BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042071
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 165/623 (26%), Positives = 266/623 (42%), Gaps = 85/623 (13%)
Query: 19 PPEAIESLFNQYSENG--IMTVDHLHRFLVEVQKERN-------PKKED-AQAIIDSMDD 68
P I+ +F Y MT +HL +F+ + Q++ P + D Q +ID +
Sbjct: 217 PRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEP 276
Query: 69 QLNLKHPHSSDQRKGLNLEAFFKYLLSEKNSPLCPSRGV-HQDMKAPLSHYFIYTGHNSY 127
+ QR L+ E +L +NS L + + H DM PL+HYFI + HN+Y
Sbjct: 277 S------GINAQRGQLSPEGMVWFLCGPENSVLAQDKLLLHHDMTQPLNHYFINSSHNTY 330
Query: 128 LTGNQLNSKCSAGPIKDALKRGLRGIELDLWPSSKKKDGVEVCHGGTLTAPVDLTTCLET 187
LT Q + SA + L G R +ELD W + + HG T+T + +E
Sbjct: 331 LTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMTTDIFFKEAIEA 390
Query: 188 IKNYAFDASEYPVVITFEDHL-PPHLQGEVAALLTRIFDKEILLPDDSECLKEFPSPESL 246
I AF S YP++++FE+H+ P Q ++A IF +L +E L++FP L
Sbjct: 391 IAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIFGDMLL----TEPLEKFP----L 442
Query: 247 KGKIIISTKPPEDKAKDKENELPKSTSCHVNFPPFMKMFNHTRKKVCGQKAKHQ-EYPRP 305
K + + + PED R K+ + K+Q P
Sbjct: 443 KPGVPLPS--PED----------------------------LRGKILIKNKKNQFSGPTS 472
Query: 306 SASSSADEAEWGEEVPNLKGI---VKTTNGSTNDKDYSDEEGSTNADGDSEKTQQN---- 358
S+ + EAE G P+ + + T + + +EE S N D + K Q+
Sbjct: 473 SSKDTGGEAE-GSSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGT 531
Query: 359 -VVEAPKYRHLISM-HAGKPKGGLKEWLKVEVDXXXXXXXXXXXXXXAVTKKYGQDIVRF 416
+E Y + S+ + +P + + + + K V +
Sbjct: 532 AGLEVTAYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVDY 591
Query: 417 TQSNVLRVYPKGLRIDSSNYNPLIAWSHGAQMVAFNMQGYGRPLWLMHGMFRANGGCGYV 476
+ + R+YPKG R+DSSNY P + W+ G QMVA N Q P+ +F NG GY+
Sbjct: 592 NKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYL 651
Query: 477 KKPEFLLEKTGLYRDLFDSEVNLPVKTTLKVTLYSGEGWDKEFHHTYFDACSPPDFYAKV 536
K EF+ + +++ V TTL +T+ SG+ + T Y +V
Sbjct: 652 LKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSERSVRT----------YVEV 701
Query: 537 GIAGVPGD-TSSMTDQTEPIKDSWVPAWNKE-FKFQ-LTVPELALLRIEIHERDDILQKD 593
+ G+PGD + P +S P W +E F F+ + +PELA LR+ + E + +
Sbjct: 702 ELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME-----EGN 756
Query: 594 DFGGQTCLPVSELRQGIRAVPLH 616
F G +P++ L G + LH
Sbjct: 757 KFLGHRIIPINALNSGYHHLCLH 779
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 8/220 (3%)
Query: 405 VTKKYGQDIVRFTQSNVLRVYPKGLRIDSSNYNPLIAWSHGAQMVAFNMQGYGRPLWLMH 464
+ ++ G VR S + R+YP G R DSSNY+P+ W+ G Q+VA N Q G + +
Sbjct: 397 LLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYL 456
Query: 465 GMFRANGGCGYVKKPEFLLEKTGLYRDLFDSEVNLPVKTTLKVTLYSGEGWDKEFHHTYF 524
G F+ NGGCGYV KP FL + + ++ L+V + SG+ K
Sbjct: 457 GCFQDNGGCGYVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPK----VNK 512
