Query 042066
Match_columns 147
No_of_seqs 109 out of 241
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:38:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d0j_A Galactosylgalactosylxyl 100.0 1.5E-54 5.2E-59 359.1 10.0 130 2-140 81-224 (246)
2 3cu0_A Galactosylgalactosylxyl 100.0 1.4E-54 4.8E-59 364.9 8.9 129 2-140 105-255 (281)
3 1v84_A Galactosylgalactosylxyl 100.0 1.4E-54 4.9E-59 360.5 8.5 131 2-140 87-231 (253)
4 3nrf_A APAG protein; structura 46.2 5.5 0.00019 29.0 0.6 18 16-33 80-98 (106)
5 3by8_A Sensor protein DCUS; hi 44.8 52 0.0018 23.0 5.7 20 56-75 105-125 (142)
6 3bcv_A Putative glycosyltransf 39.3 27 0.00092 25.3 3.5 32 3-38 75-106 (240)
7 1p0z_A Sensor kinase CITA; tra 36.7 62 0.0021 22.2 4.9 20 56-75 100-120 (131)
8 1qg8_A Protein (spore coat pol 31.2 30 0.001 25.4 2.6 125 3-139 79-213 (255)
9 1l4d_B Streptokinase; plasmino 20.2 26 0.00088 25.9 0.4 16 16-31 87-102 (122)
10 3pgv_A Haloacid dehalogenase-l 20.2 79 0.0027 24.0 3.2 30 6-37 212-244 (285)
No 1
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=359.14 Aligned_cols=130 Identities=25% Similarity=0.474 Sum_probs=118.1
Q ss_pred hhhhhHHHHHHhcCC-----ccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCCeeEEEEec
Q 042066 2 HQRNVALKHIEHHRL-----SGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSSQVIGWHLK 76 (147)
Q Consensus 2 ~qRN~AL~~Ir~~~~-----~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~gW~~~ 76 (147)
+|||+||+|||+|++ +||||||||||+||++||||||+||+||+||||++| +..+|||+|++|||+|||+.
T Consensus 81 ~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR~i~~vgvWPVglvg----~~~~EgPv~~~gkVvGw~t~ 156 (246)
T 2d0j_A 81 EQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVG----GRRYERPLVENGKVVGWYTG 156 (246)
T ss_dssp HHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHTTCSSEEECCEEEET----TEEEEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHhhhceeeEEEEEeec----CcceecceeeCCEecceecc
Confidence 799999999999975 799999999999999999999999999999999999 59999999999999999998
Q ss_pred cCCCCCCCCCCcccceeeeeccccc-CCCC-CCCCCCCCCcccchHHHHHhhhcc-------ccccccccccc
Q 042066 77 KLNNETDAKPPIHVSSFAFNSSILW-DPER-WGRPSSVQQTSQVKTPYLLRMFGY-------ECFSNTLGNHQ 140 (147)
Q Consensus 77 ~~~~~~~R~fpiDmAGFA~ns~lL~-~p~~-f~rp~~~p~~~~ds~~Fl~~lv~~-------~~~~~~~~~~~ 140 (147)
|.++|+||||||||||||++|| +|++ |.++.+++|++| | +||++|++. +||+++|+||-
T Consensus 157 ---w~~~R~fpiDmAGFA~N~~lll~~p~a~~~~~~~~~g~~E-s-~fL~~l~~~~~lEp~~~~c~~VlvWht 224 (246)
T 2d0j_A 157 ---WRADRPFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQE-S-DFLKQITTVEELEPKANNCTKVLVWHT 224 (246)
T ss_dssp ---SCTTSTTCCCGGGEEEEHHHHHHCTTCCCCTTSSSGGGHH-H-HHHHTTCCGGGCEECHHHHTCCCEECC
T ss_pred ---cCCCCcCcccceeeEeehhhhhcCcccccccCCCCCCchh-h-HHHHHhccHhhceeccCCCCEEEEEec
Confidence 5899999999999999999665 7995 555677888876 5 799999864 37899999995
No 2
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=100.00 E-value=1.4e-54 Score=364.94 Aligned_cols=129 Identities=27% Similarity=0.466 Sum_probs=115.9
Q ss_pred hhhhhHHHHHH--------hc-C----CccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceecCC
Q 042066 2 HQRNVALKHIE--------HH-R----LSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCDSS 68 (147)
