.+|.++ .+ ..+..+++|+.+++++|+
T Consensus 148 ~~N~i~-~~-~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 148 SGNLIS-DI-SGLESLKSLKLLDLSYNR 173 (414)
T ss_pred ccCcch-hc-cCCccchhhhcccCCcch
Confidence 999998 43 345558899999999884
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=5.3e-06 Score=67.04 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=52.7
Q ss_pred CcEEEEEecCCCceee-CCccCcCCCCCcEEEcccCCCCC--CChhHHHhcccCccEEEcccCcCCcccc--hhccCCcc
Q 042065 71 NKVLNLRLTDMGLKGQ-FPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSY 145 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~ 145 (179)
++++.|.++.|+++-. +...+..+++|..|+|..|..-+ ..+..+ +..|++|||++|.+- ..+ ..++.++.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li-~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLI-DFDQGYKVGTLPG 272 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCccc-ccccccccccccc
Confidence 3444444554444311 11223344555555555552111 112222 335666666666655 344 34566677
Q ss_pred CCEeecccccCccc-Cchh-----hcCCCCCCeEeccCCC
Q 042065 146 LNSLKLDHNRFSGQ-IPPQ-----LGQLGRLKSFSVANNL 179 (179)
Q Consensus 146 L~~L~l~~n~l~g~-~p~~-----~~~l~~L~~L~l~~N~ 179 (179)
|+.|+++.+.+... .|+. ...+++|++|++..|+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 77777776666511 1222 2356778888777764
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=6.6e-06 Score=66.48 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=15.6
Q ss_pred CccCCEeecccccCcccCc--hhhcCCCCCCeEeccC
Q 042065 143 CSYLNSLKLDHNRFSGQIP--PQLGQLGRLKSFSVAN 177 (179)
Q Consensus 143 l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~~L~l~~ 177 (179)
++.|+.|+|++|++. .++ ...+.++.|..|.++.
T Consensus 245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred hhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence 344555555555544 333 2334444554444443
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00029 Score=61.38 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=63.4
Q ss_pred CcEEEEEecCCCceee-CCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCc-ccchhccCCccCCE
Q 042065 71 NKVLNLRLTDMGLKGQ-FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~ 148 (179)
+.+++|.+.+..+... +..-..++++|..||+++.+++ .+ ..+.+ +++|+.|.+.+=.+.. ..-..+.++++|++
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~-LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISR-LKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhc-cccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 5677777777655321 2233456677888888887776 44 55666 7777777666555541 11124566888888
Q ss_pred eecccccCcccCc-------hhhcCCCCCCeEeccCC
Q 042065 149 LKLDHNRFSGQIP-------PQLGQLGRLKSFSVANN 178 (179)
Q Consensus 149 L~l~~n~l~g~~p-------~~~~~l~~L~~L~l~~N 178 (179)
||+|+.... ..+ +....+|.|+.||.++.
