Query 042070
Match_columns 236
No_of_seqs 140 out of 169
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 02:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05042 Caleosin: Caleosin re 100.0 2.7E-97 6E-102 633.0 14.1 174 53-226 1-174 (174)
2 PTZ00183 centrin; Provisional 95.6 0.025 5.5E-07 44.5 5.1 136 60-218 18-154 (158)
3 KOG0027 Calmodulin and related 95.5 0.032 7E-07 45.4 5.6 102 60-216 9-111 (151)
4 PF13499 EF-hand_7: EF-hand do 94.8 0.021 4.6E-07 39.7 2.2 60 66-174 7-66 (66)
5 PF13499 EF-hand_7: EF-hand do 93.6 0.12 2.7E-06 35.8 4.1 65 149-216 1-66 (66)
6 PTZ00184 calmodulin; Provision 93.3 0.32 6.9E-06 37.5 6.4 132 60-215 12-145 (149)
7 COG5126 FRQ1 Ca2+-binding prot 93.3 0.076 1.6E-06 45.7 3.0 131 60-215 21-153 (160)
8 cd00051 EFh EF-hand, calcium b 93.2 0.13 2.7E-06 33.0 3.4 29 61-89 2-30 (63)
9 PF13405 EF-hand_6: EF-hand do 91.6 0.1 2.2E-06 32.2 1.3 24 66-89 7-31 (31)
10 PF00036 EF-hand_1: EF hand; 90.7 0.23 5E-06 31.0 2.2 27 150-176 2-28 (29)
11 cd00051 EFh EF-hand, calcium b 90.4 1 2.2E-05 28.6 5.3 59 150-215 2-61 (63)
12 PF13405 EF-hand_6: EF-hand do 89.9 0.26 5.6E-06 30.3 2.0 27 149-175 1-27 (31)
13 PF01023 S_100: S-100/ICaBP ty 87.3 0.49 1.1E-05 32.4 2.2 27 151-177 9-37 (44)
14 smart00054 EFh EF-hand, calciu 86.5 1.2 2.5E-05 24.2 3.2 27 150-176 2-28 (29)
15 smart00027 EH Eps15 homology d 84.7 1.3 2.8E-05 33.5 3.6 29 59-87 10-38 (96)
16 PF00036 EF-hand_1: EF hand; 83.4 0.5 1.1E-05 29.5 0.7 27 62-88 3-29 (29)
17 PTZ00184 calmodulin; Provision 82.5 2 4.3E-05 33.0 3.9 27 148-174 120-146 (149)
18 smart00027 EH Eps15 homology d 81.4 3.9 8.5E-05 30.8 5.1 57 148-213 10-67 (96)
19 PF13202 EF-hand_5: EF hand; P 77.2 2.1 4.5E-05 25.7 2.0 24 151-174 2-25 (25)
20 cd00052 EH Eps15 homology doma 76.5 7.8 0.00017 26.2 4.9 54 150-212 1-55 (67)
21 cd05024 S-100A10 S-100A10: A s 75.5 3.2 7E-05 32.7 3.1 25 152-177 12-36 (91)
22 cd05025 S-100A1 S-100A1: S-100 73.2 7.2 0.00016 29.2 4.4 33 146-178 50-82 (92)
23 KOG0027 Calmodulin and related 71.0 4.3 9.3E-05 33.0 3.0 34 60-93 86-119 (151)
24 cd05026 S-100Z S-100Z: S-100Z 70.7 8.1 0.00018 29.4 4.3 64 150-215 12-78 (93)
25 PF13833 EF-hand_8: EF-hand do 69.3 4.5 9.7E-05 27.0 2.3 32 145-176 22-53 (54)
26 cd05031 S-100A10_like S-100A10 67.2 13 0.00027 28.0 4.6 28 60-87 9-38 (94)
27 cd05022 S-100A13 S-100A13: S-1 65.0 6.8 0.00015 30.2 2.8 57 150-213 10-70 (89)
28 PTZ00183 centrin; Provisional 64.6 19 0.00042 28.0 5.4 62 149-216 54-116 (158)
29 cd00052 EH Eps15 homology doma 64.6 3.6 7.9E-05 27.8 1.1 25 66-90 6-30 (67)
30 KOG0044 Ca2+ sensor (EF-Hand s 63.6 11 0.00025 33.3 4.3 70 153-224 105-183 (193)
31 KOG0044 Ca2+ sensor (EF-Hand s 62.2 12 0.00026 33.2 4.1 35 146-180 145-179 (193)
32 cd05025 S-100A1 S-100A1: S-100 62.0 11 0.00024 28.1 3.5 65 147-213 8-75 (92)
33 cd05029 S-100A6 S-100A6: S-100 59.8 8.2 0.00018 29.4 2.4 57 152-212 14-73 (88)
34 cd00213 S-100 S-100: S-100 dom 56.9 26 0.00057 25.6 4.7 64 149-216 9-77 (88)
35 KOG0030 Myosin essential light 55.7 6.5 0.00014 33.9 1.4 103 57-175 9-115 (152)
36 KOG0041 Predicted Ca2+-binding 54.9 12 0.00026 34.3 3.0 61 147-210 98-172 (244)
37 PF12763 EF-hand_4: Cytoskelet 54.2 25 0.00054 28.0 4.4 55 148-212 10-65 (104)
38 PF05901 Excalibur: Excalibur 53.4 5.9 0.00013 26.1 0.6 9 67-75 26-34 (37)
39 cd00252 SPARC_EC SPARC_EC; ext 53.0 31 0.00068 27.9 4.9 57 149-216 49-106 (116)
40 cd05023 S-100A11 S-100A11: S-1 53.0 23 0.0005 27.1 3.9 57 149-212 10-74 (89)
41 cd05030 calgranulins Calgranul 50.3 18 0.00039 27.2 2.9 62 151-214 11-75 (88)
42 PF09279 EF-hand_like: Phospho 43.5 24 0.00051 25.8 2.6 29 150-179 2-31 (83)
43 PF09435 DUF2015: Fungal prote 42.7 18 0.00038 30.6 2.0 81 92-183 4-103 (128)
44 PF15192 TMEM213: TMEM213 fami 40.8 23 0.00049 27.7 2.1 18 180-197 41-58 (82)
45 KOG0034 Ca2+/calmodulin-depend 39.9 82 0.0018 27.6 5.8 126 66-219 40-176 (187)
46 PLN02964 phosphatidylserine de 37.6 54 0.0012 34.1 4.9 63 150-219 181-244 (644)
47 TIGR03641 cas1_HMARI CRISPR-as 36.5 34 0.00075 31.9 3.1 70 66-152 170-239 (322)
48 TIGR00287 cas1 CRISPR-associat 36.1 47 0.001 30.6 3.9 76 65-157 174-250 (323)
49 PF01328 Peroxidase_2: Peroxid 35.8 92 0.002 29.6 5.8 150 56-217 51-236 (317)
50 cd05027 S-100B S-100B: S-100B 33.1 44 0.00095 25.4 2.7 28 149-176 9-38 (88)
51 PF12437 GSIII_N: Glutamine sy 30.6 17 0.00036 31.9 0.0 24 61-86 74-97 (164)
52 PF10384 Scm3: Centromere prot 29.5 34 0.00074 25.0 1.5 12 148-159 16-27 (58)
53 KOG4223 Reticulocalbin, calume 28.6 95 0.0021 29.9 4.6 60 151-217 244-304 (325)
54 cd05031 S-100A10_like S-100A10 28.5 59 0.0013 24.3 2.7 72 148-221 8-83 (94)
55 cd05030 calgranulins Calgranul 27.2 87 0.0019 23.5 3.4 34 145-178 48-81 (88)
56 PF10574 UPF0552: Uncharacteri 27.2 50 0.0011 30.3 2.4 53 116-175 56-121 (224)
57 cd05029 S-100A6 S-100A6: S-100 26.6 91 0.002 23.6 3.5 30 144-175 28-58 (88)
58 PF12347 HJURP_C: Holliday jun 26.4 22 0.00049 26.2 0.1 35 126-160 2-41 (64)
59 KOG0028 Ca2+-binding protein ( 26.3 30 0.00065 30.5 0.8 31 62-92 36-66 (172)
60 cd05023 S-100A11 S-100A11: S-1 25.9 88 0.0019 23.8 3.2 31 146-176 50-80 (89)
61 PF10660 MitoNEET_N: Iron-cont 25.5 27 0.00057 26.2 0.3 38 79-116 22-59 (64)
62 TIGR03638 cas1_ECOLI CRISPR-as 25.2 79 0.0017 28.8 3.4 67 65-147 154-221 (269)
63 KOG0036 Predicted mitochondria 24.2 1.7E+02 0.0037 29.5 5.6 117 67-217 22-157 (463)
64 cd05026 S-100Z S-100Z: S-100Z 24.2 99 0.0021 23.4 3.2 31 147-177 52-82 (93)
65 PRK12309 transaldolase/EF-hand 22.5 1.3E+02 0.0027 29.4 4.3 47 150-216 336-383 (391)
66 cd05022 S-100A13 S-100A13: S-1 22.4 1.2E+02 0.0027 23.2 3.5 29 148-176 47-75 (89)
67 TIGR03640 cas1_DVULG CRISPR-as 22.0 85 0.0019 29.4 3.0 67 66-149 187-253 (340)
68 TIGR03639 cas1_NMENI CRISPR-as 21.9 2.6E+02 0.0055 25.6 6.0 84 77-175 167-251 (278)
69 PF01867 Cas_Cas1: CRISPR asso 21.5 64 0.0014 29.0 2.0 65 67-148 174-238 (282)
70 PF12860 PAS_7: PAS fold 20.8 1.1E+02 0.0023 23.0 2.8 54 138-191 10-67 (115)
71 KOG4251 Calcium binding protei 20.4 91 0.002 29.7 2.8 45 133-177 84-130 (362)
72 KOG0815 60S acidic ribosomal p 20.3 88 0.0019 29.0 2.6 43 72-119 194-241 (245)
No 1
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=100.00 E-value=2.7e-97 Score=632.98 Aligned_cols=174 Identities=63% Similarity=1.176 Sum_probs=172.5
Q ss_pred CCCCCCChhccccccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeecccccccc
Q 042070 53 HEHNNMSVLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKH 132 (236)
Q Consensus 53 ~~~~~~TvLQqHvaFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kH 132 (236)
|+|++||||||||+|||||+||||||||||+|||+||||+++|+++|++||++|||+|+|+|+|||+|||||+||||+||
T Consensus 1 h~~~~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kH 80 (174)
T PF05042_consen 1 HDHNNMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKH 80 (174)
T ss_pred CCcccccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeeccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccchhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhhcCCCCccchhhh
Q 042070 133 GSDTGTYDTEGRYVPVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILAKDDEGYLSKEAV 212 (236)
Q Consensus 133 GSDSg~YD~eGRFvP~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~~~~dG~l~Kedi 212 (236)
|||||+||+||||||+|||+||+|||+++||+||++||++|+++|||++||+||+|+.+||.++|.|+||+||+|+||+|
T Consensus 81 GSDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~i 160 (174)
T PF05042_consen 81 GSDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDI 160 (174)
T ss_pred CCCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHh
Q 042070 213 RRCFDGSLFDYCAK 226 (236)
Q Consensus 213 R~vYDGSlF~~ia~ 226 (236)
|+|||||||++|||
T Consensus 161 R~vYDGSlF~~iak 174 (174)
T PF05042_consen 161 RGVYDGSLFYKIAK 174 (174)
T ss_pred hhhcchHHHHHhhC
Confidence 99999999999986
No 2
>PTZ00183 centrin; Provisional