Q Consensus 2 ~qRN~AL~~Ir--------~~-~----~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g 68 (147)
+|||+||+||| +| + ++||||||||||+||++||||||+||+||+||||++| ++.||||+|++|
T Consensus 105 ~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdemR~ik~vgvWPVGlvg----g~~vEgPvc~~g 180 (281)
T 3cu0_A 105 EQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVG----GLRFEGPQVQDG 180 (281)
T ss_dssp HHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHHTSCSSEEECCEEEET----TEEEEEEEEETT
T ss_pred HHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHhhhcceEeEEEeeccc----cceeEEEEEeCC
Confidence 79999999999 66 3 6899999999999999999999999999999999999 699999999999
Q ss_pred eeEEEEeccCCCCCCCCCCcccceeeeecccccC-CC-CCCCCCCCCCcccchHHHHHhhhccc-------ccccccccc
Q 042066 69 QVIGWHLKKLNNETDAKPPIHVSSFAFNSSILWD-PE-RWGRPSSVQQTSQVKTPYLLRMFGYE-------CFSNTLGNH 139 (147)
Q Consensus 69 ~V~gW~~~~~~~~~~R~fpiDmAGFA~ns~lL~~-p~-~f~rp~~~p~~~~ds~~Fl~~lv~~~-------~~~~~~~~~ 139 (147)
||+|||+. |.++||||||||||||||++||+ |+ .|. .+.+++.||| +||++|++.+ ||.++|+||
T Consensus 181 kVvGw~t~---w~~~R~fpiDMAGFA~N~~lL~~~p~a~f~--~~~~~G~qEs-~fL~~lv~~~~lEp~~~~c~~VlVWH 254 (281)
T 3cu0_A 181 RVVGFHTA---WEPSRPFPVDMAGFAVALPLLLDKPNAQFD--STAPRGHLES-SLLSHLVDPKDLEPRAANCTRVLVWH 254 (281)
T ss_dssp EEEEEECC---SSTTCSSCCCGGGEEEEHHHHHHCTTCCCC--TTSCTTCHHH-HHHTTTCCGGGCEECHHHHTCCCEEC
T ss_pred EEeeeecc---CCCCCCCccccceeEeehhhhhcCCccccc--CCCCCcchhh-HHHHHhccHhhcEecCCCCCEEEEEe
Confidence 99999998 58999999999999999999995 98 554 4444555668 9999997653 688999999
Q ss_pred c
Q 042066 140 Q 140 (147)
Q Consensus 140 ~ 140 (147)
-
T Consensus 255 t 255 (281)
T 3cu0_A 255 T 255 (281)
T ss_dssp C
T ss_pred c
Confidence 5
No 3
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=100.00 E-value=1.4e-54 Score=360.51 Aligned_cols=131 Identities=24% Similarity=0.423 Sum_probs=115.2
Q ss_pred hhhhhHHHHHHhc-----CCccEEEEecCCCcccHHhhHhhhcceeecccceeeeecCcceeEEecceec-CCeeEEEEe
Q 042066 2 HQRNVALKHIEHH-----RLSGIVHFAGVSNVYDLAFFDELRDIEVYGAWPVALLSANKQKVIIEGPVCD-SSQVIGWHL 75 (147)
Q Consensus 2 ~qRN~AL~~Ir~~-----~~~GVVyFaDDDNtYdl~lFdemR~~~~vgvWPVG~vg~~~~~~~vEgPvc~-~g~V~gW~~ 75 (147)
+|||+||+|||++ +++||||||||||+||++||||||+|++||+||||++| ++.+|||+|+ +|||+|||+
T Consensus 87 ~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR~i~~vgvWPVglvg----~~~~EgPv~~~~gkVvGw~~ 162 (253)
T 1v84_A 87 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVG----GLRYEAPRVNGAGKVVRWKT 162 (253)
T ss_dssp HHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHHTCSSEEECCEESCT----TSSEEEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHhccCeeEEEEEEeec----CcceecCeECCCCCEeeeec
Confidence 7999999999984 78999999999999999999999999999999999999 5899999999 899999999
Q ss_pred ccCCCCCCCCCCcccceeeeeccccc-CCCCCCCCCCCCCcccchHHHHHhhhcc-------ccccccccccc
Q 042066 76 KKLNNETDAKPPIHVSSFAFNSSILW-DPERWGRPSSVQQTSQVKTPYLLRMFGY-------ECFSNTLGNHQ 140 (147)
Q Consensus 76 ~~~~~~~~R~fpiDmAGFA~ns~lL~-~p~~f~rp~~~p~~~~ds~~Fl~~lv~~-------~~~~~~~~~~~ 140 (147)
. |.++||||||||||||||++|| +|+++.++...+++.||| .||++|++. ++|.++|+||-