T Consensus 225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred eeccccccc-cchHHHHHHHHhcccCccccEEecCCc
Confidence 888876544 222 11234678888887764
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00065 Score=59.23 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=50.6
Q ss_pred CcEEEEEecCCCcee-eCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 71 NKVLNLRLTDMGLKG-QFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~-~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
.++++|+++|...-. ..|..++ .+|+|+.|.+.+-.+...--..+...+++|..||+++.+++ .+ ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 345666665543211 1111122 35666666666655432111122222566666666666665 33 44556666666
Q ss_pred eecccccCcc-cCchhhcCCCCCCeEeccC
Q 042065 149 LKLDHNRFSG-QIPPQLGQLGRLKSFSVAN 177 (179)
Q Consensus 149 L~l~~n~l~g-~~p~~~~~l~~L~~L~l~~ 177 (179)
|.+.+=.|.. ..=..+..+++|++||+|.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 6555444431 1113455566666666654
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00028 Score=53.64 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=66.2
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccC--CCCCCChhHHHhcccCccEEEcccCcCCcccchhc---cCCcc
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSN--KLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL---ANCSY 145 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n--~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~---~~l~~ 145 (179)
..++.+.+.+.+++. + ..+..++.|+.|.++.| ++.+.++.-... +++|++++++.|.+. . +..+ ..+.+
T Consensus 43 ~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~-~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIK-D-LSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccc-c-ccccchhhhhcc
Confidence 446666666666552 1 23556788999999999 666666666666 799999999999987 2 3433 44556
Q ss_pred CCEeecccccCcccC-c--hhhcCCCCCCeEec
Q 042065 146 LNSLKLDHNRFSGQI-P--PQLGQLGRLKSFSV 175 (179)
Q Consensus 146 L~~L~l~~n~l~g~~-p--~~~~~l~~L~~L~l 175 (179)
|..|++..+..+..- + ..|..+++|++||-
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 777788777665311 1 22456677777753
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.97 E-value=0.0023 Score=52.29 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=31.4
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC-cCCcccch
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN-NFSGSIPT 138 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n-~l~g~~p~ 138 (179)
.++.|++++|.++ .+|. + .++|+.|.++++.--..+|..+ .++|+.|++.+| .+. .+|.
T Consensus 53 ~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred CCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc
Confidence 4567777777655 3441 1 2356777776533222555443 235666666666 333 4443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.77 E-value=0.0033 Score=51.42 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=19.8
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccC
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSN 105 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n 105 (179)
...|++|.++++.-...+|..+ .++|+.|++++|
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3457777777644333445433 246677777766
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.74 E-value=0.0019 Score=47.68 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=59.3
Q ss_pred CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccC-CccCCEeecccccCcccCc--hhhcCCCCCC
Q 042065 95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN-CSYLNSLKLDHNRFSGQIP--PQLGQLGRLK 171 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~-l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~ 171 (179)
.....+||++|.+. .++ .+.. +++|.+|.+.+|+++ .+.+.+.. +++|..|.+.+|.+. .+- ..+..+++|+
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~-l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPH-LPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchh-hcc-cCCC-ccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence 45678899999885 332 3444 789999999999999 55555554 578999999999886 332 2356788999
Q ss_pred eEeccCC
Q 042065 172 SFSVANN 178 (179)
Q Consensus 172 ~L~l~~N 178 (179)
+|.+-+|
T Consensus 117 ~Ltll~N 123 (233)
T KOG1644|consen 117 YLTLLGN 123 (233)
T ss_pred eeeecCC
Confidence 9988776
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.71 E-value=0.00039 Score=54.95 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=67.3
Q ss_pred CcEEEEEecCCCceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcccc----h
Q 042065 71 NKVLNLRLTDMGLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGSIP----T 138 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~~p----~ 138 (179)
+.+..+.+..|++... +...|..+++|++|||..|.|+-. +-..+.. +++|++|++++|.+...-. .
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccccccccccHHHHHH
Confidence 3566777777765421 123456778888888888888622 2223334 6678888888887763211 1
Q ss_pred hc-cCCccCCEeecccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065 139 NL-ANCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 139 ~~-~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N~ 179 (179)
.+ ...++|+.+.+.+|.++.. +-..+...+.|..|++++|+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 12 2357888888888888622 22334556778888888774
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.0014 Score=49.88 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=20.5
Q ss_pred ccCccEEEcccC--cCCcccchhccCCccCCEeecccccCc
Q 042065 119 VGFLTGLDLSSN--NFSGSIPTNLANCSYLNSLKLDHNRFS 157 (179)
Q Consensus 119 l~~L~~L~L~~n--~l~g~~p~~~~~l~~L~~L~l~~n~l~ 157 (179)
+++|+.|.++.| +.++.++.....+++|+++++++|++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 455555555555 444444443444455566666655554
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.47 E-value=0.0018 Score=51.32 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=35.1
Q ss_pred ccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCccc----CchhhcCCCCCCeEeccCC
Q 042065 119 VGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 119 l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N 178 (179)
.+.|+.+.+..|.+.- .+-..+..++.|+.|++..|-|+-. +...+..++.|+.|++++|
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 4455555555555431 1123456677777788877777521 2344556677777777765
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.00029 Score=54.43 Aligned_cols=98 Identities=29% Similarity=0.304 Sum_probs=56.6
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch--hccCCccCCE
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT--NLANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L~~ 148 (179)
..|..|++-|+++.. +. ....++.|++|.|+-|.++ .+- .+.. +++|++|+|..|.+. .+.+ -+.++++|+.