Probab=95.59 E-value=0.025 Score=44.45 Aligned_cols=136 Identities=16% Similarity=0.251 Sum_probs=81.7
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccc
Q 042070 60 VLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTY 139 (236)
Q Consensus 60 vLQqHvaFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~Y 139 (236)
.|++=...||+|+||.|...|=...++.+|++.--..+..++--+--.-.-..+| .-|.. -++...+..+
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~--~eF~~----~~~~~~~~~~---- 87 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDF--EEFLD----IMTKKLGERD---- 87 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeH--HHHHH----HHHHHhcCCC----
Confidence 4566667799999999999999999999998765544443332221111111111 11111 1111111111
Q ss_pred cccccccccchhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHH-HHhhcCCCCccchhhhcccccc
Q 042070 140 DTEGRYVPVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGAL-YILAKDDEGYLSKEAVRRCFDG 218 (236)
Q Consensus 140 D~eGRFvP~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~-y~L~~~~dG~l~KediR~vYDG 218 (236)
-.+..+.+|..+++++.+.|+..|+..++.......+ .-|...+ -.+-.+++|.|+.+++..+..+
T Consensus 88 ------~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 88 ------PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETIT-------DEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred ------cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 1246789999999999889999999988875432211 1222222 2344578999999998877654
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=95.53 E-value=0.032 Score=45.41 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=79.9
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccc
Q 042070 60 VLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTY 139 (236)
Q Consensus 60 vLQqHvaFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~Y 139 (236)
.|++=-..||.|+||.|.-.|--.-+|.||.+
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~------------------------------------------------ 40 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLRSLGQN------------------------------------------------ 40 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC------------------------------------------------
Confidence 45566678999999999999999999999998
Q ss_pred cccccccccchhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhcccc
Q 042070 140 DTEGRYVPVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRRCF 216 (236)
Q Consensus 140 D~eGRFvP~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~vY 216 (236)
.......+|++..+.+..+.+.+.|+..|+..+....+..- ...-|-.-+|.+. .+.+|+++.++++.+.
T Consensus 41 -----~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~--~~~~el~eaF~~fD~d~~G~Is~~el~~~l 111 (151)
T KOG0027|consen 41 -----PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE--ASSEELKEAFRVFDKDGDGFISASELKKVL 111 (151)
T ss_pred -----CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc--ccHHHHHHHHHHHccCCCCcCcHHHHHHHH
Confidence 55677888999999888889999999999987765443322 3444666666665 4567999999998764
No 4
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.80 E-value=0.021 Score=39.67 Aligned_cols=60 Identities=22% Similarity=0.327 Sum_probs=48.8
Q ss_pred ccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccccccccc
Q 042070 66 AFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTYDTEGRY 145 (236)
Q Consensus 66 aFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~YD~eGRF 145 (236)
.-||.|+||.|...|--..++.+|.... -..
T Consensus 7 ~~~D~d~~G~i~~~el~~~~~~~~~~~~-------------------------------------------------~~~ 37 (66)
T PF13499_consen 7 KKFDKDGDGYISKEELRRALKHLGRDMS-------------------------------------------------DEE 37 (66)
T ss_dssp HHHSTTSSSEEEHHHHHHHHHHTTSHST-------------------------------------------------HHH
T ss_pred HHHcCCccCCCCHHHHHHHHHHhccccc-------------------------------------------------HHH
Confidence 4589999999999998888888876655 234
Q ss_pred cccchhHHHHhhcCCCCCCCCHHHHHHHH
Q 042070 146 VPVNFENIFSKYARTVPDKLTRAEIWHMT 174 (236)
Q Consensus 146 vP~kFE~iFsKya~~~pd~LT~~El~~m~ 174 (236)
+.+..+.+|..++.++.+.+++.|..+++
T Consensus 38 ~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 38 SDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 44577788999999998999999998764
No 5
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.61 E-value=0.12 Score=35.77 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=43.6
Q ss_pred chhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhcccc
Q 042070 149 NFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRRCF 216 (236)
Q Consensus 149 kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~vY 216 (236)
+..++|.+|++++.+.||..|+.++++........-- ..-++..++..+ .+.||.|+-++...+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEE---SDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHH---HHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHH---HHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4578999999999999999999999998865433110 011112222222 3678999988876543
No 6
>PTZ00184 calmodulin; Provisional
Probab=93.34 E-value=0.32 Score=37.48 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=72.4
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeecccccc-ccCCCCcc
Q 042070 60 VLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKA-KHGSDTGT 138 (236)
Q Consensus 60 vLQqHvaFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~-kHGSDSg~ 138 (236)
.+++....+|.|++|.|...|=...+..+|.++--..+..++-.+. ....+-+.- .=++.-++.. .+.
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d---~~~~g~i~~---~ef~~~l~~~~~~~----- 80 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD---ADGNGTIDF---PEFLTLMARKMKDT----- 80 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcC---cCCCCcCcH---HHHHHHHHHhccCC-----
Confidence 4667778899999999999998888888877644322222221111 111221210 1111111111 000
Q ss_pred ccccccccccchhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHH-HHhhcCCCCccchhhhccc
Q 042070 139 YDTEGRYVPVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGAL-YILAKDDEGYLSKEAVRRC 215 (236)
Q Consensus 139 YD~eGRFvP~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~-y~L~~~~dG~l~KediR~v 215 (236)
+ .....+.+|..|+..+.+.||..|+..+++.. |.....-+...+ -.+-.+.+|.++-++...+
T Consensus 81 -~-----~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 81 -D-----SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-------GEKLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred -c-----HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-------CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 0 12356788999988887889999998888652 211122222222 2333467788877666543
No 7
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=93.27 E-value=0.076 Score=45.69 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=84.8
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccc
Q 042070 60 VLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTY 139 (236)
Q Consensus 60 vLQqHvaFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~Y 139 (236)
.|++=-.+||+|+||-|.=.|-=.=+|+||||+--+.+.=+ ++. ..+..+-+ -|+..|.-+-+.
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l-~~~---~d~~~~~i---df~~Fl~~ms~~--------- 84 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKL-FEE---IDAGNETV---DFPEFLTVMSVK--------- 84 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHH-HHh---ccCCCCcc---CHHHHHHHHHHH---------
Confidence 45666789999999999999988889999999987776533 222 11100111 111111111110
Q ss_pred ccccccc-ccchhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhccc
Q 042070 140 DTEGRYV-PVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRRC 215 (236)
Q Consensus 140 D~eGRFv-P~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~v 215 (236)
..|.. .+++.+.|.-|++++.+.++..||.++++.-.+..+. -|-..+.... .|.||.+.-++....
