Query 042065
Match_columns 179
No_of_seqs 209 out of 3142
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 03:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 6.1E-26 2.1E-30 177.2 13.6 153 20-179 2-160 (313)
2 4eco_A Uncharacterized protein 99.9 2E-23 6.9E-28 177.0 11.9 152 20-179 26-284 (636)
3 3rgz_A Protein brassinosteroid 99.9 6.3E-23 2.1E-27 177.1 11.5 151 18-178 6-188 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 6.6E-23 2.3E-27 178.8 11.2 151 20-179 265-526 (876)
5 4fcg_A Uncharacterized protein 99.8 1.6E-21 5.6E-26 153.1 2.4 155 19-178 22-193 (328)
6 1w8a_A SLIT protein; signaling 99.8 2.5E-18 8.5E-23 125.2 10.1 125 54-179 4-137 (192)
7 3e6j_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 127.7 10.8 123 54-179 15-146 (229)
8 2v9t_B SLIT homolog 2 protein 99.7 1.8E-17 6E-22 123.2 11.4 123 54-178 7-138 (220)
9 2o6r_A Variable lymphocyte rec 99.7 2.2E-17 7.4E-22 118.4 11.2 124 54-179 3-135 (177)
10 2o6s_A Variable lymphocyte rec 99.7 2.9E-17 9.8E-22 120.6 11.2 123 55-179 4-135 (208)
11 2wfh_A SLIT homolog 2 protein 99.7 5E-17 1.7E-21 118.5 11.1 124 54-179 6-137 (193)
12 2v70_A SLIT-2, SLIT homolog 2 99.7 8E-17 2.7E-21 119.6 12.4 108 71-179 57-164 (220)
13 4g8a_A TOLL-like receptor 4; l 99.7 2.1E-16 7.3E-21 132.3 10.5 108 71-179 52-159 (635)
14 1ogq_A PGIP-2, polygalacturona 99.7 7.9E-17 2.7E-21 125.5 6.1 108 71-179 76-185 (313)
15 2v9t_B SLIT homolog 2 protein 99.7 5E-16 1.7E-20 115.3 10.1 109 70-179 55-163 (220)
16 2o6q_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 118.7 9.6 107 71-178 37-143 (270)
17 3m19_A Variable lymphocyte rec 99.6 1.1E-15 3.7E-20 115.4 11.2 108 71-179 59-166 (251)
18 3rgz_A Protein brassinosteroid 99.6 2.7E-16 9.2E-21 135.8 8.1 98 80-178 617-714 (768)
19 2xot_A Amphoterin-induced prot 99.6 1.9E-15 6.4E-20 119.9 10.9 124 54-178 14-146 (361)
20 2z81_A CD282 antigen, TOLL-lik 99.6 9.7E-16 3.3E-20 127.0 8.9 107 71-178 26-133 (549)
21 4fcg_A Uncharacterized protein 99.6 1.1E-15 3.8E-20 119.9 8.7 104 72-178 184-287 (328)
22 2je0_A Acidic leucine-rich nuc 99.6 8.7E-16 3E-20 107.0 6.4 105 70-177 41-149 (149)
23 3m19_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 112.1 10.0 108 70-179 82-190 (251)
24 2v70_A SLIT-2, SLIT homolog 2 99.6 3.4E-15 1.2E-19 110.8 8.9 126 53-179 6-140 (220)
25 3e6j_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 110.4 9.8 107 70-179 63-170 (229)
26 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.6E-20 107.6 6.7 105 70-179 48-158 (168)
27 3v47_A TOLL-like receptor 5B a 99.6 2.8E-15 9.5E-20 121.6 8.7 107 71-178 30-139 (455)
28 3g39_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 105.0 9.3 99 76-178 14-112 (170)
29 2z80_A TOLL-like receptor 2, v 99.6 4.9E-15 1.7E-19 116.8 9.0 121 55-178 27-159 (353)
30 2z66_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 114.4 8.8 123 54-178 3-136 (306)
31 3vq2_A TLR4, TOLL-like recepto 99.6 8.2E-15 2.8E-19 122.9 10.6 106 72-178 57-163 (606)
32 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4.2E-19 103.0 9.9 106 70-179 23-131 (168)
33 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 106.8 9.8 108 70-179 51-159 (208)
34 1ozn_A Reticulon 4 receptor; N 99.6 1.4E-14 4.8E-19 111.0 10.8 108 71-179 56-164 (285)
35 2id5_A Lingo-1, leucine rich r 99.6 1.1E-14 3.7E-19 119.0 10.7 106 72-178 33-138 (477)
36 4ezg_A Putative uncharacterize 99.6 1.1E-14 3.7E-19 106.1 9.0 105 70-179 87-192 (197)
37 3rfs_A Internalin B, repeat mo 99.6 1.4E-14 4.7E-19 110.6 10.0 106 72-178 110-215 (272)
38 2r9u_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 103.1 10.1 101 74-179 15-116 (174)
39 2ft3_A Biglycan; proteoglycan, 99.6 2.2E-14 7.6E-19 112.2 11.2 122 54-179 29-158 (332)
40 3rfs_A Internalin B, repeat mo 99.6 1.5E-14 5.2E-19 110.3 10.0 109 70-179 84-192 (272)
41 2je0_A Acidic leucine-rich nuc 99.6 1.6E-14 5.4E-19 100.5 8.8 106 71-179 17-124 (149)
42 3zyi_A Leucine-rich repeat-con 99.5 2.7E-14 9.4E-19 116.2 11.1 123 55-178 49-181 (452)
43 2z62_A TOLL-like receptor 4, v 99.5 2.7E-14 9.4E-19 108.9 10.1 108 71-179 52-160 (276)
44 3t6q_A CD180 antigen; protein- 99.5 1.9E-14 6.4E-19 120.7 10.0 108 71-179 33-140 (606)
45 3v47_A TOLL-like receptor 5B a 99.5 1.6E-14 5.4E-19 117.2 9.2 108 71-179 299-406 (455)
46 1wwl_A Monocyte differentiatio 99.5 1.2E-14 4E-19 113.1 7.8 107 71-179 95-212 (312)
47 1ozn_A Reticulon 4 receptor; N 99.5 3E-14 1E-18 109.2 9.4 105 73-178 107-211 (285)
48 1xku_A Decorin; proteoglycan, 99.5 5.9E-14 2E-18 109.6 11.3 120 55-178 28-155 (330)
49 1dce_A Protein (RAB geranylger 99.5 1.8E-14 6.3E-19 120.7 8.8 102 72-179 442-544 (567)
50 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.9E-19 125.1 7.7 104 71-179 224-327 (727)
51 4eco_A Uncharacterized protein 99.5 7.3E-15 2.5E-19 124.5 6.5 108 70-179 205-341 (636)
52 3vq2_A TLR4, TOLL-like recepto 99.5 3.1E-14 1.1E-18 119.3 10.2 108 71-179 32-139 (606)
53 2xot_A Amphoterin-induced prot 99.5 2.8E-14 9.7E-19 113.1 9.2 108 70-179 63-174 (361)
54 2z62_A TOLL-like receptor 4, v 99.5 3.6E-14 1.2E-18 108.2 9.3 106 72-178 77-187 (276)
55 1ziw_A TOLL-like receptor 3; i 99.5 5.2E-14 1.8E-18 119.5 11.1 106 71-178 25-131 (680)
56 1w8a_A SLIT protein; signaling 99.5 5.3E-14 1.8E-18 102.2 9.4 102 74-179 11-113 (192)
57 2wfh_A SLIT homolog 2 protein 99.5 4.6E-14 1.6E-18 102.7 9.1 101 74-179 13-113 (193)
58 3zyj_A Leucine-rich repeat-con 99.5 9.5E-14 3.3E-18 112.6 11.8 123 55-178 38-170 (440)
59 3j0a_A TOLL-like receptor 5; m 99.5 2.6E-14 8.9E-19 124.6 8.9 107 71-178 24-133 (844)
60 3g39_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 100.4 8.8 104 54-159 5-117 (170)
61 4g8a_A TOLL-like receptor 4; l 99.5 5E-14 1.7E-18 118.0 10.0 108 70-179 75-184 (635)
62 2z66_A Variable lymphocyte rec 99.5 4.2E-14 1.4E-18 109.3 8.6 108 71-179 150-259 (306)
63 1a9n_A U2A', U2A'; complex (nu 99.5 4.5E-14 1.5E-18 101.0 8.1 103 71-179 42-151 (176)
64 4ezg_A Putative uncharacterize 99.5 6E-14 2E-18 102.1 8.8 104 71-179 66-170 (197)
65 2o6q_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 105.9 10.0 60 119-178 156-215 (270)
66 1p9a_G Platelet glycoprotein I 99.5 8E-14 2.7E-18 107.5 9.7 102 73-178 102-205 (290)
67 2ifg_A High affinity nerve gro 99.5 7.7E-14 2.6E-18 109.7 9.7 106 57-179 7-114 (347)
68 4b8c_D Glucose-repressible alc 99.5 1.2E-14 3.9E-19 125.1 4.6 150 20-179 128-304 (727)
69 1p9a_G Platelet glycoprotein I 99.5 1.2E-13 4.2E-18 106.4 10.0 107 70-179 76-183 (290)
70 2z7x_B TOLL-like receptor 1, v 99.5 2.2E-14 7.6E-19 118.3 6.1 105 71-179 21-126 (520)
71 4ecn_A Leucine-rich repeat pro 99.5 2.5E-14 8.7E-19 124.9 6.5 108 70-179 447-584 (876)
72 3oja_B Anopheles plasmodium-re 99.5 1.3E-13 4.5E-18 115.9 10.1 107 71-179 75-182 (597)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 7.4E-14 2.5E-18 116.4 8.1 105 71-179 52-157 (562)
74 3o6n_A APL1; leucine-rich repe 99.5 1.9E-13 6.5E-18 109.0 10.1 107 71-179 69-176 (390)
75 2xwt_C Thyrotropin receptor; s 99.5 1.5E-13 5E-18 102.8 7.9 104 71-178 31-140 (239)
76 2id5_A Lingo-1, leucine rich r 99.5 1.8E-13 6.1E-18 111.8 8.9 108 70-179 55-163 (477)
77 2z63_A TOLL-like receptor 4, v 99.5 9.7E-14 3.3E-18 115.3 7.2 108 71-179 421-529 (570)
78 3oja_A Leucine-rich immune mol 99.5 1.6E-13 5.3E-18 113.0 8.3 116 58-178 109-224 (487)
79 2z81_A CD282 antigen, TOLL-lik 99.4 2E-13 6.9E-18 113.1 8.7 109 70-179 49-159 (549)
80 2z63_A TOLL-like receptor 4, v 99.4 2.7E-13 9.3E-18 112.6 9.4 108 71-179 52-160 (570)
81 3oja_B Anopheles plasmodium-re 99.4 2.1E-13 7E-18 114.7 8.0 107 71-179 51-158 (597)
82 2r9u_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 94.6 9.7 102 55-158 9-119 (174)
83 1a9n_A U2A', U2A'; complex (nu 99.4 2.1E-13 7.1E-18 97.6 6.6 102 71-179 19-124 (176)
84 2z80_A TOLL-like receptor 2, v 99.4 5.2E-13 1.8E-17 105.2 8.9 107 70-179 75-185 (353)
85 2z7x_B TOLL-like receptor 1, v 99.4 4.9E-13 1.7E-17 110.2 9.0 108 70-178 323-454 (520)
86 1ziw_A TOLL-like receptor 3; i 99.4 3E-13 1E-17 114.8 7.7 106 71-178 49-155 (680)
87 3t6q_A CD180 antigen; protein- 99.4 5.2E-13 1.8E-17 111.9 8.9 108 71-179 57-164 (606)
88 2o6r_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 93.1 10.0 103 73-179 9-111 (177)
89 1wwl_A Monocyte differentiatio 99.4 2.7E-13 9.3E-18 105.3 6.6 108 71-179 149-264 (312)
90 3j0a_A TOLL-like receptor 5; m 99.4 4.6E-13 1.6E-17 116.7 8.2 109 70-179 47-159 (844)
91 4glp_A Monocyte differentiatio 99.4 3.2E-13 1.1E-17 104.7 6.5 107 72-179 92-208 (310)
92 3o53_A Protein LRIM1, AGAP0063 99.4 8.6E-13 3E-17 102.7 8.6 102 73-179 146-248 (317)
93 3o53_A Protein LRIM1, AGAP0063 99.4 5.2E-13 1.8E-17 103.9 7.2 107 70-179 119-225 (317)
94 3zyj_A Leucine-rich repeat-con 99.4 9.2E-13 3.2E-17 106.8 8.7 104 72-178 186-289 (440)
95 3zyi_A Leucine-rich repeat-con 99.4 9.8E-13 3.4E-17 107.0 8.8 104 72-178 197-300 (452)
96 4glp_A Monocyte differentiatio 99.4 2.3E-13 7.9E-18 105.6 4.2 104 71-178 145-282 (310)
97 1dce_A Protein (RAB geranylger 99.4 1.2E-12 4E-17 109.7 8.6 101 71-175 463-567 (567)
98 1xku_A Decorin; proteoglycan, 99.4 2.2E-12 7.6E-17 100.6 9.4 85 71-157 192-276 (330)
99 2xwt_C Thyrotropin receptor; s 99.4 9.2E-13 3.2E-17 98.4 6.5 105 71-179 55-167 (239)
100 3oja_A Leucine-rich immune mol 99.4 1.1E-12 3.7E-17 108.0 7.2 104 71-179 144-248 (487)
101 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.5E-12 5E-17 108.6 7.9 108 70-179 352-484 (562)
102 3o6n_A APL1; leucine-rich repe 99.3 1.4E-12 4.9E-17 103.9 7.0 107 71-179 45-152 (390)
103 1ds9_A Outer arm dynein; leuci 99.3 5.4E-14 1.9E-18 102.4 -1.4 102 71-179 48-151 (198)
104 2ft3_A Biglycan; proteoglycan, 99.3 2E-12 6.8E-17 101.1 6.9 84 72-157 194-277 (332)
105 1h6u_A Internalin H; cell adhe 99.3 7.2E-12 2.5E-16 97.2 9.3 100 71-179 85-184 (308)
106 1xeu_A Internalin C; cellular 99.3 8.2E-12 2.8E-16 94.9 9.4 99 71-179 63-161 (263)
107 4ay9_X Follicle-stimulating ho 99.3 4E-12 1.4E-16 100.3 7.5 121 56-176 7-136 (350)
108 1xeu_A Internalin C; cellular 99.3 6.2E-12 2.1E-16 95.6 8.3 99 70-178 84-182 (263)
109 4fmz_A Internalin; leucine ric 99.3 6.5E-12 2.2E-16 98.4 8.6 102 71-179 243-344 (347)
110 1h6u_A Internalin H; cell adhe 99.3 1.1E-11 3.8E-16 96.1 9.6 100 71-179 107-206 (308)
111 1h6t_A Internalin B; cell adhe 99.3 9.6E-12 3.3E-16 95.8 9.1 100 71-179 90-189 (291)
112 1h6t_A Internalin B; cell adhe 99.3 1.6E-11 5.5E-16 94.6 10.0 99 71-178 68-166 (291)
113 3cvr_A Invasion plasmid antige 99.3 2.6E-12 9E-17 107.6 5.6 101 59-178 49-150 (571)
114 1ds9_A Outer arm dynein; leuci 99.3 2.6E-14 8.7E-19 104.2 -6.6 102 72-179 19-126 (198)
115 1m9s_A Internalin B; cell inva 99.2 3.3E-11 1.1E-15 101.7 10.4 99 71-178 87-185 (605)
116 4fmz_A Internalin; leucine ric 99.2 2.5E-11 8.4E-16 95.1 8.8 102 71-179 221-322 (347)
117 2ast_B S-phase kinase-associat 99.2 1.1E-12 3.9E-17 102.2 1.0 37 93-130 116-152 (336)
118 2ast_B S-phase kinase-associat 99.2 4.3E-12 1.5E-16 98.9 4.0 106 71-178 70-178 (336)
119 3bz5_A Internalin-J, INLJ; leu 99.2 3.3E-11 1.1E-15 98.4 8.5 95 71-178 64-158 (457)
120 1m9s_A Internalin B; cell inva 99.2 4E-11 1.4E-15 101.2 8.9 101 70-179 108-208 (605)
121 2ca6_A RAN GTPase-activating p 99.2 4.4E-12 1.5E-16 101.0 2.0 108 71-179 187-314 (386)
122 1o6v_A Internalin A; bacterial 99.2 5.2E-11 1.8E-15 97.2 8.0 101 71-178 265-385 (466)
123 1o6v_A Internalin A; bacterial 99.2 9.6E-11 3.3E-15 95.6 9.3 100 71-179 243-342 (466)
124 2ifg_A High affinity nerve gro 99.2 5.9E-11 2E-15 93.1 7.1 85 71-157 31-116 (347)
125 3cvr_A Invasion plasmid antige 99.1 5.9E-11 2E-15 99.5 7.2 94 72-179 121-241 (571)
126 3goz_A Leucine-rich repeat-con 99.1 2E-11 7E-16 96.5 4.1 108 72-179 52-178 (362)
127 2ca6_A RAN GTPase-activating p 99.1 1.8E-11 6.3E-16 97.4 2.6 83 95-178 159-254 (386)
128 1jl5_A Outer protein YOPM; leu 99.1 2.9E-10 9.9E-15 92.8 9.2 78 71-157 131-208 (454)
129 3bz5_A Internalin-J, INLJ; leu 99.1 3.6E-10 1.2E-14 92.3 9.0 77 92-178 167-243 (457)
130 3goz_A Leucine-rich repeat-con 99.1 5.6E-11 1.9E-15 94.0 3.7 108 71-179 22-149 (362)
131 3g06_A SSPH2 (leucine-rich rep 99.1 3.7E-10 1.3E-14 95.5 8.5 75 95-179 221-295 (622)
132 4ay9_X Follicle-stimulating ho 99.0 3.9E-10 1.3E-14 88.8 6.4 101 74-179 12-115 (350)
133 1jl5_A Outer protein YOPM; leu 99.0 3.5E-10 1.2E-14 92.3 5.9 76 95-179 317-407 (454)
134 1z7x_W Ribonuclease inhibitor; 99.0 6.5E-11 2.2E-15 95.9 0.6 83 96-179 314-409 (461)
135 1z7x_W Ribonuclease inhibitor; 98.9 1.4E-10 4.8E-15 93.9 0.8 107 72-178 257-380 (461)
136 3g06_A SSPH2 (leucine-rich rep 98.9 3.3E-09 1.1E-13 89.8 8.7 92 71-179 61-152 (622)
137 3un9_A NLR family member X1; l 98.8 2.4E-09 8.1E-14 85.3 2.8 83 95-178 155-249 (372)
138 3rw6_A Nuclear RNA export fact 98.8 1.8E-08 6.1E-13 76.7 7.1 80 93-175 168-258 (267)
139 3un9_A NLR family member X1; l 98.7 1.9E-09 6.5E-14 85.9 -0.4 109 71-179 101-222 (372)
140 3ogk_B Coronatine-insensitive 98.7 5.2E-09 1.8E-13 87.2 2.0 89 91-179 432-524 (592)
141 1io0_A Tropomodulin; LRR prote 98.6 1.9E-08 6.7E-13 72.3 3.8 109 70-179 35-162 (185)
142 3sb4_A Hypothetical leucine ri 98.6 8.9E-08 3E-12 74.6 7.2 102 71-175 226-328 (329)
143 3ogk_B Coronatine-insensitive 98.5 2.9E-08 9.9E-13 82.7 2.8 19 160-178 285-303 (592)
144 2p1m_B Transport inhibitor res 98.4 4.9E-08 1.7E-12 81.3 0.6 88 91-179 428-517 (594)
145 3rw6_A Nuclear RNA export fact 98.4 2.2E-07 7.6E-12 70.7 3.8 78 71-151 170-258 (267)
146 2p1m_B Transport inhibitor res 98.3 1.2E-07 4.2E-12 78.9 1.3 107 71-178 105-221 (594)
147 1io0_A Tropomodulin; LRR prote 98.0 3.1E-06 1.1E-10 60.6 3.9 91 88-179 29-134 (185)
148 3sb4_A Hypothetical leucine ri 98.0 5.9E-06 2E-10 64.2 5.7 83 94-179 225-308 (329)
149 3e4g_A ATP synthase subunit S, 98.0 5.4E-06 1.9E-10 59.1 4.6 87 71-157 61-153 (176)
150 2ra8_A Uncharacterized protein 97.9 1.1E-06 3.7E-11 69.7 -0.6 55 71-128 172-227 (362)
151 3e4g_A ATP synthase subunit S, 97.9 1.2E-05 4.1E-10 57.3 4.4 83 95-178 61-149 (176)
152 2ra8_A Uncharacterized protein 97.8 2.5E-05 8.4E-10 61.9 6.0 108 71-179 193-318 (362)
153 4fdw_A Leucine rich hypothetic 97.4 0.00034 1.2E-08 56.0 7.1 102 72-178 249-355 (401)
154 4fdw_A Leucine rich hypothetic 97.4 0.00052 1.8E-08 54.9 7.9 54 72-128 158-211 (401)
155 3rfe_A Platelet glycoprotein I 97.2 0.00054 1.8E-08 46.1 4.9 56 75-133 12-68 (130)
156 3rfe_A Platelet glycoprotein I 97.1 0.00097 3.3E-08 44.9 5.2 37 72-108 32-68 (130)
157 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00094 3.2E-08 48.3 4.7 108 70-178 40-167 (197)
158 4gt6_A Cell surface protein; l 96.5 0.013 4.4E-07 46.4 8.7 84 89-178 282-367 (394)
159 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0036 1.2E-07 45.2 4.5 87 91-178 37-136 (197)
160 4h09_A Hypothetical leucine ri 96.2 0.015 5.2E-07 45.5 7.6 83 89-176 257-341 (379)
161 4fs7_A Uncharacterized protein 96.0 0.012 4.3E-07 46.4 6.0 82 90-176 292-374 (394)
162 4gt6_A Cell surface protein; l 95.8 0.019 6.6E-07 45.3 6.5 98 73-178 290-388 (394)
163 4fs7_A Uncharacterized protein 95.2 0.03 1E-06 44.2 5.5 95 73-173 299-393 (394)
164 4h09_A Hypothetical leucine ri 94.2 0.18 6.2E-06 39.2 7.7 86 89-178 234-320 (379)
165 2lz0_A Uncharacterized protein 27.3 1.1E+02 0.0038 18.7 4.6 40 88-129 13-52 (100)
166 3ox7_P MH027; urokinase-type p 23.7 18 0.00061 15.6 0.1 9 56-64 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=6.1e-26 Score=177.24 Aligned_cols=153 Identities=29% Similarity=0.450 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcc--cceeeecCCC-CCcEEEEEecCCCcee--eCCccCcCC