T Consensus 19 ~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIs-sL~-pl~r-CtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKIS-SLA-PLQR-CTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCCccH-HH-HHHhcccceeEEeeccccc-cch-hHHH-HHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 345556666666542 11 2345667777777777776 332 2334 667777777777766 3432 2456777777
Q ss_pred eecccccCcccCchh-----hcCCCCCCeEe
Q 042065 149 LKLDHNRFSGQIPPQ-----LGQLGRLKSFS 174 (179)
Q Consensus 149 L~l~~n~l~g~~p~~-----~~~l~~L~~L~ 174 (179)
|.|..|...|.-+.. +..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777776554432 33455555554
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.38 E-value=0.0017 Score=30.26 Aligned_cols=11 Identities=55% Similarity=0.676 Sum_probs=4.5
Q ss_pred cEEEcccCcCC
Q 042065 123 TGLDLSSNNFS 133 (179)
Q Consensus 123 ~~L~L~~n~l~ 133 (179)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444444
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.29 E-value=0.0019 Score=30.11 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.4
Q ss_pred cCCEeecccccCcccCchhhcCC
Q 042065 145 YLNSLKLDHNRFSGQIPPQLGQL 167 (179)
Q Consensus 145 ~L~~L~l~~n~l~g~~p~~~~~l 167 (179)
+|++|++++|+++ .+|..|+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5899999999999 899887653
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00073 Score=52.73 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=5.6
Q ss_pred CCCCcEEEcccCCC
Q 042065 94 CSSMTGLDLSSNKL 107 (179)
Q Consensus 94 l~~L~~L~L~~n~l 107 (179)
++.|+.|+++.|++
T Consensus 96 lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 96 LPALTTLNLSCNSL 109 (418)
T ss_pred CccceEeeccCCcC
Confidence 33344444444433
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0013 Score=51.37 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=4.6
Q ss_pred CccCCEeeccc
Q 042065 143 CSYLNSLKLDH 153 (179)
Q Consensus 143 l~~L~~L~l~~ 153 (179)
+++|.+|+|++
T Consensus 312 cp~l~~LDLSD 322 (419)
T KOG2120|consen 312 CPNLVHLDLSD 322 (419)
T ss_pred CCceeeecccc
Confidence 33444444443
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.75 E-value=0.0003 Score=53.06 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=71.7
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..+++.||++.|.+. ..-..|..++.+..||++.|.+. .+|..+.+ ...++.+++..|.++ ..|.+++..+.++.+
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 568999999998876 44556777888999999999997 89999988 788888888888888 789999999999999
Q ss_pred ecccccCc
Q 042065 150 KLDHNRFS 157 (179)
Q Consensus 150 ~l~~n~l~ 157 (179)
++-.|.|.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99988876
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.61 E-value=0.00036 Score=52.61 Aligned_cols=85 Identities=27% Similarity=0.250 Sum_probs=71.8
Q ss_pred cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCC
Q 042065 90 GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGR 169 (179)
Q Consensus 90 ~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~ 169 (179)
++..+...+.||++.|++. .+-..+.. +..++.|+++.|.+. .+|..++....+.++++..|..+ ..|.+++..+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~-~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSI-LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHH-HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 4566788999999999876 44445555 778999999999998 88999999999999999999988 89999999999
Q ss_pred CCeEeccCC
Q 042065 170 LKSFSVANN 178 (179)
Q Consensus 170 L~~L~l~~N 178 (179)
++++++-+|
T Consensus 113 ~k~~e~k~~ 121 (326)
T KOG0473|consen 113 PKKNEQKKT 121 (326)
T ss_pred cchhhhccC
Confidence 988887654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.0017 Score=50.28 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=61.6
Q ss_pred CCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCch--hhcCCCCCC
Q 042065 94 CSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPP--QLGQLGRLK 171 (179)
Q Consensus 94 l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~ 171 (179)
