BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042073
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 1 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
MHGG P+ EN+ + G NL +HI N +GV VVA+N F TD+EA
Sbjct: 339 MHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEA 390
Query: 61 ELNAVRIXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
ELN + V A GG+G ++L V + E+ LY D+SIK+
Sbjct: 391 ELN---LLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKD 447
Query: 121 KIDTIARS-YGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNA-----PTGF 174
KI IA YGA GV Y+ EA+K I+ Y G+ LP MAKTQ+SFS + P F
Sbjct: 448 KIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNF 507
Query: 175 ILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGL 224
+ +R+VR S G I P+ G I TM GLP RP ID D A G + GL
Sbjct: 508 TITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGL 556
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 1 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
MHGG P+ EN+ + G NL +HI N +GV VVA+N F TD+EA
Sbjct: 339 MHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEA 390
Query: 61 ELNAVRIXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
ELN + V A GG+G ++L V + E+ LY D+SIK+
Sbjct: 391 ELN---LLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKD 447
Query: 121 KIDTIARS-YGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNA-----PTGF 174
KI IA YGA GV Y+ EA+K I+ Y G+ LP MAKTQ+SFS + P F
Sbjct: 448 KIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNF 507
Query: 175 ILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGL 224
+ +R+VR S G I P+ G I TM GLP RP ID D A G + GL
Sbjct: 508 TITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGL 556
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
pdb|3DO6|B Chain B, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
Length = 543
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 10/211 (4%)
Query: 21 ENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIXXXXXXXXXXVVC 80
EN+ ++ G NL H+ N + + + VVVA+N F+TD+E E+ V + V
Sbjct: 337 ENLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYV-VKECEKLGVRVAVS 395
Query: 81 SHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARS-YGASGVEYSEE 139
G +G V+L AV A ++V +P +LY + +++KI+ +A+ Y A VE+S+
Sbjct: 396 EVFKKGSEGGVELAKAVAEAAKDV-EP-AYLYEXNDPVEKKIEILAKEIYRAGRVEFSDT 453
Query: 140 AEKQIKMYTRQGFSGLPFCMAKTQHSFSHN-----APTGFILPIRDVRASIGAGFIYPLV 194
A+ +K + GF LP +AKT S SH+ AP G+ + D+ S GAGF+ L
Sbjct: 454 AKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALS 513
Query: 195 GTISTMLGLPTRPCFYEIDGDTATGRVLGLS 225
G I+ GLP +P D D +G ++G+S
Sbjct: 514 GDINLXPGLPKKPNALNXDVDD-SGNIVGVS 543
>pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual
Functional Aminotransferase Involved In Butirosin
Biosynthesis.
pdb|2C81|A Chain A, Crystal Structures Of The Plp- And Pmp-Bound Forms Of
Btrr, A Dual Functional Aminotransferase Involved In
Butirosin Biosynthesis
Length = 418
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 119 KEKIDTIARS--YGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFIL 176
+ KI+ + +S + SG EE+ ++ F+G+P+C+ T S T +L
Sbjct: 19 RRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGS------TALML 72
Query: 177 PIRDVRASIGAGFIYP---LVGTISTMLGLPTRPCFYEIDGDT 216
+ + G I P + T + +L + P F +++ DT
Sbjct: 73 ALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEADT 115
>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9U|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9V|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9V|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9W|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9W|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9X|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
pdb|2Z9X|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
Length = 392
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 168 HNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRP 207
H+ P+G I PI + A + A Y +V +S+ G+ T P
Sbjct: 143 HDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHP 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,415,408
Number of Sequences: 62578
Number of extensions: 237890
Number of successful extensions: 813
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 10
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)