Query 042066
Match_columns 147
No_of_seqs 109 out of 241
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02458 transferase, transfer 100.0 3.4E-60 7.3E-65 407.5 11.2 140 1-140 187-336 (346)
2 cd00218 GlcAT-I Beta1,3-glucur 100.0 5.9E-58 1.3E-62 376.4 10.6 132 1-140 77-219 (223)
3 PF03360 Glyco_transf_43: Glyc 100.0 5.7E-55 1.2E-59 354.9 9.3 130 2-140 60-203 (207)
4 KOG1476 Beta-1,3-glucuronyltra 100.0 1.5E-50 3.3E-55 346.0 9.4 132 1-140 161-307 (330)
5 PF06858 NOG1: Nucleolar GTP-b 72.8 3.5 7.6E-05 28.0 2.3 34 3-40 5-44 (58)
6 PF00535 Glycos_transf_2: Glyc 71.2 4 8.8E-05 28.3 2.5 31 3-37 69-99 (169)
7 cd06423 CESA_like CESA_like is 70.8 6.4 0.00014 27.1 3.5 32 2-37 68-99 (180)
8 cd04186 GT_2_like_c Subfamily 64.7 7.6 0.00016 27.3 2.8 33 3-39 65-97 (166)
9 cd00761 Glyco_tranf_GTA_type G 63.8 11 0.00023 25.3 3.3 31 3-37 68-98 (156)
10 cd02511 Beta4Glucosyltransfera 59.8 8.8 0.00019 30.1 2.7 35 2-40 61-95 (229)
11 cd06438 EpsO_like EpsO protein 55.0 23 0.0005 26.4 4.2 35 4-38 68-103 (183)
12 cd04185 GT_2_like_b Subfamily 53.1 25 0.00054 26.2 4.1 106 3-142 67-175 (202)
13 cd02525 Succinoglycan_BP_ExoA 52.7 21 0.00046 27.1 3.7 32 3-38 72-103 (249)
14 cd02522 GT_2_like_a GT_2_like_ 51.7 19 0.00041 27.1 3.2 31 3-37 63-93 (221)
15 PRK10187 trehalose-6-phosphate 48.3 22 0.00047 29.4 3.4 33 6-40 177-212 (266)
16 cd02526 GT2_RfbF_like RfbF is 45.5 34 0.00073 26.1 3.8 35 3-38 63-97 (237)
17 cd06436 GlcNAc-1-P_transferase 42.0 44 0.00096 25.3 4.0 37 3-39 69-112 (191)
18 TIGR01556 rhamnosyltran L-rham 39.2 46 0.001 26.7 3.9 35 3-38 61-95 (281)
19 KOG1490 GTP-binding protein CR 38.0 24 0.00052 33.6 2.3 30 6-39 242-277 (620)
20 cd06442 DPM1_like DPM1_like re 36.9 38 0.00082 25.4 2.9 32 4-39 70-101 (224)
21 TIGR01485 SPP_plant-cyano sucr 35.1 59 0.0013 26.0 3.9 53 20-73 3-76 (249)
22 PF00583 Acetyltransf_1: Acety 34.9 52 0.0011 20.8 2.9 33 5-37 48-80 (83)
23 cd04184 GT2_RfbC_Mx_like Myxoc 34.4 52 0.0011 24.3 3.2 32 3-38 74-105 (202)
24 cd06439 CESA_like_1 CESA_like_ 31.6 55 0.0012 25.3 3.1 32 3-38 100-131 (251)
25 cd06433 GT_2_WfgS_like WfgS an 30.8 52 0.0011 23.7 2.7 32 2-37 65-96 (202)
26 PF13641 Glyco_tranf_2_3: Glyc 30.6 52 0.0011 24.9 2.8 121 3-141 77-211 (228)
27 cd04192 GT_2_like_e Subfamily 28.8 94 0.002 23.1 3.9 25 15-39 81-105 (229)
28 cd06434 GT2_HAS Hyaluronan syn 28.7 80 0.0017 23.9 3.5 44 4-53 69-112 (235)
29 cd04187 DPM1_like_bac Bacteria 28.3 65 0.0014 23.6 2.9 32 4-39 72-103 (181)
30 PF14620 YPEB: YpeB sporulatio 26.0 88 0.0019 27.7 3.7 73 3-87 286-361 (361)
31 TIGR03693 ocin_ThiF_like putat 25.7 34 0.00073 33.0 1.1 56 15-77 204-262 (637)
32 cd01462 VWA_YIEM_type VWA YIEM 23.9 1.4E+02 0.0031 21.6 4.0 37 16-52 95-134 (152)
33 cd04195 GT2_AmsE_like GT2_AmsE 23.6 1.1E+02 0.0023 22.6 3.3 31 3-37 71-101 (201)
34 cd06421 CESA_CelA_like CESA_Ce 22.5 96 0.0021 23.3 2.9 33 3-39 75-107 (234)
35 PLN02580 trehalose-phosphatase 22.0 92 0.002 28.0 3.1 32 6-39 304-341 (384)
36 PHA01735 hypothetical protein 21.9 66 0.0014 22.9 1.7 18 4-21 35-52 (76)
37 PF03088 Str_synth: Strictosid 21.8 55 0.0012 23.5 1.4 19 17-35 9-27 (89)
38 PF03478 DUF295: Protein of un 21.8 30 0.00065 21.9 -0.0 7 19-25 34-40 (54)
39 cd04188 DPG_synthase DPG_synth 21.8 1.2E+02 0.0026 22.9 3.3 33 4-40 74-106 (211)
40 cd06427 CESA_like_2 CESA_like_ 21.2 1.4E+02 0.0031 23.2 3.7 31 3-37 75-105 (241)
41 KOG3715 LST7 amino acid permea 21.1 74 0.0016 28.5 2.2 33 4-36 122-161 (344)
42 cd04179 DPM_DPG-synthase_like 21.0 1.2E+02 0.0027 21.8 3.1 32 4-39 71-102 (185)
43 PF05404 TRAP-delta: Transloco 20.6 29 0.00064 28.0 -0.3 40 26-66 93-142 (167)
44 COG3940 Predicted beta-xylosid 20.6 1.7E+02 0.0036 25.5 4.2 73 60-143 194-280 (324)
No 1