T Consensus 85 --~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~d-------eev~~ll~~~d~d~dG~i~~~eF~~~ 153 (160)
T COG5126 85 --LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSD-------EEVEKLLKEYDEDGDGEIDYEEFKKL 153 (160)
T ss_pred --hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCH-------HHHHHHHHhcCCCCCceEeHHHHHHH
Confidence 01222 6799999999999999999999999999965544433 2333333333 367999988877653
No 8
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.22 E-value=0.13 Score=32.96 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=24.2
Q ss_pred hccccccccCCCCceeccchhhhHHHhhc
Q 042070 61 LQQHAAFFDQDGDGIIYPWETFRGFRLIG 89 (236)
Q Consensus 61 LQqHvaFFDrD~DGiI~P~DTy~Gfr~LG 89 (236)
+++....+|+|++|.|.+.|-..-++.+|
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 45667788999999999999888777776
No 9
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=91.60 E-value=0.1 Score=32.17 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=20.4
Q ss_pred ccccCCCCceeccchhhhHHH-hhc
Q 042070 66 AFFDQDGDGIIYPWETFRGFR-LIG 89 (236)
Q Consensus 66 aFFDrD~DGiI~P~DTy~Gfr-~LG 89 (236)
.-||+|+||.|.+-|--..++ +||
T Consensus 7 ~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 7 KMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 458999999999999999998 787
No 10
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=90.65 E-value=0.23 Score=31.01 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=24.5
Q ss_pred hhHHHHhhcCCCCCCCCHHHHHHHHHh
Q 042070 150 FENIFSKYARTVPDKLTRAEIWHMTQS 176 (236)
Q Consensus 150 FE~iFsKya~~~pd~LT~~El~~m~~~ 176 (236)
.+++|++|++++.+.++..|+.++++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 578999999999999999999999864
No 11
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=90.45 E-value=1 Score=28.59 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=41.6
Q ss_pred hhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhccc
Q 042070 150 FENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRRC 215 (236)
Q Consensus 150 FE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~v 215 (236)
+..+|..|+.++.+.|+..|+..+++......+ .-++..++..+ .+++|.|+-++...+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLS-------EEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 567899999999899999999999987642222 22333344444 457889988876543
No 12
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=89.93 E-value=0.26 Score=30.33 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=23.8
Q ss_pred chhHHHHhhcCCCCCCCCHHHHHHHHH
Q 042070 149 NFENIFSKYARTVPDKLTRAEIWHMTQ 175 (236)
Q Consensus 149 kFE~iFsKya~~~pd~LT~~El~~m~~ 175 (236)
++.++|..|++++.+.+|..|+..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 468899999999999999999999987
No 13
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=87.27 E-value=0.49 Score=32.37 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=22.5
Q ss_pred hHHHHhhcC--CCCCCCCHHHHHHHHHhc
Q 042070 151 ENIFSKYAR--TVPDKLTRAEIWHMTQSS 177 (236)
Q Consensus 151 E~iFsKya~--~~pd~LT~~El~~m~~~n 177 (236)
=++|.|||. +.++.|+..|+.+|++.+
T Consensus 9 I~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 9 IDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 468999994 456799999999999875
No 14
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=86.55 E-value=1.2 Score=24.21 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=23.5
Q ss_pred hhHHHHhhcCCCCCCCCHHHHHHHHHh
Q 042070 150 FENIFSKYARTVPDKLTRAEIWHMTQS 176 (236)
Q Consensus 150 FE~iFsKya~~~pd~LT~~El~~m~~~ 176 (236)
+..+|+.++.+..+.++..|+..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999888889999999988865
No 15
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=84.72 E-value=1.3 Score=33.47 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=23.1
Q ss_pred ChhccccccccCCCCceeccchhhhHHHh
Q 042070 59 SVLQQHAAFFDQDGDGIIYPWETFRGFRL 87 (236)
Q Consensus 59 TvLQqHvaFFDrD~DGiI~P~DTy~Gfr~ 87 (236)
..|++.-.-||.|+||.|...|-...+|.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 35677777899999999998887777763
No 16
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=83.36 E-value=0.5 Score=29.46 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=20.2
Q ss_pred ccccccccCCCCceeccchhhhHHHhh
Q 042070 62 QQHAAFFDQDGDGIIYPWETFRGFRLI 88 (236)
Q Consensus 62 QqHvaFFDrD~DGiI~P~DTy~Gfr~L 88 (236)
++=..-||+|+||.|..-|=-..++.|
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 344556999999999988866666554
No 17
>PTZ00184 calmodulin; Provisional
Probab=82.53 E-value=2 Score=33.02 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=19.5
Q ss_pred cchhHHHHhhcCCCCCCCCHHHHHHHH
Q 042070 148 VNFENIFSKYARTVPDKLTRAEIWHMT 174 (236)
Q Consensus 148 ~kFE~iFsKya~~~pd~LT~~El~~m~ 174 (236)
+..+.||.+++++..+.+++.|...++
T Consensus 120 ~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 120 EEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 456677777777777788888877655
No 18
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=81.45 E-value=3.9 Score=30.85 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=40.8
Q ss_pred cchhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhc
Q 042070 148 VNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVR 213 (236)
Q Consensus 148 ~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR 213 (236)
.++.++|..+++++.+.|+..|+.++++... .....++ -.+.+. .+.+|.|..++.-
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~-------~~~~ev~--~i~~~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG-------LPQTLLA--KIWNLADIDNDGELDKDEFA 67 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC-------CCHHHHH--HHHHHhcCCCCCCcCHHHHH
Confidence 4788999999999989999999999998732 2223333 233333 3568999988764
No 19
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=77.25 E-value=2.1 Score=25.71 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=21.5
Q ss_pred hHHHHhhcCCCCCCCCHHHHHHHH
Q 042070 151 ENIFSKYARTVPDKLTRAEIWHMT 174 (236)
Q Consensus 151 E~iFsKya~~~pd~LT~~El~~m~ 174 (236)
+++|++.+.++.+.+|..|+.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 678999999999999999999874
No 20
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=76.48 E-value=7.8 Score=26.18 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=37.4
Q ss_pred hhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhh
Q 042070 150 FENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAV 212 (236)
Q Consensus 150 FE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~Kedi 212 (236)
|.++|..+++++.+.+|..|+.++++... . ..-++.-.+..+ .+.+|.+.-++.
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g-------~--~~~~~~~i~~~~d~~~~g~i~~~ef 55 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSG-------L--PRSVLAQIWDLADTDKDGKLDKEEF 55 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcC-------C--CHHHHHHHHHHhcCCCCCcCCHHHH
Confidence 46789999998888999999999887642 1 233444444443 356788887665
No 21
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=75.49 E-value=3.2 Score=32.72 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.9
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHhc
Q 042070 152 NIFSKYARTVPDKLTRAEIWHMTQSS 177 (236)
Q Consensus 152 ~iFsKya~~~pd~LT~~El~~m~~~n 177 (236)
++|.||| +.++.|+..|+.+|++.+
T Consensus 12 ~~FhkYa-G~~~tLsk~Elk~Ll~~E 36 (91)
T cd05024 12 LTFHKFA-GEKNYLNRDDLQKLMEKE 36 (91)
T ss_pred HHHHHHc-CCCCcCCHHHHHHHHHHH
Confidence 5799999 556899999999999876
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=73.20 E-value=7.2 Score=29.16 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=26.6
Q ss_pred cccchhHHHHhhcCCCCCCCCHHHHHHHHHhcc
Q 042070 146 VPVNFENIFSKYARTVPDKLTRAEIWHMTQSSR 178 (236)
Q Consensus 146 vP~kFE~iFsKya~~~pd~LT~~El~~m~~~nR 178 (236)
.++..++||+.++.+..+.+++.|...++....
T Consensus 50 s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 50 DADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 345678899999888888999999998887643
No 23
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=71.01 E-value=4.3 Score=32.98 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=25.6
Q ss_pred hhccccccccCCCCceeccchhhhHHHhhcchHH
Q 042070 60 VLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNPI 93 (236)
Q Consensus 60 vLQqHvaFFDrD~DGiI~P~DTy~Gfr~LGf~~~ 93 (236)
.|.+=--.||.|+||.|...|=-.=+..||...-
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 5666667899999999998887666666665543
No 24
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=70.71 E-value=8.1 Score=29.41 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=38.6
Q ss_pred hhHHHHhhc-CCCCC-CCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhccc
Q 042070 150 FENIFSKYA-RTVPD-KLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRRC 215 (236)
Q Consensus 150 FE~iFsKya-~~~pd-~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~v 215 (236)
+-++|.+|+ +++.+ .||..||.++++.+.. +.++.-...-||.-+..-+ .+.||.++=++.-.+
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~--~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l 78 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELT--DFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhH--HhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 446799999 55544 4999999999977420 1111111223555444433 466788887776443
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=69.34 E-value=4.5 Score=27.01 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=28.6
Q ss_pred ccccchhHHHHhhcCCCCCCCCHHHHHHHHHh
Q 042070 145 YVPVNFENIFSKYARTVPDKLTRAEIWHMTQS 176 (236)
Q Consensus 145 FvP~kFE~iFsKya~~~pd~LT~~El~~m~~~ 176 (236)
+.++.++.||+.++..+.+.+++.|...+++.
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 67788999999999999999999999988864
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=67.15 E-value=13 Score=28.01 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=20.1
Q ss_pred hhccccccccC-CC-CceeccchhhhHHHh
Q 042070 60 VLQQHAAFFDQ-DG-DGIIYPWETFRGFRL 87 (236)
Q Consensus 60 vLQqHvaFFDr-D~-DGiI~P~DTy~Gfr~ 87 (236)
.|++--.-||. |+ ||.|...|--.-+++
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 34454556887 97 699999887766665
No 27
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=65.00 E-value=6.8 Score=30.19 Aligned_cols=57 Identities=18% Similarity=0.087 Sum_probs=39.3
Q ss_pred hhHHHHhhcC-CCCCCCCHHHHHHHHHhc-c-cccCcchhHHHHHhHHHHH-HhhcCCCCccchhhhc
Q 042070 150 FENIFSKYAR-TVPDKLTRAEIWHMTQSS-R-NAFDIFGWIASKLEWGALY-ILAKDDEGYLSKEAVR 213 (236)
Q Consensus 150 FE~iFsKya~-~~pd~LT~~El~~m~~~n-R-~~~D~~GW~a~~~EW~~~y-~L~~~~dG~l~KediR 213 (236)
.-++|.+|++ ++.+.|+..|+..+++.+ . ...+. -|...+. .+=.|.||.++=++.-
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~-------~~v~~mi~~~D~d~DG~I~F~EF~ 70 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDV-------EGLEEKMKNLDVNQDSKLSFEEFW 70 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCH-------HHHHHHHHHhCCCCCCCCcHHHHH
Confidence 4578999999 888999999999999873 1 12221 2333333 2334789999887753
No 28
>PTZ00183 centrin; Provisional
Probab=64.60 E-value=19 Score=28.04 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=39.4
Q ss_pred chhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhcccc
Q 042070 149 NFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRRCF 216 (236)
Q Consensus 149 kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~vY 216 (236)
..+.+|..++.+..+.+++.|+..++.......++ .-++..+|.++ .+.+|.|..++++.+.
