BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042066
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D0J|A Chain A, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|B Chain B, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|C Chain C, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|D Chain D, Crystal Structure Of Human Glcat-S Apo Form
Length = 246
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 2 HQRNVAL-----KHIEHHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQ 56
QRN L +H G++ FA N Y L F E+R WPV L+ +
Sbjct: 81 EQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR- 139
Query: 57 KVIIEGPVCDSSQVIGWH 74
E P+ ++ +V+GW+
Sbjct: 140 ---YERPLVENGKVVGWY 154
>pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1FGG|B Chain B, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
pdb|1KWS|B Chain B, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
Length = 261
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 18 GIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKK 77
G+V+FA N Y F+E+R WPV L+ + EGP +V+G+H
Sbjct: 114 GVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFH--- 166
Query: 78 LNNETDAKP-PIHVSSFAFNSSILWD 102
++P P+ ++ FA +L D
Sbjct: 167 -TAWEPSRPFPVDMAGFAVALPLLLD 191
>pdb|3CU0|A Chain A, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
pdb|3CU0|B Chain B, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
Length = 281
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 18 GIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKK 77
G+V+FA N Y F+E+R WPV L+ + EGP +V+G+H
Sbjct: 134 GVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFH--- 186
Query: 78 LNNETDAKP-PIHVSSFAFNSSILWD 102
++P P+ ++ FA +L D
Sbjct: 187 -TAWEPSRPFPVDMAGFAVALPLLLD 211
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 3 QRNVALKHIE-----HHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQK 57
QRN+AL+ + + G+V+FA N Y L F+E+R WPVA + +
Sbjct: 88 QRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR-- 145
Query: 58 VIIEGP-VCDSSQVIGW 73
E P V + +V+ W
Sbjct: 146 --YEAPRVNGAGKVVRW 160
>pdb|1DIO|A Chain A, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1DIO|L Chain L, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1EGM|A Chain A, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EGM|L Chain L, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EEX|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EGV|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGV|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1IWB|A Chain A, Crystal Structure Of Diol Dehydratase
pdb|1IWB|L Chain L, Crystal Structure Of Diol Dehydratase
pdb|1UC4|A Chain A, Structure Of Diol Dehydratase Complexed With (S)-1,2-
Propanediol
pdb|1UC4|L Chain L, Structure Of Diol Dehydratase Complexed With (S)-1,2-
Propanediol
pdb|1UC5|A Chain A, Structure Of Diol Dehydratase Complexed With (r)-1,2-
Propanediol
pdb|1UC5|L Chain L, Structure Of Diol Dehydratase Complexed With (r)-1,2-
Propanediol
pdb|3AUJ|A Chain A, Structure Of Diol Dehydratase Complexed With Glycerol
pdb|3AUJ|L Chain L, Structure Of Diol Dehydratase Complexed With Glycerol
Length = 554
Score = 29.6 bits (65), Expect = 0.63, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 88 IHVSSFA-FNSSILWDPERWGRPSSVQQTS-QVKTPYLLRMFGYECFSNTLGNHQTNKVF 145
+ V+ +A FN+ L + GRP + Q S + T L M G+ C++ T+ + T VF
Sbjct: 173 VAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVF 232
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
pdb|1KO0|A Chain A, Crystal Structure Of A D,L-Lysine Complex Of
Diaminopimelate Decarboxylase
Length = 425
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 9/126 (7%)
Query: 3 QRNVALKHIEHHRLSGIVHF----AGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKV 58
Q V + + + G HF AG +++ A + I A +L A +
Sbjct: 276 QSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVET 335
Query: 59 IIEGPVCDSSQVIGWHLKKLNNETDAKPPIHVSSFAFNSSILWDPERWGRPSSVQQTSQV 118
++ GP+C+S V + N ET A P + + +L D +G S S+
Sbjct: 336 VVAGPLCESGDVFTQQ-EGGNVETRALPEVKAGDYL----VLHDTGAYGASMSSNYNSRP 390
Query: 119 KTPYLL 124
P +L
Sbjct: 391 LLPEVL 396
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 36 ELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNETDAKP 86
E++++++Y WPV + K+K+ E P+ +VI + T A P
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIP 233
>pdb|3HVN|A Chain A, Crystal Structure Of Cytotoxin Protein Suilysin From
Streptococcus Suis
Length = 508
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 77 KLNNETDAKPPIHVSSFAFNSSILWDPERWGRPSSVQ 113
K N TD PP++VSS ++ S+ E R + VQ
Sbjct: 256 KRNGITDEVPPVYVSSVSYGRSMFIKLETSSRSTQVQ 292
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 19/122 (15%)
Query: 8 LKHIEHHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAW----PVALLSANKQKVIIEGP 63
LKH EH + + D A D +R +Y AW P+ Q + GP
Sbjct: 318 LKHTEHKNFA----------IIDAAMNDLIRP-ALYQAWQDIIPLRPRQGEAQTYDLVGP 366
Query: 64 VCDSSQVIGWHLKKLNNETDAKPPIHVSSFAFNSSILWDPERWGRPSSVQQTSQVKTPYL 123
VC++S +G + E D ++ F S ++ RP + YL
Sbjct: 367 VCETSDFLGKDRDLVLQEGDLLAVRSSGAYGFTMSSNYNT----RPRVAEVMVDGNKTYL 422
Query: 124 LR 125
+R
Sbjct: 423 VR 424
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,420,024
Number of Sequences: 62578
Number of extensions: 166510
Number of successful extensions: 368
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 21
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)