T Consensus 163 ~---w~~~R~fpiDmAGFA~N~~lll~~p~a~~~~~~~~~g~~Es-~fL~~l~~~~~lEp~~~~C~~VlvWHt 231 (253)
T 1v84_A 163 V---FDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQES-SLLRELVTLNDLEPKAANCTKILVWHT 231 (253)
T ss_dssp S---SCTTSTTCCCGGGEEEEHHHHHHSTTCCCCSSSSCTTCHHH-HHHHHHCCGGGEEECHHHHTSCCEECC
T ss_pred c---cCCCCCccceeeeeEEEehhhhhCCCceeccccCCCcchhh-HHHHhhhhHhhcEecCCCCCEEEEEec
Confidence 8 5899999999999999999776 599665444334445557 799999743 36789999995
No 4
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=46.21 E-value=5.5 Score=29.03 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=13.7
Q ss_pred CccEEEEe-cCCCcccHHh
Q 042066 16 LSGIVHFA-GVSNVYDLAF 33 (147)
Q Consensus 16 ~~GVVyFa-DDDNtYdl~l 33 (147)
..|+++|| ||+.+|+..|
T Consensus 80 vkG~avFaS~d~sVy~a~l 98 (106)
T 3nrf_A 80 VEGDAIFASEDDAVYGASL 98 (106)
T ss_dssp EEEEEEEEESSSGGGGEEE
T ss_pred eeeEEEEeeCChhheeeeE
Confidence 47888887 6689998654
No 5
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=44.76 E-value=52 Score=23.04 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=15.5
Q ss_pred ceeEEecceec-CCeeEEEEe
Q 042066 56 QKVIIEGPVCD-SSQVIGWHL 75 (147)
Q Consensus 56 ~~~~vEgPvc~-~g~V~gW~~ 75 (147)
..+..-.||.+ +|+++|-=+
T Consensus 105 ~~~~~~~PV~~~~g~viGvv~ 125 (142)
T 3by8_A 105 QALRVFTPIYDENHKQIGVVA 125 (142)
T ss_dssp CEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEEEEeEEcCCCCEEEEEE
Confidence 46888889986 689998644
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=39.32 E-value=27 Score=25.33 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=25.2
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhh
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELR 38 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR 38 (147)
.||.||+.. ..-.|.|.|+|..++...++++-
T Consensus 75 a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~ 106 (240)
T 3bcv_A 75 ACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMY 106 (240)
T ss_dssp HHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHH
T ss_pred HHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHH
Confidence 578888764 23489999999999998888753
No 7
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=36.73 E-value=62 Score=22.16 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=15.3
Q ss_pred ceeEEecceec-CCeeEEEEe
Q 042066 56 QKVIIEGPVCD-SSQVIGWHL 75 (147)
Q Consensus 56 ~~~~vEgPvc~-~g~V~gW~~ 75 (147)
..+..-.||.+ +|+++|-=+
T Consensus 100 ~~~~~~~PV~~~~g~viGvv~ 120 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVS 120 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEE
T ss_pred eeEEEEEeEECCCCCEEEEEE
Confidence 36777789986 689998644
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=31.21 E-value=30 Score=25.39 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=59.3
Q ss_pred hhhhHHHHHHhcCCccEEEEecCCCcccHHhhHhhh-cceeecccceeeeecCcceeEEecceecCCeeE-EEEeccCCC
Q 042066 3 QRNVALKHIEHHRLSGIVHFAGVSNVYDLAFFDELR-DIEVYGAWPVALLSANKQKVIIEGPVCDSSQVI-GWHLKKLNN 80 (147)
Q Consensus 3 qRN~AL~~Ir~~~~~GVVyFaDDDNtYdl~lFdemR-~~~~vgvWPVG~vg~~~~~~~vEgPvc~~g~V~-gW~~~~~~~ 80 (147)
.||.|++.. ..-.|.|.|+|..++...++++- ....- =-++++++ ...... .-.++..+ .+.......