Q 042065 20 YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICK--FTGVECWHPD-ENKVLNLRLTDMGLKG--QFPRGIRNC 94 (179)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~--w~gv~c~~~~-~~~l~~L~l~~~~l~~--~~p~~l~~l 94 (179)
.|.++|.+||++||+++.+|. .+. +|..+ .++|. |.||+|.... .++|+.|+++++.+.+ .+|..+.++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~-~W~~~----~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLS-SWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGT-TCCTT----SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-ccc-CCCCC----CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCC
Confidence 477899999999999998776 566 99742 36777 9999997521 2689999999999998 899999999
Q ss_pred CCCcEEEccc-CCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeE
Q 042065 95 SSMTGLDLSS-NKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSF 173 (179)
Q Consensus 95 ~~L~~L~L~~-n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L 173 (179)
++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 9999999995 9999899999988 8999999999999998899999999999999999999998889999999999999
Q ss_pred eccCCC
Q 042065 174 SVANNL 179 (179)
Q Consensus 174 ~l~~N~ 179 (179)
++++|+
T Consensus 155 ~L~~N~ 160 (313)
T 1ogq_A 155 TFDGNR 160 (313)
T ss_dssp ECCSSC
T ss_pred ECcCCc
Confidence 998874
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=2e-23 Score=176.97 Aligned_cols=152 Identities=21% Similarity=0.266 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCCCC-------CCCCCCCCCCCCccc---ceeeecCCCCCcEEEEEecCCCceeeCCc
Q 042065 20 YGTKEDIACLKSIKDSLEDPFNYLNS-------SWNFNNDTEGFICKF---TGVECWHPDENKVLNLRLTDMGLKGQFPR 89 (179)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~-------~W~~~~~~~~~~c~w---~gv~c~~~~~~~l~~L~l~~~~l~~~~p~ 89 (179)
+....|+.||.+++.++.++.|.... +|+. +.++|.| .||+|.. .++|+.|+|+++++.|.+|+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~----~~~~c~w~~~~GV~C~~--~~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNS--NGRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC----SSCGGGTTCCTTEEECT--TCCEEEEECTTSCCEEEECG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC----CCCcccccCCCCeEEcC--CCCEEEEEecCcccCCcCCh
Confidence 33446899999999999877655332 5874 3578999 9999976 37999999999999999999
Q ss_pred cCcCCCCCcEEEcccCCC--------------------------------------------------------------
Q 042065 90 GIRNCSSMTGLDLSSNKL-------------------------------------------------------------- 107 (179)
Q Consensus 90 ~l~~l~~L~~L~L~~n~l-------------------------------------------------------------- 107 (179)
++.++++|++|+|++|.+
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 999999999999998843
Q ss_pred ----------------CCCChhHHHhcccCccEEEcccCcCCcc-----------------cchhcc--CCccCCEeecc
Q 042065 108 ----------------YGSLPDDISKLVGFLTGLDLSSNNFSGS-----------------IPTNLA--NCSYLNSLKLD 152 (179)
Q Consensus 108 ----------------~g~~p~~~~~~l~~L~~L~L~~n~l~g~-----------------~p~~~~--~l~~L~~L~l~ 152 (179)
+| +|..+.+ +++|++|+|++|.++|. +|..++ ++++|++|+++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 34 7888888 99999999999999985 999999 99999999999
Q ss_pred cccCcccCchhhcCCCCCCeEeccCCC
Q 042065 153 HNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|++.|.+|..++++++|++|++++|+
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCC
Confidence 999999999999999999999999984
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=6.3e-23 Score=177.15 Aligned_cols=151 Identities=28% Similarity=0.368 Sum_probs=122.3
Q ss_pred CccCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcccceeeecCCCCCcEEEEEecCCCceee---CC------
Q 042065 18 LRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQ---FP------ 88 (179)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~~~~l~~L~l~~~~l~~~---~p------ 88 (179)
+.+..++|+.||++||+++.+|. .+. +|.. +.++|.|.||+|. .++|+.|+++++.+.|. +|
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~-~W~~----~~~~C~w~gv~C~---~~~v~~L~L~~~~l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLP-DWSS----NKNPCTFDGVTCR---DDKVTSIDLSSKPLNVGFSAVSSSLLSL 76 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SST-TCCT----TSCGGGSTTEEEE---TTEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-ccc-CCCC----CCCCcCCcceEEC---CCcEEEEECCCCCcCCccCccChhHhcc
Confidence 33446789999999999999887 777 9973 3478999999997 37999999999998886 43
Q ss_pred -----------------ccCcCCCCCcEEEcccCCCCCCChh--HHHhcccCccEEEcccCcCCcccchhc-cCCccCCE
Q 042065 89 -----------------RGIRNCSSMTGLDLSSNKLYGSLPD--DISKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYLNS 148 (179)
Q Consensus 89 -----------------~~l~~l~~L~~L~L~~n~l~g~~p~--~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~ 148 (179)
..+..+++|++|+|++|.++|.+|. .+.. +++|++|++++|.+.+.+|..+ ..+++|++
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 4677788889999999998888887 7887 8889999999888888777765 67888888
Q ss_pred eecccccCcccCchh---hcCCCCCCeEeccCC
Q 042065 149 LKLDHNRFSGQIPPQ---LGQLGRLKSFSVANN 178 (179)
Q Consensus 149 L~l~~n~l~g~~p~~---~~~l~~L~~L~l~~N 178 (179)
|++++|++++..|.. +..+++|++|++++|
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 888888888777766 566777777777665
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=6.6e-23 Score=178.78 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=130.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC---CCCCCCccc------------ceeeecCCCCCcEEEEEecCCCce
Q 042065 20 YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNN---DTEGFICKF------------TGVECWHPDENKVLNLRLTDMGLK 84 (179)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~---~~~~~~c~w------------~gv~c~~~~~~~l~~L~l~~~~l~ 84 (179)
+....|+.||++||+++.+| +|+.+. ....+.|.| .||+|.. .++|+.|+|+++++.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~--~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT--TSCEEEEECTTTCCE
T ss_pred ccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC--CCCEEEEECccCCCC
Confidence 44567999999999999766 565432 112234999 9999986 579999999999999
Q ss_pred eeCCccCcCCCCCcEEEc-ccCCCCCC-----------------------------------------------------
Q 042065 85 GQFPRGIRNCSSMTGLDL-SSNKLYGS----------------------------------------------------- 110 (179)
Q Consensus 85 ~~~p~~l~~l~~L~~L~L-~~n~l~g~----------------------------------------------------- 110 (179)
|.+|+.+.++++|+.|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 77754433
Q ss_pred -----------------------ChhHHHhcccCccEEEcccCcCCc-----------------ccchhcc--CCccCCE
Q 042065 111 -----------------------LPDDISKLVGFLTGLDLSSNNFSG-----------------SIPTNLA--NCSYLNS 148 (179)
Q Consensus 111 -----------------------~p~~~~~~l~~L~~L~L~~n~l~g-----------------~~p~~~~--~l~~L~~ 148 (179)
+|..+.+ +++|+.|+|++|.++| .+|..++ .+++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccchhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 7888888 9999999999999998 3999988 9999999
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|++.+.+|..++.+++|+.|++++|+
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 9999999999999999999999999999984
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.6e-21 Score=153.12 Aligned_cols=155 Identities=20% Similarity=0.271 Sum_probs=101.0
Q ss_pred ccCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCCCCCcccceeeecC-------CCCCcEEEEEecCCCceeeCCcc
Q 042065 19 RYGTKEDIACLKSIKDSL-EDPFNYLNSSWNFNNDTEGFICKFTGVECWH-------PDENKVLNLRLTDMGLKGQFPRG 90 (179)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~-------~~~~~l~~L~l~~~~l~~~~p~~ 90 (179)
.....+|..||.+||..+ .++..+.. .|..........|.|.|+.|.. ....+|+.|++++|.+. .+|..
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~-~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHH-HHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhh-hhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 345567899999999987 45655666 8853222356889999999951 12356777777777776 56666
Q ss_pred CcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcC----
Q 042065 91 IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQ---- 166 (179)
Q Consensus 91 l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~---- 166 (179)
+..+++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..++.
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 666777777777777776 66666666 666777777666666 66666666666666666665555555554432
Q ss_pred -----CCCCCeEeccCC
Q 042065 167 -----LGRLKSFSVANN 178 (179)
Q Consensus 167 -----l~~L~~L~l~~N 178 (179)
+++|++|++++|
T Consensus 177 ~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp CCEEESTTCCEEEEEEE
T ss_pred hhhccCCCCCEEECcCC
Confidence 455555555444
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.5e-18 Score=125.22 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=109.5
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCc-cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPR-GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG 124 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~-~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~ 124 (179)
..+.|.|..+.|.... ..++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..+.. +++|++
T Consensus 4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~ 82 (192)
T 1w8a_A 4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQE 82 (192)
T ss_dssp TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCE
T ss_pred CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCE
Confidence 3577899999987421 24789999999999865554 4889999999999999999777888888 999999
Q ss_pred EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|+|++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9999999997777779999999999999999998889999999999999999984
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=3.5e-18 Score=127.66 Aligned_cols=123 Identities=23% Similarity=0.287 Sum_probs=99.1
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHH-HhcccCccE
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTG 124 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~-~~~l~~L~~ 124 (179)
+.+.|.|.++.|.... ..+++.|++++|.+.+..|..|..+++|++|++++|.+. .+|... .. +++|+.
T Consensus 15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~-l~~L~~ 92 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDS-LTQLTV 92 (229)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCE
T ss_pred CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhccc-CCCcCE
Confidence 4578999999997522 356889999999999877888888999999999999987 666554 45 888999
Q ss_pred EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|+|++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 999999888554555678888888888888888 778888888888888888774
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.8e-17 Score=123.20 Aligned_cols=123 Identities=21% Similarity=0.295 Sum_probs=69.0
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEE
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL 125 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L 125 (179)
..+.|.|..+.|.... ..+++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|++|
T Consensus 7 ~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L 85 (220)
T 2v9t_B 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSL 85 (220)
T ss_dssp TTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEE
T ss_pred CCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEE
Confidence 3456677777775311 134666666666666554545666666666666666665444555555 5566666
Q ss_pred EcccCcCCcccch-hccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 126 DLSSNNFSGSIPT-NLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 126 ~L~~n~l~g~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+|++|.++ .+|. .+..+++|+.|++++|++++..|..+..+++|++|++++|
T Consensus 86 ~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 86 VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 66666665 3333 3455555555555555555444455555555555555555
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.2e-17 Score=118.43 Aligned_cols=124 Identities=23% Similarity=0.257 Sum_probs=102.8
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccE
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTG 124 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~ 124 (179)
..+.|.|.++.|.... ..++++|++++|.+.+..+..+..+++|++|++++|.++ .+|.. +.. +++|++
T Consensus 3 ~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~ 80 (177)
T 2o6r_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDK-LTKLTI 80 (177)
T ss_dssp TTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTT-CTTCCE
T ss_pred CCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccC-CCccCE
Confidence 3467899999997422 357899999999999766667889999999999999998 55554 456 899999
Q ss_pred EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 9999999996655667899999999999999994434446789999999999984
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=2.9e-17 Score=120.63 Aligned_cols=123 Identities=28% Similarity=0.326 Sum_probs=87.5
Q ss_pred CCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEE
Q 042065 55 GFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGL 125 (179)
Q Consensus 55 ~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L 125 (179)
.+.|.|.++.|.... ..++++|++++|.+.+..+..|..+++|++|++++|.++ .+|.. +.. +++|++|
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~L 81 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNK-LTSLTYL 81 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTT-CTTCCEE
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCC-CCCcCEE
Confidence 467899999997421 246888899888888655556778888888888888887 45444 344 7778888
Q ss_pred EcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 126 ~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 888888774444446777777777777777774444446677777777777663
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=118.52 Aligned_cols=124 Identities=23% Similarity=0.255 Sum_probs=104.9
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEE
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL 125 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L 125 (179)
..+.|.+..+.|.... ..++++|++++|.+. .+|..|..+++|+.|++++|.+++..+..+.. +++|++|
T Consensus 6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~-l~~L~~L 83 (193)
T 2wfh_A 6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTL 83 (193)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEE
T ss_pred CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC-CCCCCEE
Confidence 3466788888886421 357899999999998 78889999999999999999999555566777 9999999
Q ss_pred EcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 126 ~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|++|.+++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 999999997777789999999999999999994434468899999999999984
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=8e-17 Score=119.64 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=77.5
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..+..+++|+.|+
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 45666777777766655556777777777777777777444444555 77777777777777766667777777888888
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..|..+..+++|+.|++++|.