>PLN02458 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.4e-60 Score=407.55 Aligned_cols=140 Identities=73% Similarity=1.192 Sum_probs=133.3
Q ss_pred ChhhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCCeeEEEEeccCCC
Q 042066 1 DHQRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNN 80 (147)
Q Consensus 1 ~~qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~~~~~~ 80 (147)
++|||+||+|||+|+++||||||||||+||++||||||+||+||+||||++|++++++.+|||+|++|||+|||+.|.++
T Consensus 187 ~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ik~vG~WPVGlvg~~~~~~~vEGPvc~~gkVvGWht~w~~~ 266 (346)
T PLN02458 187 DHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRDIEVFGTWPMALLSANRNKVIIEGPVCDSSQVIGWHLKKMNN 266 (346)
T ss_pred HHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhcCceeeecceEEeecccccceeECceecCCeEeEEecccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred CCCCCCCcccceeeeecccccCCCCCCCCCCCCCcccchHHHHHhhhcc----------ccccccccccc
Q 042066 81 ETDAKPPIHVSSFAFNSSILWDPERWGRPSSVQQTSQVKTPYLLRMFGY----------ECFSNTLGNHQ 140 (147)
Q Consensus 81 ~~~R~fpiDmAGFA~ns~lL~~p~~f~rp~~~p~~~~ds~~Fl~~lv~~----------~~~~~~~~~~~ 140 (147)
.++|+||||||||||||+|||||++|+||++.|+++|||++||+||+.. ++|+.+|+||-
T Consensus 267 ~~~RrfpIDMAGFAfNs~lLwdP~rw~Rp~~~~~~~qeS~~Fv~ql~~~de~q~egipa~~CskVmvWhl 336 (346)
T PLN02458 267 ETETRPPIHISSFAFNSSILWDPERWGRPSSVQGTSQNSIKFVKQVALEDETKLKGIPPEDCSKIMLWRL 336 (346)
T ss_pred CCCCCCCcceeeeeeehhhhcChhhhCCCCCCCccchHHHHHHHHHhhccccccccCCcCCCCEEEEEEe
Confidence 7999999999999999999999999999999999999999999999432 57999999995
No 2
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=100.00 E-value=5.9e-58 Score=376.38 Aligned_cols=132 Identities=40% Similarity=0.729 Sum_probs=122.4
Q ss_pred ChhhhhHHHHHHhc---CCccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCCeeEEEEecc
Q 042066 1 DHQRNVALKHIEHH---RLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKK 77 (147)
Q Consensus 1 ~~qRN~AL~~Ir~~---~~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~~~ 77 (147)
++|||+||+|||+| +++||||||||||+||++||||||+||+||+||||++| ++.+|||+|++|||+|||+.
T Consensus 77 ~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~i~~vg~WPVglvg----~~~vegP~c~~gkV~gw~~~- 151 (223)
T cd00218 77 VEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRKIKRVGVWPVGLVG----GLRVEGPVCENGKVVGWHTA- 151 (223)
T ss_pred HHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhccCeeeEEEeeeec----CceeeccEeeCCeEeEEecC-
Confidence 37999999999999 99999999999999999999999999999999999999 59999999999999999998
Q ss_pred CCCCCCCCCCcccceeeeecccccCCCCCCCCCCCCCcccchHHHHHhhhc--------cccccccccccc
Q 042066 78 LNNETDAKPPIHVSSFAFNSSILWDPERWGRPSSVQQTSQVKTPYLLRMFG--------YECFSNTLGNHQ 140 (147)
Q Consensus 78 ~~~~~~R~fpiDmAGFA~ns~lL~~p~~f~rp~~~p~~~~ds~~Fl~~lv~--------~~~~~~~~~~~~ 140 (147)
|.+.||||||||||||||++||+|.+|.+|.+.+.++|+| +||++|+. .+||+++|+||-
T Consensus 152 --w~~~R~f~idmAGFA~n~~ll~~~~~~~~~~~~~~g~~es-~fl~~L~~~~~~~Epl~~~c~~VlvWht 219 (223)
T cd00218 152 --WKPERPFPIDMAGFAFNSKLLWDPPRAVFPYSAKRGYQES-SFLEQLVLDRKELEPLANNCSKVLVWHT 219 (223)
T ss_pred --CCCCCCCcceeeeEEEehhhhccCccccCCCCCCCcchhH-HhHHHHcccHHhcccccCCCCEEEEEee
Confidence 5899999999999999999999988888776656666656 89999987 568999999995
No 3
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=100.00 E-value=5.7e-55 Score=354.95 Aligned_cols=130 Identities=42% Similarity=0.758 Sum_probs=98.3
Q ss_pred hhhhhHHHHHH---hcCCccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCCeeEEEEeccC
Q 042066 2 HQRNVALKHIE---HHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKL 78 (147)
Q Consensus 2 ~qRN~AL~~Ir---~~~~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~~~~ 78 (147)
+|||+||+||| .++++|||||||||||||+|||||||+||+||+||||++| ++.+|||+|++++|+|||+.