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~------~~~l~~~F~~~D~~~~G~i~~~e~~~~l 116 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP------REEILKAFRLFDDDKTGKISLKNLKRVA 116 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc------HHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 46677777777776778888877766553222221 22455556655 4677999998887553
No 29
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=64.56 E-value=3.6 Score=27.85 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=20.8
Q ss_pred ccccCCCCceeccchhhhHHHhhcc
Q 042070 66 AFFDQDGDGIIYPWETFRGFRLIGF 90 (236)
Q Consensus 66 aFFDrD~DGiI~P~DTy~Gfr~LGf 90 (236)
.-+|.|+||.|...|--.-++++|+
T Consensus 6 ~~~D~~~~G~i~~~el~~~l~~~g~ 30 (67)
T cd00052 6 RSLDPDGDGLISGDEARPFLGKSGL 30 (67)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHcCC
Confidence 4489999999999998888877764
No 30
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=63.58 E-value=11 Score=33.27 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=42.6
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHhccccc----CcchhHHHHHhHHHHHHhh---cCCCCccchhhhccc--cccchhHH
Q 042070 153 IFSKYARTVPDKLTRAEIWHMTQSSRNAF----DIFGWIASKLEWGALYILA---KDDEGYLSKEAVRRC--FDGSLFDY 223 (236)
Q Consensus 153 iFsKya~~~pd~LT~~El~~m~~~nR~~~----D~~GW~a~~~EW~~~y~L~---~~~dG~l~KediR~v--YDGSlF~~ 223 (236)
.|.-|+.++.+.+|..|+.+++++.-... .| =-....|=.+-.++. .+.||.|+-|+...- =|-+|+..
T Consensus 105 ~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~--~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~ 182 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP--EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRA 182 (193)
T ss_pred hheeecCCCCceEcHHHHHHHHHHHHHHcccccCC--cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHH
Confidence 46677888888999999999888753221 11 111223334444444 488999998776543 24444444
Q ss_pred H
Q 042070 224 C 224 (236)
Q Consensus 224 i 224 (236)
+
T Consensus 183 l 183 (193)
T KOG0044|consen 183 L 183 (193)
T ss_pred h
Confidence 4
No 31
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=62.17 E-value=12 Score=33.17 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=28.7
Q ss_pred cccchhHHHHhhcCCCCCCCCHHHHHHHHHhcccc
Q 042070 146 VPVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNA 180 (236)
Q Consensus 146 vP~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~ 180 (236)
.-+.-+.||+|-++++.+.||+.|..+-.++....
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i 179 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSI 179 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHH
Confidence 44566889999999999999999999887776543
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=61.99 E-value=11 Score=28.11 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=43.0
Q ss_pred ccchhHHHHhhc-CCCCC-CCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhc
Q 042070 147 PVNFENIFSKYA-RTVPD-KLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVR 213 (236)
Q Consensus 147 P~kFE~iFsKya-~~~pd-~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR 213 (236)
.+...++|..|+ +++.+ .|+..|+..+++.+- .+++|.....-++.-++..+ .+.+|.+.-++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~l--g~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTEL--SDFLDAQKDADAVDKIMKELDENGDGEVDFQEFV 75 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHH--HHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence 356778999997 88877 499999999997522 12333333445566555444 3567888876653
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=59.79 E-value=8.2 Score=29.40 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHhhcC-CC-CCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHH-HhhcCCCCccchhhh
Q 042070 152 NIFSKYAR-TV-PDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALY-ILAKDDEGYLSKEAV 212 (236)
Q Consensus 152 ~iFsKya~-~~-pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y-~L~~~~dG~l~Kedi 212 (236)
+||.||+. .. .+.|+..|+.++++......+.. ... |....+ .+-.+.+|.++=++.
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~--t~~--ev~~m~~~~D~d~dG~Idf~EF 73 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL--QDA--EIAKLMEDLDRNKDQEVNFQEY 73 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC--CHH--HHHHHHHHhcCCCCCCCcHHHH
Confidence 68999987 33 46999999999996432222221 112 333333 233467788876654
No 34
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=56.86 E-value=26 Score=25.59 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=40.0
Q ss_pred chhHHHHhhcC--CCCCCCCHHHHHHHHHhcccccCcc--hhHHHHHhHHHHHHhh-cCCCCccchhhhcccc
Q 042070 149 NFENIFSKYAR--TVPDKLTRAEIWHMTQSSRNAFDIF--GWIASKLEWGALYILA-KDDEGYLSKEAVRRCF 216 (236)
Q Consensus 149 kFE~iFsKya~--~~pd~LT~~El~~m~~~nR~~~D~~--GW~a~~~EW~~~y~L~-~~~dG~l~KediR~vY 216 (236)
.+.++|..|++ ++.+.||..|+..+++.+.. .+. +.. .-|+.-++..+ .+.+|.+.-++...+.
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g--~~~~~~~~--~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELP--NFLKNQKD--PEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh--hhccCCCC--HHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 46677999999 78889999999999875221 011 111 22333333222 3567888888775543
No 35
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=55.68 E-value=6.5 Score=33.94 Aligned_cols=103 Identities=26% Similarity=0.404 Sum_probs=63.1
Q ss_pred CCChhccccccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCC---CCC-CCCccceeecccccccc
Q 042070 57 NMSVLQQHAAFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSP---TWL-PSPFFPIYVQNIHKAKH 132 (236)
Q Consensus 57 ~~TvLQqHvaFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~---sw~-PdP~f~Iyi~nIHk~kH 132 (236)
.+..++.=...||+.+||-|.-...=.=+|+||-|+-=|-+.=.+=+ |.... .-+ ..-|+||| -|-+||
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~----~~~~~~~~~rl~FE~fLpm~---q~vakn 81 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQ----PKRREMNVKRLDFEEFLPMY---QQVAKN 81 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcC----cccchhhhhhhhHHHHHHHH---HHHHhc
Confidence 34566666778999999999998888889999999876654322211 22110 001 23467777 455666
Q ss_pred CCCCccccccccccccchhHHHHhhcCCCCCCCCHHHHHHHHH
Q 042070 133 GSDTGTYDTEGRYVPVNFENIFSKYARTVPDKLTRAEIWHMTQ 175 (236)
Q Consensus 133 GSDSg~YD~eGRFvP~kFE~iFsKya~~~pd~LT~~El~~m~~ 175 (236)
-+-++|+ .|=+-.+-+++..-+.+...||.++|.
T Consensus 82 -k~q~t~e--------dfvegLrvFDkeg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 82 -KDQGTYE--------DFVEGLRVFDKEGNGTIMGAELRHVLT 115 (152)
T ss_pred -cccCcHH--------HHHHHHHhhcccCCcceeHHHHHHHHH
Confidence 6677765 344444445555545566666655544
No 36
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=54.89 E-value=12 Score=34.29 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=42.3
Q ss_pred ccchhHHHHhhcCCCCCCCCHHHHHHHHHhccccc--------------CcchhHHHHHhHHHHHHhhcCCCCccchh
Q 042070 147 PVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAF--------------DIFGWIASKLEWGALYILAKDDEGYLSKE 210 (236)
Q Consensus 147 P~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~--------------D~~GW~a~~~EW~~~y~L~~~~dG~l~Ke 210 (236)
-+.++.+|.+|+.+..+.+.+.||..|+..-..+- |.-|=+ ++-|..+.|-.+ ..|-|+++
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgkl-SfreflLIfrka--aagEL~~d 172 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKL-SFREFLLIFRKA--AAGELQED 172 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccch-hHHHHHHHHHHH--hccccccc
Confidence 34788999999999989999999999998754432 333333 455666666665 23555553
No 37
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=54.21 E-value=25 Score=27.98 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=41.2
Q ss_pred cchhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhh
Q 042070 148 VNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAV 212 (236)
Q Consensus 148 ~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~Kedi 212 (236)
++|+.||.+.+. ..+.||..++..++..-.... -.....|.|+ .+.||.|.+++.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~---------~~L~~IW~LaD~~~dG~L~~~EF 65 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPR---------DVLAQIWNLADIDNDGKLDFEEF 65 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSH---------HHHHHHHHHH-SSSSSEEEHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCH---------HHHHHHHhhhcCCCCCcCCHHHH
Confidence 589999998765 447899999998888766543 3445667777 357899998874
No 38
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=53.42 E-value=5.9 Score=26.10 Aligned_cols=9 Identities=67% Similarity=1.165 Sum_probs=7.9
Q ss_pred cccCCCCce
Q 042070 67 FFDQDGDGI 75 (236)
Q Consensus 67 FFDrD~DGi 75 (236)
..|||+|||
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 569999998
No 39
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=53.03 E-value=31 Score=27.88 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=38.2
Q ss_pred chhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHH-hHHHHHHhhcCCCCccchhhhcccc
Q 042070 149 NFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKL-EWGALYILAKDDEGYLSKEAVRRCF 216 (236)
Q Consensus 149 kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~-EW~~~y~L~~~~dG~l~KediR~vY 216 (236)
+..-+|..+++++.+.||..||..+. .++. ...+ .|....- .++||.++.++.+.|+
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~------l~~~---e~~~~~f~~~~D--~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR------LDPN---EHCIKPFFESCD--LDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH------ccch---HHHHHHHHHHHC--CCCCCCCCHHHHHHHH
Confidence 45567999999988899999999875 1221 1111 1222221 2689999999988775
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=53.02 E-value=23 Score=27.06 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=36.2
Q ss_pred chhHHHHhhcCC-CC-CCCCHHHHHHHHHhcc-----cccCcchhHHHHHhHHHHHHh-hcCCCCccchhhh
Q 042070 149 NFENIFSKYART-VP-DKLTRAEIWHMTQSSR-----NAFDIFGWIASKLEWGALYIL-AKDDEGYLSKEAV 212 (236)
Q Consensus 149 kFE~iFsKya~~-~p-d~LT~~El~~m~~~nR-----~~~D~~GW~a~~~EW~~~y~L-~~~~dG~l~Kedi 212 (236)
+.-.+|.||+.. +. +.||..|+..+++.+- ...++. ||.-++.- =.|.||.++=++.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~-------~~~~ll~~~D~d~DG~I~f~EF 74 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPG-------VLDRMMKKLDLNSDGQLDFQEF 74 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHH-------HHHHHHHHcCCCCCCcCcHHHH
Confidence 456789998754 42 3799999999999872 233332 33333322 2467888876554
No 41
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=50.31 E-value=18 Score=27.23 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=38.4
Q ss_pred hHHHHhhcCC--CCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhcc
Q 042070 151 ENIFSKYART--VPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRR 214 (236)
Q Consensus 151 E~iFsKya~~--~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~ 214 (236)
-.+|.|||.. ..+.||..||..++..+- .++.-=....-||.-++... .+.+|.++-++.-.