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 88888876667777777788888887773
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=2.1e-16 Score=132.34 Aligned_cols=108 Identities=21% Similarity=0.166 Sum_probs=88.4
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..+++|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.. +++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~-L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC-CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 46899999999999777778999999999999999998433445666 89999999999999854445688899999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..+..|+.+++|++|++++|+
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCc
Confidence 99999885444568888888888888874
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.66 E-value=7.9e-17 Score=125.54 Aligned_cols=108 Identities=27% Similarity=0.462 Sum_probs=96.8
Q ss_pred CcEEEEEecC-CCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTD-MGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.++++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 5688999995 8888889999999999999999999998888988888 8999999999999998899999999999999
Q ss_pred ecccccCcccCchhhcCCC-CCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLG-RLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~-~L~~L~l~~N~ 179 (179)
++++|++++.+|..++.++ +|++|++++|+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 9999999988999998887 89999998873
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=5e-16 Score=115.30 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=98.0
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..+++.|++++|.+.+..|..|.++++|++|+|++|.++ .+|..++..+++|+.|+|++|.+++..|..+..+++|+.|
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 367999999999999888999999999999999999999 7776654448999999999999998778899999999999
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|++++..+..+..+++|+.|++++|.
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999999996656678899999999999984
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=4.5e-16 Score=118.67 Aligned_cols=107 Identities=23% Similarity=0.260 Sum_probs=70.3
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..+++|++++|.+.+..+..|..+++|++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 35778888888877555556777788888888888776 55554432267777777777777744334456666677777
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|++++..|..+..+++|++|++++|
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 7666666444444556666666666655
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.1e-15 Score=115.36 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=69.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..+..+..+++|+.|+
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 45666666666666555555666667777777777766333333344 66777777777777744334456677777777
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..|..+..+++|++|++++|+
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 77777774334456777777777777764
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=2.7e-16 Score=135.81 Aligned_cols=98 Identities=34% Similarity=0.501 Sum_probs=59.6
Q ss_pred CCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCccc
Q 042065 80 DMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ 159 (179)
Q Consensus 80 ~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~ 159 (179)
.+.+.|.+|..+..+++|+.|++++|.++|.+|..+.. ++.|+.|+|++|.++|.+|..++.+++|+.|++++|+++|.
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhc-cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 34455555555666666666666666666666666655 56666666666666666666666666666666666666666
Q ss_pred CchhhcCCCCCCeEeccCC
Q 042065 160 IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 160 ~p~~~~~l~~L~~L~l~~N 178 (179)
+|..+..+++|++|++++|
T Consensus 696 ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 696 IPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCGGGGGCCCCSEEECCSS
T ss_pred CChHHhCCCCCCEEECcCC
Confidence 6666666666666666655
No 19
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.9e-15 Score=119.92 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=68.3
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG 124 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~ 124 (179)
..+.|.+..+.|.... ...++.|+|++|.+++..+..+. .+++|+.|+|++|.+++..|..+.. +++|++
T Consensus 14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~~ 92 (361)
T 2xot_A 14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-VPNLRY 92 (361)
T ss_dssp TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-CTTCCE
T ss_pred CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-CCCCCE
Confidence 3455666666665311 23355666666666655555454 5666666666666665333333444 556666
Q ss_pred EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
|+|++|++++..+..+..+++|+.|++++|++++..|..|..+++|+.|++++|
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 666666665333334555556666666666555444455555555555555554
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=9.7e-16 Score=127.03 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=82.5
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 46888888888888777777888888888888888887555566666 78888888888888866556678888888888
Q ss_pred cccccCcc-cCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSG-QIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|++++ ..|..++.+++|++|++++|
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCcccccchhhhhhccCCccEEECCCC
Confidence 88888874 34666777778888877766
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=1.1e-15 Score=119.86 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=62.3
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
+++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+.+.+|..++.+++|+.|++
T Consensus 184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-CCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 3445555555554 45555555666666666666665 45555555 566666666666666666666666666666666
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++|++.+.+|..+..+++|++|++++|
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 666666666666666666666666665
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=8.7e-16 Score=106.97 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=89.6
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcc-cchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS-IPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~-~p~~~~~l~~L~~ 148 (179)
..+++.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+++. .|..+..+++|++
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 46799999999999865 67889999999999999999768888877 89999999999999952 3478899999999
Q ss_pred eecccccCcccCc---hhhcCCCCCCeEeccC
Q 042065 149 LKLDHNRFSGQIP---PQLGQLGRLKSFSVAN 177 (179)
Q Consensus 149 L~l~~n~l~g~~p---~~~~~l~~L~~L~l~~ 177 (179)
|++++|++++..+ ..+..+++|+.|++++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999995433 3688899999999864
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=4.3e-15 Score=112.06 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=84.7
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
..++++|++++|.+.+..+..|..+++|++|++++|.++ .+|.. +.. +++|+.|++++|.+++..+..+..+++|++
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDR-LTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhcc-CCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 357888888888888666667788888888888888888 45544 455 788888888888888554556888888888
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|++++..|..+..+++|+.|++++|.
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 8888888885555577888888888888874
No 24
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=110.82 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=107.4
Q ss_pred CCCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCC-ccCcCCCCCcEEEcccCCCCCCChhHHHhcccCcc
Q 042065 53 TEGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFP-RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLT 123 (179)
Q Consensus 53 ~~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p-~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~ 123 (179)
...+.|.|..+.|.... ...++.|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+.. +++|+
T Consensus 6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~ 84 (220)
T 2v70_A 6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVN 84 (220)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTTCC
T ss_pred CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCCCC
Confidence 34577889999987422 2357899999999997755 45789999999999999999555556777 99999
Q ss_pred EEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 124 GLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 124 ~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|+|++|.+++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 99999999997777779999999999999999997778899999999999999985
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=5.2e-15 Score=110.38 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=93.3
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
..+++.|++++|.+....+..|..+++|++|+|++|.++ .+|.. +.. +++|++|++++|.++ .+|..+..+++|++
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDR-LVHLKELFMCCNKLT-ELPRGIERLTHLTH 139 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCc-chhhCeEeccCCccc-ccCcccccCCCCCE
Confidence 467999999999997555566789999999999999999 55554 455 899999999999999 89999999999999
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|++++..+..+..+++|+.|++++|.
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999995445668899999999999984
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.6e-15 Score=107.62 Aligned_cols=105 Identities=24% Similarity=0.283 Sum_probs=92.1
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc--hhccCCccCC
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSYLN 147 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~ 147 (179)
..+++.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++ +| ..+..+++|+
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTHLNLSGNKLKD-ISTLEPLKKLECLK 123 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCEEECBSSSCCS-SGGGGGGSSCSCCC
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCEEeccCCccCc-chhHHHHhcCCCCC
Confidence 35799999999999865 77889999999999999999768888777 8999999999999994 44 7889999999
Q ss_pred EeecccccCcccCch----hhcCCCCCCeEeccCCC
Q 042065 148 SLKLDHNRFSGQIPP----QLGQLGRLKSFSVANNL 179 (179)
Q Consensus 148 ~L~l~~n~l~g~~p~----~~~~l~~L~~L~l~~N~ 179 (179)
+|++++|+++ .+|. .+..+++|++|++++|.
T Consensus 124 ~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 124 SLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCC
Confidence 9999999999 4554 78899999999998874
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=2.8e-15 Score=121.61 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=78.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChh-HHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPD-DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.++++|++++|.+.+..|..|..+++|++|++++|.+.+.++. .+.. +++|++|++++|.+++..|..++.+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-LSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT-CTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc-cccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 5688888888888877777788888888888888877656643 3444 7777888887777776667777777777777
Q ss_pred ecccccCcccCchh--hcCCCCCCeEeccCC
Q 042065 150 KLDHNRFSGQIPPQ--LGQLGRLKSFSVANN 178 (179)
Q Consensus 150 ~l~~n~l~g~~p~~--~~~l~~L~~L~l~~N 178 (179)
++++|++++.+|.. +..+++|++|++++|
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCC
Confidence 77777776545444 666677777777665
No 28
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=6.8e-15 Score=105.03 Aligned_cols=99 Identities=22% Similarity=0.265 Sum_probs=49.4
Q ss_pred EEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccccc
Q 042065 76 LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNR 155 (179)
Q Consensus 76 L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~ 155 (179)
++++++.++ .+|..+ .+.|++|++++|.+++..|..+.. +++|++|+|++|++++..|..+..+++|++|++++|+
T Consensus 14 l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 14 VDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDR-LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcC-cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 334444444 244333 245555555555555333444444 5555555555555553333334555555555555555
Q ss_pred CcccCchhhcCCCCCCeEeccCC
Q 042065 156 FSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 156 l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++..|..+..+++|++|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhcCCCCCCEEEeCCC
Confidence 55322233555555555555555
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=116.84 Aligned_cols=121 Identities=25% Similarity=0.332 Sum_probs=91.3
Q ss_pred CCCcccceeeecCCC----------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065 55 GFICKFTGVECWHPD----------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG 124 (179)
Q Consensus 55 ~~~c~w~gv~c~~~~----------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~ 124 (179)
...|.|.++ |+... ..++++|++++|.+++..+..+.++++|++|++++|.+++..|..+.. +++|++
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~ 104 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEH 104 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCE
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCE
Confidence 467888776 54211 246888999999888666667888888888888888888555666766 788888
Q ss_pred EEcccCcCCcccchhccCCccCCEeecccccCcccCch--hhcCCCCCCeEeccCC
Q 042065 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANN 178 (179)
Q Consensus 125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~l~~N 178 (179)
|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCC
Confidence 888888888433334788888888888888888 5665 6777888888888776
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=5.2e-15 Score=114.41 Aligned_cols=123 Identities=21% Similarity=0.226 Sum_probs=90.8
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC--CCChhHHHhcccCcc
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY--GSLPDDISKLVGFLT 123 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~--g~~p~~~~~~l~~L~ 123 (179)
..+.|.|.++.|.... ..++++|++++|.+....+..|..+++|++|++++|.++ +..|..+.. +++|+
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~ 81 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLK 81 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCC
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccC
Confidence 3467999999997522 257999999999998443445789999999999999987 223667766 78888
Q ss_pred EEEcccCcCCcccchhccCCccCCEeecccccCcccCc-hhhcCCCCCCeEeccCC
Q 042065 124 GLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANN 178 (179)
Q Consensus 124 ~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N 178 (179)
+|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 82 ~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 82 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp EEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 8888888877 567667777777777777777763322 35666666777776665
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.58 E-value=8.2e-15 Score=122.87 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=55.1
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
++++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..++.+++|++|++
T Consensus 57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 3444444444444444444445555555555555554333444444 455555555555554333344555555555555
Q ss_pred ccccCcc-cCchhhcCCCCCCeEeccCC
Q 042065 152 DHNRFSG-QIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 152 ~~n~l~g-~~p~~~~~l~~L~~L~l~~N 178 (179)
++|.+++ .+|..++.+++|++|++++|
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCCcccceechHhHhhcCCCCEEEccCC
Confidence 5555553 35666666666666666665
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1.2e-14 Score=103.04 Aligned_cols=106 Identities=24% Similarity=0.264 Sum_probs=94.3
Q ss_pred CCcEEEEEecCCCce-eeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLK-GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~-~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
..+++.|++++|.+. +.+|..+..+++|++|++++|.+++ + ..+.. +++|++|++++|.+++.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 367999999999998 7888888999999999999999984 4 56666 899999999999999778888888999999
Q ss_pred eecccccCcccCc--hhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIP--PQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p--~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|+++ .+| ..+..+++|++|++++|+
T Consensus 100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSG
T ss_pred EeccCCccC-cchhHHHHhcCCCCCEEEeeCCc
Confidence 999999999 454 788999999999999984
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.1e-14 Score=106.77 Aligned_cols=108 Identities=23% Similarity=0.253 Sum_probs=91.8
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
..++++|++++|.+.+..+..|..+++|++|++++|.++ .+|.. +.. +++|++|++++|.+++..+..+..+++|++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDK-LTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcC-ccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 467999999999999665666789999999999999998 55544 456 899999999999999655556889999999
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|++++..+..+..+++|++|++++|.
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 9999999995545558899999999999984
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=1.4e-14 Score=110.96 Aligned_cols=108 Identities=21% Similarity=0.193 Sum_probs=70.4
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCC-CCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK-LYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.++++|++++|.+.+..|..|..+++|++|++++|. +....|..+.. +++|++|++++|.+++..|..+..+++|++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC-CcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 456666666666665556666667777777777775 55333445555 6677777777777775556666677777777
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|++++..+..+..+++|++|++++|+
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 777777774434446677777777777663
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=119.02 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=58.6
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
+++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+.. +++|++|+|++|.++...+..+..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4556666666666555555666666666666666665444555555 555666666666555322223455555555555
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++|++++..|..+..+++|++|++++|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CCCccccCChhHccccccCCEEECCCC
Confidence 555555444445555555555555544
No 36
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.1e-14 Score=106.09 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=87.7
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCc-CCcccchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN-FSGSIPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~ 148 (179)
..++++|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|++++|. ++ .+| .+..+++|+.
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence 357888999999888777888888999999999999998777888887 8899999999998 55 666 6888899999
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|+++ .++ .+..+++|++|++++|+
T Consensus 164 L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 164 LNIQFDGVH-DYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECTTBCCC-CCT-TGGGCSSCCEEEECBC-
T ss_pred EECCCCCCc-ChH-HhccCCCCCEEEeeCcc
Confidence 999999988 455 77888999999998884
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=1.4e-14 Score=110.57 Aligned_cols=106 Identities=22% Similarity=0.212 Sum_probs=48.4
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +++|+.|++++|.+++..+..+..+++|++|++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-CccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 3444444444444333333444444444444444444222222233 444555555555555333333444555555555
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++|++++..|..+..+++|+.|++++|
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 555555433333455555555555554
No 38
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=1.9e-14 Score=103.14 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=72.8
Q ss_pred EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccc
Q 042065 74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDH 153 (179)
Q Consensus 74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~ 153 (179)
+.++++++.+. .+|..+. +.|++|++++|.+++..|..+.. +++|+.|+|++|++++..+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDH-LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcC-CcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45677777775 5666553 77888888888887555666666 77888888888888843333457788888888888
Q ss_pred ccCcccCch-hhcCCCCCCeEeccCCC
Q 042065 154 NRFSGQIPP-QLGQLGRLKSFSVANNL 179 (179)
Q Consensus 154 n~l~g~~p~-~~~~l~~L~~L~l~~N~ 179 (179)
|+++ .+|. .+..+++|++|++++|.
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCC
Confidence 8888 4444 47778888888888774
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=2.2e-14 Score=112.18 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=102.4
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEE
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL 125 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L 125 (179)
.++.|.|..+.|.... ..+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..+.. +++|++|
T Consensus 29 ~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L 107 (332)
T 2ft3_A 29 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKL 107 (332)
T ss_dssp SSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEE
T ss_pred CCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEE
Confidence 3456889999997422 247899999999999877888999999999999999999666888888 8999999
Q ss_pred EcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 126 ~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 99999999 7787665 789999999999985444568889999999998874
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=1.5e-14 Score=110.32 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=94.6
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..+..+++|+.|
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 467999999999999777777899999999999999999554555666 8999999999999996666667899999999
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|++++..|..+..+++|++|++++|+
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 999999996656667899999999999985
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.6e-14 Score=100.51 Aligned_cols=106 Identities=24% Similarity=0.294 Sum_probs=94.6
Q ss_pred CcEEEEEecCCCce-eeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLK-GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~-~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.+++.|++++|.+. +.+|..+..+++|++|++++|.+++ + ..+.. +++|+.|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPK-LNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCC-CTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhc-CCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 57899999999998 7889888999999999999999984 4 56666 8999999999999997788888889999999
Q ss_pred ecccccCccc-CchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQ-IPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~-~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|++++. .|..+..+++|++|++++|+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9999999952 34889999999999999984
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=2.7e-14 Score=116.18 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=98.1
Q ss_pred CCCcc--cceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065 55 GFICK--FTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG 124 (179)
Q Consensus 55 ~~~c~--w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~ 124 (179)
.+.|. |..+.|.... ..+++.|++++|.+.+..+..|.++++|+.|++++|.+++..|..+.. +++|++
T Consensus 49 ~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~ 127 (452)
T 3zyi_A 49 VCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNT 127 (452)
T ss_dssp TSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCE
T ss_pred CCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC-cccCCE
Confidence 34454 4678886422 257899999999999888889999999999999999999666677777 899999
Q ss_pred EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
|+|++|.+++..+..+..+++|++|++++|+++...+..+..+++|+.|++++|
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence 999999999555556888999999999999998444446667777777777664
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=2.7e-14 Score=108.85 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=76.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-CccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 45677777777776555556777777777777777776444455555 67777777777777754444677778888888
Q ss_pred cccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSG-QIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++ .+|..+..+++|++|++++|+
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCC
Confidence 88888874 357788888888888888774
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.54 E-value=1.9e-14 Score=120.69 Aligned_cols=108 Identities=20% Similarity=0.078 Sum_probs=90.8
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..+++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|..++.+++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChhhhcccccccEee
Confidence 56889999999998877888999999999999999988666777777 88899999999998877788888888888888
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..|..++.+++|++|++++|+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCc
Confidence 88888885446677788888888888774
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=1.6e-14 Score=117.17 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=79.5
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..+..+++|++|+
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-LDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC-cccCCEEECCCCcccccChhhccccccccEEE
Confidence 46777777777777766777777777888888888777555666666 77788888888888766677777788888888
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..+..+..+++|++|++++|.