T Consensus 60 ~qRn~AL~~ir~~~~~~~~GVVyFaDDdNtYdl~LF~emR~~k~vgvWPVG~vg----~~~~EgP~~~~~~Vvgw~~~-- 133 (207)
T PF03360_consen 60 HQRNAALRWIRNNANHRLDGVVYFADDDNTYDLRLFDEMRKTKRVGVWPVGLVG----GLRVEGPVCNNGKVVGWHTS-- 133 (207)
T ss_dssp HHHHHHHHHHHSTTTSSS-EEEEE--TTSEE-HHHHHHHCT-SSEEE--EEEET----TEEEEEEEEETTEEEEEE-S--
T ss_pred HHHHHHHHHHHhcccCCCCcEEEECCCCCeeeHHHHHHHHhhhcccceeeceec----cceeeccEEeCCEEEEEEcc--
Confidence 69999999999 8899999999999999999999999999999999999999 69999999999999999998
Q ss_pred CCCCCCCCCcccceeeeecccccC-CC-CCCCCCCCCC-cccchHHHHHhhh-cc-------ccccccccccc
Q 042066 79 NNETDAKPPIHVSSFAFNSSILWD-PE-RWGRPSSVQQ-TSQVKTPYLLRMF-GY-------ECFSNTLGNHQ 140 (147)
Q Consensus 79 ~~~~~R~fpiDmAGFA~ns~lL~~-p~-~f~rp~~~p~-~~~ds~~Fl~~lv-~~-------~~~~~~~~~~~ 140 (147)
|.++||||||||||||||+|||+ |+ .|. +...++ +++|| +||++|+ +. +||+++|+||-
T Consensus 134 -~~~~R~fpiDmAGFAvn~~ll~~~~~~~~~-~~~~~~~G~~Es-~fL~~l~~~~~~lEp~a~~c~~VlVWHt 203 (207)
T PF03360_consen 134 -WKPDRPFPIDMAGFAVNSRLLWDRPEAIFD-YSAPRGEGYQES-SFLSQLVLDREDLEPLADNCSKVLVWHT 203 (207)
T ss_dssp -SSTTSTT---GGGEEEEHHHHHHSTT-----TTSSTT-TGHHH-HHHHTT---GGGEEE-HHHHTS--EE--
T ss_pred -cCCCCCccccceeeeeehHHHhcCcccccc-ccCCCCCCcchh-HHHHHhccChhhcccccCCCCEEEEeee
Confidence 58999999999999999999997 55 554 333331 55556 8999999 32 47789999995
No 4
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-50 Score=346.00 Aligned_cols=132 Identities=33% Similarity=0.559 Sum_probs=116.0
Q ss_pred ChhhhhHHHHHH-----hcCCccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCCeeEEEEe
Q 042066 1 DHQRNVALKHIE-----HHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHL 75 (147)
Q Consensus 1 ~~qRN~AL~~Ir-----~~~~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~ 75 (147)
.+|||+||+||| +|+++||||||||||+||++||+|||+|+++|+||||++| |+.||||+|++|||+|||+
T Consensus 161 ~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~eiR~v~~~gvWpVg~vg----g~~vE~P~v~~~kvvg~~~ 236 (330)
T KOG1476|consen 161 WEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEEIRNVKKFGVWPVGLVG----GARVEGPVVNNGKVVGWHT 236 (330)
T ss_pred hhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHHHhccceeeeEeeeecC----CeeeecceeccCeeEEEEe
Confidence 489999999999 7799999999999999999999999999999999999999 6999999999999999999
Q ss_pred ccCCCCCCCCCCcccceeeeecccccC-CC-CCCCCCCCCCcccchHHHHHhhhc--------cccccccccccc
Q 042066 76 KKLNNETDAKPPIHVSSFAFNSSILWD-PE-RWGRPSSVQQTSQVKTPYLLRMFG--------YECFSNTLGNHQ 140 (147)
Q Consensus 76 ~~~~~~~~R~fpiDmAGFA~ns~lL~~-p~-~f~rp~~~p~~~~ds~~Fl~~lv~--------~~~~~~~~~~~~ 140 (147)
. |++.||||||||||||||++||+ |. .|+.-...+.+.+|+ +||++|+. ..||..+|+||.
T Consensus 237 ~---w~~~r~f~vdmaGFAvNl~lll~~~~a~f~~~~~~~~G~~E~-~~l~~l~~d~~~iEp~~~~c~kILvWht 307 (330)
T KOG1476|consen 237 R---WEPERPFAVDMAGFAVNLKLLLDPSNAVFKPLCPRGEGYQET-CLLEQLGLDLSDIEPLAYECTKILVWHT 307 (330)
T ss_pred c---cccCCCCccchhhheehhhhhccCccccccccCcCCCCCcch-hHHHHhcCCHHHccccccccceEEEEEe
Confidence 9 69999999999999999999999 44 555333344355545 89999942 237888999995
No 5
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=72.80 E-value=3.5 Score=27.95 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=22.4
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCc--ccH----HhhHhhhcc
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNV--YDL----AFFDELRDI 40 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNt--Ydl----~lFdemR~~ 40 (147)
|=-.||+||+ ..|+||.|-+++ |++ .||++||..