+...+.|++=++.++ .| ++...|+.|++|.|+-|.++ .+ ..+..|++|+.|.|..|.|. .+-+ .+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 456778888888887 44 34444999999999999999 44 34778999999999999997 4432 356889999
Q ss_pred eEeccCC
Q 042065 172 SFSVANN 178 (179)
Q Consensus 172 ~L~l~~N 178 (179)
.|.|..|
T Consensus 92 ~LWL~EN 98 (388)
T KOG2123|consen 92 TLWLDEN 98 (388)
T ss_pred hHhhccC
Confidence 9888766
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.19 E-value=0.086 Score=35.43 Aligned_cols=98 Identities=17% Similarity=0.364 Sum_probs=45.5
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
+++.+.+.. .+...-...|.+++.|+.+++..+ +. .++...+..++.++.+.+.. .+...-...+..+++++.+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 466677664 444344556777777888887764 54 55554444355677777765 333122234556777777777
Q ss_pred ccccCcccCc-hhhcCCCCCCeEecc
Q 042065 152 DHNRFSGQIP-PQLGQLGRLKSFSVA 176 (179)
Q Consensus 152 ~~n~l~g~~p-~~~~~l~~L~~L~l~ 176 (179)
..+ +. .++ ..+... .|+.+.+.
T Consensus 89 ~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 89 PSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTT--B-EEHTTTTTT--T--EEE-T
T ss_pred Ccc-cc-EEchhhhcCC-CceEEEEC
Confidence 654 33 232 234443 56655554
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.13 E-value=0.013 Score=25.37 Aligned_cols=13 Identities=46% Similarity=0.687 Sum_probs=4.7
Q ss_pred CCcEEEcccCCCC
Q 042065 96 SMTGLDLSSNKLY 108 (179)
Q Consensus 96 ~L~~L~L~~n~l~ 108 (179)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555554443
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.73 E-value=0.032 Score=26.82 Aligned_cols=20 Identities=45% Similarity=0.645 Sum_probs=11.7
Q ss_pred CCCcEEEcccCCCCCCChhHH
Q 042065 95 SSMTGLDLSSNKLYGSLPDDI 115 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g~~p~~~ 115 (179)
++|+.|+|++|.+. .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45666666666665 555543
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.73 E-value=0.032 Score=26.82 Aligned_cols=20 Identities=45% Similarity=0.645 Sum_probs=11.7
Q ss_pred CCCcEEEcccCCCCCCChhHH
Q 042065 95 SSMTGLDLSSNKLYGSLPDDI 115 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g~~p~~~ 115 (179)
++|+.|+|++|.+. .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45666666666665 555543
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.002 Score=50.36 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=25.5
Q ss_pred CcEEEEEecCCCceee-CCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEccc
Q 042065 71 NKVLNLRLTDMGLKGQ-FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSS 129 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~ 129 (179)
++++.|||+...++.. +..-+..+..|+.|.+-++.+...+-..+.. -..|+.++|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm 243 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSM 243 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeecccc
Confidence 3456666665554411 1122233444444455555444444444443 33444444443
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.039 Score=43.41 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=55.0
Q ss_pred CcccceeeecCCCCCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcC
Q 042065 57 ICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNF 132 (179)
Q Consensus 57 ~c~w~gv~c~~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l 132 (179)
...|..+.|.-...++++.|+++.|.+...+...-..+.+|+.|-|.+..+......++...+|.+++|-++.|++
T Consensus 83 iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 83 ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 4578888887666789999999999987544332245678889999888887666555544477777777777643
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.27 E-value=0.034 Score=43.23 Aligned_cols=106 Identities=22% Similarity=0.346 Sum_probs=69.3
Q ss_pred CcEEEEEecCCCceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHH-------HhcccCccEEEcccCcCCcc
Q 042065 71 NKVLNLRLTDMGLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDI-------SKLVGFLTGLDLSSNNFSGS 135 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~-------~~~l~~L~~L~L~~n~l~g~ 135 (179)
..++.++|+||-+... +...+.+-.+|+..+++.-. +|. +|+++ .. +|+|+..+|+.|.+.-.