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCC
Confidence 88888874333445677888888887774
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=1.2e-14 Score=113.07 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=88.8
Q ss_pred CcEEEEEecCCCceeeCCccC--cCCCCCcEEEcccCCCCCCChhHHHhcc-----cCccEEEcccCcCCcccchhccCC
Q 042065 71 NKVLNLRLTDMGLKGQFPRGI--RNCSSMTGLDLSSNKLYGSLPDDISKLV-----GFLTGLDLSSNNFSGSIPTNLANC 143 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l--~~l~~L~~L~L~~n~l~g~~p~~~~~~l-----~~L~~L~L~~n~l~g~~p~~~~~l 143 (179)
.++++|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..+.. + ++|++|++++|.+++..|..++.+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 578899999999988888876 7889999999999999855 877776 5 889999999999987666888889
Q ss_pred ccCCEeecccccCccc--Cchhh--cCCCCCCeEeccCCC
Q 042065 144 SYLNSLKLDHNRFSGQ--IPPQL--GQLGRLKSFSVANNL 179 (179)
Q Consensus 144 ~~L~~L~l~~n~l~g~--~p~~~--~~l~~L~~L~l~~N~ 179 (179)
++|++|++++|++.+. +|..+ ..+++|++|++++|+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 9999999999988765 34455 778888888888874
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=3e-14 Score=109.15 Aligned_cols=105 Identities=28% Similarity=0.310 Sum_probs=40.8
Q ss_pred EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065 73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152 (179)
Q Consensus 73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~ 152 (179)
+++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 444444444444333333444444444444444443211122222 3444444444444442222223334444444444
Q ss_pred cccCcccCchhhcCCCCCCeEeccCC
Q 042065 153 HNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 153 ~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+|.+++..|..+..+++|+.|++++|
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcccccCHhHccCcccccEeeCCCC
Confidence 44444333333444444444444433
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=5.9e-14 Score=109.59 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=89.5
Q ss_pred CCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEE
Q 042065 55 GFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLD 126 (179)
Q Consensus 55 ~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~ 126 (179)
.+.|.+..+.|.... ...++.|++++|.+++..+..|.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY 106 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence 466889999987421 356889999999999776768999999999999999998666888887 88999999
Q ss_pred cccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 127 LSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 127 L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC
Confidence 9999888 6665543 56666666666666444444555666666665554
No 49
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.8e-14 Score=120.69 Aligned_cols=102 Identities=27% Similarity=0.305 Sum_probs=77.8
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
.++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.. +++|+.|+|++|.+++ +| .++.+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc-CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 36678888887774 565 777788888888888887 77777777 7788888888888874 66 6777888888888
Q ss_pred ccccCcccC-chhhcCCCCCCeEeccCCC
Q 042065 152 DHNRFSGQI-PPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 152 ~~n~l~g~~-p~~~~~l~~L~~L~l~~N~ 179 (179)
++|++++.. |..++.+++|+.|++++|+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 888887554 7777788888888887773
No 50
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=1.1e-14 Score=125.12 Aligned_cols=104 Identities=28% Similarity=0.402 Sum_probs=96.2
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
..++.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|.++ .+|..++.+++|++|+
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 56888999999988 78888889999999999999998 99998988 999999999999999 8899999999999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++|.++ .+|..|+.+++|++|+|++|+
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 9999998 899999999999999999985
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=7.3e-15 Score=124.51 Aligned_cols=108 Identities=12% Similarity=0.216 Sum_probs=88.8
Q ss_pred CCcEEEEEecCCCceee-----------------CCccCc--CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC
Q 042065 70 ENKVLNLRLTDMGLKGQ-----------------FPRGIR--NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n 130 (179)
..++++|++++|.+.+. +|..+. ++++|++|++++|.+.|.+|..+.+ +++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCC
Confidence 45788888888888875 888888 8888888888888888888888887 888888888888
Q ss_pred c-CCc-ccchhccCC------ccCCEeecccccCcccCch--hhcCCCCCCeEeccCCC
Q 042065 131 N-FSG-SIPTNLANC------SYLNSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANNL 179 (179)
Q Consensus 131 ~-l~g-~~p~~~~~l------~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~l~~N~ 179 (179)
+ ++| .+|..++.+ ++|++|++++|+++ .+|. .++.+++|++|++++|+
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence 7 887 788877765 78888888888888 7887 78888888888888774
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=3.1e-14 Score=119.33 Aligned_cols=108 Identities=23% Similarity=0.211 Sum_probs=95.4
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 57899999999999887878999999999999999998656777777 89999999999999977788999999999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..|..++.+++|++|++++|+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCc
Confidence 99999986555789999999999999884
No 53
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=2.8e-14 Score=113.09 Aligned_cols=108 Identities=23% Similarity=0.186 Sum_probs=92.2
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..+++.|++++|.+.+..+..|..+++|++|+|++|.+++..+..+.. +++|+.|+|++|.+++..|..+..+++|+.|
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC-CcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 467999999999999877788999999999999999998444445556 8999999999999997778889999999999
Q ss_pred ecccccCcccCchhh----cCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQL----GQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~----~~l~~L~~L~l~~N~ 179 (179)
++++|+++ .+|..+ ..+++|+.|++++|+
T Consensus 142 ~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp ECCSSCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred ECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence 99999999 577664 568999999999985
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=3.6e-14 Score=108.21 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=51.2
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCc-ccchhccCCccCCEee
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNSLK 150 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~ 150 (179)
++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.. +++|++|++++|.+++ .+|..+..+++|++|+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc-CCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 4555555555555444444555555555555555554222223333 4555555555555543 2345555555555555
Q ss_pred cccccCcccCchhhcCCCCCC----eEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLK----SFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~----~L~l~~N 178 (179)
+++|++++..+..+..+++|+ .|++++|
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 555555533333343333333 4455444
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=5.2e-14 Score=119.53 Aligned_cols=106 Identities=23% Similarity=0.289 Sum_probs=73.6
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch-hccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L 149 (179)
.++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|. .++.+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 46777788877777655556777777777777777777666666666 777777777777777 3443 46777777777
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++++|++++..|..++.+++|++|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred ECCCCccCccChhHccccCCCCEEECCCC
Confidence 77777776444456666677777777665
No 56
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=5.3e-14 Score=102.19 Aligned_cols=102 Identities=26% Similarity=0.363 Sum_probs=89.0
Q ss_pred EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065 74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152 (179)
Q Consensus 74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~ 152 (179)
+.+++++++++ .+|..+. ..+++|++++|.+++..+.. +.. +++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67899999996 6787654 38999999999998444433 666 9999999999999998888999999999999999
Q ss_pred cccCcccCchhhcCCCCCCeEeccCCC
Q 042065 153 HNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|++++..|..+..+++|++|++++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 999997777779999999999999985
No 57
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=4.6e-14 Score=102.72 Aligned_cols=101 Identities=31% Similarity=0.400 Sum_probs=89.9
Q ss_pred EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccc
Q 042065 74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDH 153 (179)
Q Consensus 74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~ 153 (179)
+.+++++++++ .+|..+ .+.|+.|++++|.++ .+|..+.. +++|+.|++++|.+++..+..|..+++|+.|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46899999988 677655 368999999999998 89988888 99999999999999976667899999999999999
Q ss_pred ccCcccCchhhcCCCCCCeEeccCCC
Q 042065 154 NRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 154 n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++..|..|..+++|++|++++|+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC
Confidence 99997667789999999999999985
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=9.5e-14 Score=112.61 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=96.0
Q ss_pred CCCcc--cceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065 55 GFICK--FTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG 124 (179)
Q Consensus 55 ~~~c~--w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~ 124 (179)
.+.|. +..+.|.... ...++.|++++|.+.+..+..|.++++|++|+|++|.+++..+..+.. +++|++
T Consensus 38 ~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~ 116 (440)
T 3zyj_A 38 VCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNT 116 (440)
T ss_dssp SSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT-CSSCCE
T ss_pred CCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC-CccCCE
Confidence 34454 5678886422 256889999999999888888999999999999999998555566666 899999
Q ss_pred EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
|+|++|+++...+..+..+++|+.|++++|+++...+..+..+++|++|++++|
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence 999999999544456888999999999999988544456777777777777664
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=124.55 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=59.3
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCC-hhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSL-PDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~-p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.+++.|++++|.+.+..|..|.++++|++|++++|.+.+.+ |..+.. +++|+.|+|++|.+.+..|..+..+++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-CTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-CCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 55666777766666555555666666666666665444444 333444 5555555555555554445555555555555
Q ss_pred ecccccCcccCchh--hcCCCCCCeEeccCC
Q 042065 150 KLDHNRFSGQIPPQ--LGQLGRLKSFSVANN 178 (179)
Q Consensus 150 ~l~~n~l~g~~p~~--~~~l~~L~~L~l~~N 178 (179)
++++|.+++.+|.. +..+++|++|++++|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 55555555444433 445555555555544
No 60
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=5.2e-14 Score=100.41 Aligned_cols=104 Identities=25% Similarity=0.286 Sum_probs=87.2
Q ss_pred CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHH-HhcccCccE
Q 042065 54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTG 124 (179)
Q Consensus 54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~-~~~l~~L~~ 124 (179)
..+.|.|..+.|.... ..+++.|++++|.+++..|..|..+++|++|++++|.++ .+|... .. +++|++
T Consensus 5 ~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~-l~~L~~ 82 (170)
T 3g39_A 5 SQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDK-LTQLTQ 82 (170)
T ss_dssp -CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTT-CTTCCE
T ss_pred CcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccC-CCCCCE
Confidence 3467888888886421 357899999999999887888999999999999999999 566554 55 899999
Q ss_pred EEcccCcCCcccchhccCCccCCEeecccccCccc
Q 042065 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ 159 (179)
Q Consensus 125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~ 159 (179)
|+|++|++++..+..+..+++|++|++++|+++..
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999999965555689999999999999999744
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=5e-14 Score=117.95 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=94.8
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
..++++|+|++|.+++..+..|.++++|++|+|++|.++ .+|.. +.. +++|++|++++|++++..+..++++++|++
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~-L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcC-CCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 367999999999999777778999999999999999998 56654 555 999999999999999655557999999999
Q ss_pred eecccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSG-QIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|++++ .+|..++.+++|++|++++|+
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred eccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9999999974 468889999999999999984
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=4.2e-14 Score=109.25 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=77.7
Q ss_pred CcEEEEEecCCCcee-eCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKG-QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~-~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.++++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+.. +++|+.|++++|.+++..+..+..+++|+.|
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC-CCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 457777777777665 45666777777777777777777555666666 7777888888777775545567777788888
Q ss_pred ecccccCcccCchhhcCCC-CCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLG-RLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~-~L~~L~l~~N~ 179 (179)
++++|++++..|..+..++ +|++|++++|.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 8888888777777777774 78888887774
No 63
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.5e-14 Score=101.03 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=90.6
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHH-HhcccCccEEEcccCcCCcccch--hccCCccCC
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTGLDLSSNNFSGSIPT--NLANCSYLN 147 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~-~~~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L~ 147 (179)
.+++.|++++|.+.+. +.+..+++|++|++++|.++ .+|..+ .. +++|+.|++++|.++ .+|. .+..+++|+
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~-l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQA-LPDLTELILTNNSLV-ELGDLDPLASLKSLT 116 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHH-CTTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhc-CCCCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence 3799999999999865 67889999999999999998 566555 66 999999999999997 7776 788999999
Q ss_pred EeecccccCcccCchh----hcCCCCCCeEeccCCC
Q 042065 148 SLKLDHNRFSGQIPPQ----LGQLGRLKSFSVANNL 179 (179)
Q Consensus 148 ~L~l~~n~l~g~~p~~----~~~l~~L~~L~l~~N~ 179 (179)
.|++++|+++ .+|.. +..+++|+.||+++|.
T Consensus 117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999998 67775 8899999999998874
No 64
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=6e-14 Score=102.14 Aligned_cols=104 Identities=22% Similarity=0.261 Sum_probs=77.8
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+. .++.+..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..+..+++|++|+
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-CCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 46778888877554 3346777888888888888887656666666 77888888888888876777778888888888
Q ss_pred ccccc-CcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNR-FSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~-l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|. ++ .+| .+..+++|++|++++|+
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBC
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCC
Confidence 88887 44 565 57778888888887764
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=8.8e-14 Score=105.90 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=24.5
Q ss_pred ccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 119 VGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 119 l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 344444444444444222223344444444444444444222222344444444444444
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=8e-14 Score=107.52 Aligned_cols=102 Identities=24% Similarity=0.264 Sum_probs=43.6
Q ss_pred EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccch-hccCCccCCEee
Q 042065 73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSLK 150 (179)
Q Consensus 73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~ 150 (179)
+++|++++|.+++..+..|..+++|++|++++|.++ .+|.. +.. +++|+.|++++|+++ .+|. .+..+++|+.|+
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP-TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTT-CTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhccc-ccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEE
Confidence 444444444444333333444444444444444444 22222 222 444444444444444 2222 233444444444
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|+++ .+|..+..+.+|+.+++++|
T Consensus 179 L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 4444444 44444444444455554444
No 67
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=7.7e-14 Score=109.66 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=79.4
Q ss_pred CcccceeeecCCCCCcEEEEEecCC-CceeeCCccCcCCCCCcEEEccc-CCCCCCChhHHHhcccCccEEEcccCcCCc
Q 042065 57 ICKFTGVECWHPDENKVLNLRLTDM-GLKGQFPRGIRNCSSMTGLDLSS-NKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134 (179)
Q Consensus 57 ~c~w~gv~c~~~~~~~l~~L~l~~~-~l~~~~p~~l~~l~~L~~L~L~~-n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g 134 (179)
.|.|..+.|. ++ +++ .+|. +..+++|+.|+|++ |.+++..|..+.. +++|+.|+|++|++++
T Consensus 7 ~C~~~~v~~~-------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 7 PHGSSGLRCT-------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRF 70 (347)
T ss_dssp CSSSSCEECC-------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS-CCCCSEEECCSSCCCE
T ss_pred cccCCEEEcC-------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc-ccCCCEEECCCCccce
Confidence 5777766664 33 555 4777 88888899999986 8888444456666 8889999999999887
Q ss_pred ccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 135 ~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
..|..|..+++|+.|+|++|+|+ .+|..+.....|+.|++.+|.
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSC
T ss_pred eCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCCceEEEeeCCC
Confidence 77778888899999999999988 455544333338888888874
No 68
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=1.2e-14 Score=125.10 Aligned_cols=150 Identities=23% Similarity=0.264 Sum_probs=91.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcccceeeecCCCCCcEEE------------------EEecCC
Q 042065 20 YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLN------------------LRLTDM 81 (179)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~~~~l~~------------------L~l~~~ 81 (179)
.....+..++.+++..+..+.+.....|... ....+.|.+..+.. ++++. ++|+.+
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~---~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGD---STPSGTATNSAVST---PLTPKIELFANGKDEANQALLQHKKLSQY 201 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCC---CCccccCCCceecC---CccceEEeeCCCCCcchhhHhhcCccCcc
Confidence 3445667888888877643322222245322 12345565555443 22333 333443
Q ss_pred Ccee---------eCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065 82 GLKG---------QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152 (179)
Q Consensus 82 ~l~~---------~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~ 152 (179)
.+.+ ..+..+..++.|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..++.+++|++|+|+
T Consensus 202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 3332 23566888999999999999998 89999998 999999999999999 899999999999999999
Q ss_pred cccCcccCchhhcCCCCCCeEeccCCC
Q 042065 153 HNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|.|+ .+|..++.+++|++|+|++|+
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSC
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCC
Confidence 99999 899999999999999999984
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=1.2e-13 Score=106.43 Aligned_cols=107 Identities=24% Similarity=0.280 Sum_probs=92.7
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..++++|++++|.+. .+|..+..+++|++|++++|.+++..|..+.. +++|+.|++++|++++..+..+..+++|+.|
T Consensus 76 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 467999999999998 78888999999999999999999444456666 8999999999999996555567899999999
Q ss_pred ecccccCcccCch-hhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPP-QLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~-~~~~l~~L~~L~l~~N~ 179 (179)
++++|+++ .+|. .+..+++|++|++++|+
T Consensus 154 ~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp ECTTSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccCHHHhcCcCCCCEEECCCCc
Confidence 99999999 5655 46789999999999985
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=118.27 Aligned_cols=105 Identities=22% Similarity=0.217 Sum_probs=74.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.. +++|++|++++|+++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 46777777777777655566777777777777777777555666666 777777777777777 56665 677777777
Q ss_pred cccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSG-QIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++ .+|..++.+++|++|++++|+
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcc
Confidence 77777775 456777777777777777663
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=2.5e-14 Score=124.92 Aligned_cols=108 Identities=15% Similarity=0.222 Sum_probs=90.9
Q ss_pred CCcEEEEEecCCCcee-----------------eCCccCc--CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC
Q 042065 70 ENKVLNLRLTDMGLKG-----------------QFPRGIR--NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~-----------------~~p~~l~--~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n 130 (179)
..+++.|+|++|.+.+ .+|..+. ++++|++|+|++|.+.+.+|..+.+ +++|+.|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCC
Confidence 4678899999999887 3888877 8899999999999888888988888 888999999998
Q ss_pred c-CCc-ccchhccCCc-------cCCEeecccccCcccCch--hhcCCCCCCeEeccCCC
Q 042065 131 N-FSG-SIPTNLANCS-------YLNSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANNL 179 (179)
Q Consensus 131 ~-l~g-~~p~~~~~l~-------~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~l~~N~ 179 (179)
+ ++| .+|..++.++ +|+.|++++|+++ .+|. .++.+++|+.|++++|+
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence 7 887 7887766655 8888888888888 8888 88888888888888874
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=1.3e-13 Score=115.90 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=87.8
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch-hccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L 149 (179)
.+++.|++++|.+.+..|..|..+++|+.|+|++|.+++..|..+.. +++|++|+|++|.++ .+|. .+..+++|++|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC-CCCCCEEEeeCCCCC-CCCHHHhccCCCCCEE
Confidence 45778888888888777778888999999999999988655555666 888999999999988 4554 46888999999
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|.+++..|..++.+++|++|++++|+
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 999999987777788888999999998874
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.47 E-value=7.4e-14 Score=116.44 Aligned_cols=105 Identities=21% Similarity=0.178 Sum_probs=89.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 57899999999998766778999999999999999998666777777 889999999999998 78876 789999999
Q ss_pred cccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSG-QIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++ .+|..++.+++|++|++++|+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCc
Confidence 99999985 356789999999999998874
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=1.9e-13 Score=109.04 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=80.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchh-ccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~L 149 (179)
.++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|.. +..+++|++|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 45677777777777666667788888888888888887555555666 788888888888888 55554 5778888888
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|++++..|..+..+++|++|++++|+
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 888888886556667788888888888774
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=1.5e-13 Score=102.76 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=72.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCC-CCCCChh-HHHhcccCccEEEccc-CcCCcccchhccCCccCC
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK-LYGSLPD-DISKLVGFLTGLDLSS-NNFSGSIPTNLANCSYLN 147 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~g~~p~-~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~ 147 (179)
.++++|++++|.+++..+..|..+++|++|++++|. ++ .+|. .+.. +++|++|++++ |.+++..+..+..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~-l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEES-CTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCC-CcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 367888888888876666677778888888888886 66 4554 4444 77788888887 777744445677777788
Q ss_pred EeecccccCcccCchhhcCCCCCC---eEeccCC
Q 042065 148 SLKLDHNRFSGQIPPQLGQLGRLK---SFSVANN 178 (179)
Q Consensus 148 ~L~l~~n~l~g~~p~~~~~l~~L~---~L~l~~N 178 (179)
+|++++|++++ +|. +..+++|+ +|++++|
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence 88877777773 665 55666665 6666665
No 76
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=111.82 Aligned_cols=108 Identities=20% Similarity=0.209 Sum_probs=83.5
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 148 (179)
..++++|++++|.+.+..|..|.++++|++|++++|.++ .+|.. +.. +++|++|++++|.+.+..|..+..+++|+.