T Consensus 5 qai~AL~hL~----~~ilfi~D~Se~CGysie~Q~~L~~~ik~~ 44 (58)
T PF06858_consen 5 QAITALAHLA----DAILFIIDPSEQCGYSIEEQLSLFKEIKPL 44 (58)
T ss_dssp HHHHGGGGT-----SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc----ceEEEEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3446888763 579999999987 764 688888753
No 6
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=71.21 E-value=4 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=22.7
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdem 37 (147)
+||.|+++.+.. .|.|.|+|..+....++++
T Consensus 69 ~~n~~~~~a~~~----~i~~ld~D~~~~~~~l~~l 99 (169)
T PF00535_consen 69 ARNRGIKHAKGE----YILFLDDDDIISPDWLEEL 99 (169)
T ss_dssp HHHHHHHH--SS----EEEEEETTEEE-TTHHHHH
T ss_pred ccccccccccee----EEEEeCCCceEcHHHHHHH
Confidence 577888876553 9999999999999877763
No 7
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=70.82 E-value=6.4 Score=27.12 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhh
Q 042066 2 HQRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 2 ~qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdem 37 (147)
.+||.|++.. ..-.|.|.|+|..+....+++|
T Consensus 68 ~~~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 68 GALNAGLRHA----KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred HHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 3578888775 3457899999999999999998
No 8
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.66 E-value=7.6 Score=27.33 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=26.7
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhc
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRD 39 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~ 39 (147)
.||.|++.. ..-.|.|.|+|..++...+++|-+
T Consensus 65 a~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 65 GNNQGIREA----KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred HhhHHHhhC----CCCEEEEECCCcEECccHHHHHHH
Confidence 467777776 356899999999999999988654
No 9
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=63.83 E-value=11 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=24.3
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdem 37 (147)
.+|.|+++. ....|.+.|+|..++...++.+
T Consensus 68 ~~~~~~~~~----~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 68 ARNAGLKAA----RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHHHHHh----cCCEEEEECCCCccCccHHHHH
Confidence 356666655 4678999999999999998875
No 10
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=59.82 E-value=8.8 Score=30.12 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhcc
Q 042066 2 HQRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRDI 40 (147)
Q Consensus 2 ~qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~~ 40 (147)
.+||.|++..+. + .|.|.|.|..++..+.++|.+.
T Consensus 61 ~~~n~~~~~a~~---d-~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 61 AQRNFALELATN---D-WVLSLDADERLTPELADEILAL 95 (229)
T ss_pred HHHHHHHHhCCC---C-EEEEEeCCcCcCHHHHHHHHHH
Confidence 478888886432 2 8999999999999999987654
No 11
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=54.99 E-value=23 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred hhhHHHHHHhcCC-ccEEEEecCCCcccHHhhHhhh
Q 042066 4 RNVALKHIEHHRL-SGIVHFAGVSNVYDLAFFDELR 38 (147)
Q Consensus 4 RN~AL~~Ir~~~~-~GVVyFaDDDNtYdl~lFdemR 38 (147)
+|.|+++.+.... .-+|.|.|.|..++...+.+|.
T Consensus 68 ln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 68 LDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHH
Confidence 5666666653222 3489999999999999998864
No 12
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.09 E-value=25 Score=26.25 Aligned_cols=106 Identities=8% Similarity=-0.014 Sum_probs=58.5
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCCeeEEEEeccCCCCC
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLNNET 82 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~~~~~~~~ 82 (147)
.+|.|+++.. ....-.|.|.|+|..++...++++.+.-. -=.++++++ .. +.. ..
T Consensus 67 ~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~--~~~~~~~~~----~~-----~~~-------------~~ 121 (202)
T cd04185 67 GFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYAD--KDNPQFLAP----LV-----LDP-------------DG 121 (202)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHh--cCCceEecc----ee-----EcC-------------CC
Confidence 4677888776 22233788889999999999998664421 111233331 00 100 00
Q ss_pred CCCCCcccceeeeecccccCCCCCCCCCCCCCcccchHHHHHhhhccc---cccccccccccc
Q 042066 83 DAKPPIHVSSFAFNSSILWDPERWGRPSSVQQTSQVKTPYLLRMFGYE---CFSNTLGNHQTN 142 (147)
Q Consensus 83 ~R~fpiDmAGFA~ns~lL~~p~~f~rp~~~p~~~~ds~~Fl~~lv~~~---~~~~~~~~~~~~ 142 (147)
-..|+.+..+++.....|. + ....+.+|. .|..++.... ++.+....|+.+
T Consensus 122 ------~~~~~~~~~~~~~~~g~~~-~-~~~~~~eD~-~~~~r~~~~G~~i~~~~~~~~h~~~ 175 (202)
T cd04185 122 ------SFVGVLISRRVVEKIGLPD-K-EFFIWGDDT-EYTLRASKAGPGIYVPDAVVVHKTA 175 (202)
T ss_pred ------ceEEEEEeHHHHHHhCCCC-h-hhhccchHH-HHHHHHHHcCCcEEecceEEEEccc
Confidence 3456777777776543333 1 122344555 7777665433 455556666544
No 13
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=52.72 E-value=21 Score=27.07 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=25.4
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELR 38 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR 38 (147)
.+|.|++.. ..-.|.|.|+|..++...+++|-
T Consensus 72 a~N~g~~~a----~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 72 GLNIGIRNS----RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred HHHHHHHHh----CCCEEEEECCCccCCHHHHHHHH
Confidence 467787765 24588999999999999888865
No 14
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=51.67 E-value=19 Score=27.07 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=25.8
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdem 37 (147)
.||.|++..+ .-+|.|.|+|..++...+++|
T Consensus 63 a~n~g~~~a~----~~~i~~~D~D~~~~~~~l~~l 93 (221)
T cd02522 63 QMNAGAAAAR----GDWLLFLHADTRLPPDWDAAI 93 (221)
T ss_pred HHHHHHHhcc----CCEEEEEcCCCCCChhHHHHH
Confidence 5788887653 468999999999999999996
No 15
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=48.34 E-value=22 Score=29.42 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=24.5
Q ss_pred hHHHHHHhc---CCccEEEEecCCCcccHHhhHhhhcc
Q 042066 6 VALKHIEHH---RLSGIVHFAGVSNVYDLAFFDELRDI 40 (147)
Q Consensus 6 ~AL~~Ir~~---~~~GVVyFaDDDNtYdl~lFdemR~~ 40 (147)
.||+.|-++ ..+.++||+||-| |...|..++..