Query: 525 DACSPPDFYAKVGIAGVPGDTSSMTDQTEPIKDS-WVPAWNKEFKFQLTVPELALLRIEI 583
+ S D V I GV DT S QT I ++ + P W+ EF+F++TVP+LAL+R +
Sbjct: 513 NKNSIVDPKVIVEIHGVGRDTGSR--QTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV 570
Query: 584 HERDDILQKDDFGGQTCLPVSELRQGIRAVPLHDRKGNEY 623
+ D K+DF GQ+ +P + L+QG R V L + G+++
Sbjct: 571 EDYDSS-SKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQH 609
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 9/212 (4%)
Query: 36 MTVDHLHRFLVEVQKERNPKKEDAQAIIDSMDDQLNLKHPHSSDQRKGLNLEAFFKYLLS 95
++V+ L FL Q+E A ++I+ + ++ ++ + + F YLLS
Sbjct: 94 LSVERLVTFLQHQQREEEAGPALALSLIERYEPS------ETAKAQRQMTKDGFLMYLLS 147
Query: 96 -EKNSPLCPSRGVHQDMKAPLSHYFIYTGHNSYLTGNQLNSKCSAGPIKDALKRGLRGIE 154
+ N+ R V+QDM PLSHY + + HN+YL +QL S AL +G R +E
Sbjct: 148 ADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLE 207
Query: 155 LDLWPSSKKKDGVEVCHGGTLTAPVDLTTCLETIKNYAFDASEYPVVITFEDHLPPHLQG 214
LD W ++ + HG T T+ + L I++YAF AS YPV+++ E+H Q
Sbjct: 208 LDCWDGPNQEPIIY--HGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQR 265
Query: 215 EVAALLTRIFDKEILLPDDSECLKEFPSPESL 246
+A L I +L PSPE L
Sbjct: 266 VMARHLRAILGPILLDQPLDGVTTSLPSPEQL 297
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 8/220 (3%)
Query: 405 VTKKYGQDIVRFTQSNVLRVYPKGLRIDSSNYNPLIAWSHGAQMVAFNMQGYGRPLWLMH 464
+ ++ G VR S + R+YP G R DSSNY+P+ W+ G Q+VA N Q G + +
Sbjct: 399 LLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYL 458
Query: 465 GMFRANGGCGYVKKPEFLLEKTGLYRDLFDSEVNLPVKTTLKVTLYSGEGWDKEFHHTYF 524
G F+ NGGCGYV KP FL + + ++ L+V + SG+ K
Sbjct: 459 GCFQDNGGCGYVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPK----VNK 514
Query: 525 DACSPPDFYAKVGIAGVPGDTSSMTDQTEPIKDS-WVPAWNKEFKFQLTVPELALLRIEI 583
+ S D V I GV DT S QT I ++ + P W+ EF+F++TVP+LAL+R +
Sbjct: 515 NKNSIVDPKVIVEIHGVGRDTGSR--QTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV 572
Query: 584 HERDDILQKDDFGGQTCLPVSELRQGIRAVPLHDRKGNEY 623
+ D K+DF GQ+ +P + L+QG R V L + G+++
Sbjct: 573 EDYDSS-SKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQH 611
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 9/212 (4%)
Query: 36 MTVDHLHRFLVEVQKERNPKKEDAQAIIDSMDDQLNLKHPHSSDQRKGLNLEAFFKYLLS 95
++V+ L FL Q+E A ++I+ + ++ ++ + + F YLLS
Sbjct: 96 LSVERLVTFLQHQQREEEAGPALALSLIERYEPS------ETAKAQRQMTKDGFLMYLLS 149
Query: 96 -EKNSPLCPSRGVHQDMKAPLSHYFIYTGHNSYLTGNQLNSKCSAGPIKDALKRGLRGIE 154
+ N+ R V+QDM PLSHY + + HN+YL +QL S AL +G R +E
Sbjct: 150 ADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLE 209
Query: 155 LDLWPSSKKKDGVEVCHGGTLTAPVDLTTCLETIKNYAFDASEYPVVITFEDHLPPHLQG 214
LD W ++ + HG T T+ + L I++YAF AS YPV+++ E+H Q
Sbjct: 210 LDCWDGPNQEP--IIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQR 267