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcc
Confidence 4578889999877532 34455666778888877643 333 33332 23 68899999999988866
Q ss_pred cchh----ccCCccCCEeecccccCcccCch-hhc-------------CCCCCCeEeccCCC
Q 042065 136 IPTN----LANCSYLNSLKLDHNRFSGQIPP-QLG-------------QLGRLKSFSVANNL 179 (179)
Q Consensus 136 ~p~~----~~~l~~L~~L~l~~n~l~g~~p~-~~~-------------~l~~L~~L~l~~N~ 179 (179)
.|+. +..-+.|.+|.+++|.+. ++.. -++ +-|.|+.++.+.|+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 6654 445577889999888775 3321 121 34677777777774
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.17 E-value=0.16 Score=39.63 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=6.7
Q ss_pred CCCCCCeEeccCC
Q 042065 166 QLGRLKSFSVANN 178 (179)
Q Consensus 166 ~l~~L~~L~l~~N 178 (179)
.+.+|+.||+..|
T Consensus 212 y~~~LevLDlqDN 224 (388)
T COG5238 212 YSHSLEVLDLQDN 224 (388)
T ss_pred HhCcceeeecccc
Confidence 3455555555554
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.35 E-value=0.083 Score=25.29 Aligned_cols=19 Identities=37% Similarity=0.709 Sum_probs=10.4
Q ss_pred ccCCEeecccccCcccCchh
Q 042065 144 SYLNSLKLDHNRFSGQIPPQ 163 (179)
Q Consensus 144 ~~L~~L~l~~n~l~g~~p~~ 163 (179)
++|+.|++++|+++ .+|+.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45555666666555 44443
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.35 E-value=0.083 Score=25.29 Aligned_cols=19 Identities=37% Similarity=0.709 Sum_probs=10.4
Q ss_pred ccCCEeecccccCcccCchh
Q 042065 144 SYLNSLKLDHNRFSGQIPPQ 163 (179)
Q Consensus 144 ~~L~~L~l~~n~l~g~~p~~ 163 (179)
++|+.|++++|+++ .+|+.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45555666666555 44443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.47 E-value=0.29 Score=32.82 Aligned_cols=93 Identities=16% Similarity=0.293 Sum_probs=47.3
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
+++.+.+.++ +...-...|.+++.|+.+.+.. .+. .++...+..++.|+.+++..+ +...-...+.++ .++.+.+
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred cccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 5788888774 5544456788888899999976 444 455554443788999999765 552233456666 8888888
Q ss_pred ccccCcccCchhhcCCCCC
Q 042065 152 DHNRFSGQIPPQLGQLGRL 170 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L 170 (179)
.. .+...-...|.++++|
T Consensus 111 ~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 111 PS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-B-SS----GGG-----
T ss_pred CC-CccEECCccccccccC
Confidence 75 3331223445565555
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=0.041 Score=40.73 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=54.5
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCC-CChhHHHhcccCccEEEcccCc-CCcccchhccCCccCCEe
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG-SLPDDISKLVGFLTGLDLSSNN-FSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g-~~p~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~L 149 (179)
.|+.++-++..+..+--..+.+++.++.|.+.++.--+ ..-+.+.+..++|+.|++++|. ++..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 58888888888775545567777788888887774321 2223344457889999999775 443223456677788877
Q ss_pred eccc
Q 042065 150 KLDH 153 (179)
Q Consensus 150 ~l~~ 153 (179)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.76 E-value=0.11 Score=24.33 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=5.2
Q ss_pred CCcEEEcccCCCC
Q 042065 96 SMTGLDLSSNKLY 108 (179)