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~--g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~ 75 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKEL--PNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLV 75 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHh--hHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence 3579999966 357999999999997421 11100001144566555554 25688998777543
No 42
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=43.54 E-value=24 Score=25.78 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=23.4
Q ss_pred hhHHHHhhcCCCCCCCCHHHHHHHHH-hccc
Q 042070 150 FENIFSKYARTVPDKLTRAEIWHMTQ-SSRN 179 (236)
Q Consensus 150 FE~iFsKya~~~pd~LT~~El~~m~~-~nR~ 179 (236)
.++||.+|+. ....||..++.+-|+ .|++
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~ 31 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGE 31 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhcc
Confidence 4789999988 558999999999885 5665
No 43
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=42.75 E-value=18 Score=30.55 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCC---------Cccceeeccccc-------cccCCCCccccccccccccchhHHHH
Q 042070 92 PIASFVFSFLVHMAMSYATSPTWLPS---------PFFPIYVQNIHK-------AKHGSDTGTYDTEGRYVPVNFENIFS 155 (236)
Q Consensus 92 ~~~s~~aa~~Ih~~lSy~T~~sw~Pd---------P~f~Iyi~nIHk-------~kHGSDSg~YD~eGRFvP~kFE~iFs 155 (236)
++.+++..++|-+.+.|-|+--|+|- |+-+..-.++.- ...|--|..||-+++..
T Consensus 4 lly~~~~~~~i~~t~lf~~R~r~~~~~~~~~~~~~~~~~~~y~~l~~~~sF~~D~eaGLsSs~FDl~~Ni~--------- 74 (128)
T PF09435_consen 4 LLYSLTFFVLIIGTLLFFTRHRWLPLLPRYRSRLLRIRSYFYSRLPLNSSFEDDIEAGLSSSNFDLSSNIN--------- 74 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhccccccccccCCCCCCHHHHHHccccccccChhhccc---------
Confidence 34444454555555668888888873 111112222221 23456666666555431
Q ss_pred hhcCCCCCCCC---HHHHHHHHHhcccccCc
Q 042070 156 KYARTVPDKLT---RAEIWHMTQSSRNAFDI 183 (236)
Q Consensus 156 Kya~~~pd~LT---~~El~~m~~~nR~~~D~ 183 (236)
+.+...+|. ..||.+.++.+++-+|=
T Consensus 75 --~~D~R~GLD~~ak~EI~~IM~~~~v~FDe 103 (128)
T PF09435_consen 75 --SGDSRAGLDDAAKREIRRIMKRRRVNFDE 103 (128)
T ss_pred --CCCcccCcCHHHHHHHHHHHHHcCCCHHH
Confidence 333334576 69999999999988773
No 44
>PF15192 TMEM213: TMEM213 family
Probab=40.77 E-value=23 Score=27.70 Aligned_cols=18 Identities=33% Similarity=1.007 Sum_probs=14.9
Q ss_pred ccCcchhHHHHHhHHHHH
Q 042070 180 AFDIFGWIASKLEWGALY 197 (236)
Q Consensus 180 ~~D~~GW~a~~~EW~~~y 197 (236)
-.|=.||+|+.+.|.+.|
T Consensus 41 gvDeyGWIAAAVGWSLwF 58 (82)
T PF15192_consen 41 GVDEYGWIAAAVGWSLWF 58 (82)
T ss_pred CCchhhHHHHHHhHHHHH
Confidence 468999999999998543
No 45
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=39.94 E-value=82 Score=27.64 Aligned_cols=126 Identities=15% Similarity=0.108 Sum_probs=77.0
Q ss_pred ccccCC-CCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCC-----CC--CCCccceeeccccccccCCCCc
Q 042070 66 AFFDQD-GDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPT-----WL--PSPFFPIYVQNIHKAKHGSDTG 137 (236)
Q Consensus 66 aFFDrD-~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~s-----w~--PdP~f~Iyi~nIHk~kHGSDSg 137 (236)
.-+|++ ++|.|..-|=+.=. ......++--||....--.+... |+ ++-+.|. ++
T Consensus 40 ~kl~~~~~~g~lt~eef~~i~-----~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~------------~~- 101 (187)
T KOG0034|consen 40 KKLDRNNGDGYLTKEEFLSIP-----ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK------------AS- 101 (187)
T ss_pred HHhccccccCccCHHHHHHHH-----HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC------------cc-
Confidence 457888 88998887765443 44455556666666553222221 11 1111111 00
Q ss_pred cccccccccccchhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh---cCCCCccchhhhcc
Q 042070 138 TYDTEGRYVPVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA---KDDEGYLSKEAVRR 214 (236)
Q Consensus 138 ~YD~eGRFvP~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~---~~~dG~l~KediR~ 214 (236)
.-+|-+=.|.-|+....+.++-.|+.+|++.-....+-- .....+=.+-..+. +|+||.++.|+-+.
T Consensus 102 --------~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~--~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~ 171 (187)
T KOG0034|consen 102 --------KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM--SDEQLEDIVDKTFEEADTDGDGKISFEEFCK 171 (187)
T ss_pred --------HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 005666689999999878899999998888766544442 33444444434443 58999999999887
Q ss_pred ccccc
Q 042070 215 CFDGS 219 (236)
Q Consensus 215 vYDGS 219 (236)
++-.+
T Consensus 172 ~v~~~ 176 (187)
T KOG0034|consen 172 VVEKQ 176 (187)
T ss_pred HHHcC
Confidence 76544
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=37.56 E-value=54 Score=34.09 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=44.7
Q ss_pred hhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhccccccc
Q 042070 150 FENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRRCFDGS 219 (236)
Q Consensus 150 FE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~vYDGS 219 (236)
.+++|+.++.+..+.+++.|+..|+....+. + ..-|..-++.+. .|.+|+++.++++.+.-.+
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~-~------seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNL-V------AANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccC-C------CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 4678888988888899999999998854321 1 122344444444 4678999999999887654
No 47
>TIGR03641 cas1_HMARI CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.
Probab=36.51 E-value=34 Score=31.86 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=55.8
Q ss_pred ccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccccccccc
Q 042070 66 AFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTYDTEGRY 145 (236)
Q Consensus 66 aFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~YD~eGRF 145 (236)
.|-=|+.- .|.|-++-+-..|++++.+.+...++..+| || ||.-+|..+.|.-|=+||-.=-|
T Consensus 170 ~F~gR~rr---p~~DpvNa~LsygY~iL~~~i~~al~~~GL----------dP----~iG~lH~~~~gr~sLa~DL~E~f 232 (322)
T TIGR03641 170 RFEKRTRR---PPKNELNALISFGNSLLYTTVLSEIYKTHL----------NP----TISYLHEPSERRFSLALDIAEIF 232 (322)
T ss_pred cCCCCCCC---CcCCHHHHHHHHHHHHHHHHHHHHHHHcCC----------Cc----ceeeccCCCCCCccHHHHHHHHh
Confidence 34446554 479999999999999999999999999988 33 67779999999999999977677
Q ss_pred cccchhH
Q 042070 146 VPVNFEN 152 (236)
Q Consensus 146 vP~kFE~ 152 (236)
.|.--+.
T Consensus 233 Rp~~vD~ 239 (322)
T TIGR03641 233 KPIIVDR 239 (322)
T ss_pred hHHHHHH
Confidence 6654443
No 48
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=36.13 E-value=47 Score=30.61 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=61.0
Q ss_pred cccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCcccccccc
Q 042070 65 AAFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTYDTEGR 144 (236)
Q Consensus 65 vaFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~YD~eGR 144 (236)
..||=|..-+ |.|.++-+-..|+.++.+.++..++..+| || ||.-+|....|.-|=+||-.=-
T Consensus 174 ~~f~~R~~rp---~~DpvNa~LsygY~iL~~~v~~ai~~~GL----------dP----~iG~lH~~~~~~~sLa~DL~E~ 236 (323)
T TIGR00287 174 FGFNGRSKRP---PKDPFNALLSYGYSLLYSNVLTAIYIAGL----------DP----YIGFLHTDRSGRPSLVLDLMEE 236 (323)
T ss_pred CcCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHcCC----------Cc----ceeeeccCCCCCchHHHHHHHH
Confidence 5688886543 89999999999999999999999999988 33 6666899999999999998777
Q ss_pred ccccchhH-HHHhh
Q 042070 145 YVPVNFEN-IFSKY 157 (236)
Q Consensus 145 FvP~kFE~-iFsKy 157 (236)
|.|.--+. +|+-.