Query: 215 EVAALLTRIFDKEILLPDDSECLKEFPSPESL 246
+A L I +L PSPE L
Sbjct: 268 VMARHLRAILGPILLDQPLDGVTTSLPSPEQL 299
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 6/182 (3%)
Query: 80 QRKGLNLEAFFKYLLSEKNSPL-CPSRGVHQDMKAPLSHYFIYTGHNSYLTGNQLNSKCS 138
+R +++E F +YL E+N L + + DM PLS YFI + HN+YLT QL S
Sbjct: 288 ERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSS 347
Query: 139 AGPIKDALKRGLRGIELDLWPSSKKKDGVEVCHGGTLTAPVDLTTCLETIKNYAFDASEY 198
+ AL G R +ELD+W ++ + HG T+T V L LE I AF S Y
Sbjct: 348 VEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPY 407
Query: 199 PVVITFEDHL-PPHLQGEVAALLTRIFDKEILL-PDDSECLK---EFPSPESLKGKIIIS 253
PV+++FE+H+ Q ++A IF +L+ P D L PSP+ L G+I++
Sbjct: 408 PVILSFENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVK 467
Query: 254 TK 255
K
Sbjct: 468 NK 469
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 412 DIVRFTQSNVLRVYPKGLRIDSSNYNPLIAWSHGAQMVAFNMQGYGRPLWLMHGMFRANG 471
+ V + + + R+YPKG R+DSSNY P + W+ G Q+VA N Q + L G+F NG
Sbjct: 636 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 695
Query: 472 GCGYVKKPEFLLEKTGLYRDLFDSEVNLPVKTTLKVTLYSGEGWDKEFHHTYFDACSPPD 531
GY+ KPEF+ + + V+ V L+V + SG+ F +
Sbjct: 696 RSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQ----------FLSDRKVG 745
Query: 532 FYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKE-FKF-QLTVPELALLRIEIHERDDI 589
Y +V + G+P DT +S+ P W++E F F ++ +P LA LRI E
Sbjct: 746 IYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE---- 801
Query: 590 LQKDDFGGQTCLPVSELRQGIRAVPLHD 617
+ F G LPVS +R G V L +
Sbjct: 802 -EGGKFVGHRILPVSAIRSGYHYVCLRN 828
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 6/182 (3%)
Query: 80 QRKGLNLEAFFKYLLSEKNSPL-CPSRGVHQDMKAPLSHYFIYTGHNSYLTGNQLNSKCS 138
+R +++E F +YL E+N L + + DM PLS YFI + HN+YLT QL S
Sbjct: 286 ERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSS 345
Query: 139 AGPIKDALKRGLRGIELDLWPSSKKKDGVEVCHGGTLTAPVDLTTCLETIKNYAFDASEY 198
+ AL G R +ELD+W ++ + HG T+T V L LE I AF S Y
Sbjct: 346 VEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPY 405
Query: 199 PVVITFEDHL-PPHLQGEVAALLTRIFDKEILL-PDDSECLK---EFPSPESLKGKIIIS 253
PV+++FE+H+ Q ++A IF +L+ P D L PSP+ L G+I++
Sbjct: 406 PVILSFENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVK 465
Query: 254 TK 255
K
Sbjct: 466 NK 467
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 101/212 (47%), Gaps = 17/212 (8%)
Query: 408 KYGQDIVRFTQSNVLRVYPKGLRIDSSNYNPLIAWSHGAQMVAFNMQGYGRPLWLMHGMF 467
K + V + + + R+YPKG R+DSSNY P + W+ G Q+VA N Q + L G+F
Sbjct: 630 KSPMEFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVF 689
Query: 468 RANGGCGYVKKPEFLLEKTGLYRDLFDSEVNLPVKTTLKVTLYSGEGWDKEFHHTYFDAC 527
NG GY+ KPEF+ + + V+ V L+V + SG+ F +