T Consensus 79 a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~--~~~~~v~~---~~~~~~-~~~~~~~~~~~~~~~~~~ 148 (255)
T 1qg8_A 79 LINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTH--PEKAVIYS---ASKTYH-LNENRDIVKETVRPAAQV 148 (255)
T ss_dssp HHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHC--TTCCEEEE---EEEEEE-EC---CEEEEEEECCCSC
T ss_pred HHHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhC--CCceEEEe---ceEEEE-eCCCCcchhhccCchHHH
Confidence 467777653 33489999999999988888743 22211 01233332 111110 00112222 211111001
Q ss_pred CCCCCCCcccceeeeecccccC-C----CCCCCCCCCCCcccchHHHHHhhhccc---ccccccccc
Q 042066 81 ETDAKPPIHVSSFAFNSSILWD-P----ERWGRPSSVQQTSQVKTPYLLRMFGYE---CFSNTLGNH 139 (147)
Q Consensus 81 ~~~R~fpiDmAGFA~ns~lL~~-p----~~f~rp~~~p~~~~ds~~Fl~~lv~~~---~~~~~~~~~ 139 (147)
.......+..++++++.+++-+ . ..|.. ...-...+|. .|..++.... .+.+.+..|
T Consensus 149 ~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~-~~~~~~~eD~-~~~~r~~~~g~~~~~~~~~~~~ 213 (255)
T 1qg8_A 149 TWNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDE-SPAFYRIGDA-RFFWRVNHFYPFYPLDEELDLN 213 (255)
T ss_dssp BSCCTTTSCGGGEEEETHHHHHHHHHHSSSSCC-CGGGSTTHHH-HHHHHHTTTCCBEEEEEEEEEE
T ss_pred HHhhcCCCccceEEEEHHHHHhhcccccccccC-CcccchHHHH-HHHHHHHHhCCEEEecCcEEEE
Confidence 1123345667788888887765 2 23331 1122345666 6766665543 334444443
No 9
>1l4d_B Streptokinase; plasminogen, protein complex, hydrolase/hydrolase activator complex; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1
Probab=20.24 E-value=26 Score=25.91 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.2
Q ss_pred CccEEEEecCCCcccH
Q 042066 16 LSGIVHFAGVSNVYDL 31 (147)
Q Consensus 16 ~~GVVyFaDDDNtYdl 31 (147)
.+|-|||||-|++-++
T Consensus 87 r~gkvy~A~~dGSVtl 102 (122)
T 1l4d_B 87 RNGKVYFADKDGSVTL 102 (122)
T ss_dssp TTCCEECCCTTSEEEC
T ss_pred cCCcEEEecCCCceec
Confidence 3899999999987664
No 10
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=20.20 E-value=79 Score=23.96 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=22.2
Q ss_pred hHHHHHHhc---CCccEEEEecCCCcccHHhhHhh
Q 042066 6 VALKHIEHH---RLSGIVHFAGVSNVYDLAFFDEL 37 (147)
Q Consensus 6 ~AL~~Ir~~---~~~GVVyFaDDDNtYdl~lFdem 37 (147)
.||+++-++ ..+-+++|+|..| |++.|+..
T Consensus 212 ~al~~l~~~lgi~~~~~ia~GD~~N--Di~ml~~a 244 (285)
T 3pgv_A 212 HALEAVAKMLGYTLSDCIAFGDGMN--DAEMLSMA 244 (285)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECSGG--GHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHEEEECCcHh--hHHHHHhc
Confidence 578888665 4567999999766 77777653
Done!