T Consensus 177 ~al~~ll~~~~~~~~~v~~~GD~~n--D~~mf~~~~~~ 212 (266)
T PRK10187 177 EAIAAFMQEAPFAGRTPVFVGDDLT--DEAGFAVVNRL 212 (266)
T ss_pred HHHHHHHHhcCCCCCeEEEEcCCcc--HHHHHHHHHhc
Confidence 467777665 3467999999777 88899888653
No 16
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=45.50 E-value=34 Score=26.06 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=28.1
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELR 38 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR 38 (147)
.||.|++..+.+ ..=.|.|.|+|...+...+++|.
T Consensus 63 a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 63 ALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 578888876653 23489999999999999999983
No 17
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=41.95 E-value=44 Score=25.27 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=27.9
Q ss_pred hhhhHHHHHHhcC-C-----cc-EEEEecCCCcccHHhhHhhhc
Q 042066 3 QRNVALKHIEHHR-L-----SG-IVHFAGVSNVYDLAFFDELRD 39 (147)
Q Consensus 3 qRN~AL~~Ir~~~-~-----~G-VVyFaDDDNtYdl~lFdemR~ 39 (147)
.+|.|++.++... . ++ +|.|.|.|..++...++.+..
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~ 112 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAP 112 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHH
Confidence 5788888876431 1 22 889999999999999998654
No 18
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=39.25 E-value=46 Score=26.68 Aligned_cols=35 Identities=14% Similarity=-0.016 Sum_probs=26.3
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELR 38 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR 38 (147)
-+|.|+++..+++ --.|.|.|+|.+.+...+++|-
T Consensus 61 a~N~Gi~~a~~~~-~d~i~~lD~D~~~~~~~l~~l~ 95 (281)
T TIGR01556 61 AQNQGLDASFRRG-VQGVLLLDQDSRPGNAFLAAQW 95 (281)
T ss_pred HHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHH
Confidence 3788888876543 2467799999999988877644
No 19
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=37.95 E-value=24 Score=33.64 Aligned_cols=30 Identities=23% Similarity=0.619 Sum_probs=24.5
Q ss_pred hHHHHHHhcCCccEEEEecCCCc--ccH----HhhHhhhc
Q 042066 6 VALKHIEHHRLSGIVHFAGVSNV--YDL----AFFDELRD 39 (147)
Q Consensus 6 ~AL~~Ir~~~~~GVVyFaDDDNt--Ydl----~lFdemR~ 39 (147)
.||+||| ..|+||.|-+.. |++ .||+.|+-
T Consensus 242 TALAHLr----aaVLYfmDLSe~CGySva~QvkLfhsIKp 277 (620)
T KOG1490|consen 242 TALAHLR----SAVLYFMDLSEMCGYSVAAQVKLYHSIKP 277 (620)
T ss_pred HHHHHhh----hhheeeeechhhhCCCHHHHHHHHHHhHH
Confidence 7999997 489999999887 664 68888864
No 20
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=36.91 E-value=38 Score=25.45 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=24.0
Q ss_pred hhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhc
Q 042066 4 RNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRD 39 (147)
Q Consensus 4 RN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~ 39 (147)
||.|++..+ .-+|.|.|+|..++...++.|-+
T Consensus 70 ~n~g~~~a~----gd~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 70 YIEGFKAAR----GDVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred HHHHHHHcC----CCEEEEEECCCCCCHHHHHHHHH
Confidence 566666543 24789999999999998887544
No 21
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=35.14 E-value=59 Score=26.02 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=35.1
Q ss_pred EEEecCCCccc----------HHhhHhhhcceeecccceeeeecCc--------ceeEEecc---eecCCeeEEE
Q 042066 20 VHFAGVSNVYD----------LAFFDELRDIEVYGAWPVALLSANK--------QKVIIEGP---VCDSSQVIGW 73 (147)
Q Consensus 20 VyFaDDDNtYd----------l~lFdemR~~~~vgvWPVG~vg~~~--------~~~~vEgP---vc~~g~V~gW 73 (147)
+.+.|-|+|+- .++.+-|++.+.=|+ ++.++++.. ..+....| +|++|.++=+
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi-~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~ 76 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDS-LLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYY 76 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCc-eEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEe
Confidence 55667777655 677777888777777 888777653 12344567 5777876633
No 22
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=34.92 E-value=52 Score=20.76 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=26.8
Q ss_pred hhHHHHHHhcCCccEEEEecCCCcccHHhhHhh
Q 042066 5 NVALKHIEHHRLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 5 N~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdem 37 (147)
+.++.+.+++....+......+|....++|+.+
T Consensus 48 ~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 48 QAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp HHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred hhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 345666777778889999999999999999875
No 23
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=34.40 E-value=52 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=24.5
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELR 38 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR 38 (147)
.||.|++..+ .=.|.|.|+|..++...++++.
T Consensus 74 a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 74 ATNSALELAT----GEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred HHHHHHHhhc----CCEEEEECCCCcCChHHHHHHH
Confidence 4677777542 3488899999999999888754
No 24
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=31.62 E-value=55 Score=25.25 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=24.6
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELR 38 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR 38 (147)
.||.|++... .-+|.|.|+|..++...+++|-
T Consensus 100 a~n~gi~~a~----~d~i~~lD~D~~~~~~~l~~l~ 131 (251)
T cd06439 100 ALNRALALAT----GEIVVFTDANALLDPDALRLLV 131 (251)
T ss_pred HHHHHHHHcC----CCEEEEEccccCcCHHHHHHHH
Confidence 4677776542 3689999999999999888754
No 25
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.82 E-value=52 Score=23.69 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhh
Q 042066 2 HQRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 2 ~qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdem 37 (147)
..||.||+..+ .-.|.|.|+|..+...-..++
T Consensus 65 ~a~n~~~~~a~----~~~v~~ld~D~~~~~~~~~~~ 96 (202)
T cd06433 65 DAMNKGIALAT----GDIIGFLNSDDTLLPGALLAV 96 (202)
T ss_pred HHHHHHHHHcC----CCEEEEeCCCcccCchHHHHH
Confidence 35788887643 348889999998887766653
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=30.63 E-value=52 Score=24.91 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=53.0
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCCeeEEEEeccC----
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKL---- 78 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~~~~---- 78 (147)
++|.|++.++ .-+|.|.|+|...+...++++-..= ..=-+|.+++ ....+ ++.....+.....