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccC-CCCCCEEECCCCccccCChhHccccccCCE
Confidence 357888888888888777888888888888888888887 55544 445 788888888888888666777777888888
Q ss_pred eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|++++..|..+..+++|+.|++++|+
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 8888888776666677777777777777663
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=9.7e-14 Score=115.32 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=75.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC-CCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY-GSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~-g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.++++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+.. +++|+.|++++|.+++..|..+..+++|+.|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc-ccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 45666666666666666666666777777777777765 456666666 6777777777777776657777777777777
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|++++..|..+..+++|+.|++++|.
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 777777775555566777777777777763
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=1.6e-13 Score=113.04 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=63.8
Q ss_pred cccceeeecCCCCCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc
Q 042065 58 CKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP 137 (179)
Q Consensus 58 c~w~gv~c~~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p 137 (179)
|.+.++.+.. ..+++.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+...+++|+.|+|++|.+++. |
T Consensus 109 N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 109 NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp SCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred CcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 3344444432 345677777777777666666667777777777777777656665542255566666655555532 2
Q ss_pred hhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 138 TNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 138 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
. ...+++|+.|++++|.+++ +|+.+..+++|+.|++++|
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCC
Confidence 2 2234455555555555542 3333444444555544444
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.45 E-value=2e-13 Score=113.07 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=91.5
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCc-ccchhccCCccCCE
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNS 148 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~ 148 (179)
..++++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++ .+|..++.+++|++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT-CTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc-CCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 467999999999999888888999999999999999999666666777 8999999999999985 45677888999999
Q ss_pred eecccccCcccCc-hhhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIP-PQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N~ 179 (179)
|++++|++.+.+| ..+..+++|++|++++|+
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9999988555665 568888888888888764
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=112.60 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=77.8
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..+..++.+++|++|+
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC-ccccccccccccccccCCCccccccccccEEe
Confidence 45777777777777666666777777777777777777444455555 77777777777777743333577788888888
Q ss_pred cccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSG-QIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|.+++ .+|..++++++|++|++++|+
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 88888775 467888888888888887764
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=2.1e-13 Score=114.72 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=93.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.++++++.+....+..+..++.|++|++++|.+++..|..+.. +++|+.|+|++|.+++..|..++.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45788999999988655556788999999999999999666667777 99999999999999987777889999999999
Q ss_pred cccccCcccCchh-hcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~-~~~l~~L~~L~l~~N~ 179 (179)
+++|.++ .+|.. |+.+++|++|++++|+
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCc
Confidence 9999999 56655 6899999999999984
No 82
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=8.1e-13 Score=94.58 Aligned_cols=102 Identities=24% Similarity=0.275 Sum_probs=83.3
Q ss_pred CCCcccceeeecCC--------CCCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHH-HhcccCccEE
Q 042065 55 GFICKFTGVECWHP--------DENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTGL 125 (179)
Q Consensus 55 ~~~c~w~gv~c~~~--------~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~-~~~l~~L~~L 125 (179)
.+.|....+.|... -..+++.|++++|.+.+..|..|..+++|++|+|++|.++ .+|..+ .. +++|+.|
T Consensus 9 ~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~-l~~L~~L 86 (174)
T 2r9u_A 9 QCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDK-LTQLTQL 86 (174)
T ss_dssp TSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEE
T ss_pred CCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCC-cchhhEE
Confidence 34555556666531 1357899999999999888889999999999999999999 566654 55 8999999
Q ss_pred EcccCcCCcccchhccCCccCCEeecccccCcc
Q 042065 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSG 158 (179)
Q Consensus 126 ~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g 158 (179)
+|++|++++..+..+..+++|++|++++|++..
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999999995444458999999999999999983
No 83
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.1e-13 Score=97.56 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=86.3
Q ss_pred CcEEEEEecCCCceeeCCccCcCC-CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchh-ccCCccCCE
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNC-SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNS 148 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l-~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~ 148 (179)
.+++.|++++|.+. .+|. +..+ ++|++|++++|.+++ + ..+.. +++|+.|++++|.++ .+|.. +..+++|++
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~-l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPL-LRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCC-CSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-ccccc-CCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 56999999999998 4554 4444 499999999999984 4 46666 899999999999999 45644 589999999
Q ss_pred eecccccCcccCch--hhcCCCCCCeEeccCCC
Q 042065 149 LKLDHNRFSGQIPP--QLGQLGRLKSFSVANNL 179 (179)
Q Consensus 149 L~l~~n~l~g~~p~--~~~~l~~L~~L~l~~N~ 179 (179)
|++++|+++ .+|. .+..+++|+.|++++|.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSG
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCC
Confidence 999999997 7787 78899999999999984
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=5.2e-13 Score=105.22 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=85.2
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccch--hccCCccC
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPT--NLANCSYL 146 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L 146 (179)
..++++|++++|.+.+..+..|.++++|++|++++|.++ .+|.. +.. +++|++|++++|.++ .+|. .+..+++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L 151 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKP-LSSLTFLNLLGNPYK-TLGETSLFSHLTKL 151 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTT-CTTCSEEECTTCCCS-SSCSSCSCTTCTTC
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCC-CccCCEEECCCCCCc-ccCchhhhccCCCC
Confidence 467899999999999877888999999999999999998 56655 556 889999999999888 5665 67788888
Q ss_pred CEeeccccc-CcccCchhhcCCCCCCeEeccCCC
Q 042065 147 NSLKLDHNR-FSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 147 ~~L~l~~n~-l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++|++++|+ +....|..+..+++|++|++++|+
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888888884 554445667777778888777663
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=4.9e-13 Score=110.21 Aligned_cols=108 Identities=23% Similarity=0.259 Sum_probs=75.7
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCC--CChhHHHhcccCccEEEcccCcCCcccchh-ccCCccC
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYL 146 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L 146 (179)
..++++|++++|.+.+.+|..+..+++|+.|++++|.+++ .+|..+.. +++|+.|++++|.+++.+|.. +..+++|
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccchhccCccC
Confidence 4568888888888887788888888888888888888875 45566666 788888888888888656654 4555555
Q ss_pred CEeecccccCcc---------------------cCchhhcCCCCCCeEeccCC
Q 042065 147 NSLKLDHNRFSG---------------------QIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 147 ~~L~l~~n~l~g---------------------~~p~~~~~l~~L~~L~l~~N 178 (179)
+.|++++|++++ .+|..+..+++|++|++++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 555555554443 44555555566666666655
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.41 E-value=3e-13 Score=114.82 Aligned_cols=106 Identities=24% Similarity=0.222 Sum_probs=67.4
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChh-HHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPD-DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.++++|++++|.+.+..|..|.++++|++|++++|.++ .+|. .+.. +++|++|++++|.+++..|..++.+++|++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAF-CTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTT-CTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhcc-CCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 35666777776666655666666666677777666666 4444 3444 6666666666666664444556666666666
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++++|.+++..|..++.+++|++|++++|
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred ECCCCcccccCchhhcccccCCEEEccCC
Confidence 66666666555555666666666666665
No 87
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=5.2e-13 Score=111.91 Aligned_cols=108 Identities=22% Similarity=0.099 Sum_probs=79.2
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|..+..+++|++|+
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG-PKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-cccccEeeccccCcccCCcchhccCCcccEEE
Confidence 56788888888887777777888888888888888887666666666 77888888888888754466677777888888
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++.-++.+..+++|++|++++|+
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred CCCCcccccCcccccCCcccCEEEcccCc
Confidence 88877774222333447777777777763
No 88
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=1.5e-12 Score=93.06 Aligned_cols=103 Identities=29% Similarity=0.317 Sum_probs=84.4
Q ss_pred EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065 73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152 (179)
Q Consensus 73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~ 152 (179)
.+.++++++++. .+|..+ .++|+.|++++|.+++..+..+.. +++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcC-cccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 367889999987 566544 478999999999998443444556 8999999999999995555567899999999999
Q ss_pred cccCcccCchhhcCCCCCCeEeccCCC
Q 042065 153 HNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|++++..+..+..+++|++|++++|+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCc
Confidence 999996555567899999999999985
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=2.7e-13 Score=105.30 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=65.7
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCC--ChhHH--HhcccCccEEEcccCcCCc--ccc-hhccCC
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGS--LPDDI--SKLVGFLTGLDLSSNNFSG--SIP-TNLANC 143 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~--~p~~~--~~~l~~L~~L~L~~n~l~g--~~p-~~~~~l 143 (179)
.++++|++++|.+.+..|..+..+++|++|++++|.+.+. +|..+ .. +++|++|++++|.+++ .++ ..+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK-FPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc-CCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 4577777777777665556677777777777777776544 23333 33 5667777777776662 122 223455
Q ss_pred ccCCEeecccccCcccCc-hhhcCCCCCCeEeccCCC
Q 042065 144 SYLNSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 144 ~~L~~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N~ 179 (179)
++|+.|++++|++++..| ..+..+++|++|++++|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 667777777776665443 334455666666666663
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=4.6e-13 Score=116.73 Aligned_cols=109 Identities=26% Similarity=0.299 Sum_probs=79.7
Q ss_pred CCcEEEEEecCCCceeeC-CccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchh--ccCCccC
Q 042065 70 ENKVLNLRLTDMGLKGQF-PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN--LANCSYL 146 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~-p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~--~~~l~~L 146 (179)
..+++.|++++|...+.+ |..|.++++|++|+|++|.+.+..|..+.. +++|++|+|++|.+++.+|.. +..+++|
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCC
Confidence 356778888887655555 566777888888888888887656777766 777888888888877656654 7778888
Q ss_pred CEeecccccCcccCc-hhhcCCCCCCeEeccCCC
Q 042065 147 NSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 147 ~~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N~ 179 (179)
++|++++|++++..| ..++.+++|++|++++|+
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 888888888775443 467778888888877763
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=104.73 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=83.0
Q ss_pred cEEEEEecCCCceeeCCccC--cCCCCCcEEEcccCCCCCCCh----hHHHhcccCccEEEcccCcCCcccchhccCCcc
Q 042065 72 KVLNLRLTDMGLKGQFPRGI--RNCSSMTGLDLSSNKLYGSLP----DDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY 145 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l--~~l~~L~~L~L~~n~l~g~~p----~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~ 145 (179)
++++|++++|.+.+..|..+ ..+++|++|++++|.+++..| ..+.. +++|++|++++|.+.+..|..+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL-KPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB-CSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh-ccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 48899999999998888887 888999999999999886554 23344 788999999999998777778888889
Q ss_pred CCEeecccccCccc--Cchh--hcCCCCCCeEeccCCC
Q 042065 146 LNSLKLDHNRFSGQ--IPPQ--LGQLGRLKSFSVANNL 179 (179)
Q Consensus 146 L~~L~l~~n~l~g~--~p~~--~~~l~~L~~L~l~~N~ 179 (179)
|++|++++|++.+. ++.. ++.+++|++|++++|+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 99999999887642 2222 3567777777777764
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=8.6e-13 Score=102.67 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=53.3
Q ss_pred EEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 73 VLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 73 l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
++.|++++|.+.+..+..+. .+++|++|++++|.++ .+|... . +++|++|++++|.++ .+|..+..+++|+.|++
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~-~-l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-V-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCC-C-CTTCCEEECCSSCCC-EECGGGGGGTTCSEEEC
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccccc-c-cccCCEEECCCCcCC-cchhhhcccCcccEEEC
Confidence 44444444444433333221 3444444444444444 222211 1 455566666666665 34455666666666666
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++|+++ .+|..+..+++|+.|++++|.
T Consensus 222 ~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 222 RNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred cCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 666666 456666666677777776663
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=5.2e-13 Score=103.90 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=91.3
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..++++|++++|.+.+..+..+..+++|++|++++|.+++..|..+...+++|++|++++|.++ .+|.. ..+++|+.|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~-~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECC-CCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccccc-cccccCCEE
Confidence 4579999999999997777788899999999999999996666666533889999999999999 45543 458999999
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|+++ .+|..+..+++|+.|++++|+
T Consensus 197 ~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp ECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred ECCCCcCC-cchhhhcccCcccEEECcCCc
Confidence 99999999 567779999999999999985
No 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.39 E-value=9.2e-13 Score=106.80 Aligned_cols=104 Identities=20% Similarity=0.236 Sum_probs=56.0
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
++++|++++|.+. .+| .+..+++|+.|++++|.+++..|..+.. +++|+.|++++|++++..|..+..+++|+.|++
T Consensus 186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 3444444444444 223 2444555555555555555433444444 555666666666665444555556666666666
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++|++++..+..+..+++|+.|++++|
T Consensus 263 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 263 AHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCCCccChhHhccccCCCEEEcCCC
Confidence 666666333344555666666666665
No 95
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=9.8e-13 Score=106.99 Aligned_cols=104 Identities=19% Similarity=0.210 Sum_probs=61.9
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
+++.|++++|.+.+ +| .+..+++|+.|++++|.+++..|..+.. +++|+.|++++|.+++..|..+..+++|+.|++
T Consensus 197 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 197 NLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp TCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 45555555555542 22 3455566666666666666444555555 666666666666666555556666666666666
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++|++++..+..+..+++|+.|++++|
T Consensus 274 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCCcCCccChHHhccccCCCEEEccCC
Confidence 666666333344556666777776666
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.3e-13 Score=105.55 Aligned_cols=104 Identities=25% Similarity=0.331 Sum_probs=58.1
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCC---------------------------ChhH---H-Hhcc
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGS---------------------------LPDD---I-SKLV 119 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~---------------------------~p~~---~-~~~l 119 (179)
.++++|++++|.+.+..+..+..+++|++|++++|.+.+. +|.. + .. +
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-G 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-T
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-C
Confidence 4677777777777766666677777777777777765421 1211 1 22 4
Q ss_pred cCccEEEcccCcCCcccchhccCC---ccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 120 GFLTGLDLSSNNFSGSIPTNLANC---SYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 120 ~~L~~L~L~~n~l~g~~p~~~~~l---~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC
Confidence 455555555555554444444443 35555555555555 4454442 45555555555
No 97
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=1.2e-12 Score=109.73 Aligned_cols=101 Identities=22% Similarity=0.232 Sum_probs=88.8
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCccc-chhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSI-PTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L 149 (179)
.+++.|++++|.++ .+|..+..+++|+.|+|++|.++ .+| .+.. +++|+.|+|++|.+++.. |..++.+++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 57999999999999 88999999999999999999999 488 7777 999999999999999765 9999999999999
Q ss_pred ecccccCcccCch---hhcCCCCCCeEec
Q 042065 150 KLDHNRFSGQIPP---QLGQLGRLKSFSV 175 (179)
Q Consensus 150 ~l~~n~l~g~~p~---~~~~l~~L~~L~l 175 (179)
++++|++++..|. .+..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999955432 2334889999875
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.37 E-value=2.2e-12 Score=100.62 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=54.7
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.. +++|++|++++|.++ .+|..+..+++|++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence 35666666666666655666666666777777766666444445555 666666666666666 6666666666666666
Q ss_pred cccccCc
Q 042065 151 LDHNRFS 157 (179)
Q Consensus 151 l~~n~l~ 157 (179)
+++|+++
T Consensus 270 l~~N~i~ 276 (330)
T 1xku_A 270 LHNNNIS 276 (330)
T ss_dssp CCSSCCC
T ss_pred CCCCcCC
Confidence 6666666
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.36 E-value=9.2e-13 Score=98.38 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=69.9
Q ss_pred CcEEEEEecCCC-ceeeCCccCcCCCCCcEEEccc-CCCCCCChh-HHHhcccCccEEEcccCcCCcccchhccCCccCC
Q 042065 71 NKVLNLRLTDMG-LKGQFPRGIRNCSSMTGLDLSS-NKLYGSLPD-DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN 147 (179)
Q Consensus 71 ~~l~~L~l~~~~-l~~~~p~~l~~l~~L~~L~L~~-n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~ 147 (179)
.++++|++++|. ++...+..|.++++|++|++++ |.++ .+|. .+.. +++|++|++++|.+++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~-l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKE-LPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEEC-CTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCC-CCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 567778888776 6655455677777788888877 7777 4443 3444 6777777777777773 665 66666666
Q ss_pred ---Eeecccc-cCcccCchhhcCCCCCC-eEeccCCC
Q 042065 148 ---SLKLDHN-RFSGQIPPQLGQLGRLK-SFSVANNL 179 (179)
Q Consensus 148 ---~L~l~~n-~l~g~~p~~~~~l~~L~-~L~l~~N~ 179 (179)
.|++++| ++++..+..+..+++|+ .|++++|+
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 7777777 66633334466677777 77776653
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1.1e-12 Score=108.04 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=91.8
Q ss_pred CcEEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.+++.|++++|.+.+..|..+. .+++|+.|+|++|.+++ +|... . +++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~~~-~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-V-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCC-C-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccccc-c-CCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 5799999999999988888776 79999999999999984 44432 3 8899999999999995 66679999999999
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++++|.++ .+|..+..+++|+.|++++|.