T Consensus 237 fRp~iVD~~v~~l~ 250 (323)
T TIGR00287 237 FRPQIVDRLVFSLI 250 (323)
T ss_pred hhHHHHHHHHHHHH
Confidence 77755443 34443
No 49
>PF01328 Peroxidase_2: Peroxidase, family 2; InterPro: IPR000028 Chloroperoxidase (CPO), also known as Heme haloperoxidase, is a ~250 residue heme-containing glycoprotein that is secreted by various fungi. Chloroperoxidase was first identified in Caldariomyces fumago where it catalyzes the hydrogen peroxide-dependent chlorination of cyclopentanedione during the biosynthesis of the antibiotic caldarioymcin. Additionally, heme haloperoxidase catalyzes the iodination and bromination of a wide range of substrates. Besides performing H2O2-dependent halogenation reactions, the enzyme catalyzes dehydrogenation reactions. Chloroperoxidase also functions as a catalase, facilitating the decomposition of hydrogen peroxide to oxygen and water. Furthermore, chloroperoxidase catalyzes P450-like oxygen insertion reactions. The capability of chloroperoxidase to perform these diverse reactions makes it one of the most versatile of all known heme proteins [, ]. Despite functional similarities with other heme enzymes, chloroperoxidase folds into a novel tertiary structure dominated by eight helical segments []. Structurally, chloroperoxidase is unique, but it shares features with both peroxidases and P450 enzymes. As in cytochrome P450 enzymes, the proximal heme ligand is a cysteine, but similar to peroxidases, the distal side of the heme is polar. However, unlike other peroxidases, the normally conserved distal arginine is lacking and the catalytic acid base is a glutamic acid and not a histidine [].; GO: 0004601 peroxidase activity; PDB: 2J5M_A 2J19_A 2CIW_A 2CJ0_A 2CIV_A 2CPO_A 1CPO_A 2CJ2_A 2J18_A 2CIZ_A ....
Probab=35.76 E-value=92 Score=29.59 Aligned_cols=150 Identities=17% Similarity=0.275 Sum_probs=65.3
Q ss_pred CCCChhccccccccCCCCce-eccchhhhHHHhhcchHHHHHHHHHHHH-hhc-CCCCCCCCCCCCccceeecccccccc
Q 042070 56 NNMSVLQQHAAFFDQDGDGI-IYPWETFRGFRLIGFNPIASFVFSFLVH-MAM-SYATSPTWLPSPFFPIYVQNIHKAKH 132 (236)
Q Consensus 56 ~~~TvLQqHvaFFDrD~DGi-I~P~DTy~Gfr~LGf~~~~s~~aa~~Ih-~~l-Sy~T~~sw~PdP~f~Iyi~nIHk~kH 132 (236)
.++.+|=-| .|-=| ||+ |...+...|+.+ |||+-.++++.++-. +.+ .|.|.+.+.. ..|.+ ..+ .+|
T Consensus 51 PgLNtLANH-GyLPr--nG~~It~~~l~~al~~-~~n~~~~~~~~~l~~a~~~~~~~~~~~~~~-~~f~L--~dL--~~H 121 (317)
T PF01328_consen 51 PGLNTLANH-GYLPR--NGRNITVEQLINALQE-GYNLSPDLLALALGQAFLLTDYSTGGDPGA-TTFNL--DDL--NRH 121 (317)
T ss_dssp HHHHHHHHT-TSS-T--T-EEE-HHHHHHHHHH-HH-B-HHHHHHHHHHHHHHHHHHHSS--TT-SEEES--GGG--G-T
T ss_pred ccHHHHHhc-CccCC--CCccccHHHHHHHHHH-HhCCChHHHHHHHHHHHhhhcccccCcccC-ccccC--CCc--CCC
Confidence 345556555 45544 465 788888888875 455544422222211 111 1333333322 22333 222 344
Q ss_pred C--------CCCccccccc---------cccccchhHHHHhhcCCCCCCCCHHHHHHHHHh---cccccCcc---h---h
Q 042070 133 G--------SDTGTYDTEG---------RYVPVNFENIFSKYARTVPDKLTRAEIWHMTQS---SRNAFDIF---G---W 186 (236)
Q Consensus 133 G--------SDSg~YD~eG---------RFvP~kFE~iFsKya~~~pd~LT~~El~~m~~~---nR~~~D~~---G---W 186 (236)
+ |-.-.|...+ .|++.-|++..+-+ . .+..+|+..+-+.-+. ...+.+|- | -
T Consensus 122 n~iEHDaSLtR~D~y~g~~~s~~~~D~~~fn~tlf~~~l~~~-~-~~~~i~l~~~A~aR~aR~~~s~a~NP~f~~~~~~~ 199 (317)
T PF01328_consen 122 NIIEHDASLTRDDAYFGDNNSNDFGDNYSFNQTLFDQTLDYW-T-GPTHIDLDDAAKARKARFRESKATNPNFSFSPFEF 199 (317)
T ss_dssp TTTS-SS-SSS--TTBT-SSTT-----SS--HHHHHHHHGGG-T-T-SEE-HHHHHHHHHHHHHHHHHHB-TTT----HH
T ss_pred CceecCcCCcccccccCcCcccccCCchhcCHHHHHHHHHhc-C-CCCeecHHHHHHHHHHHHHHHHHhCCCccchhhhh
Confidence 3 2223454443 34444555443332 2 2234777666422221 12234442 2 2
Q ss_pred HHHHHhHHHHHHhhcC----CCCc---cchhhhccccc
Q 042070 187 IASKLEWGALYILAKD----DEGY---LSKEAVRRCFD 217 (236)
Q Consensus 187 ~a~~~EW~~~y~L~~~----~dG~---l~KediR~vYD 217 (236)
+.+. |-.+.+.+..| ++|. ++||-||-.|-
T Consensus 200 ~~s~-E~Al~l~~fgd~~~~~~g~~~~~~~d~vr~fF~ 236 (317)
T PF01328_consen 200 IFSY-EAALYLSVFGDGNSPDNGENPTAPKDWVRSFFE 236 (317)
T ss_dssp HHHH-HHHHHHHHHB-TTSTTTTTS--EEHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHcCCCCCCCCCCCCccHHHHHHHHh
Confidence 3444 88888887776 4566 99999998773
No 50
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=33.10 E-value=44 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=23.2
Q ss_pred chhHHHHhhc-CCCCC-CCCHHHHHHHHHh
Q 042070 149 NFENIFSKYA-RTVPD-KLTRAEIWHMTQS 176 (236)
Q Consensus 149 kFE~iFsKya-~~~pd-~LT~~El~~m~~~ 176 (236)
.+-++|.+|+ ++..+ .|+..|+..|++.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 4567899998 67766 4999999999987
No 51
>PF12437 GSIII_N: Glutamine synthetase type III N terminal ; InterPro: IPR022147 This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. The family is found in association with PF00120 from PFAM. This family is the N-terminal region of glutamine synthetase type III which is one of the enzymes responsible for generation of glutamine through conversion glutamate to glutamine by the incorporation of ammonia (NH3). ; GO: 0004356 glutamate-ammonia ligase activity; PDB: 3O6X_D.
Probab=30.64 E-value=17 Score=31.88 Aligned_cols=24 Identities=42% Similarity=0.797 Sum_probs=13.6
Q ss_pred hccccccccCCCCceeccchhhhHHH
Q 042070 61 LQQHAAFFDQDGDGIIYPWETFRGFR 86 (236)
Q Consensus 61 LQqHvaFFDrD~DGiI~P~DTy~Gfr 86 (236)
=++|-+|++.|+|| .|.+.|.|=.
T Consensus 74 AeKHdsF~~~~~~g--~~i~~FsGk~ 97 (164)
T PF12437_consen 74 AEKHDSFISPDGDG--KPIEEFSGKE 97 (164)
T ss_dssp ---EEE-EEE-TTS--SEEE---GGG
T ss_pred hhhhhheeeeCCCC--CEEEEEChHH
Confidence 38999999999999 4888888754
No 52
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=29.47 E-value=34 Score=24.97 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.8
Q ss_pred cchhHHHHhhcC
Q 042070 148 VNFENIFSKYAR 159 (236)
Q Consensus 148 ~kFE~iFsKya~ 159 (236)
..||.||+||.+
T Consensus 16 ~~~e~I~~KY~~ 27 (58)
T PF10384_consen 16 SRWESIIEKYGQ 27 (58)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhcC
Confidence 478999999998
No 53
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.62 E-value=95 Score=29.95 Aligned_cols=60 Identities=25% Similarity=0.201 Sum_probs=41.6
Q ss_pred hHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHH-HHHHhhcCCCCccchhhhccccc
Q 042070 151 ENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWG-ALYILAKDDEGYLSKEAVRRCFD 217 (236)
Q Consensus 151 E~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~-~~y~L~~~~dG~l~KediR~vYD 217 (236)
|..|+-|+++..++|+..||..-+ =|-+--.|..|-. ++|.-=.|+||+|+||.|-.=||
T Consensus 244 e~F~~~~DknkDG~L~~dEl~~WI-------~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d 304 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDELLDWI-------LPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYD 304 (325)
T ss_pred HHHHHHhhcCCCCccCHHHHhccc-------CCCCccHHHHHHHHHhhhhccCccccccHHHHhhCcc
Confidence 456777888888899999997322 2444455666654 33333368999999999987665
No 54
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=28.52 E-value=59 Score=24.34 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=42.4
Q ss_pred cchhHHHHhhcC-CC-CCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHHHhh-cCCCCccchhhhcccc-ccchh
Q 042070 148 VNFENIFSKYAR-TV-PDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALYILA-KDDEGYLSKEAVRRCF-DGSLF 221 (236)
Q Consensus 148 ~kFE~iFsKya~-~~-pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y~L~-~~~dG~l~KediR~vY-DGSlF 221 (236)
..+-++|..|++ ++ .+.||..|+..+++.+. .+..|--...-|+..++..+ .+.+|.++-++...+. ..|||
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~--g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKEL--SEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHh--HHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 356788999997 65 58999999999987521 01111111122444444333 3568899887765433 33444
No 55
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=27.21 E-value=87 Score=23.47 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=26.7
Q ss_pred ccccchhHHHHhhcCCCCCCCCHHHHHHHHHhcc
Q 042070 145 YVPVNFENIFSKYARTVPDKLTRAEIWHMTQSSR 178 (236)
Q Consensus 145 FvP~kFE~iFsKya~~~pd~LT~~El~~m~~~nR 178 (236)
..++..++||...+....+.+++.|.+.|+....