T Consensus 77 a~n~~~~~~~----~d~i~~lD~D~~~~p~~l~~~~~~~--~~~~~~~v~~---~~~~~----~~~~~~~~~~~~~~~~~ 143 (228)
T PF13641_consen 77 ALNEALAAAR----GDYILFLDDDTVLDPDWLERLLAAF--ADPGVGAVGG---PVFPD----NDRNWLTRLQDLFFARW 143 (228)
T ss_dssp HHHHHHHH-------SEEEEE-SSEEE-CHHHHHHHHHH--HBSS--EEEE---EEEET----TCCCEEEE-TT--S-EE
T ss_pred HHHHHHHhcC----CCEEEEECCCcEECHHHHHHHHHHH--HhCCCCeEee---eEeec----CCCCHHHHHHHHHHhhh
Confidence 3566666654 4499999999999999988854331 1113444442 11111 1122222222110
Q ss_pred ---CCCCCCCCCccc---ceeeeecccccCCCCCCCCCCCCCcccchHHHHHhhhccc----ccccccccccc
Q 042066 79 ---NNETDAKPPIHV---SSFAFNSSILWDPERWGRPSSVQQTSQVKTPYLLRMFGYE----CFSNTLGNHQT 141 (147)
Q Consensus 79 ---~~~~~R~fpiDm---AGFA~ns~lL~~p~~f~rp~~~p~~~~ds~~Fl~~lv~~~----~~~~~~~~~~~ 141 (147)
.....+...... ++++|..+++-+--.|+ + ....+|. .|..++.... ...+.+++|..
T Consensus 144 ~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd-~---~~~~eD~-~l~~r~~~~G~~~~~~~~~~v~~~~ 211 (228)
T PF13641_consen 144 HLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFD-P---FILGEDF-DLCLRLRAAGWRIVYAPDALVYHEE 211 (228)
T ss_dssp TTTS-TT-B----S-B--TEEEEEHHHHHHH-S---S---SSSSHHH-HHHHHHHHTT--EEEEEEEEEEE--
T ss_pred hhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCC-C---CCcccHH-HHHHHHHHCCCcEEEECCcEEEEeC
Confidence 001122233332 67888888876544666 3 2233665 6666665433 34456666663
No 27
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.80 E-value=94 Score=23.14 Aligned_cols=25 Identities=4% Similarity=-0.067 Sum_probs=21.0
Q ss_pred CCccEEEEecCCCcccHHhhHhhhc
Q 042066 15 RLSGIVHFAGVSNVYDLAFFDELRD 39 (147)
Q Consensus 15 ~~~GVVyFaDDDNtYdl~lFdemR~ 39 (147)
...-+|.|.|+|..++....++|-.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHH
Confidence 3456999999999999999998654
No 28
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=28.70 E-value=80 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=29.7
Q ss_pred hhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhcceeecccceeeeec
Q 042066 4 RNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSA 53 (147)
Q Consensus 4 RN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~ 53 (147)
+|.||+.. ..-+|.|.|+|..++....++|.+.=. -=.||.+++
T Consensus 69 ~n~g~~~a----~~d~v~~lD~D~~~~~~~l~~l~~~~~--~~~v~~v~~ 112 (235)
T cd06434 69 LAEGIRHV----TTDIVVLLDSDTVWPPNALPEMLKPFE--DPKVGGVGT 112 (235)
T ss_pred HHHHHHHh----CCCEEEEECCCceeChhHHHHHHHhcc--CCCEeEEcC
Confidence 56666653 345899999999999999888654322 224555553
No 29
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=28.31 E-value=65 Score=23.57 Aligned_cols=32 Identities=13% Similarity=-0.023 Sum_probs=23.1
Q ss_pred hhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhc
Q 042066 4 RNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRD 39 (147)
Q Consensus 4 RN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~ 39 (147)
+|.|+++. ..-.|.|.|+|..++....++|-+
T Consensus 72 ~n~g~~~a----~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 72 LLAGLDHA----RGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred HHHHHHhc----CCCEEEEEeCCCCCCHHHHHHHHH
Confidence 34455443 335789999999999998888654
No 30
>PF14620 YPEB: YpeB sporulation
Probab=26.00 E-value=88 Score=27.67 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=42.2
Q ss_pred hhhhHHHHHHhcCCc--cEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCCeeEEEEeccCC-
Q 042066 3 QRNVALKHIEHHRLS--GIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKKLN- 79 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~--GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~~~~~- 79 (147)
-++.|.+||+++... -.+|..+-||++...+ .++...|-+-|=.+-. . =..++|+|+|+.+...-
T Consensus 286 A~~~A~~fL~~~g~~~m~~t~~~~~~n~~~f~f---v~~q~gV~iYpD~IkV------k---VALDnGeIiG~~a~~Yl~ 353 (361)
T PF14620_consen 286 AKNKAEEFLKKHGYKNMVPTYSEQYDNIAVFNF---VYKQNGVRIYPDKIKV------K---VALDNGEIIGFDARGYLM 353 (361)
T ss_pred HHHHHHHHHHHhCCCccEEeeeeccCcEEEEEE---EEeeCCEEECCCcEEE------E---EECCCCeEEEEecHHHHH
Confidence 368899999999654 4578888887766433 3333322222222111 0 11368999999886421
Q ss_pred CCCCCCCC
Q 042066 80 NETDAKPP 87 (147)
Q Consensus 80 ~~~~R~fp 87 (147)
...+|..|
T Consensus 354 ~H~~R~iP 361 (361)
T PF14620_consen 354 NHHERNIP 361 (361)
T ss_pred hcCCCCCC
Confidence 34445554
No 31
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=25.72 E-value=34 Score=32.99 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=43.2
Q ss_pred CCccEEEEecCCCcccHHhhHhhhccee---ecccceeeeecCcceeEEecceecCCeeEEEEecc
Q 042066 15 RLSGIVHFAGVSNVYDLAFFDELRDIEV---YGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLKK 77 (147)