T Consensus 220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred EecCCcCc-ccchhhccCCCCCEEEcCCCC
Confidence 99999999 589999999999999999984
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.35 E-value=1.5e-12 Score=108.59 Aligned_cols=108 Identities=22% Similarity=0.241 Sum_probs=71.3
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCC--CChhHHHhcccCccEEEcccCcCCcccchh-ccCCc--
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCS-- 144 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~-- 144 (179)
..++++|++++|.+.+.+|..+..+++|++|++++|.+++ .+|..+.. +++|+.|++++|.+++.+|.. +..++
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 3567788888888777677777777888888888887773 22334455 677777777777777545543 33343
Q ss_pred --------------------cCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 145 --------------------YLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 145 --------------------~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence 5555555555555 566666666777777777664
No 102
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=1.4e-12 Score=103.93 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=92.2
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|+++++.+....+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56889999999988544445788999999999999998555557777 99999999999999977777899999999999
Q ss_pred cccccCcccCchh-hcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~-~~~l~~L~~L~l~~N~ 179 (179)
+++|+++ .+|.. +..+++|++|++++|+
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCc
Confidence 9999999 67766 5889999999999984
No 103
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=5.4e-14 Score=102.44 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=87.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+.. +++|++|++++|.+++ +| .+..+++|++|+
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-CCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 578999999999886 67 7888999999999999998 88887776 7899999999999994 66 688889999999
Q ss_pred cccccCcccCc--hhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIP--PQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p--~~~~~l~~L~~L~l~~N~ 179 (179)
+++|+++ .+| ..+..+++|++|++++|.
T Consensus 122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ESEEECC-CHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCcCC-chhHHHHHhcCCCCCEEEecCCc
Confidence 9999998 444 378899999999999883
No 104
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.33 E-value=2e-12 Score=101.06 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=50.6
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l 151 (179)
++++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-CCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 4556666666665554555666666666666666666444444544 566666666666666 56666666666666666
Q ss_pred ccccCc
Q 042065 152 DHNRFS 157 (179)
Q Consensus 152 ~~n~l~ 157 (179)
++|+++
T Consensus 272 ~~N~l~ 277 (332)
T 2ft3_A 272 HTNNIT 277 (332)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 666665
No 105
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=7.2e-12 Score=97.20 Aligned_cols=100 Identities=26% Similarity=0.404 Sum_probs=56.3
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+ + +.+..+++|++|++++|.++ .+|. +.. +++|++|++++|.+++ ++. +..+++|+.|+
T Consensus 85 ~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 85 TKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP-LAG-LSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS 157 (308)
T ss_dssp CSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC-CCGG-GTT-CTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred CCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC-Cchh-hcC-CCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence 345555555555543 2 23555555666666666655 3433 444 5666666666666653 332 55666666666
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|+++ .++. +..+++|+.|++++|+
T Consensus 158 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 158 IGNAQVS-DLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CCSSCCC-CCGG-GTTCTTCCEEECCSSC
T ss_pred ccCCcCC-CChh-hcCCCCCCEEECCCCc
Confidence 6666666 3443 6666667777766653
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=8.2e-12 Score=94.91 Aligned_cols=99 Identities=20% Similarity=0.330 Sum_probs=80.1
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++++|.+.+ +++ +..+++|++|++++|.++ .+|... .++|+.|++++|.+++ ++ .+..+++|+.|+
T Consensus 63 ~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~---~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 63 TNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP---SACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC---CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred CCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc---cCcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 578899999998885 344 888899999999999987 455422 2679999999999884 44 588899999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++ +| .+..+++|+.|++++|+
T Consensus 135 Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 135 IRNNKLKS-IV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CTTSCCCB-CG-GGGGCTTCCEEECTTSC
T ss_pred CCCCcCCC-Ch-HHccCCCCCEEECCCCc
Confidence 99999984 55 68889999999999885
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.30 E-value=4e-12 Score=100.27 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=90.2
Q ss_pred CCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE-EE
Q 042065 56 FICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG-LD 126 (179)
Q Consensus 56 ~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~-L~ 126 (179)
+.|.+..|.|.... ..++++|+|++|.++...+..|.++++|++|+|++|.+.+.+|...+..++++++ +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 66889999997421 2468999999999996555679999999999999999876787655433677665 56
Q ss_pred cccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEecc
Q 042065 127 LSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVA 176 (179)
Q Consensus 127 L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~ 176 (179)
+..|+++...|..+..+++|++|++++|++....+..+....++..+++.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 67789996556788999999999999999984333333344444555543
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=6.2e-12 Score=95.59 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=75.8
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..+++.|++++|.+.+ +|. +.. ++|+.|++++|.++ .++ .+.. +++|+.|++++|++++ +| .+..+++|+.|
T Consensus 84 l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~-~~~-~l~~-l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 84 LTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELR-DTD-SLIH-LKNLEILSIRNNKLKS-IV-MLGFLSKLEVL 155 (263)
T ss_dssp CSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCS-BSG-GGTT-CTTCCEEECTTSCCCB-CG-GGGGCTTCCEE
T ss_pred CCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccC-CCh-hhcC-cccccEEECCCCcCCC-Ch-HHccCCCCCEE
Confidence 3568888888888875 443 233 78888888888887 454 4666 7888888888888884 44 57788888888
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
++++|++++. ..+..+++|+.|++++|
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 8888888854 66778888888888876
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.30 E-value=6.5e-12 Score=98.38 Aligned_cols=102 Identities=18% Similarity=0.311 Sum_probs=62.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.. + +.+..+++|++|++++|.++ .+| .+.. +++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 243 ~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 243 SQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DIS-VLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp TTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CCG-GGGG-CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CCh-hhcC-CCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 345555555555543 2 34556666666666666665 333 3444 66677777777777666666666777777777
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..| +..+++|+.|++++|.
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred ccCCccccccC--hhhhhccceeehhhhc
Confidence 77777764333 6666777777777663
No 110
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=1.1e-11 Score=96.15 Aligned_cols=100 Identities=27% Similarity=0.370 Sum_probs=66.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++++|.+.+ ++. +..+++|++|++++|.++ .++. +.. +++|+.|++++|.+++ ++. +..+++|+.|+
T Consensus 107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT-NISP-LAG-LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLK 179 (308)
T ss_dssp TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccC-cCcc-ccC-CCCccEEEccCCcCCC-Chh-hcCCCCCCEEE
Confidence 567788888887764 333 677777777777777776 4443 445 6777777777777773 443 66667777777
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|+++ .+|. +..+++|++|++++|+
T Consensus 180 l~~n~l~-~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 180 ADDNKIS-DISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCSSCCC-CCGG-GGGCTTCCEEECTTSC
T ss_pred CCCCccC-cChh-hcCCCCCCEEEccCCc
Confidence 7777766 3333 5566666666666653
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=9.6e-12 Score=95.81 Aligned_cols=100 Identities=24% Similarity=0.386 Sum_probs=58.4
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++++|.+.+ + +.+..+++|++|++++|.++ .++ .+.. +++|+.|++++|.+++ + ..+..+++|+.|+
T Consensus 90 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~-~l~~-l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITD-I-TVLSRLTKLDTLS 162 (291)
T ss_dssp TTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCC-CCh-hhcC-CCCCCEEEccCCcCCc-c-hhhccCCCCCEEE
Confidence 345555555555543 2 22555566666666666665 332 3444 5666666666666663 3 3566666777777
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++ ++. +..+++|+.|++++|+
T Consensus 163 L~~N~l~~-~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 163 LEDNQISD-IVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred ccCCcccc-chh-hcCCCccCEEECCCCc
Confidence 77777763 333 6667777777777663
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=1.6e-11 Score=94.57 Aligned_cols=99 Identities=28% Similarity=0.370 Sum_probs=52.1
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+. ++ +..+++|++|++++|.++ .+|. +.. +++|++|++++|.+++ + ..+..+++|+.|+
T Consensus 68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK-DLSS-LKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 140 (291)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CGGG-GTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC-CChh-hcc-CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence 3455555555555532 22 555555555555555555 2332 444 5555555555555552 2 2345555555555
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|++++ + ..+..+++|++|++++|
T Consensus 141 l~~n~l~~-~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 141 LGNNKITD-I-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred ccCCcCCc-c-hhhccCCCCCEEEccCC
Confidence 55555552 2 34555555555555555
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=2.6e-12 Score=107.63 Aligned_cols=101 Identities=29% Similarity=0.451 Sum_probs=66.5
Q ss_pred cccee-eecCCCCCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc
Q 042065 59 KFTGV-ECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP 137 (179)
Q Consensus 59 ~w~gv-~c~~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p 137 (179)
.|.++ .|.. ++++.|++++|++.+ +|..+ +++|+.|++++|.++ .+| .. +++|+.|++++|.+++ +|
T Consensus 49 ~~~~l~~C~~---~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~-l~~L~~L~Ls~N~l~~-ip 116 (571)
T 3cvr_A 49 AVSLLKECLI---NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---EL-PASLEYLDACDNRLST-LP 116 (571)
T ss_dssp HHHHHHHHHH---TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CC-CTTCCEEECCSSCCSC-CC
T ss_pred hhhhcccccc---CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cc-cCCCCEEEccCCCCCC-cc
Confidence 68888 6753 468888888888875 66654 367777777777777 666 22 6677777777777774 66
Q ss_pred hhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 138 TNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 138 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
. +.. +|+.|++++|++++ +|. .+++|+.|++++|
T Consensus 117 ~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNN 150 (571)
T ss_dssp C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCC
Confidence 5 443 66666666666663 554 3455555555555
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=2.6e-14 Score=104.19 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=86.0
Q ss_pred cEEEEEecCCCceeeCCc------cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCcc
Q 042065 72 KVLNLRLTDMGLKGQFPR------GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY 145 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~------~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~ 145 (179)
+++.++++.+.+.|.+|. .+..+++|++|++++|.++ .+| .+.. +++|+.|++++|.++ .+|..+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCc
Confidence 345555555556655554 8889999999999999998 588 7887 899999999999999 78988888899
Q ss_pred CCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 146 LNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 146 L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
|+.|++++|++++ +| .+..+++|++|++++|+
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence 9999999999994 66 68889999999999873
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=3.3e-11 Score=101.71 Aligned_cols=99 Identities=23% Similarity=0.398 Sum_probs=52.9
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|+|++|.+.+ +| .+..+++|+.|+|++|.+. .++ .+.. +++|+.|+|++|.+++ + ..+..+++|+.|+
T Consensus 87 ~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITD-I-TVLSRLTKLDTLS 159 (605)
T ss_dssp TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCSEEECCSSCCCC-C-GGGGSCTTCSEEE
T ss_pred CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCc-cccC-CCccCEEECCCCccCC-c-hhhcccCCCCEEE
Confidence 345555555555543 22 4555566666666666665 232 3444 5556666666665553 2 3455555666666
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
|++|++++..| +..+++|+.|+|++|
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCC
Confidence 66665553322 555555555555555
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.24 E-value=2.5e-11 Score=95.08 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=83.5
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+ ++. +..+++|++|++++|.++ .++ .+.. +++|+.|++++|.+++ +| .+..+++|+.|+
T Consensus 221 ~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~-l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ 293 (347)
T 4fmz_A 221 TRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQIS-DIN-AVKD-LTKLKMLNVGSNQISD-IS-VLNNLSQLNSLF 293 (347)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTT-CTTCCEEECCSSCCCC-CG-GGGGCTTCSEEE
T ss_pred CcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccC-CCh-hHhc-CCCcCEEEccCCccCC-Ch-hhcCCCCCCEEE
Confidence 568888888888874 333 778889999999999887 453 4555 8889999999999884 44 578889999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..|..+..+++|++|++++|+
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 99999987778889999999999999884
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.23 E-value=1.1e-12 Score=102.20 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=13.7
Q ss_pred CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC
Q 042065 93 NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130 (179)
Q Consensus 93 ~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n 130 (179)
.+++|++|++++|.+++..|..+.. +++|++|++++|
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~ 152 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGC 152 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCC
Confidence 3333333333333333333333333 333333333333
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.23 E-value=4.3e-12 Score=98.91 Aligned_cols=106 Identities=23% Similarity=0.208 Sum_probs=91.8
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCC-ChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGS-LPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~-~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.+++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+.. +++|++|++++|.+++..|..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQ-CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTT-BCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhh-CCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 5688899999988876555 56799999999999999865 7777777 8999999999999998888899999999999
Q ss_pred ecccc-cCccc-CchhhcCCCCCCeEeccCC
Q 042065 150 KLDHN-RFSGQ-IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 150 ~l~~n-~l~g~-~p~~~~~l~~L~~L~l~~N 178 (179)
++++| .+++. +|..+..+++|++|++++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 99999 68753 6777888999999999887
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.21 E-value=3.3e-11 Score=98.41 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=65.2
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+ +| +..+++|++|++++|.+++ +| +.. +++|++|++++|.+++ +| ++.+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~-l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTP-LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTT-CTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCC-CCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 457777777777765 33 6667777777777777763 43 455 6777777777777774 44 66777777777
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+++|++++ +| ++.+++|++|++++|
T Consensus 134 l~~N~l~~-l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 134 CARNTLTE-ID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp CTTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred CCCCccce-ec--cccCCcCCEEECCCC
Confidence 77777774 33 667777777777776
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=4e-11 Score=101.16 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=87.7
Q ss_pred CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
..+++.|+|++|.+.+ + +.+..+++|+.|+|++|.+++ + ..+.. +++|+.|+|++|.+.+..| +..+++|+.|
T Consensus 108 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGS-CTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcc-cCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 4679999999999985 3 468899999999999999984 4 56666 8999999999999996555 8999999999
Q ss_pred ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+|++|++++ +| .+..+++|+.|++++|+
T Consensus 181 ~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 181 YLSKNHISD-LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred ECcCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence 999999994 54 68899999999999873
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=4.4e-12 Score=101.02 Aligned_cols=108 Identities=18% Similarity=0.285 Sum_probs=72.4
Q ss_pred CcEEEEEecCCCce--e---eCCccCcCCCCCcEEEcccCCCC----CCChhHHHhcccCccEEEcccCcCCcc----cc
Q 042065 71 NKVLNLRLTDMGLK--G---QFPRGIRNCSSMTGLDLSSNKLY----GSLPDDISKLVGFLTGLDLSSNNFSGS----IP 137 (179)
Q Consensus 71 ~~l~~L~l~~~~l~--~---~~p~~l~~l~~L~~L~L~~n~l~----g~~p~~~~~~l~~L~~L~L~~n~l~g~----~p 137 (179)
.++++|++++|.+. | ..+..+..+++|+.|++++|.++ +.+|..+.. +++|+.|+|++|.+++. +|
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCCCCchhhHHHHH
Confidence 35667777777665 2 22335666777777777777774 356666666 67777777777777754 45
Q ss_pred hhcc--CCccCCEeecccccCcc----cCchhh-cCCCCCCeEeccCCC
Q 042065 138 TNLA--NCSYLNSLKLDHNRFSG----QIPPQL-GQLGRLKSFSVANNL 179 (179)
Q Consensus 138 ~~~~--~l~~L~~L~l~~n~l~g----~~p~~~-~~l~~L~~L~l~~N~ 179 (179)
..+. .+++|+.|++++|.+++ .+|..+ .++++|++|++++|+
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 5553 37777888888877775 366666 457778888877763
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.17 E-value=5.2e-11 Score=97.16 Aligned_cols=101 Identities=30% Similarity=0.424 Sum_probs=48.5
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc-------------
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP------------- 137 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p------------- 137 (179)
.+++.|++++|.+.+. ++ +..+++|+.|++++|.+.+ ++. +.. +++|+.|++++|.+++..|
T Consensus 265 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~-l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 265 TKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLED-ISP-ISN-LKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339 (466)
T ss_dssp TTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSC-CGG-GGG-CTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred CCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccC-chh-hcC-CCCCCEEECcCCcCCCchhhccCccCCEeECC
Confidence 3455556655555532 22 4445555555555555542 222 333 4445555555554443322
Q ss_pred -------hhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 138 -------TNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 138 -------~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
..+..+++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 340 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 340 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 234445555555555555554333 455555555555544
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.17 E-value=9.6e-11 Score=95.56 Aligned_cols=100 Identities=23% Similarity=0.371 Sum_probs=82.5
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++++|.+.+..+ +..+++|+.|++++|.++ .+|. +.. +++|+.|++++|.+++. +. +..+++|+.|+
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~-l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 315 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LAG-LTALTNLELNENQLEDI-SP-ISNLKNLTYLT 315 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GTT-CTTCSEEECCSSCCSCC-GG-GGGCTTCSEEE
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-ccC-CCccCeEEcCCCcccCc-hh-hcCCCCCCEEE
Confidence 579999999999986543 889999999999999998 4554 666 89999999999999954 43 78899999999
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|++++..| +..+++|+.|++++|+
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCc
Confidence 99999986544 6677777777777763
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=5.9e-11 Score=93.13 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=72.9
Q ss_pred CcEEEEEecC-CCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTD-MGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.+++.|+|++ |.+.+..+..|..+++|++|+|++|.+++..|..+.. +++|+.|+|++|++++..+..+..++ |+.|
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-TPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS-CSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC-CcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 4699999996 9999877788999999999999999999766777777 99999999999999954444455555 9999
Q ss_pred ecccccCc
Q 042065 150 KLDHNRFS 157 (179)
Q Consensus 150 ~l~~n~l~ 157 (179)
++.+|++.