Sbjct: 690 EYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQ----------FLSD 739
Query: 528 SPPDFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKE-FKF-QLTVPELALLRIEIHE 585
Y +V + G+P DT +S+ P W++E F F ++ +P LA LRI E
Sbjct: 740 RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799
Query: 586 RDDILQKDDFGGQTCLPVSELRQGIRAVPLHD 617
+ F G LPVS +R G V L +
Sbjct: 800 -----EGGKFVGHRILPVSAIRSGYHYVCLRN 826
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 20/211 (9%)
Query: 411 QDIVRFTQSNVLRVYPKGLRIDSSNYNPLIAWSHGAQMVAFNMQGYGRPLWLMHGMFRAN 470
+D V + + + R+YPKG R+DSSNY P I W+ G Q+VA N Q + + + G+F N
Sbjct: 558 EDFVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAMCVNLGVFEYN 617
Query: 471 GGCGYVKKPEFLLEKTGLYRDLFDSEVNLPVKTTLKVTLYSGEGW-DKEFHHTYFDACSP 529
G GY+ KPEF+ + + +S V+ V T+++ + S + DK+
Sbjct: 618 GCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQISS-------- 669
Query: 530 PDFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKEFKF---QLTVPELALLRIEIHER 586
Y +V + G+P DT +T+ I+++ + + E F ++ +P+LA++RI + E
Sbjct: 670 ---YVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE- 725
Query: 587 DDILQKDDFGGQTCLPVSELRQGIRAVPLHD 617
+ F G +P+ ++ G R VPL +
Sbjct: 726 ----ENGKFIGHRVMPLDGIKPGYRHVPLRN 752
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 131/272 (48%), Gaps = 29/272 (10%)
Query: 12 FHVGVSEPPEAIESLFNQYSEN-GIMTVDHLHRFLVEVQKERN------PKKEDAQ--AI 62
F++ + E E IE +F + S+N G +T FL ++Q+ + P DAQ A+
Sbjct: 221 FYLALLERSE-IEGIFKELSKNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDAQCEAL 279
Query: 63 IDSMDDQLNLKHPHSSDQRKG-LNLEAFFKYLLSEKNSPLCPSR--GVHQDMKAPLSHYF 119
I+ + +N K ++KG L E +L+ E+N+ L P + +MK L+ Y+
Sbjct: 280 INDYESAVNKK-----GKKKGQLTKEGLLYFLMCEENN-LTPMHRLDLGANMKLTLAAYY 333
Query: 120 IYTGHNSYLTGNQLNSKCSAGPIKDALKRGLRGIELDLWPSSKKKDGVEVC-HGGTLTAP 178
I + HN+YLTG+QL K S + L G R +ELD W KDG + HG T+
Sbjct: 334 INSSHNTYLTGHQLTGKSSVEIYRQVLLTGCRCLELDCWDG---KDGEPIITHGFTMCTE 390
Query: 179 VDLTTCLETIKNYAFDASEYPVVITFEDHLPPHLQGEVAALLTRIFDKEILL--PDDSEC 236
V + I AF S+YPV+++FE+H Q +A F E+LL P D
Sbjct: 391 VLFKDVVYAIAESAFKVSDYPVILSFENHCSVAQQKLLAQYCNEAFG-ELLLDKPIDGHP 449
Query: 237 LK---EFPSPESLKGKIIISTKPPEDKAKDKE 265
LK P+P L+ KI+I K D E
Sbjct: 450 LKPGVPLPTPYDLRKKILIKNKKMHKGTGDDE 481
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 20/211 (9%)
Query: 411 QDIVRFTQSNVLRVYPKGLRIDSSNYNPLIAWSHGAQMVAFNMQGYGRPLWLMHGMFRAN 470
+D V + + + R+YPKG R+DSSNY P I W+ G Q+VA N Q + + + G+F N
Sbjct: 558 EDFVDYNKKQLTRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDVAMCVNLGVFEYN 617
Query: 471 GGCGYVKKPEFLLEKTGLYRDLFDSEVNLPVKTTLKVTLYSGEGW-DKEFHHTYFDACSP 529
G GY+ KPEF+ + + +S V+ V T+++ + S + DK+
Sbjct: 618 GCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQISS-------- 669