Q Consensus 15 ~~~GVVyFaDDDNtYdl~lFdemR~~~~---vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~~~ 77 (147)
.-+-|||-+||-+..+++-+++...-+. +-++|.|.. .+-||++..++=-.|...|
T Consensus 204 ~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~-------~liGPlftPgkTGCWeCa~ 262 (637)
T TIGR03693 204 PADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQV-------GLAGPVFQQHGDECFEAAW 262 (637)
T ss_pred CCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccc-------eeecceECCCCCcHHHHHH
Confidence 4578999999999999999999766666 455555554 4999999977666777754
No 32
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=23.88 E-value=1.4e+02 Score=21.58 Aligned_cols=37 Identities=19% Similarity=0.050 Sum_probs=25.7
Q ss_pred CccEEEEecC-CCcccHHhh--Hhhhcceeecccceeeee
Q 042066 16 LSGIVHFAGV-SNVYDLAFF--DELRDIEVYGAWPVALLS 52 (147)
Q Consensus 16 ~~GVVyFaDD-DNtYdl~lF--demR~~~~vgvWPVG~vg 52 (147)
..-||++-|- ++.+..+++ .++.+-+++.+|.+|+=.
T Consensus 95 ~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 134 (152)
T cd01462 95 KADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGD 134 (152)
T ss_pred CceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecC
Confidence 3457788887 678888886 445555567888888655
No 33
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=23.56 E-value=1.1e+02 Score=22.61 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=22.9
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdem 37 (147)
.||.|++.. ..-.|.|.|+|..+....+++|
T Consensus 71 a~N~g~~~a----~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 71 ALNEGLKHC----TYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred HHHHHHHhc----CCCEEEEeCCccccCcHHHHHH
Confidence 466666642 2348999999999998888874
No 34
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=22.45 E-value=96 Score=23.31 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=24.7
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhc
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRD 39 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~ 39 (147)
++|.|++.. ..=.|.|.|+|...+...+++|-+
T Consensus 75 ~~n~~~~~a----~~d~i~~lD~D~~~~~~~l~~l~~ 107 (234)
T cd06421 75 NLNNALAHT----TGDFVAILDADHVPTPDFLRRTLG 107 (234)
T ss_pred HHHHHHHhC----CCCEEEEEccccCcCccHHHHHHH
Confidence 467777754 234899999999999888887543
No 35
>PLN02580 trehalose-phosphatase
Probab=21.97 E-value=92 Score=28.00 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=23.1
Q ss_pred hHHHHHHhc-CC---ccE--EEEecCCCcccHHhhHhhhc
Q 042066 6 VALKHIEHH-RL---SGI--VHFAGVSNVYDLAFFDELRD 39 (147)
Q Consensus 6 ~AL~~Ir~~-~~---~GV--VyFaDDDNtYdl~lFdemR~ 39 (147)
.|+++|-++ .. +++ |||+||.| |...|..++.
T Consensus 304 ~Av~~Ll~~~g~~~~d~~~pi~iGDD~T--DedmF~~L~~ 341 (384)
T PLN02580 304 KAVEFLLESLGLSNCDDVLPIYIGDDRT--DEDAFKVLRE 341 (384)
T ss_pred HHHHHHHHhcCCCcccceeEEEECCCch--HHHHHHhhhc
Confidence 577777665 22 243 78888777 8999998875
No 36
>PHA01735 hypothetical protein
Probab=21.92 E-value=66 Score=22.92 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=15.8
Q ss_pred hhhHHHHHHhcCCccEEE
Q 042066 4 RNVALKHIEHHRLSGIVH 21 (147)
Q Consensus 4 RN~AL~~Ir~~~~~GVVy 21 (147)
-++|.+|+..|...||.+
T Consensus 35 L~AA~d~Lk~NdItgv~~ 52 (76)
T PHA01735 35 LRAACDWLKSNDITGVAV 52 (76)
T ss_pred HHHHHHHHHHCCCceeeC
Confidence 378999999999999986
No 37
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=21.84 E-value=55 Score=23.46 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=10.9
Q ss_pred ccEEEEecCCCcccHHhhH
Q 042066 17 SGIVHFAGVSNVYDLAFFD 35 (147)
Q Consensus 17 ~GVVyFaDDDNtYdl~lFd 35 (147)
.|.|||.|-+..|+.+=|-
T Consensus 9 ~g~vYfTdsS~~~~~~~~~ 27 (89)
T PF03088_consen 9 TGTVYFTDSSSRYDRRDWV 27 (89)
T ss_dssp T--EEEEES-SS--TTGHH
T ss_pred CCEEEEEeCccccCcccee
Confidence 4999999999998875443
No 38
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=21.83 E-value=30 Score=21.94 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=6.2
Q ss_pred EEEEecC
Q 042066 19 IVHFAGV 25 (147)
Q Consensus 19 VVyFaDD 25 (147)
-|||.|+
T Consensus 34 ~IYf~~~ 40 (54)
T PF03478_consen 34 CIYFLDD 40 (54)
T ss_pred EEEEecC
Confidence 5999998
No 39
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=21.81 E-value=1.2e+02 Score=22.87 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=24.1
Q ss_pred hhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhcc
Q 042066 4 RNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRDI 40 (147)
Q Consensus 4 RN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~~ 40 (147)
+|.|++.. ..=+|.|.|.|..++.+.+++|-+.