T Consensus 109 ~l~~N~~~ 116 (347)
T 2ifg_A 109 VLSGNPLH 116 (347)
T ss_dssp ECCSSCCC
T ss_pred EeeCCCcc
Confidence 99999987
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.15 E-value=5.9e-11 Score=99.45 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=51.3
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccC--------------------ccEEEcccCc
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--------------------LTGLDLSSNN 131 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~--------------------L~~L~L~~n~ 131 (179)
+++.|++++|.+++ +|. .+++|+.|++++|.++ .+|. . +++ |+.|+|++|.
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~-l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE---L-PTSLEVLSVRNNQLTFLPELPESLEALDVSTNL 191 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---C-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC---c-CCCcCEEECCCCCCCCcchhhCCCCEEECcCCC
Confidence 45555555555553 333 3445555555555554 2443 1 344 4555555555
Q ss_pred CCcccchhccCCccC-------CEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 132 FSGSIPTNLANCSYL-------NSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 132 l~g~~p~~~~~l~~L-------~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
++ .+|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|+
T Consensus 192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred CC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 55 4444 332 45 66677777776 567777777777777777774
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.14 E-value=2e-11 Score=96.54 Aligned_cols=108 Identities=25% Similarity=0.283 Sum_probs=71.2
Q ss_pred cEEEEEecCCCceeeCCccCcCC-----CCCcEEEcccCCCCCCChhHHHhc---c-cCccEEEcccCcCCcccchhc--
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNC-----SSMTGLDLSSNKLYGSLPDDISKL---V-GFLTGLDLSSNNFSGSIPTNL-- 140 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l-----~~L~~L~L~~n~l~g~~p~~~~~~---l-~~L~~L~L~~n~l~g~~p~~~-- 140 (179)
++++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+... + ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 67788888887776555555543 778888888888776666555441 2 678888888888775444333
Q ss_pred --cC-CccCCEeecccccCccc----CchhhcCCC-CCCeEeccCCC
Q 042065 141 --AN-CSYLNSLKLDHNRFSGQ----IPPQLGQLG-RLKSFSVANNL 179 (179)
Q Consensus 141 --~~-l~~L~~L~l~~n~l~g~----~p~~~~~l~-~L~~L~l~~N~ 179 (179)
.. .++|++|++++|+++.. ++..+..++ +|++|++++|+
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 23 35788888888887743 334445554 78888888774
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=1.8e-11 Score=97.41 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=37.7
Q ss_pred CCCcEEEcccCCCC-CCCh---hHHHhcccCccEEEcccCcCC--c---ccchhccCCccCCEeecccccCc----ccCc
Q 042065 95 SSMTGLDLSSNKLY-GSLP---DDISKLVGFLTGLDLSSNNFS--G---SIPTNLANCSYLNSLKLDHNRFS----GQIP 161 (179)
Q Consensus 95 ~~L~~L~L~~n~l~-g~~p---~~~~~~l~~L~~L~L~~n~l~--g---~~p~~~~~l~~L~~L~l~~n~l~----g~~p 161 (179)
++|++|++++|.++ +.+| ..+.. +++|+.|++++|.++ | .+|..+..+++|+.|++++|.++ +.+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQS-HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHH-CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHh-CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 44555555555544 2223 22333 444555555555444 1 12224444555555555555553 3344
Q ss_pred hhhcCCCCCCeEeccCC
Q 042065 162 PQLGQLGRLKSFSVANN 178 (179)
Q Consensus 162 ~~~~~l~~L~~L~l~~N 178 (179)
..+..+++|++|++++|
T Consensus 238 ~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHGGGCTTCCEEECTTC
T ss_pred HHHccCCCcCEEECCCC
Confidence 44444555555555544
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=2.9e-10 Score=92.77 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=51.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.++++|++++|.+.+ +| .+..+++|++|++++|.++ .+|.. ..+|++|++++|.+++ +| .++.+++|+.|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 467777777777774 56 4777777888888887777 35542 3456777777777663 55 456666666665
Q ss_pred cccccCc
Q 042065 151 LDHNRFS 157 (179)
Q Consensus 151 l~~n~l~ 157 (179)
+++|+++
T Consensus 202 l~~N~l~ 208 (454)
T 1jl5_A 202 ADNNSLK 208 (454)
T ss_dssp CCSSCCS
T ss_pred CCCCcCC
Confidence 5555554
No 129
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.08 E-value=3.6e-10 Score=92.32 Aligned_cols=77 Identities=27% Similarity=0.365 Sum_probs=37.0
Q ss_pred cCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCC
Q 042065 92 RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLK 171 (179)
Q Consensus 92 ~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~ 171 (179)
..+++|+.|++++|.++ .+| +.. +++|+.|++++|.+++ + .++.+++|+.|++++|++++ +| ++.+++|+
T Consensus 167 ~~l~~L~~L~ls~n~l~-~l~--l~~-l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKIT-ELD--VSQ-NKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp TTCTTCCEEECCSSCCC-CCC--CTT-CTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred ccCCcCCEEECCCCccc-eec--ccc-CCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 34444455555555444 233 233 4445555555555442 2 14445555555555555553 44 44555555
Q ss_pred eEeccCC
Q 042065 172 SFSVANN 178 (179)
Q Consensus 172 ~L~l~~N 178 (179)
.|++++|
T Consensus 237 ~L~l~~N 243 (457)
T 3bz5_A 237 YFDCSVN 243 (457)
T ss_dssp EEECCSS
T ss_pred EEEeeCC
Confidence 5555554
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.07 E-value=5.6e-11 Score=94.01 Aligned_cols=108 Identities=26% Similarity=0.279 Sum_probs=88.0
Q ss_pred CcEEEEEecCCCceeeCC----ccCcCCC-CCcEEEcccCCCCCCChhHHHhcc-----cCccEEEcccCcCCcccchh-
Q 042065 71 NKVLNLRLTDMGLKGQFP----RGIRNCS-SMTGLDLSSNKLYGSLPDDISKLV-----GFLTGLDLSSNNFSGSIPTN- 139 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p----~~l~~l~-~L~~L~L~~n~l~g~~p~~~~~~l-----~~L~~L~L~~n~l~g~~p~~- 139 (179)
.++++|++++|.+....+ ..+..++ +|++|++++|.+++..+..+.. + ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-ILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH-HHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH-HHhccCCCccEEECcCCcCChHHHHHH
Confidence 459999999999986555 6677888 8999999999999777877776 4 89999999999999766654
Q ss_pred ---ccCC-ccCCEeecccccCcccCchhhc----C-CCCCCeEeccCCC
Q 042065 140 ---LANC-SYLNSLKLDHNRFSGQIPPQLG----Q-LGRLKSFSVANNL 179 (179)
Q Consensus 140 ---~~~l-~~L~~L~l~~n~l~g~~p~~~~----~-l~~L~~L~l~~N~ 179 (179)
+..+ ++|+.|++++|++++..+..+. . .++|++|++++|+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 3444 8999999999999865554443 3 3699999999985
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.06 E-value=3.7e-10 Score=95.53 Aligned_cols=75 Identities=31% Similarity=0.354 Sum_probs=62.8
Q ss_pred CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEe
Q 042065 95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFS 174 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~ 174 (179)
++|+.|++++|.++ .+| .. +++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~-l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VL-PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CC-CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCCccC-cCC---CC-CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 66788888888887 466 22 678888999998888 6776 5788999999999999 8899999999999999
Q ss_pred ccCCC
Q 042065 175 VANNL 179 (179)
Q Consensus 175 l~~N~ 179 (179)
+++|.
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 99984
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=3.9e-10 Score=88.81 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=83.0
Q ss_pred EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccch-hccCCccCCE-ee
Q 042065 74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNS-LK 150 (179)
Q Consensus 74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~-L~ 150 (179)
++++.++++++ .+|..+ .+++++|+|++|.++ .+|.. +.. +++|++|+|++|.+.+.+|. .|.+++++.. +.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~-l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTT-CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcC-CCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 35778899988 678765 468999999999998 78765 455 99999999999998767775 5788888775 56
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+..|+++...|..|..+++|++|++++|+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred ccCCcccccCchhhhhccccccccccccc
Confidence 67799996667788999999999999874
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.00 E-value=3.5e-10 Score=92.26 Aligned_cols=76 Identities=30% Similarity=0.385 Sum_probs=46.4
Q ss_pred CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcc--cCchhhcCC-----
Q 042065 95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSG--QIPPQLGQL----- 167 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g--~~p~~~~~l----- 167 (179)
++|++|++++|.++ .+|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 317 PSLEELNVSNNKLI-ELPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp TTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred CcCCEEECCCCccc-ccccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 46777777777776 35543 467788888888877 5666 46788888888888887 677777666
Q ss_pred --------CCCCeEeccCCC
Q 042065 168 --------GRLKSFSVANNL 179 (179)
Q Consensus 168 --------~~L~~L~l~~N~ 179 (179)
++|+.|++++|+
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp --------------------
T ss_pred ccccccccCcCCEEECCCCc
Confidence 678888888774
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.98 E-value=6.5e-11 Score=95.92 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=48.3
Q ss_pred CCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcccchhccC-----CccCCEeecccccCcc----cCch
Q 042065 96 SMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN-----CSYLNSLKLDHNRFSG----QIPP 162 (179)
Q Consensus 96 ~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~-----l~~L~~L~l~~n~l~g----~~p~ 162 (179)
+|+.|++++|.+++. ++..+.. +++|++|++++|.+++..+..+.. .++|+.|++++|++++ .+|.
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 455555555554432 3334444 566666666666665433333321 4567777777777764 5666
Q ss_pred hhcCCCCCCeEeccCCC
Q 042065 163 QLGQLGRLKSFSVANNL 179 (179)
Q Consensus 163 ~~~~l~~L~~L~l~~N~ 179 (179)
.+..+++|++|++++|+
T Consensus 393 ~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHCCCCCEEECCSSS
T ss_pred HHHhCCCccEEECCCCC
Confidence 66667777777777763
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.93 E-value=1.4e-10 Score=93.94 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=50.4
Q ss_pred cEEEEEecCCCceee----CCccCcCCCCCcEEEcccCCCCCCChhHHHhc----ccCccEEEcccCcCCcc----cchh
Q 042065 72 KVLNLRLTDMGLKGQ----FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKL----VGFLTGLDLSSNNFSGS----IPTN 139 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~----l~~L~~L~L~~n~l~g~----~p~~ 139 (179)
++++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+... .++|+.|++++|.+++. +|..
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 344444444444422 23333344555555555555432222222221 13555555555555532 3444
Q ss_pred ccCCccCCEeecccccCcccCchhhcC-----CCCCCeEeccCC
Q 042065 140 LANCSYLNSLKLDHNRFSGQIPPQLGQ-----LGRLKSFSVANN 178 (179)
Q Consensus 140 ~~~l~~L~~L~l~~n~l~g~~p~~~~~-----l~~L~~L~l~~N 178 (179)
+..+++|+.|++++|.+++..+..+.. .++|+.|++++|
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 455566666666666665433333321 456666666665
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.92 E-value=3.3e-09 Score=89.80 Aligned_cols=92 Identities=27% Similarity=0.313 Sum_probs=56.0
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 150 (179)
.+++.|++++|.++ .+|. .+++|++|++++|.++ .+|. . +++|++|++++|.++ .+|. .+++|+.|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~-l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---L-PPGLLELSIFSNPLT-HLPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---C-CTTCCEEEECSCCCC-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---C-CCCCCEEECcCCcCC-CCCC---CCCCcCEEE
Confidence 34666666666665 3444 3456666666666665 4554 2 566666666666666 3444 355666777
Q ss_pred cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~ 179 (179)
+++|+++ .+|.. +++|++|++++|+
T Consensus 128 L~~N~l~-~lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 128 IFGNQLT-SLPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp CCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred CCCCCCC-cCCCC---CCCCCEEECcCCc
Confidence 7777666 45543 3667777777763
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=2.4e-09 Score=85.32 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=40.4
Q ss_pred CCCcEEEcccCCCCC----CChhHHHhcccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCccc----Cch
Q 042065 95 SSMTGLDLSSNKLYG----SLPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSGQ----IPP 162 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g----~~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g~----~p~ 162 (179)
+.|+.|+|++|.++. .++..+.. .++|++|+|++|.++. .++..+...++|+.|++++|.++.. ++.
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 445555555555532 12222233 4555556665555542 1233444455566666666655421 223
Q ss_pred hhcCCCCCCeEeccCC
Q 042065 163 QLGQLGRLKSFSVANN 178 (179)
Q Consensus 163 ~~~~l~~L~~L~l~~N 178 (179)
.+...++|++|++++|
T Consensus 234 ~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 234 AAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHCSSCCEEECTTS
T ss_pred HHHhCCCCCEEeccCC
Confidence 3334456666666665
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=1.8e-08 Score=76.72 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=62.7
Q ss_pred CCCCCcEEEcccCCCCC--CChhHHHhcccCccEEEcccCcCCcccchhccCCc--cCCEeecccccCcccCch------
Q 042065 93 NCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCS--YLNSLKLDHNRFSGQIPP------ 162 (179)
Q Consensus 93 ~l~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~--~L~~L~l~~n~l~g~~p~------ 162 (179)
+++.|+.|+|++|.+++ .+|..+.. +++|+.|+|++|++.+. ..+..+. +|+.|++++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 47789999999999986 45566667 89999999999999853 3344444 899999999999877762
Q ss_pred -hhcCCCCCCeEec
Q 042065 163 -QLGQLGRLKSFSV 175 (179)
Q Consensus 163 -~~~~l~~L~~L~l 175 (179)
.+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 3667888888873
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=1.9e-09 Score=85.86 Aligned_cols=109 Identities=23% Similarity=0.223 Sum_probs=80.7
Q ss_pred CcEEEEEecCCCceeeCCccC-cCCCCCcEEEcccCCCCCCChhHHHhc----ccCccEEEcccCcCCc----ccchhcc
Q 042065 71 NKVLNLRLTDMGLKGQFPRGI-RNCSSMTGLDLSSNKLYGSLPDDISKL----VGFLTGLDLSSNNFSG----SIPTNLA 141 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l-~~l~~L~~L~L~~n~l~g~~p~~~~~~----l~~L~~L~L~~n~l~g----~~p~~~~ 141 (179)
.++++|+|++|.+.......+ ..+++|+.|+|++|.++..-...+... .+.|+.|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 579999999998864322222 235689999999999974433444321 4679999999999874 3455567
Q ss_pred CCccCCEeecccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065 142 NCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 142 ~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N~ 179 (179)
.+++|++|++++|.++.. ++..+...++|+.|++++|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 889999999999998742 35566777899999999985
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.67 E-value=5.2e-09 Score=87.20 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=61.2
Q ss_pred CcCCCCCcEEEcccCC--CCCCChhHHHhcccCccEEEcccCcCCc-ccchhccCCccCCEeecccccCccc-CchhhcC
Q 042065 91 IRNCSSMTGLDLSSNK--LYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNSLKLDHNRFSGQ-IPPQLGQ 166 (179)
Q Consensus 91 l~~l~~L~~L~L~~n~--l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~l~~n~l~g~-~p~~~~~ 166 (179)
+..+++|+.|+++.+. +++..+..+...+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 4456777777776433 5555555555546778888888888775 3455567788888888888887644 3444556
Q ss_pred CCCCCeEeccCCC
Q 042065 167 LGRLKSFSVANNL 179 (179)
Q Consensus 167 l~~L~~L~l~~N~ 179 (179)
+++|++|++++|+
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 7888888888874
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=1.9e-08 Score=72.32 Aligned_cols=109 Identities=15% Similarity=0.232 Sum_probs=83.0
Q ss_pred CCcEEEEEecCC-Cceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcc----c
Q 042065 70 ENKVLNLRLTDM-GLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGS----I 136 (179)
Q Consensus 70 ~~~l~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~----~ 136 (179)
...+++|+|++| .+... +...+...++|++|+|++|.+... +...+.. .+.|++|+|++|.+... +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh-CCCcCEEECcCCcCCHHHHHHH
Confidence 357999999999 87632 344566678999999999999732 3334444 57899999999999842 4
Q ss_pred chhccCCccCCEeec--ccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065 137 PTNLANCSYLNSLKL--DHNRFSGQ----IPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 137 p~~~~~l~~L~~L~l--~~n~l~g~----~p~~~~~l~~L~~L~l~~N~ 179 (179)
...+...+.|++|++ ++|.+... +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 566777889999999 88999743 33455566899999999884
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=8.9e-08 Score=74.57 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=84.7
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCcc-EEEcccCcCCcccchhccCCccCCEe
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLT-GLDLSSNNFSGSIPTNLANCSYLNSL 149 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~-~L~L~~n~l~g~~p~~~~~l~~L~~L 149 (179)
.+++.+++++|+++..-+..|.++++|+.+++.+| +. .++...+..+++|+ .+++.. .++..-+..|.+|++|+.+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 47999999999988666677999999999999998 76 67766665599999 999998 6773445689999999999
Q ss_pred ecccccCcccCchhhcCCCCCCeEec
Q 042065 150 KLDHNRFSGQIPPQLGQLGRLKSFSV 175 (179)
Q Consensus 150 ~l~~n~l~g~~p~~~~~l~~L~~L~l 175 (179)
+++.|+++..-+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999998444567889999999874
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.53 E-value=2.9e-08 Score=82.70 Aligned_cols=19 Identities=5% Similarity=0.204 Sum_probs=10.7
Q ss_pred CchhhcCCCCCCeEeccCC
Q 042065 160 IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 160 ~p~~~~~l~~L~~L~l~~N 178 (179)
+|..+..+++|++|++++|
T Consensus 285 l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp GGGGGGGGGGCCEEEETTC
T ss_pred HHHHHhhcCCCcEEecCCC
Confidence 3444445556666666655
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.38 E-value=4.9e-08 Score=81.27 Aligned_cols=88 Identities=16% Similarity=0.224 Sum_probs=59.5
Q ss_pred CcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhc-cCCccCCEeecccccCcccCch-hhcCCC
Q 042065 91 IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYLNSLKLDHNRFSGQIPP-QLGQLG 168 (179)
Q Consensus 91 l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~L~l~~n~l~g~~p~-~~~~l~ 168 (179)
+..+++|+.|++++ .+++..+..+...+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 44567777777766 55544445554446778888888888775444444 5678888888888888643333 334578
Q ss_pred CCCeEeccCCC
Q 042065 169 RLKSFSVANNL 179 (179)
Q Consensus 169 ~L~~L~l~~N~ 179 (179)
+|+.|++++|+
T Consensus 507 ~L~~L~l~~~~ 517 (594)
T 2p1m_B 507 TMRSLWMSSCS 517 (594)
T ss_dssp GSSEEEEESSC
T ss_pred CCCEEeeeCCC
Confidence 88888888874
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=2.2e-07 Score=70.67 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=62.7
Q ss_pred CcEEEEEecCCCcee--eCCccCcCCCCCcEEEcccCCCCCCChhHHHhccc--CccEEEcccCcCCcccch-------h
Q 042065 71 NKVLNLRLTDMGLKG--QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVG--FLTGLDLSSNNFSGSIPT-------N 139 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~--~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~--~L~~L~L~~n~l~g~~p~-------~ 139 (179)
.++++|+|++|.+.+ .+|..+..+++|+.|+|++|.+++. ..+.. +. .|++|+|.+|.+.+.+|. .