Query: 530 PDFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKEFKF---QLTVPELALLRIEIHER 586
Y +V + G+P DT +T+ + ++ + + E F ++ +P+LA++RI ++E
Sbjct: 670 ---YVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNENAFVFKKVVLPDLAVVRIIVNE- 725
Query: 587 DDILQKDDFGGQTCLPVSELRQGIRAVPLHD 617
F G +P+ ++ G R +PL +
Sbjct: 726 ----DGGKFIGHRLMPLDGIKPGYRHIPLRN 752
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 119/250 (47%), Gaps = 21/250 (8%)
Query: 12 FHVGVSEPPEAIESLFNQYSEN-GIMTVDHLHRFLVEVQKERNPKKEDAQAIIDSMDDQL 70
F++ + E E IE +F + S+N G +T FL ++Q+ + K DS D L
Sbjct: 221 FYLSLLERSE-IEGIFKELSQNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDSQCDAL 279
Query: 71 NLKHPHSSDQRKG-----LNLEAFFKYLLSEKNSPLCPSR--GVHQDMKAPLSHYFIYTG 123
+ S+ +KG L E +L+ E+N+ L P + +MK L+ Y+I +
Sbjct: 280 -INEYESAVNKKGKKKGQLTKEGLLYFLMCEENN-LTPMHRLDLGANMKLSLAAYYINSS 337
Query: 124 HNSYLTGNQLNSKCSAGPIKDALKRGLRGIELDLWPSSKKKDGVEVC-HGGTLTAPVDLT 182
HN+YLTG+QL K S + L G R +ELD W KDG + HG T+ V
Sbjct: 338 HNTYLTGHQLTGKSSVEIYRQVLLTGCRCLELDCWDG---KDGEPIITHGFTMCTEVQFK 394
Query: 183 TCLETIKNYAFDASEYPVVITFEDHLPPHLQGEVAALLTRIFDKEILL--PDDSECLK-- 238
+ I AF SEYPV+++FE+H Q +A F E+LL P D LK
Sbjct: 395 DVVHAIAECAFKVSEYPVILSFENHCSVPQQKLLAQYCHEAFG-ELLLDNPIDGHPLKPG 453
Query: 239 -EFPSPESLK 247
P+P L+
Sbjct: 454 VPLPTPYDLR 463
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 505 LKVTLYSGEGWDKEFHHTYFDACSPPDFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWN 564
L+V + SG K+ F A P Y K+ + + QT+ IK + P WN
Sbjct: 23 LRVKVVSGIDLAKK---DIFGASDP---YVKLSLYVADENRELALVQTKTIKKTLNPKWN 76
Query: 565 KEFKFQLTVPELALLRIEIHERDDILQKDDFGGQTCLPVSEL 606
+EF F++ P L E+ + ++ L +DDF GQ +P+S L
Sbjct: 77 EEFYFRVN-PSNHRLLFEVFD-ENRLTRDDFLGQVDVPLSHL 116
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 531 DFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKEFKFQLTVPEL-ALLRIEIHERDDI 589
D Y K+ + +P S +T+ IK S P WN+ F+FQL + L +EI + D+
Sbjct: 194 DPYVKLKL--IPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDW-DL 250
Query: 590 LQKDDFGGQTCLPVSELRQG 609
++DF G +SEL++
Sbjct: 251 TSRNDFMGSLSFGISELQKA 270
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 505 LKVTLYSGEGWDKEFHHTYFDACSPPDFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWN 564
++V + +G G K+ D D Y +V + P + + QT+ IK S P WN
Sbjct: 22 VRVRVIAGIGLAKK------DILGASDPYVRVTLYD-PMNGVLTSVQTKTIKKSLNPKWN 74
Query: 565 KEFKFQLTVPELALLRIEIHERDDILQKDDFGGQTCLPVSEL 606
+E F++ P+ L E+ + ++ L +DDF GQ +P+ L
Sbjct: 75 EEILFRVH-PQQHRLLFEVFD-ENRLTRDDFLGQVDVPLYPL 114
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 531 DFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKEFKFQLTVPEL-ALLRIEIHERDDI 589
D Y K+ + +P S +T+ IK S P WN+ F+FQL + L +EI + D+