T Consensus 74 ~~~g~~~a----~gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 74 VRAGMLAA----RGDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred HHHHHHHh----cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 45555543 2357999999999999999886543
No 40
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=21.21 E-value=1.4e+02 Score=23.17 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=23.0
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdem 37 (147)
.+|.|+++. ..-+|.|.|+|..++...++++
T Consensus 75 a~n~g~~~a----~gd~i~~~DaD~~~~~~~l~~~ 105 (241)
T cd06427 75 ACNYALAFA----RGEYVVIYDAEDAPDPDQLKKA 105 (241)
T ss_pred HHHHHHHhc----CCCEEEEEcCCCCCChHHHHHH
Confidence 356666642 2347889999999999999873
No 41
>KOG3715 consensus LST7 amino acid permease Golgi transport protein [Intracellular trafficking, secretion, and vesicular transport; Amino acid transport and metabolism]
Probab=21.13 E-value=74 Score=28.45 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=22.2
Q ss_pred hhhHHHHHHhc---CCccEEEEecCCCcc----cHHhhHh
Q 042066 4 RNVALKHIEHH---RLSGIVHFAGVSNVY----DLAFFDE 36 (147)
Q Consensus 4 RN~AL~~Ir~~---~~~GVVyFaDDDNtY----dl~lFde 36 (147)
++++++-+-.. ..+|-|+|+|+||-| .-+|-|+
T Consensus 122 k~a~vRsLScE~~~~~~~pvfFGD~dnGfv~s~tF~l~D~ 161 (344)
T KOG3715|consen 122 KQACVRSLSCETMPSDNGPVFFGDDDNGFVLSHTFRLYDE 161 (344)
T ss_pred HHHHHHHhccccCCCCCCceEEeeCCCCeEEEEEEEeccc
Confidence 44555554443 568999999999974 4456665
No 42
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=20.96 E-value=1.2e+02 Score=21.77 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=22.8
Q ss_pred hhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhhc
Q 042066 4 RNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELRD 39 (147)
Q Consensus 4 RN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR~ 39 (147)
+|.|++..+ .=+|.|.|+|..++....+++-.
T Consensus 71 ~n~g~~~a~----gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 71 VRAGFKAAR----GDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred HHHHHHHhc----CCEEEEEeCCCCCCHHHHHHHHH
Confidence 455554432 24799999999999998887544
No 43
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.60 E-value=29 Score=28.01 Aligned_cols=40 Identities=30% Similarity=0.561 Sum_probs=27.8
Q ss_pred CCcccHHhhHh-----hhcceee-----cccceeeeecCcceeEEecceec
Q 042066 26 SNVYDLAFFDE-----LRDIEVY-----GAWPVALLSANKQKVIIEGPVCD 66 (147)
Q Consensus 26 DNtYdl~lFde-----mR~~~~v-----gvWPVG~vg~~~~~~~vEgPvc~ 66 (147)
.++|..+|||| +||-.|- ++=|+.++.-..+|+ +.||-++
T Consensus 93 sG~y~V~~fDEegyaalrKA~R~ged~~~vkplftV~v~h~Ga-~~gpwV~ 142 (167)
T PF05404_consen 93 SGTYEVKFFDEEGYAALRKAQRNGEDVSSVKPLFTVTVNHPGA-YKGPWVN 142 (167)
T ss_pred CCceEEEEeChHHHHHHHHHhhcCCCcccCCccEEEEEecCcc-ccCCCch
Confidence 56788999987 6665443 377888887666555 7777554
No 44
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=20.58 E-value=1.7e+02 Score=25.50 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=39.6
Q ss_pred Eeccee--cCCeeEEEEeccCCCCCCCCCCcccceeeeecccccCCCCCCC-CCC-----------CCCcccchHHHHHh
Q 042066 60 IEGPVC--DSSQVIGWHLKKLNNETDAKPPIHVSSFAFNSSILWDPERWGR-PSS-----------VQQTSQVKTPYLLR 125 (147)
Q Consensus 60 vEgPvc--~~g~V~gW~~~~~~~~~~R~fpiDmAGFA~ns~lL~~p~~f~r-p~~-----------~p~~~~ds~~Fl~~ 125 (147)
-|||.+ .+||+-==+++ ..++-.+-+.|-=--.|+.+ +||..|.. |+. -||-.. |.
T Consensus 194 negpav~k~ngkifi~ysa---satd~nycmgllwanen~dl-ldpaswtksptpvf~ts~en~qygpghns----ft-- 263 (324)
T COG3940 194 NEGPAVLKKNGKIFITYSA---SATDVNYCMGLLWANENSDL-LDPASWTKSPTPVFKTSMENHQYGPGHNS----FT-- 263 (324)
T ss_pred cCCceEEEECCEEEEEEec---cccccceeeeeeeecccCCc-CCchhcccCCCcceeeehhccccCCCCCc----eE--
Confidence 367775 36775433333 24555555554444455543 35666652 221 122222 32
Q ss_pred hhccccccccccccccce
Q 042066 126 MFGYECFSNTLGNHQTNK 143 (147)
Q Consensus 126 lv~~~~~~~~~~~~~~~~ 143 (147)
+++++-.|+|+-|..|-
T Consensus 264 -vtedgkhdvlvyharny 280 (324)
T COG3940 264 -VTEDGKHDVLVYHARNY 280 (324)
T ss_pred -ecCCCcccEEEEecccc
Confidence 67788899999998764
Done!