BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042070
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal
Sensor Domain Of Centrin
Length = 96
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 33 PYVPRAVVAPDTENVKGTWGHEHNNMSVLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNP 92
Y + VV+ + KG G +++ FD DG G I E R +GF P
Sbjct: 4 SYKAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEP 63
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 33 PYVPRAVVAPDTENVKGTWGHEHNNMSVLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNP 92
Y + VV+ + KG G +++ FD DG G I E R +GF P
Sbjct: 2 SYKAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEP 61
>pdb|4DMR|A Chain A, Reduced Dmso Reductase From Rhodobacter Capsulatus With
Bound Dmso Substrate
Length = 823
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 177 SRNAFDIFGWIASKLEWGALYILAKDDEGYLSKEAVRRCFDGSLFDYCAKVHKGPAAKM 235
+R+ +DIF +A +L GA + KD+ G++ S +D AK K +M
Sbjct: 550 ARSDYDIFAAVAERLGKGAEFTEGKDEMGWIK----------SFYDDAAKQGKAAGVQM 598
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 177 SRNAFDIFGWIASKLEWGALYILAKDDEGYLSKEAVRRCFDGSLFDYCAKVHKGPAAKM 235
+R+ +DIF +A +L GA + KD+ G++ S +D AK K +M
Sbjct: 550 ARSDYDIFAAVAERLGKGAEFTEGKDEMGWIK----------SFYDDAAKQGKAAGVQM 598
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 177 SRNAFDIFGWIASKLEWGALYILAKDDEGYLSKEAVRRCFDGSLFDYCAKVHKGPAAKM 235
+R+ +DIF +A +L GA + KD+ G++ S +D AK K +M
Sbjct: 550 ARSDYDIFAAVAERLGKGAEFTEGKDEMGWIK----------SFYDDAAKQGKAAGVEM 598
>pdb|2YY3|A Chain A, Crystal Structure Of Translation Elongation Factor Ef-1
Beta From Pyrococcus Horikoshii
pdb|2YY3|B Chain B, Crystal Structure Of Translation Elongation Factor Ef-1
Beta From Pyrococcus Horikoshii
pdb|2YY3|C Chain C, Crystal Structure Of Translation Elongation Factor Ef-1
Beta From Pyrococcus Horikoshii
Length = 91
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 148 VNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILAKDDEGY 206
VN + + K + +P+K + + + R FG +A K Y+L +D+EGY
Sbjct: 19 VNLDELEEKLKKVIPEK------YGLAKVEREPI-AFGLVALKF-----YVLGRDEEGY 65
>pdb|2Q9M|A Chain A, 4-Substituted Trinems As Broad Spectrum-Lactamase
Inhibitors: Structure-Based Design, Synthesis And
Biological Activity
pdb|2Q9N|A Chain A, 4-Substituted Trinems As Broad Spectrum-Lactamase
Inhibitors: Structure-Based Design, Synthesis And
Biological Activity
Length = 359
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 19 ARKVHDDLDTKLPKPYVPRAVVAPDTENVKGTWGHEHNNMSVLQQHAAFFDQDGDGII 76
A V + D+K+ +P A V P VK +W H+ + + AF + GI+
Sbjct: 279 ANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGSTGGFGSYVAFIPEKQIGIV 336
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 66 AFFDQDGDGIIYPWETFRGFRLIGFNP 92
+ FD+DGDG I E R +G NP
Sbjct: 23 SLFDKDGDGTITTKELGTVMRSLGQNP 49
>pdb|1GCE|A Chain A, Structure Of The Beta-Lactamase Of Enterobacter Cloacae
Gc1
pdb|1GA0|A Chain A, Structure Of The E. Cloacae Gc1 Beta-Lactamase With A
Cephalosporin Sulfone Inhibitor
pdb|1ONH|A Chain A, Gc1 Beta-Lactamase With A Penem Inhibitor
Length = 364
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 19 ARKVHDDLDTKLPKPYVPRAVVAPDTENVKGTWGHEHNNMSVLQQHAAFFDQDGDGII 76
A V + D+K+ +P A V P VK +W H+ + + AF + GI+
Sbjct: 283 ANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGSTGGFGSYVAFIPEKQIGIV 340
>pdb|1RGZ|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed
With Transition-State Analog Of Cefotaxime
pdb|1Q2Q|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed
With Penem Way185229
Length = 363
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 19 ARKVHDDLDTKLPKPYVPRAVVAPDTENVKGTWGHEHNNMSVLQQHAAFFDQDGDGII 76
A V + D+K+ +P A V P VK +W H+ + + AF + GI+
Sbjct: 282 ANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGSTGGFGSYVAFIPEKQIGIV 339
>pdb|1BLS|A Chain A, Crystallographic Structure Of A Phosphonate Derivative Of
The Enterobacter Cloacae P99 Cephalosporinase:
Mechanistic Interpretation Of A Beta-Lactamase
Transition State Analog
pdb|1BLS|B Chain B, Crystallographic Structure Of A Phosphonate Derivative Of
The Enterobacter Cloacae P99 Cephalosporinase:
Mechanistic Interpretation Of A Beta-Lactamase
Transition State Analog
pdb|1XX2|A Chain A, Refinement Of P99 Beta-Lactamase From Enterobacter Cloacae
pdb|1XX2|B Chain B, Refinement Of P99 Beta-Lactamase From Enterobacter Cloacae
Length = 361
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 19 ARKVHDDLDTKLPKPYVPRAVVAPDTENVKGTWGHEHNNMSVLQQHAAFFDQDGDGII 76
A V + D+K+ +P A V P VK +W H+ + + AF + GI+
Sbjct: 280 ANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGSTGGFGSYVAFIPEKQIGIV 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,567,697
Number of Sequences: 62578
Number of extensions: 319678
Number of successful extensions: 738
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 12
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)