Q Consensus 96 ~L~~L~L~~n~l~ 108 (179)
+|+.|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444555544443
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.91 E-value=0.69 Score=22.38 Aligned_cols=16 Identities=50% Similarity=0.762 Sum_probs=8.0
Q ss_pred CCcEEEcccCCCCCCCh
Q 042065 96 SMTGLDLSSNKLYGSLP 112 (179)
Q Consensus 96 ~L~~L~L~~n~l~g~~p 112 (179)
+|+.|+.++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 3455555555554 444
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.81 E-value=1.8 Score=21.09 Aligned_cols=14 Identities=57% Similarity=0.648 Sum_probs=9.1
Q ss_pred CCCcEEEcccCCCC
Q 042065 95 SSMTGLDLSSNKLY 108 (179)
Q Consensus 95 ~~L~~L~L~~n~l~ 108 (179)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35667777777664
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.20 E-value=2.5 Score=20.36 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=6.3
Q ss_pred CccEEEcccCcCC
Q 042065 121 FLTGLDLSSNNFS 133 (179)
Q Consensus 121 ~L~~L~L~~n~l~ 133 (179)
+|+.|+++.|.++
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3445555555443
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.52 E-value=1.8 Score=35.62 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=15.9
Q ss_pred CCCCcEEEcccCC-CCCCChhHHHhcccCccEEEcccCc
Q 042065 94 CSSMTGLDLSSNK-LYGSLPDDISKLVGFLTGLDLSSNN 131 (179)
Q Consensus 94 l~~L~~L~L~~n~-l~g~~p~~~~~~l~~L~~L~L~~n~ 131 (179)
++.|+.|+++... ++...-..+...++.|+.|.+.++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 3445555555444 3322222222224455555544443
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=72.80 E-value=3.1 Score=34.24 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=50.0
Q ss_pred CcCCCCCcEEEcccC-CCCCCCh---hHHHhcccCccEEEcccCc-CCcccchhcc-CCccCCEeeccccc-Cccc-Cch
Q 042065 91 IRNCSSMTGLDLSSN-KLYGSLP---DDISKLVGFLTGLDLSSNN-FSGSIPTNLA-NCSYLNSLKLDHNR-FSGQ-IPP 162 (179)
Q Consensus 91 l~~l~~L~~L~L~~n-~l~g~~p---~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~-~l~~L~~L~l~~n~-l~g~-~p~ 162 (179)
...++.|+.|+++.+ ......+ ..+...+..|+.+++..+. ++...-..+. .+++|+.|.+.... ++.. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 445677888888762 1111111 2233446778888888777 4422222232 37788888866554 4411 112
Q ss_pred hhcCCCCCCeEeccCC
Q 042065 163 QLGQLGRLKSFSVANN 178 (179)
Q Consensus 163 ~~~~l~~L~~L~l~~N 178 (179)
-...++.|++|+++.+
T Consensus 290 i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGC 305 (482)
T ss_pred HHHhcCcccEEeeecC
Confidence 2335677888888765
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.43 E-value=3.2 Score=35.39 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=6.1
Q ss_pred CcEEEEEecCCCc
Q 042065 71 NKVLNLRLTDMGL 83 (179)
Q Consensus 71 ~~l~~L~l~~~~l 83 (179)
+.|..+.|++|++
T Consensus 218 p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 218 PEILSLSLSNNRL 230 (585)
T ss_pred cceeeeecccchh
Confidence 3444445555443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.23 E-value=1 Score=33.53 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=50.4
Q ss_pred CCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcc-cchhcc-CCccCCEeecccc-cCcccCchhhcCCCCCCe
Q 042065 96 SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS-IPTNLA-NCSYLNSLKLDHN-RFSGQIPPQLGQLGRLKS 172 (179)
Q Consensus 96 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~-~p~~~~-~l~~L~~L~l~~n-~l~g~~p~~~~~l~~L~~ 172 (179)