T Consensus 48 ~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 48 KNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3457788899988888878899999988877543
No 56
>PF10574 UPF0552: Uncharacterised protein family UPF0552; InterPro: IPR018889 This family of proteins has no known function.
Probab=27.21 E-value=50 Score=30.28 Aligned_cols=53 Identities=25% Similarity=0.586 Sum_probs=41.3
Q ss_pred CCCccceee--ccccccccCCCCccccccccccccchhH--------HHHhh---cCCCCCCCCHHHHHHHHH
Q 042070 116 PSPFFPIYV--QNIHKAKHGSDTGTYDTEGRYVPVNFEN--------IFSKY---ARTVPDKLTRAEIWHMTQ 175 (236)
Q Consensus 116 PdP~f~Iyi--~nIHk~kHGSDSg~YD~eGRFvP~kFE~--------iFsKy---a~~~pd~LT~~El~~m~~ 175 (236)
|.-|+.+|| .+||+.+ ||.+|.=+|.+|.. +-|-| |++..|.||..+|..++.
T Consensus 56 k~Ry~vl~i~~~~~hrR~-------fd~~G~EIepnfs~T~kVntGyL~SsykveAkg~tDrls~~~L~~~V~ 121 (224)
T PF10574_consen 56 KERYYVLYIRPSRIHRRK-------FDAKGNEIEPNFSDTTKVNTGYLNSSYKVEAKGDTDRLSPEQLKALVN 121 (224)
T ss_pred ceEEEEEEEeechhhhhc-------ccCCCcCcCCCccceeeeeecccCcccEEEecCCccccCHHHHHHHhC
Confidence 455665665 5899987 89999999999875 33334 777889999999999984
No 57
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=26.59 E-value=91 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=13.1
Q ss_pred cccccchhHHHHhh-cCCCCCCCCHHHHHHHHH
Q 042070 144 RYVPVNFENIFSKY-ARTVPDKLTRAEIWHMTQ 175 (236)
Q Consensus 144 RFvP~kFE~iFsKy-a~~~pd~LT~~El~~m~~ 175 (236)
....+.|.++++++ .-+ ..+|..|+.+|++
T Consensus 28 ~Is~~EL~~~l~~~~~lg--~k~t~~ev~~m~~ 58 (88)
T cd05029 28 TLSKKELKELIQKELTIG--SKLQDAEIAKLME 58 (88)
T ss_pred EECHHHHHHHHHHHHhcC--CCCCHHHHHHHHH
Confidence 44444555555442 111 2345555555554
No 58
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=26.42 E-value=22 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=0.0
Q ss_pred cccccccCCCCcccc---cccccc--ccchhHHHHhhcCC
Q 042070 126 NIHKAKHGSDTGTYD---TEGRYV--PVNFENIFSKYART 160 (236)
Q Consensus 126 nIHk~kHGSDSg~YD---~eGRFv--P~kFE~iFsKya~~ 160 (236)
.||+.+--|+.++.+ +|.||. -++|+.|+++|-..
T Consensus 2 ~~sp~~~sp~p~~~~~p~~e~kY~eI~eeFD~l~q~y~~~ 41 (64)
T PF12347_consen 2 KESPGCDSPEPDIEPSPRTENKYREINEEFDKLHQRYCLS 41 (64)
T ss_dssp ----------------------------------------
T ss_pred CcCCCCCCCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Confidence 477888888888777 677765 46899999998643
No 59
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=26.31 E-value=30 Score=30.53 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=27.2
Q ss_pred ccccccccCCCCceeccchhhhHHHhhcchH
Q 042070 62 QQHAAFFDQDGDGIIYPWETFRGFRLIGFNP 92 (236)
Q Consensus 62 QqHvaFFDrD~DGiI~P~DTy~Gfr~LGf~~ 92 (236)
+---..||.|++|-|.=-|-..+.|+|||++
T Consensus 36 ~e~f~lfd~~~~g~iD~~EL~vAmralGFE~ 66 (172)
T KOG0028|consen 36 KEAFELFDPDMAGKIDVEELKVAMRALGFEP 66 (172)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCc
Confidence 3346789999999999999999999999994
No 60
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=25.87 E-value=88 Score=23.84 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=26.0
Q ss_pred cccchhHHHHhhcCCCCCCCCHHHHHHHHHh
Q 042070 146 VPVNFENIFSKYARTVPDKLTRAEIWHMTQS 176 (236)
Q Consensus 146 vP~kFE~iFsKya~~~pd~LT~~El~~m~~~ 176 (236)
.+...++|+...+.++.+.+++.|.++|+..
T Consensus 50 ~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 50 DPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4677889999988888789999999988765
No 61
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=25.50 E-value=27 Score=26.16 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=1.0
Q ss_pred chhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCC
Q 042070 79 WETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLP 116 (236)
Q Consensus 79 ~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~P 116 (236)
-||+.||-+||+.-.++++.-++.=++++|.+.-...|
T Consensus 22 P~s~gg~f~Ls~kdWl~Lvp~~~~va~igYlayk~f~p 59 (64)
T PF10660_consen 22 PDSFGGFFKLSVKDWLALVPFAAAVAGIGYLAYKPFCP 59 (64)
T ss_dssp ----------------------------------CC--
T ss_pred cccccccccccHHHHHHHHhHHHHHHHHHHHhheeecc
Confidence 48999999999999988887777778888887655444
No 62
>TIGR03638 cas1_ECOLI CRISPR-associated endonuclease Cas1, ECOLI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.
Probab=25.23 E-value=79 Score=28.80 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=48.9
Q ss_pred cccccCCCCc-eeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccccccc
Q 042070 65 AAFFDQDGDG-IIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTYDTEG 143 (236)
Q Consensus 65 vaFFDrD~DG-iI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~YD~eG 143 (236)
..||=|+... -..|.|-++..-..|+.++.+.++..++..+| || ||.-+|..+++ |=+||--=
T Consensus 154 ~~f~gR~~rp~~~~~~DpvNa~LsyGYtlL~~~i~~ai~~~GL----------dP----~lG~lH~~~~~--sLv~Dl~E 217 (269)
T TIGR03638 154 VPWKGRRYDPGDWEAGDPVNRALSAANACLYGICHAAILAAGY----------SP----ALGFIHTGKPL--SFVYDIAD 217 (269)
T ss_pred CCCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC----------CC----cceeeeCCCCC--chhhhhHh
Confidence 4566565442 23479999999999999999999999999988 44 55557888763 66777444
Q ss_pred cccc
Q 042070 144 RYVP 147 (236)
Q Consensus 144 RFvP 147 (236)
-|.|
T Consensus 218 ~fR~ 221 (269)
T TIGR03638 218 LYKA 221 (269)
T ss_pred hhhh
Confidence 4443
No 63
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=24.19 E-value=1.7e+02 Score=29.47 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred cccCCCCceeccchhhhHHHhhcch-HHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccccccccc
Q 042070 67 FFDQDGDGIIYPWETFRGFRLIGFN-PIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTYDTEGRY 145 (236)
Q Consensus 67 FFDrD~DGiI~P~DTy~Gfr~LGf~-~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~YD~eGRF 145 (236)
|||.++||-|.--+-.+||-+|+-. +-....-.++=-+-- |.+||.
T Consensus 22 ~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~---------------------------------~~dg~v 68 (463)
T KOG0036|consen 22 ELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDA---------------------------------NRDGRV 68 (463)
T ss_pred HhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhccc---------------------------------CcCCcc
Q ss_pred cccchh-----------HHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHH-------HHHHhhcCCCCcc
Q 042070 146 VPVNFE-----------NIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWG-------ALYILAKDDEGYL 207 (236)
Q Consensus 146 vP~kFE-----------~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~-------~~y~L~~~~dG~l 207 (236)
+=+.|. +||..-+..+.+.+...|||+-++.-....|--=-.. ++||. +.+.=.+|..-.-
T Consensus 69 Dy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k-~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 69 DYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAK-FFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred cHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHH-HHHHhccCCCeeeccHHHHhhhhcC
Q ss_pred chhhhccccc
Q 042070 208 SKEAVRRCFD 217 (236)
Q Consensus 208 ~KediR~vYD 217 (236)
.-++|+.+||
T Consensus 148 p~s~i~di~~ 157 (463)
T KOG0036|consen 148 PESDLEDIYD 157 (463)
T ss_pred ChhHHHHHHH
No 64
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=24.16 E-value=99 Score=23.42 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=26.0
Q ss_pred ccchhHHHHhhcCCCCCCCCHHHHHHHHHhc
Q 042070 147 PVNFENIFSKYARTVPDKLTRAEIWHMTQSS 177 (236)
Q Consensus 147 P~kFE~iFsKya~~~pd~LT~~El~~m~~~n 177 (236)
+...++|++..+.++.+.+++.|.+.|+..-
T Consensus 52 ~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 52 PMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 4568889999988887899999999988764
No 65
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=22.54 E-value=1.3e+02 Score=29.39 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=29.4
Q ss_pred hhHHHHhhcCCCCCCCCHHHHHHHHHhcccccCcchhHHHHHhHHHHH-HhhcCCCCccchhhhcccc
Q 042070 150 FENIFSKYARTVPDKLTRAEIWHMTQSSRNAFDIFGWIASKLEWGALY-ILAKDDEGYLSKEAVRRCF 216 (236)
Q Consensus 150 FE~iFsKya~~~pd~LT~~El~~m~~~nR~~~D~~GW~a~~~EW~~~y-~L~~~~dG~l~KediR~vY 216 (236)
.+.+|.-|+++..+.+|..|+.. .+ ..+ .+-.|.||.+++++++.+.