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccCCcceEEccCCcCccccCcchhHHHHH
Confidence 579999999999987 4566677899999999999999843 33443 44 899999999999987763 3
Q ss_pred ccCCccCCEeec
Q 042065 140 LANCSYLNSLKL 151 (179)
Q Consensus 140 ~~~l~~L~~L~l 151 (179)
+..+++|+.|+-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 667899998763
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.31 E-value=1.2e-07 Score=78.86 Aligned_cols=107 Identities=20% Similarity=0.132 Sum_probs=66.3
Q ss_pred CcEEEEEecCCCceeeCCccCc-CCCCCcEEEcccC-CCCCC-ChhHHHhcccCccEEEcccCcCCcccchhc----cCC
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSN-KLYGS-LPDDISKLVGFLTGLDLSSNNFSGSIPTNL----ANC 143 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n-~l~g~-~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~----~~l 143 (179)
.++++|+++++.+.+..+..+. .+++|++|++++| .++.. ++..... +++|++|++++|.+++..+..+ ..+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT-CRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH-CTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh-CCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4678888888877655544444 5778888888877 44322 3333335 7788888888887665433333 356
Q ss_pred ccCCEeeccccc--Ccc-cCchhhcCCCCCCeEeccCC
Q 042065 144 SYLNSLKLDHNR--FSG-QIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 144 ~~L~~L~l~~n~--l~g-~~p~~~~~l~~L~~L~l~~N 178 (179)
++|+.|+++.|. +.. .++..+..+++|+.|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 678888887775 221 11222344677777777765
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=3.1e-06 Score=60.63 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=68.8
Q ss_pred CccCcCCCCCcEEEcccC-CCCCC----ChhHHHhcccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCcc
Q 042065 88 PRGIRNCSSMTGLDLSSN-KLYGS----LPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSG 158 (179)
Q Consensus 88 p~~l~~l~~L~~L~L~~n-~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g 158 (179)
...+...+.|++|+|++| .+... +...+.. .++|++|+|++|.+.. .+...+...+.|++|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 344667889999999999 88632 2334444 5789999999999874 234456667899999999999974
Q ss_pred c----CchhhcCCCCCCeEec--cCCC
Q 042065 159 Q----IPPQLGQLGRLKSFSV--ANNL 179 (179)
Q Consensus 159 ~----~p~~~~~l~~L~~L~l--~~N~ 179 (179)
. +...+...++|++|++ ++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 3 4566777789999999 6674
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=5.9e-06 Score=64.18 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCC-EeecccccCcccCchhhcCCCCCCe
Q 042065 94 CSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN-SLKLDHNRFSGQIPPQLGQLGRLKS 172 (179)
Q Consensus 94 l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~-~L~l~~n~l~g~~p~~~~~l~~L~~ 172 (179)
+++|+.+++++|.++ .+|...+..+.+|+.+++..| ++..-+..|.++++|+ .+.+.. .++..-+..|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 789999999999998 888776665999999999998 6633345689999999 999988 676344577899999999
Q ss_pred EeccCCC
Q 042065 173 FSVANNL 179 (179)
Q Consensus 173 L~l~~N~ 179 (179)
+++.+|+
T Consensus 302 l~l~~n~ 308 (329)
T 3sb4_A 302 VLATGDK 308 (329)
T ss_dssp EEECSSC
T ss_pred EEeCCCc
Confidence 9997653
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=5.4e-06 Score=59.08 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=64.3
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCC-CCCCChhHHHhc---ccCccEEEcccCc-CCcccchhccCCcc
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK-LYGSLPDDISKL---VGFLTGLDLSSNN-FSGSIPTNLANCSY 145 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~g~~p~~~~~~---l~~L~~L~L~~n~-l~g~~p~~~~~l~~ 145 (179)
-++++|+++++.++..--..+..+++|+.|+|++|. ++..--..+..+ .++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999998765434557789999999999995 664333445441 2469999999985 66433345778999
Q ss_pred CCEeeccccc-Cc
Q 042065 146 LNSLKLDHNR-FS 157 (179)
Q Consensus 146 L~~L~l~~n~-l~ 157 (179)
|++|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999874 54
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=1.1e-06 Score=69.73 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=26.3
Q ss_pred CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHh-cccCccEEEcc
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISK-LVGFLTGLDLS 128 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~L~ 128 (179)
++++.|+++++.-. .++. + .+++|+.|++..+.++......+.. .+++|+.|+|.
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 46777777766211 2222 2 2555666666555554222222321 14555555553
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=1.2e-05 Score=57.31 Aligned_cols=83 Identities=8% Similarity=0.111 Sum_probs=62.1
Q ss_pred CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCc-CCcccchhccCC----ccCCEeecccc-cCcccCchhhcCCC
Q 042065 95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN-FSGSIPTNLANC----SYLNSLKLDHN-RFSGQIPPQLGQLG 168 (179)
Q Consensus 95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l----~~L~~L~l~~n-~l~g~~p~~~~~l~ 168 (179)
-.|+.||++++.++..--..+.. +++|+.|+|++|. ++..--..+..+ ++|++|+++++ +++..==..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 46999999999987544455666 8999999999996 664333345554 47999999997 47733224467889
Q ss_pred CCCeEeccCC
Q 042065 169 RLKSFSVANN 178 (179)
Q Consensus 169 ~L~~L~l~~N 178 (179)
+|+.|+++++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 9999999886
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=2.5e-05 Score=61.89 Aligned_cols=108 Identities=11% Similarity=0.125 Sum_probs=71.4
Q ss_pred CcEEEEEecCCCceeeCCccCc--CCCCCcEEEccc--CCCCCC-----ChhHH--HhcccCccEEEcccCcCCcccchh
Q 042065 71 NKVLNLRLTDMGLKGQFPRGIR--NCSSMTGLDLSS--NKLYGS-----LPDDI--SKLVGFLTGLDLSSNNFSGSIPTN 139 (179)
Q Consensus 71 ~~l~~L~l~~~~l~~~~p~~l~--~l~~L~~L~L~~--n~l~g~-----~p~~~--~~~l~~L~~L~L~~n~l~g~~p~~ 139 (179)
.+++.|++..+.+.......+. .+++|+.|+|+. |...+. +-..+ .. +++|+.|+|.+|.+....+..
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~-~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR-FPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT-CTTCCEEEEESCTTHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC-CCCcCEEeCCCCCCchHHHHH
Confidence 5788899988776533222232 688999999863 221111 11111 13 688999999999887544433
Q ss_pred c---cCCccCCEeecccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065 140 L---ANCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANNL 179 (179)
Q Consensus 140 ~---~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N~ 179 (179)
+ ..+++|++|+++.|.+... ++..+..+++|+.|++++|.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3 3578999999999998753 34444567889999998873
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.42 E-value=0.00034 Score=55.99 Aligned_cols=102 Identities=10% Similarity=0.139 Sum_probs=54.3
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC----CCChhHHHhcccCccEEEcccCcCCcccc-hhccCCccC
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY----GSLPDDISKLVGFLTGLDLSSNNFSGSIP-TNLANCSYL 146 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~----g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L 146 (179)
+++.+.+. ++++..-...|.++++|+.+++.+|.+. ..++...+..+++|+.+.+.. .++ .++ ..|.+|++|
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L 325 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKV 325 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCc
Confidence 34555552 2333333456667777777777666543 124443333366677777663 344 333 345666666
Q ss_pred CEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065 147 NSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 147 ~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
+.+.+..+ ++..-+..|..+ +|+.+++.+|
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 66666443 432223445555 6666666554
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.39 E-value=0.00052 Score=54.92 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=31.5
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcc
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLS 128 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~ 128 (179)
+++.+.+.. .+...-+..|.++++|+.+++..|.++ .+|...+. ...|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeC
Confidence 456666654 444334456777777777777776665 55554444 4455555554
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.18 E-value=0.00054 Score=46.15 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=42.6
Q ss_pred EEEecCCCce-eeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCC
Q 042065 75 NLRLTDMGLK-GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFS 133 (179)
Q Consensus 75 ~L~l~~~~l~-~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~ 133 (179)
.++.++++++ ..+|..+ -++|++|+|++|.++ .+|...+..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 5666777775 2456543 246999999999998 787766555899999999999775
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.00097 Score=44.86 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=26.3
Q ss_pred cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC
Q 042065 72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY 108 (179)
Q Consensus 72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~ 108 (179)
+++.|+|++|.++..-+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777788887777544555667777788888777664
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00094 Score=48.31 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCcEEEEEecCC-Cceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCc----cc
Q 042065 70 ENKVLNLRLTDM-GLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSG----SI 136 (179)
Q Consensus 70 ~~~l~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g----~~ 136 (179)
...+++|+|+++ .+... +-..+..-+.|+.|+|++|.+... +-..+.. -..|+.|+|+.|.+.. .+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCCHHHHHHH
Confidence 357899999985 65421 233455567899999999998632 3334444 4679999999999984 23
Q ss_pred chhccCCccCCEeecccc---cCcc----cCchhhcCCCCCCeEeccCC
Q 042065 137 PTNLANCSYLNSLKLDHN---RFSG----QIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 137 p~~~~~l~~L~~L~l~~n---~l~g----~~p~~~~~l~~L~~L~l~~N 178 (179)
-+.+..-+.|+.|+|++| ++.. .+...+..-+.|+.|+++.|
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 344555667999999854 4432 13344555678899988765
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.50 E-value=0.013 Score=46.36 Aligned_cols=84 Identities=15% Similarity=0.386 Sum_probs=52.7
Q ss_pred ccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCccc-chhccCCccCCEeecccccCcccC-chhhcC
Q 042065 89 RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSI-PTNLANCSYLNSLKLDHNRFSGQI-PPQLGQ 166 (179)
Q Consensus 89 ~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L~l~~n~l~g~~-p~~~~~ 166 (179)
..|.+++.|+.+.+. +.+. .++...+..+.+|+.+.+..+ ++ .+ ...|.+|.+|+.+.+..+ ++ .+ ...|.+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~ 355 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSN 355 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTT
T ss_pred cccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhC
Confidence 345566677777664 3344 555555544777888887654 44 33 345777888888887644 44 33 355777
Q ss_pred CCCCCeEeccCC
Q 042065 167 LGRLKSFSVANN 178 (179)
Q Consensus 167 l~~L~~L~l~~N 178 (179)
+.+|+.+++.+|
T Consensus 356 C~~L~~i~~~~~ 367 (394)
T 4gt6_A 356 CTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEESSC
T ss_pred CCCCCEEEECCc
Confidence 788888877664
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.41 E-value=0.0036 Score=45.25 Aligned_cols=87 Identities=9% Similarity=0.168 Sum_probs=61.5
Q ss_pred CcCCCCCcEEEcccC-CCCCC----ChhHHHhcccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCccc--
Q 042065 91 IRNCSSMTGLDLSSN-KLYGS----LPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSGQ-- 159 (179)
Q Consensus 91 l~~l~~L~~L~L~~n-~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g~-- 159 (179)
+.+-+.|+.|+|++| .+... +-..+.. -..|+.|+|++|.+.. .+.+.+..-+.|+.|+|+.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 345578999999986 77521 2233333 4679999999999973 3334455667899999999999732
Q ss_pred --CchhhcCCCCCCeEeccCC
Q 042065 160 --IPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 160 --~p~~~~~l~~L~~L~l~~N 178 (179)
+-+.+..-+.|+.|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 2344555678999999864
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.24 E-value=0.015 Score=45.52 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=43.3
Q ss_pred ccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc-hhccCCccCCEeecccccCcccC-chhhcC
Q 042065 89 RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP-TNLANCSYLNSLKLDHNRFSGQI-PPQLGQ 166 (179)
Q Consensus 89 ~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l~~n~l~g~~-p~~~~~ 166 (179)
..|.++..|+.+.+..+ +. .++...+..+.+|+.+.+..+.++ .++ ..|.++.+|+.+.+..+ ++ .+ ...|.+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~ 331 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKN 331 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT
T ss_pred cccceeehhcccccccc-ce-eccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhC
Confidence 34455555666555432 32 344333333566666666666555 333 34666666666666543 33 22 234555
Q ss_pred CCCCCeEecc
Q 042065 167 LGRLKSFSVA 176 (179)
Q Consensus 167 l~~L~~L~l~ 176 (179)
+.+|+.+.+.
T Consensus 332 C~~L~~i~ip 341 (379)
T 4h09_A 332 CKALSTISYP 341 (379)
T ss_dssp CTTCCCCCCC
T ss_pred CCCCCEEEEC
Confidence 6666655553
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.98 E-value=0.012 Score=46.41 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=39.5
Q ss_pred cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCccc-chhccCCccCCEeecccccCcccCchhhcCCC
Q 042065 90 GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSI-PTNLANCSYLNSLKLDHNRFSGQIPPQLGQLG 168 (179)
Q Consensus 90 ~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~ 168 (179)
.|..+.+|+.+.+..+ +. .++...+..+.+|+.+++..+ ++ .+ ...|.++.+|+.+.+..+ ++..-...|..+.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 3455556666665443 33 343333322555666665433 33 23 234555666666665544 3311123455555
Q ss_pred CCCeEecc
Q 042065 169 RLKSFSVA 176 (179)
Q Consensus 169 ~L~~L~l~ 176 (179)
+|+.+++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 66655553
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.81 E-value=0.019 Score=45.29 Aligned_cols=98 Identities=17% Similarity=0.315 Sum_probs=62.5
Q ss_pred EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc-hhccCCccCCEeec
Q 042065 73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP-TNLANCSYLNSLKL 151 (179)
Q Consensus 73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l 151 (179)
++.+.+. +.+...-...|.++.+|+.+++..+ ++ .+....+..+.+|+.+.+..+ ++ .+. ..|.+|++|+.+.+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEE
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEE
Confidence 4444443 2333333456888999999999764 55 566555544899999999765 55 444 57899999999999
Q ss_pred ccccCcccCchhhcCCCCCCeEeccCC
Q 042065 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178 (179)
Q Consensus 152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N 178 (179)
.++.... ..+....+|+.+.+..|
T Consensus 365 ~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 365 SGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp SSCHHHH---HTCBCCCCC--------
T ss_pred CCceeeh---hhhhccCCCCEEEeCCC
Confidence 9876542 45666778888877654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.18 E-value=0.03 Score=44.22 Aligned_cols=95 Identities=14% Similarity=0.209 Sum_probs=51.7
Q ss_pred EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065 73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152 (179)
Q Consensus 73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~ 152 (179)
++.+.+..+ ++..-...|.++.+|+.+++..+ ++ .+....+..+.+|+.+++..+ ++..-...|.+|++|+.+.+.
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 444444332 33222445667777777777543 44 454444433677777777655 442223356777777777776
Q ss_pred cccCcccCchhhcCCCCCCeE
Q 042065 153 HNRFSGQIPPQLGQLGRLKSF 173 (179)
Q Consensus 153 ~n~l~g~~p~~~~~l~~L~~L 173 (179)
.+ ++ .+...|.++++|+.+
T Consensus 375 ~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 375 KR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GG-GG-GGGGGBCTTCEEEEE
T ss_pred CC-CE-EhhheecCCCCCcEE
Confidence 44 22 233456666666543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.17 E-value=0.18 Score=39.24 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=58.2
Q ss_pred ccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc-hhccCCccCCEeecccccCcccCchhhcCC
Q 042065 89 RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP-TNLANCSYLNSLKLDHNRFSGQIPPQLGQL 167 (179)
Q Consensus 89 ~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l 167 (179)
..+.++..|+.+.+..+ ++ .+....+..+..|+.+.+..+ +. .++ ..+.++++|+.+.+..+.++..-...|.++
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCC
Confidence 34556677777777654 43 444444333677888887654 44 343 457889999999998888873334568888
Q ss_pred CCCCeEeccCC
Q 042065 168 GRLKSFSVANN 178 (179)
Q Consensus 168 ~~L~~L~l~~N 178 (179)
.+|+.+.+..+
T Consensus 310 ~~L~~i~lp~~ 320 (379)
T 4h09_A 310 VKLSSVTLPTA 320 (379)
T ss_dssp TTCCEEECCTT
T ss_pred CCCCEEEcCcc
Confidence 99999988643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.34 E-value=1.1e+02 Score=18.70 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=22.9
Q ss_pred CccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEccc
Q 042065 88 PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSS 129 (179)
Q Consensus 88 p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~ 129 (179)
...|.+++.|+.+.+-.+ ++ .+-...+..+.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 445777777777777653 22 33333333366777776654
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=23.66 E-value=18 Score=15.59 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=6.8
Q ss_pred CCcccceee
Q 042065 56 FICKFTGVE 64 (179)
Q Consensus 56 ~~c~w~gv~ 64 (179)
.-|+|.|+.
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 469998865
Done!