.++.+|-++..+...=-+.+.. ++.++.|.+.++.-.+. --+.++ -.++|+.|++++| .|+..=-..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3678888888776444456666 77888888887764421 111222 3478999999977 666222234556677776
Q ss_pred Eecc
Q 042065 173 FSVA 176 (179)
Q Consensus 173 L~l~ 176 (179)
|++.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 6654
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.72 E-value=22 Score=16.56 Aligned_cols=11 Identities=9% Similarity=0.292 Sum_probs=5.4
Q ss_pred CCCCeEeccCC
Q 042065 168 GRLKSFSVANN 178 (179)
Q Consensus 168 ~~L~~L~l~~N 178 (179)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555543
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.98 E-value=22 Score=36.37 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=25.7
Q ss_pred EecCCCceeeCCccCcCCCCCcEEEcccCCCCC
Q 042065 77 RLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG 109 (179)
Q Consensus 77 ~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g 109 (179)
+|++|.|...-+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 477888885555668888899999999998763
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.55 E-value=20 Score=30.84 Aligned_cols=64 Identities=34% Similarity=0.438 Sum_probs=41.2
Q ss_pred CCCCCcEEEcccCCCCCCCh--hHHHhcccCccEEEcccC--cCCcccchhcc--CCccCCEeecccccCccc
Q 042065 93 NCSSMTGLDLSSNKLYGSLP--DDISKLVGFLTGLDLSSN--NFSGSIPTNLA--NCSYLNSLKLDHNRFSGQ 159 (179)
Q Consensus 93 ~l~~L~~L~L~~n~l~g~~p--~~~~~~l~~L~~L~L~~n--~l~g~~p~~~~--~l~~L~~L~l~~n~l~g~ 159 (179)
+.+.+..+.|++|++. .+. .++.+..|.|..|+|++| .+. ..+ ++. ....|+.|.+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS-SES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc-chh-hhhhhcCCCHHHeeecCCccccc
Confidence 4566778888998875 332 344445788999999988 333 111 222 234578888888888643
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.02 E-value=38 Score=34.86 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=16.0
Q ss_pred EcccCCCCCCChhHHHhcccCccEEEcccCcC
Q 042065 101 DLSSNKLYGSLPDDISKLVGFLTGLDLSSNNF 132 (179)
Q Consensus 101 ~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l 132 (179)
||++|+|+ .+|...++.+++|+.|+|.+|.+
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcc
Confidence 34555555 55544444355555555555544
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.37 E-value=3.5 Score=34.82 Aligned_cols=107 Identities=24% Similarity=0.275 Sum_probs=56.9
Q ss_pred CcEEEEEecCCCcee----eCCcc----CcCCCCCcEEEcccCCCCCCC----hhHHHhcccC-ccEEEcccCcCCcc--
Q 042065 71 NKVLNLRLTDMGLKG----QFPRG----IRNCSSMTGLDLSSNKLYGSL----PDDISKLVGF-LTGLDLSSNNFSGS-- 135 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~----~~p~~----l~~l~~L~~L~L~~n~l~g~~----p~~~~~~l~~-L~~L~L~~n~l~g~-- 135 (179)
..++.++++.|.+.. .++.. +....+++.|+++++.++... -..+.. .+. +..+++..|.+...
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~-~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLAS-GESLLRELDLASNKLGDVGV 250 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhc-cchhhHHHHHHhcCcchHHH
Confidence 446666777766531 11222 234567777888877765211 111222 223 55577777766521
Q ss_pred --cchhccCC-ccCCEeecccccCccc----CchhhcCCCCCCeEeccCC
Q 042065 136 --IPTNLANC-SYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 136 --~p~~~~~l-~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N 178 (179)
+.+.+..+ ..++++++..|.++.. ++..+..+++++.+.+.+|
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 22334444 5667777777777632 2334445566666666665
Done!