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~------------------~~--~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG------------------SD--AVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH------------------HH--HHHHHhCCCCCCCCcHHHHHHHH
Confidence 44566667777767777777631 11 122 2334688999999887754
No 66
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=22.45 E-value=1.2e+02 Score=23.22 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=22.0
Q ss_pred cchhHHHHhhcCCCCCCCCHHHHHHHHHh
Q 042070 148 VNFENIFSKYARTVPDKLTRAEIWHMTQS 176 (236)
Q Consensus 148 ~kFE~iFsKya~~~pd~LT~~El~~m~~~ 176 (236)
...++|+...+.++.+.+++.|.+.|+.+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45777887777777778888888877765
No 67
>TIGR03640 cas1_DVULG CRISPR-associated endonuclease Cas1, DVULG subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.
Probab=21.97 E-value=85 Score=29.40 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=54.0
Q ss_pred ccccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccccccccc
Q 042070 66 AFFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTYDTEGRY 145 (236)
Q Consensus 66 aFFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~YD~eGRF 145 (236)
.|.-|... .|.|-++.+-..|+.++.+.+...++..+| || ||.-+|....|.-|=+||-.=-|
T Consensus 187 ~F~~R~rr---pp~DpvNalLsygYtlL~~~v~~ai~~~GL----------dP----~iG~lH~~~~~r~sLa~DL~E~F 249 (340)
T TIGR03640 187 RFDGRSRR---PPLDPVNALLSFLYTLLTHDCRSALEGVGL----------DP----AVGFLHRDRPGRPSLALDLMEEF 249 (340)
T ss_pred ccCCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHcCC----------Cc----cceeccCCCCCCccHHHHHHHHh
Confidence 44445444 489999999999999999999999999988 34 66668999999999999977677
Q ss_pred cccc
Q 042070 146 VPVN 149 (236)
Q Consensus 146 vP~k 149 (236)
.|.-
T Consensus 250 Rp~i 253 (340)
T TIGR03640 250 RAVL 253 (340)
T ss_pred hHHH
Confidence 6643
No 68
>TIGR03639 cas1_NMENI CRISPR-associated endonuclease Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Probab=21.92 E-value=2.6e+02 Score=25.62 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=65.4
Q ss_pred ccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCccccccccccccchhH-HHH
Q 042070 77 YPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTYDTEGRYVPVNFEN-IFS 155 (236)
Q Consensus 77 ~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~YD~eGRFvP~kFE~-iFs 155 (236)
-|.|-++.+-..|++++.+.+...++..+| || ||.-+|....|.-|=+||-.=-|.|- -+. +|+
T Consensus 167 p~~DpvNa~LsygY~iL~~~v~~al~~~GL----------dP----~iGflH~~~~~r~sLa~DLmE~FRpi-VD~~V~~ 231 (278)
T TIGR03639 167 DGEDPINAALNYGYAILRSAVARALVKSGL----------LP----RLGIFHKSEYNPFNLADDLMEPFRPL-VDYLVYE 231 (278)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHcCC----------Cc----ccccccCCCCCCcchhHhhhhhhHHH-HHHHHHH
Confidence 678999999999999999999999999888 33 67779999999999999998888884 566 466
Q ss_pred hhcCCCCCCCCHHHHHHHHH
Q 042070 156 KYARTVPDKLTRAEIWHMTQ 175 (236)
Q Consensus 156 Kya~~~pd~LT~~El~~m~~ 175 (236)
-.....-..|+..-..++++
T Consensus 232 ~~~~~~~~~l~~e~k~~l~~ 251 (278)
T TIGR03639 232 LLIEEFNDDLTKEIKRKLFS 251 (278)
T ss_pred hcccccccccCHHHHHHHHH
Confidence 44433324677655555554
No 69
>PF01867 Cas_Cas1: CRISPR associated protein Cas1; InterPro: IPR002729 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents Cas1, which is a metal-dependent DNA-specific endonuclease []. Cas1 may play a role in the recognition, cleavage, and/or integration of foreign nucleic acids into CRISPRs.; PDB: 2YZS_A 3LFX_D 3PV9_E 3NKE_C 3NKD_A 3GOD_D.
Probab=21.54 E-value=64 Score=28.97 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=46.8
Q ss_pred cccCCCCceeccchhhhHHHhhcchHHHHHHHHHHHHhhcCCCCCCCCCCCCccceeeccccccccCCCCcccccccccc
Q 042070 67 FFDQDGDGIIYPWETFRGFRLIGFNPIASFVFSFLVHMAMSYATSPTWLPSPFFPIYVQNIHKAKHGSDTGTYDTEGRYV 146 (236)
Q Consensus 67 FFDrD~DGiI~P~DTy~Gfr~LGf~~~~s~~aa~~Ih~~lSy~T~~sw~PdP~f~Iyi~nIHk~kHGSDSg~YD~eGRFv 146 (236)
|.-|+..+ |.|-++.+-..|+.++.+.+...++-.+| || ||.-+|....|..|=+||-.=-|.
T Consensus 174 F~~R~~rp---~~DpvNa~LsygY~lL~~~~~~~l~~~GL----------dp----~~G~lH~~~~~~~sL~~DL~E~fR 236 (282)
T PF01867_consen 174 FNGRSRRP---PKDPVNALLSYGYALLYSEVARALVAAGL----------DP----YIGFLHAPRYGRPSLVYDLMEPFR 236 (282)
T ss_dssp SSS-SSSS----SSHHHHHHHHHHHHHHHHHHHHHHTTTS-----------T----T--SSS-TCTSTTHHHHHHHHHHH
T ss_pred ccCcCcCC---CCChHHHHHHHHHHHHHHHHHHHHHhcCC----------CC----ccceeeCCCCCCcchHHHhHHHHh
Confidence 44444443 68888999999999999999999998888 44 566689999999999999555554
Q ss_pred cc
Q 042070 147 PV 148 (236)
Q Consensus 147 P~ 148 (236)
|.
T Consensus 237 p~ 238 (282)
T PF01867_consen 237 PP 238 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 70
>PF12860 PAS_7: PAS fold
Probab=20.81 E-value=1.1e+02 Score=22.96 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=36.3
Q ss_pred ccccccccc--ccchhHHHHhhcCCCCCCCCHHHHHHHHHhcccc--cCcchhHHHHH
Q 042070 138 TYDTEGRYV--PVNFENIFSKYARTVPDKLTRAEIWHMTQSSRNA--FDIFGWIASKL 191 (236)
Q Consensus 138 ~YD~eGRFv--P~kFE~iFsKya~~~pd~LT~~El~~m~~~nR~~--~D~~GW~a~~~ 191 (236)
.||.+||.+ -++|.+||.--...-.-+.++.++.+....+... .++-.|+...+
T Consensus 10 v~D~~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 67 (115)
T PF12860_consen 10 VFDSDGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRL 67 (115)
T ss_pred EEcCCCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 689999876 4589999865443334578999999888665543 34445544444
No 71
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=20.39 E-value=91 Score=29.74 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=33.5
Q ss_pred CCCCccccc--cccccccchhHHHHhhcCCCCCCCCHHHHHHHHHhc
Q 042070 133 GSDTGTYDT--EGRYVPVNFENIFSKYARTVPDKLTRAEIWHMTQSS 177 (236)
Q Consensus 133 GSDSg~YD~--eGRFvP~kFE~iFsKya~~~pd~LT~~El~~m~~~n 177 (236)
|-|-|-+|. |-|-.-.+.-.||+|-+-.-..+||.+|+.+-+..+
T Consensus 84 gkdLggfDedaeprrsrrklmviFsKvDVNtDrkisAkEmqrwImek 130 (362)
T KOG4251|consen 84 GKDLGGFDEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEK 130 (362)
T ss_pred ccCCCCcccccchhHHHHHHHHHHhhcccCccccccHHHHHHHHHHH
Confidence 344444443 567777899999999887777799999998766554
No 72
>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]
Probab=20.35 E-value=88 Score=29.01 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=27.9
Q ss_pred CCceeccchhhhHHHhhcchHHHHHH----HHH-HHHhhcCCCCCCCCCCCCc
Q 042070 72 GDGIIYPWETFRGFRLIGFNPIASFV----FSF-LVHMAMSYATSPTWLPSPF 119 (236)
Q Consensus 72 ~DGiI~P~DTy~Gfr~LGf~~~~s~~----aa~-~Ih~~lSy~T~~sw~PdP~ 119 (236)
.||.||..|.- +|+=.-++|.+ ..+ .+.++.+|||+.+ +|.++
T Consensus 194 DnGsiy~pevL----DiteE~l~~~f~~~vs~va~~sL~~~ypt~as-v~h~~ 241 (245)
T KOG0815|consen 194 DNGSIYNPEVL----DITEEDLFSKFLSGVSNVASVSLAAGYPTLAS-VPHSF 241 (245)
T ss_pred cCCcccChhhc----CCcHHHHHHHHHHHHHHHHHHHHhcCCCcccc-cchhh
Confidence 48999998763 55443343333 322 4567789999998 77665
Done!