Sbjct: 53 DPYVKLKL--IPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW-DL 109
Query: 590 LQKDDFGGQTCLPVSELRQG 609
++DF G +SEL++
Sbjct: 110 TSRNDFMGSLSFGISELQKA 129
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 504 TLKVTLYSGEGWDKEFHHTYFDACSPPDFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAW 563
++V + +G G K+ D D Y +V + P + QT+ IK S P W
Sbjct: 9 VVRVKVIAGIGLAKK------DILGASDPYVRVTLYD-PMSGILTSVQTKTIKKSLNPKW 61
Query: 564 NKEFKFQLTVPELALLRIEIHERDDILQKDDFGGQTCLPVSEL 606
N+E F++ +P+ + E+ + ++ L +DDF GQ +P+ L
Sbjct: 62 NEEILFRV-LPQRHRILFEVFD-ENRLTRDDFLGQVDVPLYPL 102
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 512 GEGWDKEFHHTYFDACSPPDFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWN-KEFKFQ 570
GE W F A P FY + V + +MT+ PI N K+F
Sbjct: 231 GEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPGVYQGGNAKKFTED 290
Query: 571 LTVPELALLRIEIHERDDILQ-KDDFGGQTCLPVSELRQ----GIRAVPLHDRKG 620
L V +L I H DIL+ K D +T L V EL + IRA+P+ + G
Sbjct: 291 LGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIG 345
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 522 TYFDACSP---PDFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKEFKFQLTVPELA- 577
T AC P + Y ++ + S + T I+D+ P WN F Q + +L
Sbjct: 397 TELKACKPNGKSNPYCEISMG-------SQSYTTRTIQDTLNPKWN--FNCQFFIKDLYQ 447
Query: 578 -LLRIEIHERDDILQKDDFGGQTCLPVSELR 607
+L + + +RD DDF G+T +PV+++R
Sbjct: 448 DVLCLTLFDRDQ-FSPDDFLGRTEIPVAKIR 477
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 531 DFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKEFKFQLTVPELALLRIEIHERD-DI 589
D Y K+ + +P + +T+ I+ + P WN+ F F+L P R+ + D D
Sbjct: 40 DPYVKLKL--IPDPKNESKQKTKTIRSTLNPQWNESFTFKLK-PSDKDRRLSVEIWDWDR 96
Query: 590 LQKDDFGGQTCLPVSEL 606
++DF G VSEL
Sbjct: 97 TTRNDFXGSLSFGVSEL 113
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 531 DFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKEFKFQLTVPELALLRIEIHERD-DI 589
D Y K+ + +P + +T+ I+ + P WN+ F F+L P R+ + D D
Sbjct: 39 DPYVKLKL--IPDPKNESKQKTKTIRSTLNPQWNESFTFKLK-PSDKDRRLSVEIWDWDR 95
Query: 590 LQKDDFGGQTCLPVSEL 606
++DF G VSEL
Sbjct: 96 TTRNDFMGSLSFGVSEL 112
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 531 DFYAKVGIAGVPGDTSSMTDQTEPIKDSWVPAWNKEFKFQLTVPELALLRIEIHERD-DI 589
D Y K+ + P + S +T+ I+ + P WN+ F F+L P R+ + D D
Sbjct: 38 DPYVKLKLIPDPKNESKQ--KTKTIRSTLNPQWNESFTFKLK-PSDKDRRLSVEIWDWDR 94
Query: 590 LQKDDFGGQTCLPVSEL 606
++DF G VSEL
Sbjct: 95 TTRNDFMGSLSFGVSEL 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,713,876
Number of Sequences: 62578
Number of extensions: 920066
Number of successful extensions: 2298
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2264
Number of HSP's gapped (non-prelim): 32
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)